Multiple sequence alignment - TraesCS3D01G069900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G069900 chr3D 100.000 6609 0 0 1 6609 30988611 30982003 0.000000e+00 12205.0
1 TraesCS3D01G069900 chr3D 89.288 1867 179 12 3010 4869 31434801 31436653 0.000000e+00 2320.0
2 TraesCS3D01G069900 chr3D 92.600 1027 59 7 438 1463 31432308 31433318 0.000000e+00 1459.0
3 TraesCS3D01G069900 chr3D 87.722 619 59 10 2402 3011 31434144 31434754 0.000000e+00 706.0
4 TraesCS3D01G069900 chr3D 91.798 317 23 3 1590 1906 31433531 31433844 7.870000e-119 438.0
5 TraesCS3D01G069900 chr3D 76.601 812 150 31 620 1418 30418464 30417680 1.720000e-110 411.0
6 TraesCS3D01G069900 chr3D 90.347 259 25 0 2075 2333 31433879 31434137 2.280000e-89 340.0
7 TraesCS3D01G069900 chr3D 80.990 384 60 11 1040 1418 30414553 30414178 6.480000e-75 292.0
8 TraesCS3D01G069900 chr3D 94.048 168 10 0 1905 2072 187836471 187836304 8.500000e-64 255.0
9 TraesCS3D01G069900 chr3D 78.814 118 16 6 5936 6049 138079826 138079714 3.310000e-08 71.3
10 TraesCS3D01G069900 chr3D 95.238 42 2 0 1 42 14952618 14952577 4.280000e-07 67.6
11 TraesCS3D01G069900 chr3B 96.581 2896 80 9 2409 5294 53576899 53574013 0.000000e+00 4782.0
12 TraesCS3D01G069900 chr3B 93.560 1351 56 10 148 1477 53580416 53579076 0.000000e+00 1984.0
13 TraesCS3D01G069900 chr3B 90.256 780 37 11 5864 6609 53572892 53572118 0.000000e+00 983.0
14 TraesCS3D01G069900 chr3B 97.089 584 12 3 5291 5869 53573887 53573304 0.000000e+00 979.0
15 TraesCS3D01G069900 chr3B 96.417 307 10 1 1610 1915 53579073 53578767 7.650000e-139 505.0
16 TraesCS3D01G069900 chr3B 98.524 271 4 0 2067 2337 53578776 53578506 4.640000e-131 479.0
17 TraesCS3D01G069900 chr3B 92.857 168 11 1 1905 2072 269252152 269251986 6.620000e-60 243.0
18 TraesCS3D01G069900 chr3B 94.366 142 7 1 1478 1619 112325162 112325302 4.010000e-52 217.0
19 TraesCS3D01G069900 chr3A 95.149 2618 105 15 2398 4998 44354955 44352343 0.000000e+00 4111.0
20 TraesCS3D01G069900 chr3A 89.019 1876 185 12 3010 4878 51771154 51769293 0.000000e+00 2303.0
21 TraesCS3D01G069900 chr3A 94.138 1450 59 9 45 1477 44356922 44355482 0.000000e+00 2183.0
22 TraesCS3D01G069900 chr3A 92.405 1027 61 7 438 1463 51773642 51772632 0.000000e+00 1448.0
23 TraesCS3D01G069900 chr3A 88.130 615 59 9 2402 3011 51771806 51771201 0.000000e+00 719.0
24 TraesCS3D01G069900 chr3A 93.980 299 18 0 1610 1908 44355479 44355181 2.810000e-123 453.0
25 TraesCS3D01G069900 chr3A 90.536 317 27 3 1590 1906 51772419 51772106 3.690000e-112 416.0
26 TraesCS3D01G069900 chr3A 88.889 324 29 4 5293 5614 44323085 44322767 6.210000e-105 392.0
27 TraesCS3D01G069900 chr3A 89.961 259 26 0 2075 2333 51772071 51771813 1.060000e-87 335.0
28 TraesCS3D01G069900 chr3A 99.448 181 1 0 2157 2337 44355134 44354954 4.940000e-86 329.0
29 TraesCS3D01G069900 chr3A 80.628 382 65 8 1040 1418 43292751 43292376 3.020000e-73 287.0
30 TraesCS3D01G069900 chr3A 80.628 382 65 8 1040 1418 43876120 43875745 3.020000e-73 287.0
31 TraesCS3D01G069900 chr3A 94.048 168 10 0 1905 2072 238686208 238686375 8.500000e-64 255.0
32 TraesCS3D01G069900 chr3A 97.561 41 1 0 1 41 614470633 614470673 3.310000e-08 71.3
33 TraesCS3D01G069900 chr3A 95.349 43 2 0 1 43 505527803 505527761 1.190000e-07 69.4
34 TraesCS3D01G069900 chrUn 80.628 382 65 8 1040 1418 332582489 332582864 3.020000e-73 287.0
35 TraesCS3D01G069900 chrUn 92.771 166 11 1 1907 2071 320881578 320881743 8.570000e-59 239.0
36 TraesCS3D01G069900 chrUn 97.143 70 2 0 2337 2406 332212165 332212096 1.160000e-22 119.0
37 TraesCS3D01G069900 chrUn 97.143 70 2 0 2337 2406 380591129 380591060 1.160000e-22 119.0
38 TraesCS3D01G069900 chrUn 97.143 70 2 0 2337 2406 395675683 395675614 1.160000e-22 119.0
39 TraesCS3D01G069900 chrUn 97.143 70 2 0 2337 2406 453336192 453336123 1.160000e-22 119.0
40 TraesCS3D01G069900 chrUn 83.721 86 12 2 5945 6030 57991364 57991281 5.490000e-11 80.5
41 TraesCS3D01G069900 chrUn 83.721 86 12 2 5945 6030 300824871 300824954 5.490000e-11 80.5
42 TraesCS3D01G069900 chrUn 100.000 28 0 0 5735 5762 116719744 116719771 1.200000e-02 52.8
43 TraesCS3D01G069900 chrUn 100.000 28 0 0 5735 5762 180305403 180305430 1.200000e-02 52.8
44 TraesCS3D01G069900 chrUn 100.000 28 0 0 5735 5762 180329291 180329318 1.200000e-02 52.8
45 TraesCS3D01G069900 chr7D 93.491 169 10 1 1904 2072 382733641 382733808 3.960000e-62 250.0
46 TraesCS3D01G069900 chr7D 79.358 218 32 10 5869 6080 424127242 424127452 2.480000e-29 141.0
47 TraesCS3D01G069900 chr4D 92.857 168 12 0 1907 2074 326382448 326382615 1.840000e-60 244.0
48 TraesCS3D01G069900 chr4D 93.289 149 7 3 1478 1624 437295901 437295754 4.010000e-52 217.0
49 TraesCS3D01G069900 chr4D 80.952 252 40 6 6343 6591 93204953 93205199 6.760000e-45 193.0
50 TraesCS3D01G069900 chr4D 83.425 181 24 5 5911 6086 336825288 336825109 5.300000e-36 163.0
51 TraesCS3D01G069900 chr4D 82.857 175 24 5 5911 6080 336880571 336880744 1.150000e-32 152.0
52 TraesCS3D01G069900 chr4D 79.114 158 28 3 6291 6446 93204537 93204691 3.260000e-18 104.0
53 TraesCS3D01G069900 chr4D 83.529 85 12 2 5950 6034 129689990 129690072 1.980000e-10 78.7
54 TraesCS3D01G069900 chr4B 93.865 163 8 2 1907 2068 406389296 406389457 1.840000e-60 244.0
55 TraesCS3D01G069900 chr4B 100.000 38 0 0 1 38 369270948 369270985 3.310000e-08 71.3
56 TraesCS3D01G069900 chr6D 92.262 168 13 0 1905 2072 438321897 438321730 8.570000e-59 239.0
57 TraesCS3D01G069900 chr6D 92.053 151 11 1 1466 1616 467084032 467084181 1.870000e-50 211.0
58 TraesCS3D01G069900 chr6D 98.507 67 1 0 2337 2403 124514359 124514425 1.160000e-22 119.0
59 TraesCS3D01G069900 chr6D 97.143 70 2 0 2337 2406 283225701 283225632 1.160000e-22 119.0
60 TraesCS3D01G069900 chr6D 97.143 70 2 0 2337 2406 425989661 425989592 1.160000e-22 119.0
61 TraesCS3D01G069900 chr6D 80.000 100 15 4 59 153 462684898 462684997 1.190000e-07 69.4
62 TraesCS3D01G069900 chr1D 81.788 302 40 12 5790 6080 416487590 416487293 8.570000e-59 239.0
63 TraesCS3D01G069900 chr1D 88.571 70 7 1 58 126 211684098 211684167 4.250000e-12 84.2
64 TraesCS3D01G069900 chr1A 92.262 168 13 0 1907 2074 295587976 295588143 8.570000e-59 239.0
65 TraesCS3D01G069900 chr1A 80.602 299 43 12 5790 6078 513838221 513837928 4.010000e-52 217.0
66 TraesCS3D01G069900 chr1A 92.105 38 2 1 5735 5771 548462140 548462103 1.200000e-02 52.8
67 TraesCS3D01G069900 chr7B 96.454 141 4 1 1478 1618 11441168 11441307 1.430000e-56 231.0
68 TraesCS3D01G069900 chr7B 98.529 68 1 0 2339 2406 47248536 47248603 3.240000e-23 121.0
69 TraesCS3D01G069900 chr2D 93.960 149 7 2 1478 1626 362930944 362930798 2.400000e-54 224.0
70 TraesCS3D01G069900 chr2D 82.143 140 23 2 6087 6225 11032076 11032214 1.160000e-22 119.0
71 TraesCS3D01G069900 chr2D 97.561 41 0 1 1 41 568932686 568932725 1.190000e-07 69.4
72 TraesCS3D01G069900 chr2B 95.035 141 6 1 1478 1618 66994669 66994808 3.100000e-53 220.0
73 TraesCS3D01G069900 chr2B 77.540 187 25 8 5788 5970 13774141 13774314 5.450000e-16 97.1
74 TraesCS3D01G069900 chr7A 93.793 145 7 2 1478 1622 691723672 691723814 4.010000e-52 217.0
75 TraesCS3D01G069900 chr6B 93.793 145 7 2 1478 1621 450843730 450843587 4.010000e-52 217.0
76 TraesCS3D01G069900 chr6B 87.755 49 5 1 5735 5783 465358549 465358502 1.000000e-03 56.5
77 TraesCS3D01G069900 chr6B 100.000 28 0 0 5735 5762 171420416 171420389 1.200000e-02 52.8
78 TraesCS3D01G069900 chr6B 100.000 28 0 0 5735 5762 703478353 703478326 1.200000e-02 52.8
79 TraesCS3D01G069900 chr5D 93.243 148 7 3 1473 1618 399146650 399146796 1.440000e-51 215.0
80 TraesCS3D01G069900 chr5D 76.119 402 58 23 6079 6448 193672202 193671807 6.810000e-40 176.0
81 TraesCS3D01G069900 chr5D 76.010 396 63 21 6080 6448 379622965 379622575 6.810000e-40 176.0
82 TraesCS3D01G069900 chr5D 91.379 58 3 2 5920 5975 260790252 260790195 1.980000e-10 78.7
83 TraesCS3D01G069900 chr1B 80.556 288 47 8 6308 6591 376495840 376496122 5.190000e-51 213.0
84 TraesCS3D01G069900 chr1B 88.406 69 7 1 58 125 305176255 305176187 1.530000e-11 82.4
85 TraesCS3D01G069900 chr2A 80.751 213 32 7 6240 6447 474826964 474826756 2.470000e-34 158.0
86 TraesCS3D01G069900 chr6A 77.409 301 43 20 5789 6080 597023323 597023039 8.870000e-34 156.0
87 TraesCS3D01G069900 chr6A 97.143 70 2 0 2337 2406 84399344 84399275 1.160000e-22 119.0
88 TraesCS3D01G069900 chr5B 85.816 141 15 4 5948 6086 577350201 577350064 1.920000e-30 145.0
89 TraesCS3D01G069900 chr5B 92.683 41 3 0 1 41 37687469 37687509 7.160000e-05 60.2
90 TraesCS3D01G069900 chr5B 97.143 35 1 0 7 41 38629997 38629963 7.160000e-05 60.2
91 TraesCS3D01G069900 chr5A 86.131 137 14 3 5946 6080 590674427 590674294 6.910000e-30 143.0
92 TraesCS3D01G069900 chr5A 88.991 109 12 0 5966 6074 618299904 618300012 1.160000e-27 135.0
93 TraesCS3D01G069900 chr5A 80.625 160 18 10 5934 6086 568228458 568228611 1.950000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G069900 chr3D 30982003 30988611 6608 True 12205.000000 12205 100.00000 1 6609 1 chr3D.!!$R2 6608
1 TraesCS3D01G069900 chr3D 31432308 31436653 4345 False 1052.600000 2320 90.35100 438 4869 5 chr3D.!!$F1 4431
2 TraesCS3D01G069900 chr3D 30414178 30418464 4286 True 351.500000 411 78.79550 620 1418 2 chr3D.!!$R5 798
3 TraesCS3D01G069900 chr3B 53572118 53580416 8298 True 1618.666667 4782 95.40450 148 6609 6 chr3B.!!$R2 6461
4 TraesCS3D01G069900 chr3A 44352343 44356922 4579 True 1769.000000 4111 95.67875 45 4998 4 chr3A.!!$R5 4953
5 TraesCS3D01G069900 chr3A 51769293 51773642 4349 True 1044.200000 2303 90.01020 438 4878 5 chr3A.!!$R6 4440

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
339 356 0.309922 CCGCCGACTAGCTTCGATAA 59.690 55.000 9.37 0.0 41.78 1.75 F
2022 2220 0.906066 TTTGCTCCGTATGTAGCCCA 59.094 50.000 0.00 0.0 37.97 5.36 F
2352 2892 0.859232 CGTTCCAGAGAAACGTGTGG 59.141 55.000 0.00 0.0 32.58 4.17 F
3666 6314 1.152312 ACTGGGGTCTCGGTGAGTT 60.152 57.895 0.00 0.0 0.00 3.01 F
4185 6858 0.247736 CAAGAGTTCTGACCTCGGGG 59.752 60.000 0.00 0.0 38.88 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2053 2251 0.179081 GCATGTACTCCCTCCGTTCC 60.179 60.000 0.00 0.0 0.00 3.62 R
3757 6405 1.202557 GGTAACCACGTGACCTGAACA 60.203 52.381 19.30 0.0 34.30 3.18 R
3789 6437 3.195825 AGAAATAACTCACCGTCCTCCAG 59.804 47.826 0.00 0.0 0.00 3.86 R
4785 7543 1.821136 GGGAGTTTCTTCCAAGCCATG 59.179 52.381 0.00 0.0 39.09 3.66 R
5773 8673 1.926426 ATGCCCTAGGTCTGTTGCCC 61.926 60.000 8.29 0.0 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.922206 TGAGGGGCCATATTTGACATATC 58.078 43.478 4.39 0.00 0.00 1.63
23 24 4.263905 TGAGGGGCCATATTTGACATATCC 60.264 45.833 4.39 0.00 0.00 2.59
24 25 3.662148 AGGGGCCATATTTGACATATCCA 59.338 43.478 4.39 0.00 0.00 3.41
25 26 4.019174 GGGGCCATATTTGACATATCCAG 58.981 47.826 4.39 0.00 0.00 3.86
26 27 3.445096 GGGCCATATTTGACATATCCAGC 59.555 47.826 4.39 0.00 0.00 4.85
27 28 4.338879 GGCCATATTTGACATATCCAGCT 58.661 43.478 0.00 0.00 0.00 4.24
28 29 4.157289 GGCCATATTTGACATATCCAGCTG 59.843 45.833 6.78 6.78 0.00 4.24
29 30 4.763793 GCCATATTTGACATATCCAGCTGT 59.236 41.667 13.81 0.00 0.00 4.40
30 31 5.939883 GCCATATTTGACATATCCAGCTGTA 59.060 40.000 13.81 0.00 0.00 2.74
31 32 6.093219 GCCATATTTGACATATCCAGCTGTAG 59.907 42.308 13.81 0.00 0.00 2.74
32 33 7.389232 CCATATTTGACATATCCAGCTGTAGA 58.611 38.462 13.81 3.82 0.00 2.59
33 34 8.045507 CCATATTTGACATATCCAGCTGTAGAT 58.954 37.037 13.81 11.55 0.00 1.98
34 35 8.880750 CATATTTGACATATCCAGCTGTAGATG 58.119 37.037 11.88 11.88 0.00 2.90
35 36 4.263018 TGACATATCCAGCTGTAGATGC 57.737 45.455 13.21 7.41 0.00 3.91
36 37 3.899980 TGACATATCCAGCTGTAGATGCT 59.100 43.478 13.21 1.95 42.06 3.79
37 38 4.021632 TGACATATCCAGCTGTAGATGCTC 60.022 45.833 13.21 10.43 38.92 4.26
38 39 4.158786 ACATATCCAGCTGTAGATGCTCT 58.841 43.478 13.21 0.00 38.92 4.09
39 40 5.328565 ACATATCCAGCTGTAGATGCTCTA 58.671 41.667 13.21 0.00 38.92 2.43
40 41 5.777223 ACATATCCAGCTGTAGATGCTCTAA 59.223 40.000 13.21 0.00 38.92 2.10
41 42 6.440010 ACATATCCAGCTGTAGATGCTCTAAT 59.560 38.462 13.21 0.00 38.92 1.73
42 43 7.617329 ACATATCCAGCTGTAGATGCTCTAATA 59.383 37.037 13.21 0.00 38.92 0.98
43 44 6.924913 ATCCAGCTGTAGATGCTCTAATAA 57.075 37.500 13.81 0.00 38.92 1.40
100 101 8.356657 TGATGTAAAAATTCACCTTTTGACGAT 58.643 29.630 0.00 0.00 33.74 3.73
119 120 8.039603 TGACGATGTAAATTTTACTCAAGCAT 57.960 30.769 17.70 4.62 0.00 3.79
141 142 7.399191 AGCATAAATTGATTGCATCATCCCTAT 59.601 33.333 9.39 0.00 39.39 2.57
146 147 6.395426 TTGATTGCATCATCCCTATTGAAC 57.605 37.500 0.00 0.00 39.39 3.18
260 265 2.070783 CGTCTATCGAGCTCCTACTCC 58.929 57.143 8.47 0.00 42.86 3.85
295 308 2.550101 CGGACCCGTCTATCCCGTC 61.550 68.421 0.00 0.00 35.83 4.79
337 354 2.722487 CCGCCGACTAGCTTCGAT 59.278 61.111 9.37 0.00 41.78 3.59
339 356 0.309922 CCGCCGACTAGCTTCGATAA 59.690 55.000 9.37 0.00 41.78 1.75
340 357 1.663445 CCGCCGACTAGCTTCGATAAG 60.663 57.143 9.37 0.00 41.78 1.73
396 416 4.716784 TCCACACTCAACAATCTAGCCTAT 59.283 41.667 0.00 0.00 0.00 2.57
509 536 1.652124 GAAGCTCGAATAAACGACGCA 59.348 47.619 0.00 0.00 38.15 5.24
559 589 8.246180 TGAGGATTGATTTCAATTTTGCTACTC 58.754 33.333 7.20 1.87 45.72 2.59
781 811 7.239972 GCTCGCTTCATTCCATAAAGATAATC 58.760 38.462 0.00 0.00 0.00 1.75
785 815 7.301054 GCTTCATTCCATAAAGATAATCGTGG 58.699 38.462 0.00 0.00 0.00 4.94
935 966 6.759272 TGAGAGCAATTCAACTACTACAAGT 58.241 36.000 0.00 0.00 0.00 3.16
936 967 7.217200 TGAGAGCAATTCAACTACTACAAGTT 58.783 34.615 0.00 0.00 40.33 2.66
937 968 8.364894 TGAGAGCAATTCAACTACTACAAGTTA 58.635 33.333 0.00 0.00 37.61 2.24
938 969 9.204570 GAGAGCAATTCAACTACTACAAGTTAA 57.795 33.333 0.00 0.00 37.61 2.01
1055 1086 1.868469 TTGTTGCTTGCTGATTTGCC 58.132 45.000 0.00 0.00 0.00 4.52
1080 1111 2.695359 TGGTAACCATTCTGCGAACTC 58.305 47.619 0.00 0.00 0.00 3.01
1110 1141 8.240682 TGTATTCATGTTGTGGTGCTTTATTAC 58.759 33.333 0.00 0.00 0.00 1.89
1181 1212 9.574516 GGATGGTTGGAATACTATGACTTAAAT 57.425 33.333 0.00 0.00 0.00 1.40
1315 1346 3.950397 TCGACTCAGGCAAATTAATGGT 58.050 40.909 0.00 0.00 0.00 3.55
1431 1462 9.107177 CATTTCTCTCTTTACTTATCTGCATGT 57.893 33.333 0.00 0.00 0.00 3.21
1478 1676 3.251729 CAGTGGCTACCAACATATGCATC 59.748 47.826 0.19 0.00 34.18 3.91
1479 1677 3.137176 AGTGGCTACCAACATATGCATCT 59.863 43.478 0.19 0.00 34.18 2.90
1480 1678 3.885297 GTGGCTACCAACATATGCATCTT 59.115 43.478 0.19 0.00 34.18 2.40
1481 1679 4.339247 GTGGCTACCAACATATGCATCTTT 59.661 41.667 0.19 0.00 34.18 2.52
1482 1680 4.955450 TGGCTACCAACATATGCATCTTTT 59.045 37.500 0.19 0.00 0.00 2.27
1485 1683 7.141363 GGCTACCAACATATGCATCTTTTTAG 58.859 38.462 0.19 0.00 0.00 1.85
1486 1684 7.013274 GGCTACCAACATATGCATCTTTTTAGA 59.987 37.037 0.19 0.00 0.00 2.10
1487 1685 8.072567 GCTACCAACATATGCATCTTTTTAGAG 58.927 37.037 0.19 0.00 0.00 2.43
1488 1686 9.330063 CTACCAACATATGCATCTTTTTAGAGA 57.670 33.333 0.19 0.00 0.00 3.10
1489 1687 8.757982 ACCAACATATGCATCTTTTTAGAGAT 57.242 30.769 0.19 0.00 36.84 2.75
1510 1708 9.314321 AGAGATTTCACTACAAAATACATACGG 57.686 33.333 0.00 0.00 0.00 4.02
1511 1709 8.433421 AGATTTCACTACAAAATACATACGGG 57.567 34.615 0.00 0.00 0.00 5.28
1512 1710 8.044908 AGATTTCACTACAAAATACATACGGGT 58.955 33.333 0.00 0.00 0.00 5.28
1513 1711 6.971527 TTCACTACAAAATACATACGGGTG 57.028 37.500 0.00 0.00 0.00 4.61
1514 1712 6.040209 TCACTACAAAATACATACGGGTGT 57.960 37.500 0.66 0.66 36.13 4.16
1516 1714 7.784037 TCACTACAAAATACATACGGGTGTAT 58.216 34.615 8.59 8.59 44.85 2.29
1517 1715 8.911965 TCACTACAAAATACATACGGGTGTATA 58.088 33.333 13.22 0.62 42.79 1.47
1518 1716 9.701098 CACTACAAAATACATACGGGTGTATAT 57.299 33.333 13.22 5.56 42.79 0.86
1522 1720 9.918630 ACAAAATACATACGGGTGTATATAGAC 57.081 33.333 13.22 1.36 42.79 2.59
1523 1721 9.917129 CAAAATACATACGGGTGTATATAGACA 57.083 33.333 11.75 0.00 42.79 3.41
1556 1754 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
1557 1755 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
1558 1756 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
1559 1757 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
1560 1758 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
1561 1759 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
1562 1760 5.525378 AGATTCACTCATTTTGCTCCGTATC 59.475 40.000 0.00 0.00 0.00 2.24
1563 1761 4.471904 TCACTCATTTTGCTCCGTATCT 57.528 40.909 0.00 0.00 0.00 1.98
1564 1762 5.592104 TCACTCATTTTGCTCCGTATCTA 57.408 39.130 0.00 0.00 0.00 1.98
1565 1763 5.592054 TCACTCATTTTGCTCCGTATCTAG 58.408 41.667 0.00 0.00 0.00 2.43
1566 1764 5.127194 TCACTCATTTTGCTCCGTATCTAGT 59.873 40.000 0.00 0.00 0.00 2.57
1567 1765 5.460419 CACTCATTTTGCTCCGTATCTAGTC 59.540 44.000 0.00 0.00 0.00 2.59
1568 1766 4.945246 TCATTTTGCTCCGTATCTAGTCC 58.055 43.478 0.00 0.00 0.00 3.85
1569 1767 4.404394 TCATTTTGCTCCGTATCTAGTCCA 59.596 41.667 0.00 0.00 0.00 4.02
1570 1768 5.070446 TCATTTTGCTCCGTATCTAGTCCAT 59.930 40.000 0.00 0.00 0.00 3.41
1571 1769 6.266786 TCATTTTGCTCCGTATCTAGTCCATA 59.733 38.462 0.00 0.00 0.00 2.74
1572 1770 5.707242 TTTGCTCCGTATCTAGTCCATAG 57.293 43.478 0.00 0.00 0.00 2.23
1573 1771 4.368565 TGCTCCGTATCTAGTCCATAGT 57.631 45.455 0.00 0.00 32.85 2.12
1574 1772 4.072839 TGCTCCGTATCTAGTCCATAGTG 58.927 47.826 0.00 0.00 32.85 2.74
1575 1773 3.440872 GCTCCGTATCTAGTCCATAGTGG 59.559 52.174 0.00 0.00 39.43 4.00
1576 1774 4.806625 GCTCCGTATCTAGTCCATAGTGGA 60.807 50.000 0.00 0.00 45.98 4.02
1591 1789 8.380742 TCCATAGTGGAATCTCTAAAAAGACT 57.619 34.615 0.00 0.00 45.00 3.24
1592 1790 8.826765 TCCATAGTGGAATCTCTAAAAAGACTT 58.173 33.333 0.00 0.00 45.00 3.01
1610 1808 7.909485 AAGACTTATATTTAGGAACGGAGGA 57.091 36.000 0.00 0.00 0.00 3.71
1641 1839 2.702592 TGGGGGCACTAAAAGTATCG 57.297 50.000 0.00 0.00 0.00 2.92
1700 1898 1.473258 TTTGTGTGCTTGCCTGAACT 58.527 45.000 0.00 0.00 0.00 3.01
1742 1940 2.548547 GGAGTTGGAGGGCCCCTTT 61.549 63.158 21.43 0.00 31.76 3.11
1798 1996 8.437274 ACTTTTATTCTAAGGAAGAGACTCCA 57.563 34.615 0.00 0.00 38.02 3.86
1876 2074 3.179830 GTGCTGGTATGTCTTCTACACG 58.820 50.000 0.00 0.00 42.09 4.49
1911 2109 7.003402 AGAATCTCTGATTGGCTTATACTCC 57.997 40.000 0.00 0.00 0.00 3.85
1912 2110 6.786959 AGAATCTCTGATTGGCTTATACTCCT 59.213 38.462 0.00 0.00 0.00 3.69
1913 2111 7.292120 AGAATCTCTGATTGGCTTATACTCCTT 59.708 37.037 0.00 0.00 0.00 3.36
1914 2112 6.412362 TCTCTGATTGGCTTATACTCCTTC 57.588 41.667 0.00 0.00 0.00 3.46
1915 2113 5.305644 TCTCTGATTGGCTTATACTCCTTCC 59.694 44.000 0.00 0.00 0.00 3.46
1916 2114 4.039245 TCTGATTGGCTTATACTCCTTCCG 59.961 45.833 0.00 0.00 0.00 4.30
1917 2115 3.709653 TGATTGGCTTATACTCCTTCCGT 59.290 43.478 0.00 0.00 0.00 4.69
1918 2116 4.163458 TGATTGGCTTATACTCCTTCCGTT 59.837 41.667 0.00 0.00 0.00 4.44
1919 2117 3.814005 TGGCTTATACTCCTTCCGTTC 57.186 47.619 0.00 0.00 0.00 3.95
1920 2118 2.433239 TGGCTTATACTCCTTCCGTTCC 59.567 50.000 0.00 0.00 0.00 3.62
1921 2119 2.699321 GGCTTATACTCCTTCCGTTCCT 59.301 50.000 0.00 0.00 0.00 3.36
1923 2121 4.343239 GGCTTATACTCCTTCCGTTCCTAA 59.657 45.833 0.00 0.00 0.00 2.69
1927 2125 8.312564 GCTTATACTCCTTCCGTTCCTAAATAT 58.687 37.037 0.00 0.00 0.00 1.28
1933 2131 7.564292 ACTCCTTCCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
1935 2133 8.765517 TCCTTCCGTTCCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
1936 2134 9.043079 CCTTCCGTTCCTAAATATAAGTCTTTC 57.957 37.037 0.00 0.00 0.00 2.62
2008 2206 9.944376 TTAGAGTGTAGATTCACTTATTTTGCT 57.056 29.630 0.98 0.00 46.81 3.91
2009 2207 8.485976 AGAGTGTAGATTCACTTATTTTGCTC 57.514 34.615 0.98 0.00 46.81 4.26
2010 2208 7.550906 AGAGTGTAGATTCACTTATTTTGCTCC 59.449 37.037 0.98 0.00 46.81 4.70
2012 2210 6.092259 GTGTAGATTCACTTATTTTGCTCCGT 59.908 38.462 0.00 0.00 35.68 4.69
2013 2211 7.277098 GTGTAGATTCACTTATTTTGCTCCGTA 59.723 37.037 0.00 0.00 35.68 4.02
2014 2212 7.985184 TGTAGATTCACTTATTTTGCTCCGTAT 59.015 33.333 0.00 0.00 0.00 3.06
2015 2213 7.251704 AGATTCACTTATTTTGCTCCGTATG 57.748 36.000 0.00 0.00 0.00 2.39
2016 2214 6.823689 AGATTCACTTATTTTGCTCCGTATGT 59.176 34.615 0.00 0.00 0.00 2.29
2018 2216 7.534085 TTCACTTATTTTGCTCCGTATGTAG 57.466 36.000 0.00 0.00 0.00 2.74
2019 2217 5.522460 TCACTTATTTTGCTCCGTATGTAGC 59.478 40.000 0.00 0.00 39.25 3.58
2020 2218 4.814771 ACTTATTTTGCTCCGTATGTAGCC 59.185 41.667 0.00 0.00 37.97 3.93
2021 2219 2.032680 TTTTGCTCCGTATGTAGCCC 57.967 50.000 0.00 0.00 37.97 5.19
2022 2220 0.906066 TTTGCTCCGTATGTAGCCCA 59.094 50.000 0.00 0.00 37.97 5.36
2023 2221 1.128200 TTGCTCCGTATGTAGCCCAT 58.872 50.000 0.00 0.00 37.97 4.00
2024 2222 2.003937 TGCTCCGTATGTAGCCCATA 57.996 50.000 0.00 0.00 37.97 2.74
2025 2223 2.536066 TGCTCCGTATGTAGCCCATAT 58.464 47.619 0.00 0.00 38.29 1.78
2026 2224 2.903784 TGCTCCGTATGTAGCCCATATT 59.096 45.455 0.00 0.00 38.29 1.28
2028 2226 3.056107 GCTCCGTATGTAGCCCATATTGA 60.056 47.826 0.00 0.00 38.29 2.57
2029 2227 4.562757 GCTCCGTATGTAGCCCATATTGAA 60.563 45.833 0.00 0.00 38.29 2.69
2030 2228 5.547465 CTCCGTATGTAGCCCATATTGAAA 58.453 41.667 0.00 0.00 38.29 2.69
2031 2229 6.121776 TCCGTATGTAGCCCATATTGAAAT 57.878 37.500 0.00 0.00 38.29 2.17
2032 2230 6.170506 TCCGTATGTAGCCCATATTGAAATC 58.829 40.000 0.00 0.00 38.29 2.17
2033 2231 6.013725 TCCGTATGTAGCCCATATTGAAATCT 60.014 38.462 0.00 0.00 38.29 2.40
2037 2235 9.944376 GTATGTAGCCCATATTGAAATCTCTAA 57.056 33.333 0.00 0.00 38.29 2.10
2039 2237 9.866655 ATGTAGCCCATATTGAAATCTCTAAAA 57.133 29.630 0.00 0.00 29.82 1.52
2043 2241 8.907885 AGCCCATATTGAAATCTCTAAAAAGAC 58.092 33.333 0.00 0.00 0.00 3.01
2044 2242 8.907885 GCCCATATTGAAATCTCTAAAAAGACT 58.092 33.333 0.00 0.00 0.00 3.24
2059 2257 9.595823 TCTAAAAAGACTGATATTTAGGAACGG 57.404 33.333 0.00 0.00 36.48 4.44
2060 2258 9.595823 CTAAAAAGACTGATATTTAGGAACGGA 57.404 33.333 0.00 0.00 33.69 4.69
2061 2259 8.494016 AAAAAGACTGATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2062 2260 5.793030 AGACTGATATTTAGGAACGGAGG 57.207 43.478 0.00 0.00 0.00 4.30
2063 2261 4.589374 AGACTGATATTTAGGAACGGAGGG 59.411 45.833 0.00 0.00 0.00 4.30
2064 2262 4.553678 ACTGATATTTAGGAACGGAGGGA 58.446 43.478 0.00 0.00 0.00 4.20
2065 2263 4.589374 ACTGATATTTAGGAACGGAGGGAG 59.411 45.833 0.00 0.00 0.00 4.30
2066 2264 4.553678 TGATATTTAGGAACGGAGGGAGT 58.446 43.478 0.00 0.00 0.00 3.85
2089 2313 4.530875 ACATGCTTCTTTATCCTTCCCTG 58.469 43.478 0.00 0.00 0.00 4.45
2340 2880 2.476873 CGTAGGACATCTCGTTCCAG 57.523 55.000 0.00 0.00 0.00 3.86
2341 2881 2.014857 CGTAGGACATCTCGTTCCAGA 58.985 52.381 0.00 0.00 0.00 3.86
2349 2889 2.417339 TCTCGTTCCAGAGAAACGTG 57.583 50.000 8.08 6.27 43.56 4.49
2350 2890 1.679680 TCTCGTTCCAGAGAAACGTGT 59.320 47.619 8.08 0.00 43.56 4.49
2351 2891 1.787155 CTCGTTCCAGAGAAACGTGTG 59.213 52.381 8.08 0.00 40.57 3.82
2352 2892 0.859232 CGTTCCAGAGAAACGTGTGG 59.141 55.000 0.00 0.00 32.58 4.17
2353 2893 1.805120 CGTTCCAGAGAAACGTGTGGT 60.805 52.381 0.00 0.00 32.58 4.16
2375 2915 3.634397 TCTGAACCCATTGAGATGACC 57.366 47.619 0.00 0.00 35.16 4.02
2377 2917 1.991813 TGAACCCATTGAGATGACCCA 59.008 47.619 0.00 0.00 35.16 4.51
2378 2918 2.378208 TGAACCCATTGAGATGACCCAA 59.622 45.455 0.00 0.00 35.16 4.12
2379 2919 2.814805 ACCCATTGAGATGACCCAAG 57.185 50.000 0.00 0.00 35.16 3.61
2380 2920 2.278245 ACCCATTGAGATGACCCAAGA 58.722 47.619 0.00 0.00 35.16 3.02
2381 2921 2.649312 ACCCATTGAGATGACCCAAGAA 59.351 45.455 0.00 0.00 35.16 2.52
2383 2923 4.264532 ACCCATTGAGATGACCCAAGAATT 60.265 41.667 0.00 0.00 35.16 2.17
2385 2925 5.163478 CCCATTGAGATGACCCAAGAATTTC 60.163 44.000 0.00 0.00 35.16 2.17
2386 2926 5.449588 CCATTGAGATGACCCAAGAATTTCG 60.450 44.000 0.00 0.00 35.16 3.46
2387 2927 3.009723 TGAGATGACCCAAGAATTTCGC 58.990 45.455 0.00 0.00 0.00 4.70
2388 2928 3.274288 GAGATGACCCAAGAATTTCGCT 58.726 45.455 0.00 0.00 0.00 4.93
2389 2929 3.012518 AGATGACCCAAGAATTTCGCTG 58.987 45.455 0.00 0.00 0.00 5.18
2391 2931 2.582052 TGACCCAAGAATTTCGCTGTT 58.418 42.857 0.00 0.00 0.00 3.16
2393 2933 3.004315 TGACCCAAGAATTTCGCTGTTTC 59.996 43.478 0.00 0.00 0.00 2.78
2395 2935 2.225491 CCCAAGAATTTCGCTGTTTCGA 59.775 45.455 0.00 0.00 36.60 3.71
2396 2936 3.119849 CCCAAGAATTTCGCTGTTTCGAT 60.120 43.478 0.00 0.00 38.37 3.59
2664 5202 5.387113 AATGGCATTTGGTAGGTGATCTA 57.613 39.130 6.96 0.00 0.00 1.98
2802 5344 2.929960 ACAGTTGTCGTGTACTCGATG 58.070 47.619 21.42 17.26 41.78 3.84
2807 5349 2.007608 TGTCGTGTACTCGATGAGGAG 58.992 52.381 21.42 0.00 41.78 3.69
2982 5525 7.422399 TGTTTGGCACTTCAGTTTTATAGTTC 58.578 34.615 0.00 0.00 0.00 3.01
3056 5647 7.154656 ACTCATGAGTATATCGCATTTTGCTA 58.845 34.615 26.87 0.00 39.71 3.49
3475 6123 5.578336 GCAGGAGATGGAAAATAAAAAGCAC 59.422 40.000 0.00 0.00 0.00 4.40
3528 6176 5.711976 CAGAACTTAATTCAGGTTGGGTCAT 59.288 40.000 0.00 0.00 40.09 3.06
3531 6179 7.947890 AGAACTTAATTCAGGTTGGGTCATTTA 59.052 33.333 0.00 0.00 40.09 1.40
3666 6314 1.152312 ACTGGGGTCTCGGTGAGTT 60.152 57.895 0.00 0.00 0.00 3.01
3667 6315 1.293498 CTGGGGTCTCGGTGAGTTG 59.707 63.158 0.00 0.00 0.00 3.16
3681 6329 4.494484 GGTGAGTTGTTGCTTTCAGTTTT 58.506 39.130 0.00 0.00 0.00 2.43
3691 6339 6.919662 TGTTGCTTTCAGTTTTCTTCATCATC 59.080 34.615 0.00 0.00 0.00 2.92
3698 6346 9.611284 TTTCAGTTTTCTTCATCATCATTAACG 57.389 29.630 0.00 0.00 0.00 3.18
3709 6357 5.833406 TCATCATTAACGCATTGGTCATT 57.167 34.783 0.00 0.00 0.00 2.57
3710 6358 5.580661 TCATCATTAACGCATTGGTCATTG 58.419 37.500 0.00 0.00 0.00 2.82
3738 6386 2.128771 ACCATGTTGTGCAGTATCCC 57.871 50.000 0.00 0.00 0.00 3.85
3757 6405 5.282436 TCCCTGGATGCTAGAAGAGATAT 57.718 43.478 0.00 0.00 0.00 1.63
3761 6409 6.397272 CCTGGATGCTAGAAGAGATATGTTC 58.603 44.000 0.00 0.00 0.00 3.18
3767 6415 5.893824 TGCTAGAAGAGATATGTTCAGGTCA 59.106 40.000 0.00 0.00 0.00 4.02
3789 6437 2.613725 CGTGGTTACCCCTTACCAGTTC 60.614 54.545 0.00 0.00 44.66 3.01
3915 6565 1.376424 CCAGATGGCAAGCGTCTGT 60.376 57.895 18.41 0.00 38.10 3.41
3999 6669 5.403897 TTCAAATGTCTCGAGTTGTTGTC 57.596 39.130 13.13 0.00 0.00 3.18
4185 6858 0.247736 CAAGAGTTCTGACCTCGGGG 59.752 60.000 0.00 0.00 38.88 5.73
4295 7052 7.652909 CCTTTTCTTGTTCATTTGAATACTGCA 59.347 33.333 0.00 0.00 36.33 4.41
4763 7521 5.787494 AGGCCCTCTTATAGATTCTAATGCA 59.213 40.000 0.00 0.00 0.00 3.96
4785 7543 5.869344 GCAAACTTTATTGGGATGAACTTCC 59.131 40.000 0.00 0.00 34.83 3.46
4978 7738 8.959548 ACAAGATGTGTGCTATCATTTTATTCA 58.040 29.630 0.00 0.00 39.72 2.57
5022 7782 7.054124 GTCATCATACCCTGGAATAAAACTGA 58.946 38.462 0.00 0.00 0.00 3.41
5042 7802 6.179756 ACTGATGTGCATCTGGTAAACAATA 58.820 36.000 18.62 0.00 39.96 1.90
5045 7805 8.153479 TGATGTGCATCTGGTAAACAATATAC 57.847 34.615 12.64 0.00 38.60 1.47
5046 7806 7.772757 TGATGTGCATCTGGTAAACAATATACA 59.227 33.333 12.64 0.00 38.60 2.29
5050 7810 9.051679 GTGCATCTGGTAAACAATATACATACA 57.948 33.333 0.00 0.00 0.00 2.29
5051 7811 9.271828 TGCATCTGGTAAACAATATACATACAG 57.728 33.333 0.00 0.00 0.00 2.74
5081 7848 5.355071 TGTGCCATTTGATTCTAGCTTACAG 59.645 40.000 0.00 0.00 0.00 2.74
5174 7941 8.143193 TCATGTCTATTGCTTGATTTGTTTGTT 58.857 29.630 0.00 0.00 0.00 2.83
5175 7942 8.767085 CATGTCTATTGCTTGATTTGTTTGTTT 58.233 29.630 0.00 0.00 0.00 2.83
5176 7943 8.129161 TGTCTATTGCTTGATTTGTTTGTTTG 57.871 30.769 0.00 0.00 0.00 2.93
5177 7944 7.763528 TGTCTATTGCTTGATTTGTTTGTTTGT 59.236 29.630 0.00 0.00 0.00 2.83
5178 7945 8.603181 GTCTATTGCTTGATTTGTTTGTTTGTT 58.397 29.630 0.00 0.00 0.00 2.83
5179 7946 9.160496 TCTATTGCTTGATTTGTTTGTTTGTTT 57.840 25.926 0.00 0.00 0.00 2.83
5567 8463 2.543777 TGAACGAAAGGAGGGAACAG 57.456 50.000 0.00 0.00 0.00 3.16
5617 8513 4.109766 TCCGCTATGACTAACGTGAATTG 58.890 43.478 0.00 0.00 0.00 2.32
5622 8518 7.380333 CCGCTATGACTAACGTGAATTGTTATA 59.620 37.037 0.00 0.00 31.85 0.98
5773 8673 2.604011 TCAATCGGCCGTTATTACAACG 59.396 45.455 27.15 6.29 42.74 4.10
5800 8700 2.630580 CAGACCTAGGGCATCTCTAACC 59.369 54.545 19.45 0.00 0.00 2.85
5808 8708 0.321996 GCATCTCTAACCGATCCCCC 59.678 60.000 0.00 0.00 0.00 5.40
5898 9216 3.649502 ACCTAACCGGTCCCCTATATTTG 59.350 47.826 8.04 0.00 44.93 2.32
5906 9224 5.249852 CCGGTCCCCTATATTTGGAAGATAA 59.750 44.000 0.00 0.00 0.00 1.75
5942 9260 1.993956 TTTAGCCAGCCACACACATT 58.006 45.000 0.00 0.00 0.00 2.71
5952 9270 4.025563 CAGCCACACACATTTCAACAATTG 60.026 41.667 3.24 3.24 0.00 2.32
5953 9271 3.303263 GCCACACACATTTCAACAATTGC 60.303 43.478 5.05 0.00 0.00 3.56
6033 9354 5.887598 ACCATGAACACACATATAGTTGCAT 59.112 36.000 0.00 0.00 0.00 3.96
6039 9360 4.751600 ACACACATATAGTTGCATGGATCG 59.248 41.667 0.00 0.00 0.00 3.69
6095 9416 6.395780 TCCAAAAGACCCCATTCATAACTA 57.604 37.500 0.00 0.00 0.00 2.24
6096 9417 6.795590 TCCAAAAGACCCCATTCATAACTAA 58.204 36.000 0.00 0.00 0.00 2.24
6098 9419 7.730784 TCCAAAAGACCCCATTCATAACTAAAA 59.269 33.333 0.00 0.00 0.00 1.52
6099 9420 8.371699 CCAAAAGACCCCATTCATAACTAAAAA 58.628 33.333 0.00 0.00 0.00 1.94
6188 9509 8.616076 CATAGAAAGAACCTAAAAGTGCCATAG 58.384 37.037 0.00 0.00 0.00 2.23
6313 9656 3.328535 TGCAGGAGTATGTAGGATGGA 57.671 47.619 0.00 0.00 0.00 3.41
6336 9680 7.147897 TGGAAAGATATGACGTGATAACTGACT 60.148 37.037 5.62 0.00 0.00 3.41
6354 9698 4.717991 TGACTGACACGACTTTGTTTTTG 58.282 39.130 0.00 0.00 0.00 2.44
6359 9703 6.866248 ACTGACACGACTTTGTTTTTGAAATT 59.134 30.769 0.00 0.00 0.00 1.82
6374 9718 6.694445 TTTGAAATTAAACACCCCCATGAT 57.306 33.333 0.00 0.00 0.00 2.45
6381 9725 0.764890 ACACCCCCATGATACCATCG 59.235 55.000 0.00 0.00 0.00 3.84
6386 9730 1.623311 CCCCATGATACCATCGCACTA 59.377 52.381 0.00 0.00 0.00 2.74
6387 9731 2.038426 CCCCATGATACCATCGCACTAA 59.962 50.000 0.00 0.00 0.00 2.24
6398 9742 3.184379 CCATCGCACTAAACATATGACCG 59.816 47.826 10.38 1.54 0.00 4.79
6523 9868 5.068987 CCACTTGACTTTCCCTCAAAAATCA 59.931 40.000 0.00 0.00 0.00 2.57
6531 9876 3.981212 TCCCTCAAAAATCATTCCCTCC 58.019 45.455 0.00 0.00 0.00 4.30
6552 9897 4.010349 CCAACTAGCCTTTCCTCGAAAAT 58.990 43.478 0.00 0.00 30.84 1.82
6601 9953 2.203084 GCTAGCCGAGCCTTTCCC 60.203 66.667 2.29 0.00 46.41 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.263905 GGATATGTCAAATATGGCCCCTCA 60.264 45.833 0.00 0.00 0.00 3.86
1 2 4.263905 TGGATATGTCAAATATGGCCCCTC 60.264 45.833 0.00 0.00 0.00 4.30
2 3 3.662148 TGGATATGTCAAATATGGCCCCT 59.338 43.478 0.00 0.00 0.00 4.79
3 4 4.019174 CTGGATATGTCAAATATGGCCCC 58.981 47.826 0.00 0.00 0.00 5.80
4 5 3.445096 GCTGGATATGTCAAATATGGCCC 59.555 47.826 0.00 0.00 0.00 5.80
5 6 4.157289 CAGCTGGATATGTCAAATATGGCC 59.843 45.833 5.57 0.00 0.00 5.36
6 7 4.763793 ACAGCTGGATATGTCAAATATGGC 59.236 41.667 19.93 0.00 0.00 4.40
7 8 7.389232 TCTACAGCTGGATATGTCAAATATGG 58.611 38.462 19.93 0.00 0.00 2.74
8 9 8.880750 CATCTACAGCTGGATATGTCAAATATG 58.119 37.037 19.93 0.00 0.00 1.78
9 10 7.551974 GCATCTACAGCTGGATATGTCAAATAT 59.448 37.037 21.70 0.00 0.00 1.28
10 11 6.875726 GCATCTACAGCTGGATATGTCAAATA 59.124 38.462 21.70 0.01 0.00 1.40
11 12 5.704515 GCATCTACAGCTGGATATGTCAAAT 59.295 40.000 21.70 0.00 0.00 2.32
12 13 5.059161 GCATCTACAGCTGGATATGTCAAA 58.941 41.667 21.70 0.00 0.00 2.69
13 14 4.346127 AGCATCTACAGCTGGATATGTCAA 59.654 41.667 21.70 0.00 41.61 3.18
14 15 3.899980 AGCATCTACAGCTGGATATGTCA 59.100 43.478 21.70 0.00 41.61 3.58
15 16 4.493547 GAGCATCTACAGCTGGATATGTC 58.506 47.826 21.70 15.12 43.58 3.06
16 17 4.533919 GAGCATCTACAGCTGGATATGT 57.466 45.455 21.70 11.21 43.58 2.29
40 41 9.712305 CCTCCAACTCGATGTAAAATAGATTAT 57.288 33.333 0.00 0.00 0.00 1.28
41 42 8.701895 ACCTCCAACTCGATGTAAAATAGATTA 58.298 33.333 0.00 0.00 0.00 1.75
42 43 7.565680 ACCTCCAACTCGATGTAAAATAGATT 58.434 34.615 0.00 0.00 0.00 2.40
43 44 7.125792 ACCTCCAACTCGATGTAAAATAGAT 57.874 36.000 0.00 0.00 0.00 1.98
63 64 8.547894 GTGAATTTTTACATCACCAAAAACCTC 58.452 33.333 0.00 0.00 36.68 3.85
129 130 3.825014 AGCATGTTCAATAGGGATGATGC 59.175 43.478 0.00 0.00 34.43 3.91
135 136 2.103094 CTCGGAGCATGTTCAATAGGGA 59.897 50.000 11.93 0.00 0.00 4.20
141 142 4.379394 GCATTTTACTCGGAGCATGTTCAA 60.379 41.667 11.93 0.00 0.00 2.69
146 147 3.496130 CCTAGCATTTTACTCGGAGCATG 59.504 47.826 4.58 4.10 0.00 4.06
260 265 2.951745 GGCGACGTCGATCTGCTG 60.952 66.667 39.74 10.32 43.02 4.41
284 297 2.638154 CGGCGAGACGGGATAGAC 59.362 66.667 0.00 0.00 0.00 2.59
313 330 2.898840 CTAGTCGGCGGCGAGGTA 60.899 66.667 35.53 25.62 0.00 3.08
396 416 7.601130 AGCAGTACAAACATTATACGAAGTTGA 59.399 33.333 0.00 0.00 37.78 3.18
559 589 5.990408 ACAAATCGTACTTGCAGAAAAGAG 58.010 37.500 0.00 0.00 0.00 2.85
781 811 4.472286 CAAAGCCAACTTGTATAACCACG 58.528 43.478 0.00 0.00 35.85 4.94
785 815 4.684242 GCAACCAAAGCCAACTTGTATAAC 59.316 41.667 0.00 0.00 35.85 1.89
935 966 9.228636 GCAAACTTAACGAAGTCAAGAAATTAA 57.771 29.630 0.00 0.00 45.50 1.40
936 967 8.617809 AGCAAACTTAACGAAGTCAAGAAATTA 58.382 29.630 0.00 0.00 45.50 1.40
937 968 7.480810 AGCAAACTTAACGAAGTCAAGAAATT 58.519 30.769 0.00 0.00 45.50 1.82
938 969 7.027778 AGCAAACTTAACGAAGTCAAGAAAT 57.972 32.000 0.00 0.00 45.50 2.17
1055 1086 3.205338 TCGCAGAATGGTTACCATGATG 58.795 45.455 18.48 18.81 44.40 3.07
1110 1141 2.187707 GCGCACTTTAATCTGCAATGG 58.812 47.619 0.30 0.00 32.57 3.16
1203 1234 1.862602 AAAACATGGAAGGCCGCGAC 61.863 55.000 8.23 0.00 36.79 5.19
1315 1346 2.437651 TCAGTCAACATCCCAGTTGTGA 59.562 45.455 6.70 2.29 46.78 3.58
1485 1683 8.548721 CCCGTATGTATTTTGTAGTGAAATCTC 58.451 37.037 0.00 0.00 0.00 2.75
1486 1684 8.044908 ACCCGTATGTATTTTGTAGTGAAATCT 58.955 33.333 0.00 0.00 0.00 2.40
1487 1685 8.120465 CACCCGTATGTATTTTGTAGTGAAATC 58.880 37.037 0.00 0.00 0.00 2.17
1488 1686 7.608761 ACACCCGTATGTATTTTGTAGTGAAAT 59.391 33.333 0.00 0.00 0.00 2.17
1489 1687 6.935771 ACACCCGTATGTATTTTGTAGTGAAA 59.064 34.615 0.00 0.00 0.00 2.69
1491 1689 6.040209 ACACCCGTATGTATTTTGTAGTGA 57.960 37.500 0.00 0.00 0.00 3.41
1496 1694 9.918630 GTCTATATACACCCGTATGTATTTTGT 57.081 33.333 12.48 0.00 41.98 2.83
1497 1695 9.917129 TGTCTATATACACCCGTATGTATTTTG 57.083 33.333 12.48 7.56 41.98 2.44
1535 1733 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
1537 1735 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
1538 1736 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
1539 1737 5.525378 AGATACGGAGCAAAATGAGTGAATC 59.475 40.000 0.00 0.00 0.00 2.52
1541 1739 4.832248 AGATACGGAGCAAAATGAGTGAA 58.168 39.130 0.00 0.00 0.00 3.18
1542 1740 4.471904 AGATACGGAGCAAAATGAGTGA 57.528 40.909 0.00 0.00 0.00 3.41
1543 1741 5.352284 ACTAGATACGGAGCAAAATGAGTG 58.648 41.667 0.00 0.00 0.00 3.51
1544 1742 5.452077 GGACTAGATACGGAGCAAAATGAGT 60.452 44.000 0.00 0.00 0.00 3.41
1545 1743 4.985409 GGACTAGATACGGAGCAAAATGAG 59.015 45.833 0.00 0.00 0.00 2.90
1546 1744 4.404394 TGGACTAGATACGGAGCAAAATGA 59.596 41.667 0.00 0.00 0.00 2.57
1549 1747 5.597182 ACTATGGACTAGATACGGAGCAAAA 59.403 40.000 0.00 0.00 0.00 2.44
1550 1748 5.009710 CACTATGGACTAGATACGGAGCAAA 59.990 44.000 0.00 0.00 0.00 3.68
1551 1749 4.519350 CACTATGGACTAGATACGGAGCAA 59.481 45.833 0.00 0.00 0.00 3.91
1552 1750 4.072839 CACTATGGACTAGATACGGAGCA 58.927 47.826 0.00 0.00 0.00 4.26
1553 1751 3.440872 CCACTATGGACTAGATACGGAGC 59.559 52.174 0.00 0.00 40.96 4.70
1554 1752 4.907809 TCCACTATGGACTAGATACGGAG 58.092 47.826 0.00 0.00 42.67 4.63
1555 1753 4.987963 TCCACTATGGACTAGATACGGA 57.012 45.455 0.00 0.00 42.67 4.69
1566 1764 8.380742 AGTCTTTTTAGAGATTCCACTATGGA 57.619 34.615 0.00 0.00 46.61 3.41
1583 1781 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
1584 1782 8.765517 TCCTCCGTTCCTAAATATAAGTCTTTT 58.234 33.333 0.00 0.00 0.00 2.27
1585 1783 8.315220 TCCTCCGTTCCTAAATATAAGTCTTT 57.685 34.615 0.00 0.00 0.00 2.52
1586 1784 7.909485 TCCTCCGTTCCTAAATATAAGTCTT 57.091 36.000 0.00 0.00 0.00 3.01
1587 1785 7.564292 ACTTCCTCCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
1588 1786 7.724287 ACTTCCTCCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
1589 1787 7.672122 ACTTCCTCCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
1593 1791 9.771140 AGATATACTTCCTCCGTTCCTAAATAT 57.229 33.333 0.00 0.00 0.00 1.28
1599 1797 6.408206 CCAAAAGATATACTTCCTCCGTTCCT 60.408 42.308 0.00 0.00 37.93 3.36
1602 1800 5.397559 CCCCAAAAGATATACTTCCTCCGTT 60.398 44.000 0.00 0.00 37.93 4.44
1610 1808 4.881157 AGTGCCCCCAAAAGATATACTT 57.119 40.909 0.00 0.00 40.98 2.24
1641 1839 5.126396 AGGTTTGCATAACTGAAAAGAGC 57.874 39.130 0.00 0.00 30.23 4.09
1700 1898 7.936847 TCCAGTCTAGCAAAAGAATAAAGTGAA 59.063 33.333 0.00 0.00 0.00 3.18
1742 1940 7.868415 CCCGACAAAGTCACCATTAAAATAAAA 59.132 33.333 0.00 0.00 32.09 1.52
1745 1943 6.239396 TCCCGACAAAGTCACCATTAAAATA 58.761 36.000 0.00 0.00 32.09 1.40
1908 2106 7.953752 AGACTTATATTTAGGAACGGAAGGAG 58.046 38.462 0.00 0.00 0.00 3.69
1909 2107 7.909485 AGACTTATATTTAGGAACGGAAGGA 57.091 36.000 0.00 0.00 0.00 3.36
1910 2108 8.959705 AAAGACTTATATTTAGGAACGGAAGG 57.040 34.615 0.00 0.00 0.00 3.46
1911 2109 9.819267 AGAAAGACTTATATTTAGGAACGGAAG 57.181 33.333 0.00 0.00 0.00 3.46
1987 2185 6.092259 ACGGAGCAAAATAAGTGAATCTACAC 59.908 38.462 0.00 0.00 40.60 2.90
1988 2186 6.170506 ACGGAGCAAAATAAGTGAATCTACA 58.829 36.000 0.00 0.00 0.00 2.74
1989 2187 6.663944 ACGGAGCAAAATAAGTGAATCTAC 57.336 37.500 0.00 0.00 0.00 2.59
1993 2191 7.254795 GCTACATACGGAGCAAAATAAGTGAAT 60.255 37.037 0.00 0.00 38.62 2.57
1995 2193 5.522460 GCTACATACGGAGCAAAATAAGTGA 59.478 40.000 0.00 0.00 38.62 3.41
1998 2196 4.213482 GGGCTACATACGGAGCAAAATAAG 59.787 45.833 0.00 0.00 40.64 1.73
1999 2197 4.131596 GGGCTACATACGGAGCAAAATAA 58.868 43.478 0.00 0.00 40.64 1.40
2000 2198 3.134985 TGGGCTACATACGGAGCAAAATA 59.865 43.478 0.00 0.00 40.64 1.40
2001 2199 2.092646 TGGGCTACATACGGAGCAAAAT 60.093 45.455 0.00 0.00 40.64 1.82
2003 2201 0.906066 TGGGCTACATACGGAGCAAA 59.094 50.000 0.00 0.00 40.64 3.68
2004 2202 1.128200 ATGGGCTACATACGGAGCAA 58.872 50.000 0.00 0.00 40.64 3.91
2005 2203 2.003937 TATGGGCTACATACGGAGCA 57.996 50.000 0.00 0.00 41.03 4.26
2006 2204 3.056107 TCAATATGGGCTACATACGGAGC 60.056 47.826 4.22 0.00 44.41 4.70
2007 2205 4.801330 TCAATATGGGCTACATACGGAG 57.199 45.455 4.22 0.00 44.41 4.63
2008 2206 5.554437 TTTCAATATGGGCTACATACGGA 57.446 39.130 4.22 3.27 44.41 4.69
2009 2207 6.173339 AGATTTCAATATGGGCTACATACGG 58.827 40.000 4.22 1.38 44.41 4.02
2010 2208 7.099764 AGAGATTTCAATATGGGCTACATACG 58.900 38.462 4.22 0.00 44.41 3.06
2013 2211 9.866655 TTTTAGAGATTTCAATATGGGCTACAT 57.133 29.630 0.46 0.46 43.68 2.29
2014 2212 9.693739 TTTTTAGAGATTTCAATATGGGCTACA 57.306 29.630 0.00 0.00 0.00 2.74
2018 2216 8.907885 AGTCTTTTTAGAGATTTCAATATGGGC 58.092 33.333 0.00 0.00 0.00 5.36
2033 2231 9.595823 CCGTTCCTAAATATCAGTCTTTTTAGA 57.404 33.333 0.00 0.00 34.90 2.10
2037 2235 7.048512 CCTCCGTTCCTAAATATCAGTCTTTT 58.951 38.462 0.00 0.00 0.00 2.27
2038 2236 6.408206 CCCTCCGTTCCTAAATATCAGTCTTT 60.408 42.308 0.00 0.00 0.00 2.52
2039 2237 5.070580 CCCTCCGTTCCTAAATATCAGTCTT 59.929 44.000 0.00 0.00 0.00 3.01
2041 2239 4.587684 TCCCTCCGTTCCTAAATATCAGTC 59.412 45.833 0.00 0.00 0.00 3.51
2043 2241 4.589374 ACTCCCTCCGTTCCTAAATATCAG 59.411 45.833 0.00 0.00 0.00 2.90
2044 2242 4.553678 ACTCCCTCCGTTCCTAAATATCA 58.446 43.478 0.00 0.00 0.00 2.15
2045 2243 5.537674 TGTACTCCCTCCGTTCCTAAATATC 59.462 44.000 0.00 0.00 0.00 1.63
2046 2244 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
2047 2245 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
2048 2246 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
2049 2247 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
2050 2248 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
2052 2250 1.486211 CATGTACTCCCTCCGTTCCT 58.514 55.000 0.00 0.00 0.00 3.36
2053 2251 0.179081 GCATGTACTCCCTCCGTTCC 60.179 60.000 0.00 0.00 0.00 3.62
2054 2252 0.824759 AGCATGTACTCCCTCCGTTC 59.175 55.000 0.00 0.00 0.00 3.95
2055 2253 1.207329 GAAGCATGTACTCCCTCCGTT 59.793 52.381 0.00 0.00 0.00 4.44
2056 2254 0.824759 GAAGCATGTACTCCCTCCGT 59.175 55.000 0.00 0.00 0.00 4.69
2059 2257 5.071115 AGGATAAAGAAGCATGTACTCCCTC 59.929 44.000 0.00 0.00 0.00 4.30
2060 2258 4.971924 AGGATAAAGAAGCATGTACTCCCT 59.028 41.667 0.00 0.00 0.00 4.20
2061 2259 5.297569 AGGATAAAGAAGCATGTACTCCC 57.702 43.478 0.00 0.00 0.00 4.30
2062 2260 5.760743 GGAAGGATAAAGAAGCATGTACTCC 59.239 44.000 0.00 0.00 0.00 3.85
2063 2261 5.760743 GGGAAGGATAAAGAAGCATGTACTC 59.239 44.000 0.00 0.00 0.00 2.59
2064 2262 5.430089 AGGGAAGGATAAAGAAGCATGTACT 59.570 40.000 0.00 0.00 0.00 2.73
2065 2263 5.529060 CAGGGAAGGATAAAGAAGCATGTAC 59.471 44.000 0.00 0.00 0.00 2.90
2066 2264 5.191722 ACAGGGAAGGATAAAGAAGCATGTA 59.808 40.000 0.00 0.00 0.00 2.29
2089 2313 7.015877 GTGCATACAAACTAGTAAGCTCAAAC 58.984 38.462 0.00 0.00 38.93 2.93
2352 2892 4.156739 GGTCATCTCAATGGGTTCAGAAAC 59.843 45.833 0.00 0.00 33.42 2.78
2353 2893 4.335416 GGTCATCTCAATGGGTTCAGAAA 58.665 43.478 0.00 0.00 33.42 2.52
2356 2896 2.025981 TGGGTCATCTCAATGGGTTCAG 60.026 50.000 0.00 0.00 33.42 3.02
2358 2898 2.806945 TGGGTCATCTCAATGGGTTC 57.193 50.000 0.00 0.00 33.42 3.62
2360 2900 2.278245 TCTTGGGTCATCTCAATGGGT 58.722 47.619 0.00 0.00 33.42 4.51
2362 2902 5.449588 CGAAATTCTTGGGTCATCTCAATGG 60.450 44.000 0.00 0.00 33.42 3.16
2363 2903 5.575957 CGAAATTCTTGGGTCATCTCAATG 58.424 41.667 0.00 0.00 0.00 2.82
2365 2905 3.440173 GCGAAATTCTTGGGTCATCTCAA 59.560 43.478 0.00 0.00 0.00 3.02
2367 2907 3.064545 CAGCGAAATTCTTGGGTCATCTC 59.935 47.826 0.00 0.00 0.00 2.75
2368 2908 3.012518 CAGCGAAATTCTTGGGTCATCT 58.987 45.455 0.00 0.00 0.00 2.90
2370 2910 2.795329 ACAGCGAAATTCTTGGGTCAT 58.205 42.857 0.00 0.00 0.00 3.06
2372 2912 3.565516 GAAACAGCGAAATTCTTGGGTC 58.434 45.455 0.00 0.00 0.00 4.46
2375 2915 3.536158 TCGAAACAGCGAAATTCTTGG 57.464 42.857 0.00 0.00 37.35 3.61
2377 2917 5.107875 GCAAAATCGAAACAGCGAAATTCTT 60.108 36.000 0.00 0.00 44.22 2.52
2378 2918 4.382754 GCAAAATCGAAACAGCGAAATTCT 59.617 37.500 0.00 0.00 44.22 2.40
2379 2919 4.382754 AGCAAAATCGAAACAGCGAAATTC 59.617 37.500 0.00 0.00 44.22 2.17
2380 2920 4.298332 AGCAAAATCGAAACAGCGAAATT 58.702 34.783 0.00 0.00 44.22 1.82
2381 2921 3.900941 AGCAAAATCGAAACAGCGAAAT 58.099 36.364 0.00 0.00 44.22 2.17
2383 2923 3.042189 CAAGCAAAATCGAAACAGCGAA 58.958 40.909 0.00 0.00 44.22 4.70
2385 2925 2.384382 ACAAGCAAAATCGAAACAGCG 58.616 42.857 0.00 0.00 0.00 5.18
2386 2926 3.602265 GCAACAAGCAAAATCGAAACAGC 60.602 43.478 0.00 0.00 44.79 4.40
2387 2927 3.360956 CGCAACAAGCAAAATCGAAACAG 60.361 43.478 0.00 0.00 46.13 3.16
2388 2928 2.533535 CGCAACAAGCAAAATCGAAACA 59.466 40.909 0.00 0.00 46.13 2.83
2389 2929 2.786578 TCGCAACAAGCAAAATCGAAAC 59.213 40.909 0.00 0.00 46.13 2.78
2391 2931 2.765108 TCGCAACAAGCAAAATCGAA 57.235 40.000 0.00 0.00 46.13 3.71
2393 2933 2.384382 AGTTCGCAACAAGCAAAATCG 58.616 42.857 0.00 0.00 46.13 3.34
2395 2935 5.752955 ACAATAAGTTCGCAACAAGCAAAAT 59.247 32.000 0.00 0.00 46.13 1.82
2396 2936 5.105752 ACAATAAGTTCGCAACAAGCAAAA 58.894 33.333 0.00 0.00 46.13 2.44
2589 5121 0.877071 CCATCATATTGGCGCAGACC 59.123 55.000 10.83 0.00 25.51 3.85
2664 5202 4.612264 AAAGGCAAATGCTCTCAAATGT 57.388 36.364 5.25 0.00 41.70 2.71
2709 5247 5.666462 TCTGCTACTTGTTCAGTTACACAA 58.334 37.500 0.00 0.00 36.88 3.33
2802 5344 1.270907 ACATGGACACCAGACTCCTC 58.729 55.000 0.00 0.00 36.75 3.71
2807 5349 1.880027 GGTTCAACATGGACACCAGAC 59.120 52.381 0.00 0.00 36.75 3.51
2879 5421 9.442047 AACAACAAAGAAAATGGTGAAAATACA 57.558 25.926 0.00 0.00 37.71 2.29
2982 5525 6.524734 TCATAGGTATGCATCACTACCAAAG 58.475 40.000 16.79 7.19 39.94 2.77
3056 5647 5.367945 TCTTTTCTTACTTGTGTCCCTGT 57.632 39.130 0.00 0.00 0.00 4.00
3475 6123 9.996554 TCACATATAGTACATATGGAAGGTTTG 57.003 33.333 20.09 12.30 36.56 2.93
3531 6179 9.187996 TGACCAATGATCAACATGTAACATTAT 57.812 29.630 0.00 1.80 39.39 1.28
3666 6314 6.206395 TGATGAAGAAAACTGAAAGCAACA 57.794 33.333 0.00 0.00 37.60 3.33
3667 6315 6.919662 TGATGATGAAGAAAACTGAAAGCAAC 59.080 34.615 0.00 0.00 37.60 4.17
3681 6329 5.589855 ACCAATGCGTTAATGATGATGAAGA 59.410 36.000 0.00 0.00 0.00 2.87
3691 6339 5.456497 GTGATCAATGACCAATGCGTTAATG 59.544 40.000 0.00 0.00 0.00 1.90
3698 6346 5.105797 TGGTAAAGTGATCAATGACCAATGC 60.106 40.000 21.57 2.64 32.69 3.56
3709 6357 4.140536 TGCACAACATGGTAAAGTGATCA 58.859 39.130 3.99 0.00 32.14 2.92
3710 6358 4.216257 ACTGCACAACATGGTAAAGTGATC 59.784 41.667 3.99 0.00 32.14 2.92
3738 6386 6.990798 TGAACATATCTCTTCTAGCATCCAG 58.009 40.000 0.00 0.00 0.00 3.86
3757 6405 1.202557 GGTAACCACGTGACCTGAACA 60.203 52.381 19.30 0.00 34.30 3.18
3789 6437 3.195825 AGAAATAACTCACCGTCCTCCAG 59.804 47.826 0.00 0.00 0.00 3.86
4295 7052 9.622004 CAATTAACGATATACGGTGAGAGTAAT 57.378 33.333 0.00 0.00 43.76 1.89
4648 7406 8.985315 AGATATGCTGATGGATTAAACTGAAA 57.015 30.769 0.00 0.00 0.00 2.69
4763 7521 7.310609 CCATGGAAGTTCATCCCAATAAAGTTT 60.311 37.037 5.56 0.00 38.82 2.66
4785 7543 1.821136 GGGAGTTTCTTCCAAGCCATG 59.179 52.381 0.00 0.00 39.09 3.66
5022 7782 8.696043 ATGTATATTGTTTACCAGATGCACAT 57.304 30.769 0.00 0.00 0.00 3.21
5058 7818 5.586243 TCTGTAAGCTAGAATCAAATGGCAC 59.414 40.000 0.00 0.00 0.00 5.01
5059 7819 5.586243 GTCTGTAAGCTAGAATCAAATGGCA 59.414 40.000 0.00 0.00 0.00 4.92
5179 7946 9.809096 TGAACAAGCAAGATAAACAAACAAATA 57.191 25.926 0.00 0.00 0.00 1.40
5180 7947 8.715191 TGAACAAGCAAGATAAACAAACAAAT 57.285 26.923 0.00 0.00 0.00 2.32
5181 7948 8.602328 CATGAACAAGCAAGATAAACAAACAAA 58.398 29.630 0.00 0.00 0.00 2.83
5182 7949 7.763528 ACATGAACAAGCAAGATAAACAAACAA 59.236 29.630 0.00 0.00 0.00 2.83
5617 8513 5.063204 TGACAATACAGGCATGGCTATAAC 58.937 41.667 22.88 9.05 0.00 1.89
5622 8518 2.094675 GTTGACAATACAGGCATGGCT 58.905 47.619 17.44 17.44 0.00 4.75
5672 8568 3.195610 CCACTGATGCTTACTACACAGGA 59.804 47.826 0.00 0.00 0.00 3.86
5762 8662 3.120095 GGTCTGTTGCCCGTTGTAATAAC 60.120 47.826 0.00 0.00 0.00 1.89
5773 8673 1.926426 ATGCCCTAGGTCTGTTGCCC 61.926 60.000 8.29 0.00 0.00 5.36
5800 8700 2.499289 CTCCTCTGAATATGGGGGATCG 59.501 54.545 0.00 0.00 0.00 3.69
5808 8708 6.181190 TCTACCGTATCCTCCTCTGAATATG 58.819 44.000 0.00 0.00 0.00 1.78
5912 9230 4.760204 GTGGCTGGCTAAAAGAACTAAGAA 59.240 41.667 2.00 0.00 0.00 2.52
5913 9231 4.202419 TGTGGCTGGCTAAAAGAACTAAGA 60.202 41.667 2.00 0.00 0.00 2.10
5914 9232 4.072131 TGTGGCTGGCTAAAAGAACTAAG 58.928 43.478 2.00 0.00 0.00 2.18
5915 9233 3.818773 GTGTGGCTGGCTAAAAGAACTAA 59.181 43.478 2.00 0.00 0.00 2.24
5916 9234 3.181449 TGTGTGGCTGGCTAAAAGAACTA 60.181 43.478 2.00 0.00 0.00 2.24
5918 9236 1.953686 TGTGTGGCTGGCTAAAAGAAC 59.046 47.619 2.00 0.00 0.00 3.01
5985 9306 8.180920 GGTTTTTGTTGTTAAGCATGTTGAATT 58.819 29.630 0.00 0.00 0.00 2.17
5990 9311 7.014092 CATGGTTTTTGTTGTTAAGCATGTT 57.986 32.000 14.60 0.00 45.54 2.71
6033 9354 7.374272 TGTTTTAATTTGAATTGCTCGATCCA 58.626 30.769 0.00 0.00 0.00 3.41
6039 9360 9.615295 ATTTGCATGTTTTAATTTGAATTGCTC 57.385 25.926 0.00 0.00 0.00 4.26
6096 9417 9.601217 CACCTACTAGTCTATGCAATTAGTTTT 57.399 33.333 0.00 0.00 0.00 2.43
6098 9419 8.198109 CACACCTACTAGTCTATGCAATTAGTT 58.802 37.037 0.00 0.00 0.00 2.24
6099 9420 7.342284 ACACACCTACTAGTCTATGCAATTAGT 59.658 37.037 0.00 0.00 0.00 2.24
6188 9509 0.179051 TGTCGTTTGTGTACCACCCC 60.179 55.000 0.00 0.00 32.73 4.95
6238 9559 6.646240 ACATCTTGCAACAACATAAATCCAAC 59.354 34.615 0.00 0.00 0.00 3.77
6291 9634 5.010708 TCCATCCTACATACTCCTGCATA 57.989 43.478 0.00 0.00 0.00 3.14
6292 9635 3.861846 TCCATCCTACATACTCCTGCAT 58.138 45.455 0.00 0.00 0.00 3.96
6313 9656 7.702772 GTCAGTCAGTTATCACGTCATATCTTT 59.297 37.037 0.00 0.00 0.00 2.52
6336 9680 8.744008 TTAATTTCAAAAACAAAGTCGTGTCA 57.256 26.923 0.00 0.00 0.00 3.58
6354 9698 5.659079 TGGTATCATGGGGGTGTTTAATTTC 59.341 40.000 0.00 0.00 0.00 2.17
6359 9703 3.181449 CGATGGTATCATGGGGGTGTTTA 60.181 47.826 0.00 0.00 32.98 2.01
6374 9718 5.294356 GGTCATATGTTTAGTGCGATGGTA 58.706 41.667 1.90 0.00 0.00 3.25
6381 9725 4.865925 TGTACACGGTCATATGTTTAGTGC 59.134 41.667 16.80 9.56 0.00 4.40
6386 9730 3.869065 CCCTGTACACGGTCATATGTTT 58.131 45.455 1.90 0.00 0.00 2.83
6387 9731 2.419574 GCCCTGTACACGGTCATATGTT 60.420 50.000 11.86 0.00 0.00 2.71
6398 9742 1.621814 TGTAACCTCAGCCCTGTACAC 59.378 52.381 0.00 0.00 0.00 2.90
6447 9791 5.794894 AGGTTGTACCATGTTAGACTCTTG 58.205 41.667 0.00 0.00 41.95 3.02
6449 9793 8.693625 GTTATAGGTTGTACCATGTTAGACTCT 58.306 37.037 0.00 0.00 41.95 3.24
6450 9794 8.472413 TGTTATAGGTTGTACCATGTTAGACTC 58.528 37.037 0.00 0.00 41.95 3.36
6451 9795 8.255905 GTGTTATAGGTTGTACCATGTTAGACT 58.744 37.037 0.00 0.00 41.95 3.24
6452 9796 8.036575 TGTGTTATAGGTTGTACCATGTTAGAC 58.963 37.037 0.00 0.00 41.95 2.59
6453 9797 8.036575 GTGTGTTATAGGTTGTACCATGTTAGA 58.963 37.037 0.00 0.00 41.95 2.10
6454 9798 8.038944 AGTGTGTTATAGGTTGTACCATGTTAG 58.961 37.037 0.00 0.00 41.95 2.34
6483 9827 0.036388 GTGGAAGGAAGGATCGCACA 60.036 55.000 0.00 0.00 0.00 4.57
6523 9868 2.242452 GGAAAGGCTAGTTGGAGGGAAT 59.758 50.000 0.00 0.00 0.00 3.01
6531 9876 6.927294 ATATTTTCGAGGAAAGGCTAGTTG 57.073 37.500 0.00 0.00 32.93 3.16
6552 9897 7.256691 GGAATGCTACTTTGGAGGGAAGATATA 60.257 40.741 0.00 0.00 0.00 0.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.