Multiple sequence alignment - TraesCS3D01G069700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G069700 chr3D 100.000 8403 0 0 1 8403 30682401 30673999 0.000000e+00 15518.0
1 TraesCS3D01G069700 chr3D 92.548 2496 113 40 5938 8399 30427933 30430389 0.000000e+00 3511.0
2 TraesCS3D01G069700 chr3D 91.990 1935 110 21 3016 4910 30423979 30425908 0.000000e+00 2673.0
3 TraesCS3D01G069700 chr3D 83.369 2369 263 71 5938 8242 30412388 30410087 0.000000e+00 2071.0
4 TraesCS3D01G069700 chr3D 87.745 816 90 6 3200 4011 30418464 30417655 0.000000e+00 944.0
5 TraesCS3D01G069700 chr3D 95.113 573 18 7 5006 5570 30425907 30426477 0.000000e+00 894.0
6 TraesCS3D01G069700 chr3D 82.483 1039 140 13 3027 4030 30415167 30414136 0.000000e+00 872.0
7 TraesCS3D01G069700 chr3D 96.247 453 9 2 347 791 5422726 5423178 0.000000e+00 736.0
8 TraesCS3D01G069700 chr3D 92.947 397 16 7 5562 5946 30427324 30427720 1.220000e-157 568.0
9 TraesCS3D01G069700 chr3D 89.796 245 25 0 4091 4335 30414098 30413854 1.760000e-81 315.0
10 TraesCS3D01G069700 chr3D 87.549 257 27 3 5340 5594 30413219 30412966 8.250000e-75 292.0
11 TraesCS3D01G069700 chr3D 89.820 167 14 3 4875 5039 71517679 71517844 2.380000e-50 211.0
12 TraesCS3D01G069700 chr3D 88.235 170 14 3 5057 5224 30413444 30413279 1.850000e-46 198.0
13 TraesCS3D01G069700 chr3D 88.166 169 17 3 4874 5040 426451859 426452026 1.850000e-46 198.0
14 TraesCS3D01G069700 chr3D 88.485 165 16 3 1979 2140 459309994 459309830 6.650000e-46 196.0
15 TraesCS3D01G069700 chr3D 84.667 150 13 2 1319 1458 440054618 440054767 3.160000e-29 141.0
16 TraesCS3D01G069700 chr3B 98.101 5055 60 10 2453 7498 53359695 53354668 0.000000e+00 8770.0
17 TraesCS3D01G069700 chr3B 84.490 1715 194 30 5938 7625 53219066 53217397 0.000000e+00 1628.0
18 TraesCS3D01G069700 chr3B 97.094 929 13 2 7478 8403 53351364 53350447 0.000000e+00 1554.0
19 TraesCS3D01G069700 chr3B 93.794 709 35 9 1441 2141 769548945 769549652 0.000000e+00 1057.0
20 TraesCS3D01G069700 chr3B 85.808 613 48 18 1032 1627 143589593 143590183 1.550000e-171 614.0
21 TraesCS3D01G069700 chr3B 84.053 533 61 13 1100 1627 769540228 769540741 7.580000e-135 492.0
22 TraesCS3D01G069700 chr3B 90.365 301 24 4 2142 2437 53365742 53365442 2.840000e-104 390.0
23 TraesCS3D01G069700 chr3B 77.993 568 80 22 7686 8242 53217289 53216756 1.760000e-81 315.0
24 TraesCS3D01G069700 chr3B 89.520 229 23 1 4092 4320 53220876 53220649 1.070000e-73 289.0
25 TraesCS3D01G069700 chr3B 88.298 188 18 2 5039 5224 53220167 53219982 1.100000e-53 222.0
26 TraesCS3D01G069700 chr3B 88.000 175 17 4 4874 5045 42630818 42630991 3.980000e-48 204.0
27 TraesCS3D01G069700 chr3A 93.233 2778 130 22 3200 5946 42378333 42381083 0.000000e+00 4036.0
28 TraesCS3D01G069700 chr3A 93.722 2437 95 21 5938 8334 42381281 42383699 0.000000e+00 3600.0
29 TraesCS3D01G069700 chr3A 83.537 2369 276 58 5938 8242 42367912 42365594 0.000000e+00 2109.0
30 TraesCS3D01G069700 chr3A 83.368 2375 264 69 5938 8242 42798147 42795834 0.000000e+00 2076.0
31 TraesCS3D01G069700 chr3A 81.436 1546 220 44 2813 4332 42801201 42799697 0.000000e+00 1203.0
32 TraesCS3D01G069700 chr3A 83.828 977 134 12 3038 3997 42371283 42370314 0.000000e+00 907.0
33 TraesCS3D01G069700 chr3A 82.483 1039 140 14 3027 4030 43293365 43292334 0.000000e+00 872.0
34 TraesCS3D01G069700 chr3A 84.965 858 97 7 3200 4030 43876555 43875703 0.000000e+00 841.0
35 TraesCS3D01G069700 chr3A 84.677 744 85 13 5938 6671 43290658 43289934 0.000000e+00 715.0
36 TraesCS3D01G069700 chr3A 86.941 559 51 8 396 939 459072888 459073439 7.210000e-170 608.0
37 TraesCS3D01G069700 chr3A 89.844 256 24 2 4080 4335 43292305 43292052 2.260000e-85 327.0
38 TraesCS3D01G069700 chr3A 89.844 256 24 2 4080 4335 43875674 43875421 2.260000e-85 327.0
39 TraesCS3D01G069700 chr3A 88.015 267 26 4 5340 5604 43291426 43291164 2.280000e-80 311.0
40 TraesCS3D01G069700 chr3A 87.640 267 27 4 5340 5604 43874795 43874533 1.060000e-78 305.0
41 TraesCS3D01G069700 chr3A 78.329 383 50 19 2862 3228 42377902 42378267 5.110000e-52 217.0
42 TraesCS3D01G069700 chr3A 88.571 175 16 4 4874 5045 34532449 34532622 8.550000e-50 209.0
43 TraesCS3D01G069700 chr3A 86.702 188 20 2 5039 5224 42799197 42799013 3.980000e-48 204.0
44 TraesCS3D01G069700 chr3A 90.210 143 12 2 5464 5604 42798870 42798728 1.440000e-42 185.0
45 TraesCS3D01G069700 chr3A 88.028 142 11 3 5057 5196 43291642 43291505 6.750000e-36 163.0
46 TraesCS3D01G069700 chr3A 88.028 142 11 3 5057 5196 43875011 43874874 6.750000e-36 163.0
47 TraesCS3D01G069700 chr3A 87.850 107 8 3 2703 2807 42377780 42377883 4.120000e-23 121.0
48 TraesCS3D01G069700 chr1B 95.922 1079 26 6 1 1062 417808549 417807472 0.000000e+00 1733.0
49 TraesCS3D01G069700 chr1B 98.851 87 1 0 1011 1097 417807475 417807389 1.130000e-33 156.0
50 TraesCS3D01G069700 chr1B 76.415 318 51 18 1319 1626 26714365 26714668 5.250000e-32 150.0
51 TraesCS3D01G069700 chr1B 100.000 32 0 0 40 71 417808625 417808594 9.110000e-05 60.2
52 TraesCS3D01G069700 chr6B 97.252 946 18 2 1 938 288937946 288937001 0.000000e+00 1596.0
53 TraesCS3D01G069700 chr6B 94.867 974 31 9 936 1892 288936919 288935948 0.000000e+00 1504.0
54 TraesCS3D01G069700 chrUn 86.739 1380 154 15 5955 7325 406952164 406950805 0.000000e+00 1507.0
55 TraesCS3D01G069700 chrUn 86.739 1380 154 15 5955 7325 406953632 406952273 0.000000e+00 1507.0
56 TraesCS3D01G069700 chrUn 82.454 1043 140 15 3024 4030 332581871 332582906 0.000000e+00 872.0
57 TraesCS3D01G069700 chrUn 89.238 604 62 3 6724 7325 472518170 472518772 0.000000e+00 752.0
58 TraesCS3D01G069700 chrUn 100.000 399 0 0 4213 4611 478850748 478851146 0.000000e+00 737.0
59 TraesCS3D01G069700 chrUn 90.119 253 23 2 4080 4332 332582935 332583185 2.260000e-85 327.0
60 TraesCS3D01G069700 chrUn 87.645 259 31 1 2142 2399 30899816 30899558 4.930000e-77 300.0
61 TraesCS3D01G069700 chrUn 88.372 215 21 2 5340 5553 332583814 332584025 1.080000e-63 255.0
62 TraesCS3D01G069700 chrUn 88.028 142 11 3 5057 5196 332583598 332583735 6.750000e-36 163.0
63 TraesCS3D01G069700 chrUn 79.747 158 20 2 1666 1823 281571456 281571311 4.150000e-18 104.0
64 TraesCS3D01G069700 chr4D 97.992 747 7 2 1 740 485601550 485600805 0.000000e+00 1290.0
65 TraesCS3D01G069700 chr4D 96.673 511 6 2 1051 1551 485598988 485598479 0.000000e+00 839.0
66 TraesCS3D01G069700 chr4D 94.301 544 13 6 1603 2142 485598484 485597955 0.000000e+00 817.0
67 TraesCS3D01G069700 chr4D 85.924 682 66 13 951 1627 354990576 354989920 0.000000e+00 701.0
68 TraesCS3D01G069700 chr4D 87.295 244 17 4 1913 2142 220916273 220916030 5.000000e-67 267.0
69 TraesCS3D01G069700 chr4D 89.941 169 12 5 1980 2145 462624568 462624402 6.610000e-51 213.0
70 TraesCS3D01G069700 chr4D 89.222 167 15 3 1979 2142 461224744 461224578 1.110000e-48 206.0
71 TraesCS3D01G069700 chr4D 96.629 89 3 0 964 1052 485600805 485600717 1.890000e-31 148.0
72 TraesCS3D01G069700 chr4D 91.139 79 7 0 1549 1627 363568424 363568346 3.210000e-19 108.0
73 TraesCS3D01G069700 chr4A 95.143 453 14 2 347 791 735991394 735990942 0.000000e+00 708.0
74 TraesCS3D01G069700 chr4A 87.308 260 31 2 2142 2399 633025205 633024946 6.380000e-76 296.0
75 TraesCS3D01G069700 chr2D 95.354 452 8 5 347 791 75412269 75412714 0.000000e+00 706.0
76 TraesCS3D01G069700 chr2D 84.956 565 60 12 396 943 639856671 639857227 4.430000e-152 549.0
77 TraesCS3D01G069700 chr2D 85.653 467 37 13 1170 1625 437384739 437385186 1.650000e-126 464.0
78 TraesCS3D01G069700 chr2D 90.526 285 15 4 1637 1909 47662378 47662662 4.790000e-97 366.0
79 TraesCS3D01G069700 chr2D 88.031 259 30 1 2142 2399 32977022 32976764 1.060000e-78 305.0
80 TraesCS3D01G069700 chr2D 86.008 243 20 4 1913 2141 35976330 35976572 1.810000e-61 248.0
81 TraesCS3D01G069700 chr2D 88.722 133 9 3 1032 1158 437375870 437376002 3.140000e-34 158.0
82 TraesCS3D01G069700 chr6A 95.143 453 11 3 347 791 576902224 576901775 0.000000e+00 704.0
83 TraesCS3D01G069700 chr6A 85.152 559 60 10 396 939 325208687 325209237 1.230000e-152 551.0
84 TraesCS3D01G069700 chr7B 94.518 456 21 4 1441 1892 576425790 576425335 0.000000e+00 701.0
85 TraesCS3D01G069700 chr7B 86.460 613 44 17 1032 1627 211418895 211418305 3.310000e-178 636.0
86 TraesCS3D01G069700 chr7B 85.106 611 47 19 1032 1625 128029079 128028496 1.220000e-162 584.0
87 TraesCS3D01G069700 chr7B 82.890 602 68 20 1032 1625 127750437 127749863 7.520000e-140 508.0
88 TraesCS3D01G069700 chr7B 91.509 106 7 2 2040 2143 502659680 502659785 2.440000e-30 145.0
89 TraesCS3D01G069700 chr6D 94.702 453 10 3 347 791 225595587 225596033 0.000000e+00 691.0
90 TraesCS3D01G069700 chr6D 94.040 453 13 3 347 791 21091406 21091852 0.000000e+00 675.0
91 TraesCS3D01G069700 chr6D 92.181 243 18 1 1 243 86853587 86853346 8.080000e-90 342.0
92 TraesCS3D01G069700 chr6D 91.358 243 20 1 1 243 86854245 86854004 1.750000e-86 331.0
93 TraesCS3D01G069700 chr6D 88.417 259 29 1 2142 2399 115189907 115189649 2.280000e-80 311.0
94 TraesCS3D01G069700 chr6D 89.881 168 14 3 4874 5039 304099452 304099286 6.610000e-51 213.0
95 TraesCS3D01G069700 chr6D 92.405 79 6 0 1549 1627 60311230 60311308 6.890000e-21 113.0
96 TraesCS3D01G069700 chr2A 87.500 560 48 8 396 939 507701107 507701660 1.990000e-175 627.0
97 TraesCS3D01G069700 chr2A 86.762 559 52 8 396 939 103211578 103211027 3.360000e-168 603.0
98 TraesCS3D01G069700 chr2A 88.353 249 27 2 2142 2388 83638023 83638271 1.770000e-76 298.0
99 TraesCS3D01G069700 chr5A 84.398 532 71 10 1101 1627 367609445 367608921 5.820000e-141 512.0
100 TraesCS3D01G069700 chr5A 87.259 259 32 1 2142 2399 685991285 685991027 2.290000e-75 294.0
101 TraesCS3D01G069700 chr5A 88.757 169 16 3 4874 5040 82869793 82869960 3.980000e-48 204.0
102 TraesCS3D01G069700 chr5A 81.720 186 29 5 7259 7442 24399831 24399649 5.250000e-32 150.0
103 TraesCS3D01G069700 chr1D 92.623 244 16 2 1 243 159983808 159984050 4.830000e-92 350.0
104 TraesCS3D01G069700 chr1D 90.123 243 21 2 1 243 159983159 159983398 6.330000e-81 313.0
105 TraesCS3D01G069700 chr1D 86.614 127 13 4 2041 2165 212108087 212108211 4.090000e-28 137.0
106 TraesCS3D01G069700 chr7D 89.575 259 26 1 2142 2399 14770304 14770046 2.260000e-85 327.0
107 TraesCS3D01G069700 chr7D 85.714 294 40 2 2142 2434 212816422 212816714 8.190000e-80 309.0
108 TraesCS3D01G069700 chr7D 87.861 173 16 5 4874 5043 530124002 530123832 1.850000e-46 198.0
109 TraesCS3D01G069700 chr7A 87.192 203 19 5 1101 1303 609439630 609439435 3.050000e-54 224.0
110 TraesCS3D01G069700 chr5D 92.857 126 8 1 1290 1414 357378618 357378493 1.860000e-41 182.0
111 TraesCS3D01G069700 chr5B 81.622 185 25 8 7264 7442 26851565 26851384 2.440000e-30 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G069700 chr3D 30673999 30682401 8402 True 15518.000000 15518 100.000000 1 8403 1 chr3D.!!$R1 8402
1 TraesCS3D01G069700 chr3D 30423979 30430389 6410 False 1911.500000 3511 93.149500 3016 8399 4 chr3D.!!$F5 5383
2 TraesCS3D01G069700 chr3D 30410087 30418464 8377 True 782.000000 2071 86.529500 3027 8242 6 chr3D.!!$R3 5215
3 TraesCS3D01G069700 chr3B 53350447 53359695 9248 True 5162.000000 8770 97.597500 2453 8403 2 chr3B.!!$R3 5950
4 TraesCS3D01G069700 chr3B 769548945 769549652 707 False 1057.000000 1057 93.794000 1441 2141 1 chr3B.!!$F4 700
5 TraesCS3D01G069700 chr3B 143589593 143590183 590 False 614.000000 614 85.808000 1032 1627 1 chr3B.!!$F2 595
6 TraesCS3D01G069700 chr3B 53216756 53220876 4120 True 613.500000 1628 85.075250 4092 8242 4 chr3B.!!$R2 4150
7 TraesCS3D01G069700 chr3B 769540228 769540741 513 False 492.000000 492 84.053000 1100 1627 1 chr3B.!!$F3 527
8 TraesCS3D01G069700 chr3A 42377780 42383699 5919 False 1993.500000 4036 88.283500 2703 8334 4 chr3A.!!$F3 5631
9 TraesCS3D01G069700 chr3A 42365594 42371283 5689 True 1508.000000 2109 83.682500 3038 8242 2 chr3A.!!$R1 5204
10 TraesCS3D01G069700 chr3A 42795834 42801201 5367 True 917.000000 2076 85.429000 2813 8242 4 chr3A.!!$R2 5429
11 TraesCS3D01G069700 chr3A 459072888 459073439 551 False 608.000000 608 86.941000 396 939 1 chr3A.!!$F2 543
12 TraesCS3D01G069700 chr3A 43289934 43293365 3431 True 477.600000 872 86.609400 3027 6671 5 chr3A.!!$R3 3644
13 TraesCS3D01G069700 chr3A 43874533 43876555 2022 True 409.000000 841 87.619250 3200 5604 4 chr3A.!!$R4 2404
14 TraesCS3D01G069700 chr1B 417807389 417808625 1236 True 649.733333 1733 98.257667 1 1097 3 chr1B.!!$R1 1096
15 TraesCS3D01G069700 chr6B 288935948 288937946 1998 True 1550.000000 1596 96.059500 1 1892 2 chr6B.!!$R1 1891
16 TraesCS3D01G069700 chrUn 406950805 406953632 2827 True 1507.000000 1507 86.739000 5955 7325 2 chrUn.!!$R3 1370
17 TraesCS3D01G069700 chrUn 472518170 472518772 602 False 752.000000 752 89.238000 6724 7325 1 chrUn.!!$F1 601
18 TraesCS3D01G069700 chrUn 332581871 332584025 2154 False 404.250000 872 87.243250 3024 5553 4 chrUn.!!$F3 2529
19 TraesCS3D01G069700 chr4D 485597955 485601550 3595 True 773.500000 1290 96.398750 1 2142 4 chr4D.!!$R6 2141
20 TraesCS3D01G069700 chr4D 354989920 354990576 656 True 701.000000 701 85.924000 951 1627 1 chr4D.!!$R2 676
21 TraesCS3D01G069700 chr2D 639856671 639857227 556 False 549.000000 549 84.956000 396 943 1 chr2D.!!$F6 547
22 TraesCS3D01G069700 chr6A 325208687 325209237 550 False 551.000000 551 85.152000 396 939 1 chr6A.!!$F1 543
23 TraesCS3D01G069700 chr7B 211418305 211418895 590 True 636.000000 636 86.460000 1032 1627 1 chr7B.!!$R3 595
24 TraesCS3D01G069700 chr7B 128028496 128029079 583 True 584.000000 584 85.106000 1032 1625 1 chr7B.!!$R2 593
25 TraesCS3D01G069700 chr7B 127749863 127750437 574 True 508.000000 508 82.890000 1032 1625 1 chr7B.!!$R1 593
26 TraesCS3D01G069700 chr6D 86853346 86854245 899 True 336.500000 342 91.769500 1 243 2 chr6D.!!$R3 242
27 TraesCS3D01G069700 chr2A 507701107 507701660 553 False 627.000000 627 87.500000 396 939 1 chr2A.!!$F2 543
28 TraesCS3D01G069700 chr2A 103211027 103211578 551 True 603.000000 603 86.762000 396 939 1 chr2A.!!$R1 543
29 TraesCS3D01G069700 chr5A 367608921 367609445 524 True 512.000000 512 84.398000 1101 1627 1 chr5A.!!$R2 526
30 TraesCS3D01G069700 chr1D 159983159 159984050 891 False 331.500000 350 91.373000 1 243 2 chr1D.!!$F2 242

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1454 3970 3.093057 TCTCCTTCTCCTTTCTTCCTCG 58.907 50.0 0.00 0.00 0.00 4.63 F
2289 4817 0.032540 AATCGTTATCCCGCGGGTAC 59.967 55.0 41.57 32.51 36.47 3.34 F
2357 4885 0.170339 CGCGTGTGTGAGGATGAGTA 59.830 55.0 0.00 0.00 0.00 2.59 F
2387 4915 0.179189 GGCGCACAACATGAAGTAGC 60.179 55.0 10.83 6.55 0.00 3.58 F
2393 4921 0.447801 CAACATGAAGTAGCCACGCC 59.552 55.0 0.00 0.00 0.00 5.68 F
5362 8140 0.179137 TTGCATCTCGTAGCTGACCG 60.179 55.0 0.00 0.00 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2813 5349 0.096976 CGAGAAATTGCGAACGCCAT 59.903 50.000 16.27 8.28 41.09 4.40 R
3160 5714 4.333372 TGAAGCTGTATACATCGTACGTGA 59.667 41.667 16.05 0.00 0.00 4.35 R
4793 7535 3.056313 GCAAATCAGGCCAGGCGTC 62.056 63.158 5.01 0.00 0.00 5.19 R
5362 8140 1.114627 GGGGGATGTTCTCAAATGCC 58.885 55.000 0.00 0.00 33.75 4.40 R
5457 8828 4.337985 CAAGACATGCTGACAAGACATC 57.662 45.455 0.00 0.00 0.00 3.06 R
8078 16148 0.107654 ACGGGCCATCTGTTAAGAGC 60.108 55.000 4.39 0.00 35.37 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1454 3970 3.093057 TCTCCTTCTCCTTTCTTCCTCG 58.907 50.000 0.00 0.00 0.00 4.63
2008 4532 0.611062 CTGGTGGAGGACTCGGTACA 60.611 60.000 0.00 0.00 0.00 2.90
2024 4548 5.243981 TCGGTACATGATTTTTCCGGTTAA 58.756 37.500 0.00 0.00 38.70 2.01
2067 4591 4.591924 CGGAGGAGGTACCAAAATAGGTAT 59.408 45.833 15.94 0.00 45.32 2.73
2100 4626 2.159612 GCGAGGTGGGACGAAAATAAAC 60.160 50.000 0.00 0.00 0.00 2.01
2109 4635 3.747529 GGACGAAAATAAACCTGGAACGA 59.252 43.478 0.00 0.00 0.00 3.85
2113 4639 5.049886 ACGAAAATAAACCTGGAACGAAGAC 60.050 40.000 0.00 0.00 0.00 3.01
2123 4651 2.093394 TGGAACGAAGACACCAACTGAA 60.093 45.455 0.00 0.00 0.00 3.02
2149 4677 7.818642 ACATTAGGAGTAGAGATATTACACGC 58.181 38.462 0.00 0.00 0.00 5.34
2150 4678 7.447545 ACATTAGGAGTAGAGATATTACACGCA 59.552 37.037 0.00 0.00 0.00 5.24
2151 4679 5.950758 AGGAGTAGAGATATTACACGCAG 57.049 43.478 0.00 0.00 0.00 5.18
2152 4680 4.216687 AGGAGTAGAGATATTACACGCAGC 59.783 45.833 0.00 0.00 0.00 5.25
2153 4681 4.023107 GGAGTAGAGATATTACACGCAGCA 60.023 45.833 0.00 0.00 0.00 4.41
2154 4682 5.507482 GGAGTAGAGATATTACACGCAGCAA 60.507 44.000 0.00 0.00 0.00 3.91
2155 4683 5.282510 AGTAGAGATATTACACGCAGCAAC 58.717 41.667 0.00 0.00 0.00 4.17
2156 4684 4.392921 AGAGATATTACACGCAGCAACT 57.607 40.909 0.00 0.00 0.00 3.16
2157 4685 5.515797 AGAGATATTACACGCAGCAACTA 57.484 39.130 0.00 0.00 0.00 2.24
2158 4686 6.090483 AGAGATATTACACGCAGCAACTAT 57.910 37.500 0.00 0.00 0.00 2.12
2159 4687 6.153067 AGAGATATTACACGCAGCAACTATC 58.847 40.000 0.00 0.00 0.00 2.08
2160 4688 5.842907 AGATATTACACGCAGCAACTATCA 58.157 37.500 0.00 0.00 0.00 2.15
2161 4689 6.459066 AGATATTACACGCAGCAACTATCAT 58.541 36.000 0.00 0.00 0.00 2.45
2162 4690 7.602753 AGATATTACACGCAGCAACTATCATA 58.397 34.615 0.00 0.00 0.00 2.15
2163 4691 8.088365 AGATATTACACGCAGCAACTATCATAA 58.912 33.333 0.00 0.00 0.00 1.90
2164 4692 6.918892 ATTACACGCAGCAACTATCATAAA 57.081 33.333 0.00 0.00 0.00 1.40
2165 4693 6.918892 TTACACGCAGCAACTATCATAAAT 57.081 33.333 0.00 0.00 0.00 1.40
2166 4694 5.818136 ACACGCAGCAACTATCATAAATT 57.182 34.783 0.00 0.00 0.00 1.82
2167 4695 6.918892 ACACGCAGCAACTATCATAAATTA 57.081 33.333 0.00 0.00 0.00 1.40
2168 4696 6.948353 ACACGCAGCAACTATCATAAATTAG 58.052 36.000 0.00 0.00 0.00 1.73
2169 4697 6.761242 ACACGCAGCAACTATCATAAATTAGA 59.239 34.615 0.00 0.00 0.00 2.10
2170 4698 7.065894 CACGCAGCAACTATCATAAATTAGAC 58.934 38.462 0.00 0.00 0.00 2.59
2171 4699 6.761242 ACGCAGCAACTATCATAAATTAGACA 59.239 34.615 0.00 0.00 0.00 3.41
2172 4700 7.442364 ACGCAGCAACTATCATAAATTAGACAT 59.558 33.333 0.00 0.00 0.00 3.06
2173 4701 7.743400 CGCAGCAACTATCATAAATTAGACATG 59.257 37.037 0.00 0.00 0.00 3.21
2174 4702 8.019669 GCAGCAACTATCATAAATTAGACATGG 58.980 37.037 0.00 0.00 0.00 3.66
2175 4703 9.060347 CAGCAACTATCATAAATTAGACATGGT 57.940 33.333 0.00 0.00 0.00 3.55
2206 4734 5.751243 TTAACCAAAACAGAGAGAGTTGC 57.249 39.130 0.00 0.00 0.00 4.17
2207 4735 2.576615 ACCAAAACAGAGAGAGTTGCC 58.423 47.619 0.00 0.00 0.00 4.52
2208 4736 2.092429 ACCAAAACAGAGAGAGTTGCCA 60.092 45.455 0.00 0.00 0.00 4.92
2209 4737 3.152341 CCAAAACAGAGAGAGTTGCCAT 58.848 45.455 0.00 0.00 0.00 4.40
2210 4738 4.202461 ACCAAAACAGAGAGAGTTGCCATA 60.202 41.667 0.00 0.00 0.00 2.74
2211 4739 4.154918 CCAAAACAGAGAGAGTTGCCATAC 59.845 45.833 0.00 0.00 0.00 2.39
2212 4740 4.899352 AAACAGAGAGAGTTGCCATACT 57.101 40.909 0.00 0.00 0.00 2.12
2213 4741 4.899352 AACAGAGAGAGTTGCCATACTT 57.101 40.909 0.00 0.00 0.00 2.24
2214 4742 4.899352 ACAGAGAGAGTTGCCATACTTT 57.101 40.909 0.00 0.00 0.00 2.66
2215 4743 5.234466 ACAGAGAGAGTTGCCATACTTTT 57.766 39.130 0.00 0.00 0.00 2.27
2216 4744 6.360370 ACAGAGAGAGTTGCCATACTTTTA 57.640 37.500 0.00 0.00 0.00 1.52
2217 4745 6.166982 ACAGAGAGAGTTGCCATACTTTTAC 58.833 40.000 0.00 0.00 0.00 2.01
2218 4746 6.166279 CAGAGAGAGTTGCCATACTTTTACA 58.834 40.000 0.00 0.00 0.00 2.41
2219 4747 6.312426 CAGAGAGAGTTGCCATACTTTTACAG 59.688 42.308 0.00 0.00 0.00 2.74
2220 4748 4.938226 AGAGAGTTGCCATACTTTTACAGC 59.062 41.667 0.00 0.00 0.00 4.40
2221 4749 4.911390 AGAGTTGCCATACTTTTACAGCT 58.089 39.130 0.00 0.00 0.00 4.24
2222 4750 6.049955 AGAGTTGCCATACTTTTACAGCTA 57.950 37.500 0.00 0.00 0.00 3.32
2223 4751 5.875359 AGAGTTGCCATACTTTTACAGCTAC 59.125 40.000 0.00 0.00 0.00 3.58
2224 4752 5.556915 AGTTGCCATACTTTTACAGCTACA 58.443 37.500 0.00 0.00 0.00 2.74
2225 4753 6.180472 AGTTGCCATACTTTTACAGCTACAT 58.820 36.000 0.00 0.00 0.00 2.29
2226 4754 6.659242 AGTTGCCATACTTTTACAGCTACATT 59.341 34.615 0.00 0.00 0.00 2.71
2227 4755 7.176690 AGTTGCCATACTTTTACAGCTACATTT 59.823 33.333 0.00 0.00 0.00 2.32
2228 4756 6.851609 TGCCATACTTTTACAGCTACATTTG 58.148 36.000 0.00 0.00 0.00 2.32
2229 4757 5.743872 GCCATACTTTTACAGCTACATTTGC 59.256 40.000 0.00 0.00 0.00 3.68
2230 4758 6.265577 CCATACTTTTACAGCTACATTTGCC 58.734 40.000 0.00 0.00 0.00 4.52
2231 4759 6.127758 CCATACTTTTACAGCTACATTTGCCA 60.128 38.462 0.00 0.00 0.00 4.92
2232 4760 5.982890 ACTTTTACAGCTACATTTGCCAT 57.017 34.783 0.00 0.00 0.00 4.40
2233 4761 5.954335 ACTTTTACAGCTACATTTGCCATC 58.046 37.500 0.00 0.00 0.00 3.51
2234 4762 5.711976 ACTTTTACAGCTACATTTGCCATCT 59.288 36.000 0.00 0.00 0.00 2.90
2235 4763 5.818136 TTTACAGCTACATTTGCCATCTC 57.182 39.130 0.00 0.00 0.00 2.75
2236 4764 2.283298 ACAGCTACATTTGCCATCTCG 58.717 47.619 0.00 0.00 0.00 4.04
2237 4765 1.600957 CAGCTACATTTGCCATCTCGG 59.399 52.381 0.00 0.00 38.11 4.63
2238 4766 1.486310 AGCTACATTTGCCATCTCGGA 59.514 47.619 0.00 0.00 36.56 4.55
2239 4767 2.105477 AGCTACATTTGCCATCTCGGAT 59.895 45.455 0.00 0.00 36.56 4.18
2240 4768 3.324846 AGCTACATTTGCCATCTCGGATA 59.675 43.478 0.00 0.00 36.56 2.59
2241 4769 4.065088 GCTACATTTGCCATCTCGGATAA 58.935 43.478 0.00 0.00 36.56 1.75
2242 4770 4.083802 GCTACATTTGCCATCTCGGATAAC 60.084 45.833 0.00 0.00 36.56 1.89
2243 4771 4.156455 ACATTTGCCATCTCGGATAACT 57.844 40.909 0.00 0.00 36.56 2.24
2244 4772 5.290493 ACATTTGCCATCTCGGATAACTA 57.710 39.130 0.00 0.00 36.56 2.24
2245 4773 5.057149 ACATTTGCCATCTCGGATAACTAC 58.943 41.667 0.00 0.00 36.56 2.73
2246 4774 4.746535 TTTGCCATCTCGGATAACTACA 57.253 40.909 0.00 0.00 36.56 2.74
2247 4775 4.955811 TTGCCATCTCGGATAACTACAT 57.044 40.909 0.00 0.00 36.56 2.29
2248 4776 4.521130 TGCCATCTCGGATAACTACATC 57.479 45.455 0.00 0.00 36.56 3.06
2249 4777 4.152647 TGCCATCTCGGATAACTACATCT 58.847 43.478 0.00 0.00 36.56 2.90
2250 4778 4.021981 TGCCATCTCGGATAACTACATCTG 60.022 45.833 0.00 0.00 36.56 2.90
2251 4779 4.021894 GCCATCTCGGATAACTACATCTGT 60.022 45.833 0.00 0.00 36.56 3.41
2252 4780 5.704888 CCATCTCGGATAACTACATCTGTC 58.295 45.833 0.00 0.00 36.56 3.51
2253 4781 5.241728 CCATCTCGGATAACTACATCTGTCA 59.758 44.000 0.00 0.00 36.56 3.58
2254 4782 6.071672 CCATCTCGGATAACTACATCTGTCAT 60.072 42.308 0.00 0.00 36.56 3.06
2255 4783 6.561737 TCTCGGATAACTACATCTGTCATC 57.438 41.667 0.00 0.00 33.70 2.92
2256 4784 5.473846 TCTCGGATAACTACATCTGTCATCC 59.526 44.000 0.00 0.00 33.70 3.51
2257 4785 5.137551 TCGGATAACTACATCTGTCATCCA 58.862 41.667 0.00 0.00 33.70 3.41
2258 4786 5.241728 TCGGATAACTACATCTGTCATCCAG 59.758 44.000 0.00 0.00 42.97 3.86
2259 4787 5.565637 CGGATAACTACATCTGTCATCCAGG 60.566 48.000 0.00 0.00 41.83 4.45
2260 4788 5.540337 GGATAACTACATCTGTCATCCAGGA 59.460 44.000 0.00 0.00 41.83 3.86
2261 4789 6.212388 GGATAACTACATCTGTCATCCAGGAT 59.788 42.308 0.00 0.00 41.83 3.24
2262 4790 4.952071 ACTACATCTGTCATCCAGGATG 57.048 45.455 22.28 22.28 41.83 3.51
2279 4807 5.990408 CAGGATGGCAACTAAATCGTTATC 58.010 41.667 0.00 0.00 37.61 1.75
2280 4808 5.049405 CAGGATGGCAACTAAATCGTTATCC 60.049 44.000 0.00 0.00 33.04 2.59
2281 4809 4.215613 GGATGGCAACTAAATCGTTATCCC 59.784 45.833 0.00 0.00 29.37 3.85
2282 4810 3.199677 TGGCAACTAAATCGTTATCCCG 58.800 45.455 0.00 0.00 37.61 5.14
2283 4811 2.032290 GGCAACTAAATCGTTATCCCGC 60.032 50.000 0.00 0.00 0.00 6.13
2284 4812 2.348218 GCAACTAAATCGTTATCCCGCG 60.348 50.000 0.00 0.00 0.00 6.46
2285 4813 2.144482 ACTAAATCGTTATCCCGCGG 57.856 50.000 21.04 21.04 0.00 6.46
2286 4814 1.269936 ACTAAATCGTTATCCCGCGGG 60.270 52.381 39.13 39.13 0.00 6.13
2287 4815 0.752054 TAAATCGTTATCCCGCGGGT 59.248 50.000 41.57 30.11 36.47 5.28
2288 4816 0.752054 AAATCGTTATCCCGCGGGTA 59.248 50.000 41.57 29.05 36.47 3.69
2289 4817 0.032540 AATCGTTATCCCGCGGGTAC 59.967 55.000 41.57 32.51 36.47 3.34
2310 4838 4.959446 ACGTAGTTGCGTCAGGAC 57.041 55.556 0.00 0.00 37.78 3.85
2320 4848 2.347490 GTCAGGACGTGTGGGCAT 59.653 61.111 0.00 0.00 0.00 4.40
2321 4849 1.594833 GTCAGGACGTGTGGGCATA 59.405 57.895 0.00 0.00 0.00 3.14
2322 4850 0.178068 GTCAGGACGTGTGGGCATAT 59.822 55.000 0.00 0.00 0.00 1.78
2323 4851 0.908910 TCAGGACGTGTGGGCATATT 59.091 50.000 0.00 0.00 0.00 1.28
2324 4852 1.280710 TCAGGACGTGTGGGCATATTT 59.719 47.619 0.00 0.00 0.00 1.40
2325 4853 1.401552 CAGGACGTGTGGGCATATTTG 59.598 52.381 0.00 0.00 0.00 2.32
2337 4865 2.594321 GCATATTTGCTTTGCGTCACA 58.406 42.857 0.35 0.00 45.77 3.58
2338 4866 2.342354 GCATATTTGCTTTGCGTCACAC 59.658 45.455 0.35 0.00 45.77 3.82
2339 4867 2.308347 TATTTGCTTTGCGTCACACG 57.692 45.000 0.00 0.00 45.88 4.49
2353 4881 3.159070 CACGCGTGTGTGAGGATG 58.841 61.111 30.50 0.79 42.55 3.51
2354 4882 1.372872 CACGCGTGTGTGAGGATGA 60.373 57.895 30.50 0.00 42.55 2.92
2355 4883 1.080501 ACGCGTGTGTGAGGATGAG 60.081 57.895 12.93 0.00 0.00 2.90
2356 4884 1.080501 CGCGTGTGTGAGGATGAGT 60.081 57.895 0.00 0.00 0.00 3.41
2357 4885 0.170339 CGCGTGTGTGAGGATGAGTA 59.830 55.000 0.00 0.00 0.00 2.59
2358 4886 1.795525 CGCGTGTGTGAGGATGAGTAG 60.796 57.143 0.00 0.00 0.00 2.57
2359 4887 1.202582 GCGTGTGTGAGGATGAGTAGT 59.797 52.381 0.00 0.00 0.00 2.73
2360 4888 2.422479 GCGTGTGTGAGGATGAGTAGTA 59.578 50.000 0.00 0.00 0.00 1.82
2361 4889 3.731264 GCGTGTGTGAGGATGAGTAGTAC 60.731 52.174 0.00 0.00 0.00 2.73
2362 4890 3.690139 CGTGTGTGAGGATGAGTAGTACT 59.310 47.826 1.37 1.37 0.00 2.73
2363 4891 4.156190 CGTGTGTGAGGATGAGTAGTACTT 59.844 45.833 0.00 0.00 0.00 2.24
2364 4892 5.403246 GTGTGTGAGGATGAGTAGTACTTG 58.597 45.833 0.00 0.00 0.00 3.16
2365 4893 5.047943 GTGTGTGAGGATGAGTAGTACTTGT 60.048 44.000 0.00 0.00 0.00 3.16
2366 4894 5.538813 TGTGTGAGGATGAGTAGTACTTGTT 59.461 40.000 0.00 0.00 0.00 2.83
2367 4895 5.864474 GTGTGAGGATGAGTAGTACTTGTTG 59.136 44.000 0.00 0.00 0.00 3.33
2368 4896 5.047306 TGTGAGGATGAGTAGTACTTGTTGG 60.047 44.000 0.00 0.00 0.00 3.77
2369 4897 4.466370 TGAGGATGAGTAGTACTTGTTGGG 59.534 45.833 0.00 0.00 0.00 4.12
2370 4898 3.197983 AGGATGAGTAGTACTTGTTGGGC 59.802 47.826 0.00 0.00 0.00 5.36
2371 4899 2.736144 TGAGTAGTACTTGTTGGGCG 57.264 50.000 0.00 0.00 0.00 6.13
2372 4900 1.337447 TGAGTAGTACTTGTTGGGCGC 60.337 52.381 0.00 0.00 0.00 6.53
2373 4901 0.682852 AGTAGTACTTGTTGGGCGCA 59.317 50.000 10.83 0.00 0.00 6.09
2374 4902 0.794473 GTAGTACTTGTTGGGCGCAC 59.206 55.000 10.83 6.04 0.00 5.34
2375 4903 0.393448 TAGTACTTGTTGGGCGCACA 59.607 50.000 9.15 9.15 0.00 4.57
2376 4904 0.464735 AGTACTTGTTGGGCGCACAA 60.465 50.000 23.74 23.74 33.09 3.33
2382 4910 3.847621 TTGGGCGCACAACATGAA 58.152 50.000 23.74 0.00 0.00 2.57
2383 4911 1.659233 TTGGGCGCACAACATGAAG 59.341 52.632 23.74 0.00 0.00 3.02
2384 4912 1.106351 TTGGGCGCACAACATGAAGT 61.106 50.000 23.74 0.00 0.00 3.01
2385 4913 0.250510 TGGGCGCACAACATGAAGTA 60.251 50.000 11.60 0.00 0.00 2.24
2386 4914 0.447801 GGGCGCACAACATGAAGTAG 59.552 55.000 10.83 0.00 0.00 2.57
2387 4915 0.179189 GGCGCACAACATGAAGTAGC 60.179 55.000 10.83 6.55 0.00 3.58
2388 4916 0.179189 GCGCACAACATGAAGTAGCC 60.179 55.000 0.30 0.00 0.00 3.93
2389 4917 1.155889 CGCACAACATGAAGTAGCCA 58.844 50.000 0.00 0.00 0.00 4.75
2390 4918 1.135972 CGCACAACATGAAGTAGCCAC 60.136 52.381 0.00 0.00 0.00 5.01
2391 4919 1.135972 GCACAACATGAAGTAGCCACG 60.136 52.381 0.00 0.00 0.00 4.94
2392 4920 1.135972 CACAACATGAAGTAGCCACGC 60.136 52.381 0.00 0.00 0.00 5.34
2393 4921 0.447801 CAACATGAAGTAGCCACGCC 59.552 55.000 0.00 0.00 0.00 5.68
2394 4922 0.676782 AACATGAAGTAGCCACGCCC 60.677 55.000 0.00 0.00 0.00 6.13
2395 4923 1.078497 CATGAAGTAGCCACGCCCA 60.078 57.895 0.00 0.00 0.00 5.36
2396 4924 1.078426 ATGAAGTAGCCACGCCCAC 60.078 57.895 0.00 0.00 0.00 4.61
2397 4925 1.836999 ATGAAGTAGCCACGCCCACA 61.837 55.000 0.00 0.00 0.00 4.17
2398 4926 2.032071 AAGTAGCCACGCCCACAC 59.968 61.111 0.00 0.00 0.00 3.82
2399 4927 2.725203 GAAGTAGCCACGCCCACACA 62.725 60.000 0.00 0.00 0.00 3.72
2400 4928 2.731691 AAGTAGCCACGCCCACACAG 62.732 60.000 0.00 0.00 0.00 3.66
2401 4929 2.920384 TAGCCACGCCCACACAGA 60.920 61.111 0.00 0.00 0.00 3.41
2402 4930 2.942796 TAGCCACGCCCACACAGAG 61.943 63.158 0.00 0.00 0.00 3.35
2405 4933 4.320456 CACGCCCACACAGAGCCT 62.320 66.667 0.00 0.00 0.00 4.58
2406 4934 4.320456 ACGCCCACACAGAGCCTG 62.320 66.667 1.16 1.16 37.52 4.85
2407 4935 4.320456 CGCCCACACAGAGCCTGT 62.320 66.667 2.38 2.38 46.51 4.00
2420 4948 3.957586 CCTGTGTGGGCTGCCTCA 61.958 66.667 19.68 14.99 0.00 3.86
2421 4949 2.353958 CTGTGTGGGCTGCCTCAT 59.646 61.111 19.68 0.00 0.00 2.90
2422 4950 2.034532 TGTGTGGGCTGCCTCATG 59.965 61.111 19.68 0.00 0.00 3.07
2423 4951 3.446570 GTGTGGGCTGCCTCATGC 61.447 66.667 19.68 1.35 41.77 4.06
2424 4952 3.654143 TGTGGGCTGCCTCATGCT 61.654 61.111 19.68 0.00 42.00 3.79
2425 4953 2.827642 GTGGGCTGCCTCATGCTC 60.828 66.667 19.68 0.00 42.00 4.26
2426 4954 3.332385 TGGGCTGCCTCATGCTCA 61.332 61.111 19.68 2.78 42.00 4.26
2427 4955 2.827642 GGGCTGCCTCATGCTCAC 60.828 66.667 19.68 0.00 42.00 3.51
2428 4956 2.045634 GGCTGCCTCATGCTCACA 60.046 61.111 12.43 0.00 42.00 3.58
2429 4957 2.404995 GGCTGCCTCATGCTCACAC 61.405 63.158 12.43 0.00 42.00 3.82
2430 4958 2.404995 GCTGCCTCATGCTCACACC 61.405 63.158 0.00 0.00 42.00 4.16
2431 4959 1.002990 CTGCCTCATGCTCACACCA 60.003 57.895 0.00 0.00 42.00 4.17
2432 4960 1.302752 TGCCTCATGCTCACACCAC 60.303 57.895 0.00 0.00 42.00 4.16
2433 4961 1.302752 GCCTCATGCTCACACCACA 60.303 57.895 0.00 0.00 36.87 4.17
2434 4962 0.890542 GCCTCATGCTCACACCACAA 60.891 55.000 0.00 0.00 36.87 3.33
2435 4963 1.830279 CCTCATGCTCACACCACAAT 58.170 50.000 0.00 0.00 0.00 2.71
2436 4964 1.471287 CCTCATGCTCACACCACAATG 59.529 52.381 0.00 0.00 0.00 2.82
2437 4965 2.156917 CTCATGCTCACACCACAATGT 58.843 47.619 0.00 0.00 0.00 2.71
2438 4966 2.153645 TCATGCTCACACCACAATGTC 58.846 47.619 0.00 0.00 0.00 3.06
2439 4967 2.156917 CATGCTCACACCACAATGTCT 58.843 47.619 0.00 0.00 0.00 3.41
2440 4968 3.007831 TCATGCTCACACCACAATGTCTA 59.992 43.478 0.00 0.00 0.00 2.59
2441 4969 3.044235 TGCTCACACCACAATGTCTAG 57.956 47.619 0.00 0.00 0.00 2.43
2442 4970 2.368548 TGCTCACACCACAATGTCTAGT 59.631 45.455 0.00 0.00 0.00 2.57
2443 4971 3.576550 TGCTCACACCACAATGTCTAGTA 59.423 43.478 0.00 0.00 0.00 1.82
2444 4972 4.222810 TGCTCACACCACAATGTCTAGTAT 59.777 41.667 0.00 0.00 0.00 2.12
2445 4973 4.568359 GCTCACACCACAATGTCTAGTATG 59.432 45.833 0.00 0.00 0.00 2.39
2446 4974 4.503910 TCACACCACAATGTCTAGTATGC 58.496 43.478 0.00 0.00 0.00 3.14
2447 4975 3.306973 CACACCACAATGTCTAGTATGCG 59.693 47.826 0.00 0.00 0.00 4.73
2448 4976 3.194755 ACACCACAATGTCTAGTATGCGA 59.805 43.478 0.00 0.00 0.00 5.10
2449 4977 3.551890 CACCACAATGTCTAGTATGCGAC 59.448 47.826 0.00 0.00 0.00 5.19
2450 4978 3.447586 ACCACAATGTCTAGTATGCGACT 59.552 43.478 0.00 0.00 42.69 4.18
2451 4979 4.045104 CCACAATGTCTAGTATGCGACTC 58.955 47.826 0.00 0.00 39.81 3.36
2464 4992 1.693083 GCGACTCATGTGGGCGTTAC 61.693 60.000 15.41 0.00 0.00 2.50
2465 4993 1.410737 CGACTCATGTGGGCGTTACG 61.411 60.000 0.00 0.00 0.00 3.18
2498 5026 6.687081 TTTTAGAGAGAGAGATCGAGGAAC 57.313 41.667 0.00 0.00 0.00 3.62
2499 5027 2.833794 AGAGAGAGAGATCGAGGAACG 58.166 52.381 0.00 0.00 44.09 3.95
2722 5257 1.444212 CGCGGTTTCTGGGCATTTG 60.444 57.895 0.00 0.00 0.00 2.32
2790 5326 2.584608 CTCCCCTCAATTCGCGGT 59.415 61.111 6.13 0.00 0.00 5.68
2813 5349 4.083600 GATGCGTTGCGTTGCGGA 62.084 61.111 0.00 0.00 0.00 5.54
2814 5350 3.381169 GATGCGTTGCGTTGCGGAT 62.381 57.895 2.13 2.13 41.57 4.18
2815 5351 3.665825 ATGCGTTGCGTTGCGGATG 62.666 57.895 0.00 0.00 37.74 3.51
2909 5447 3.127030 CACGCTCCACCTTTTATTTCCTC 59.873 47.826 0.00 0.00 0.00 3.71
3160 5714 3.835395 CTCGCTATTTATCCCTCCTTCCT 59.165 47.826 0.00 0.00 0.00 3.36
5362 8140 0.179137 TTGCATCTCGTAGCTGACCG 60.179 55.000 0.00 0.00 0.00 4.79
5457 8828 5.163311 TGACCTTGACACATATCCATACCAG 60.163 44.000 0.00 0.00 0.00 4.00
6075 10725 7.496346 TCAGAAACCTTCCATATGTACTCTT 57.504 36.000 1.24 0.00 0.00 2.85
6855 11520 9.878599 CTCTGCTAATAATTGTTTAATTACCCG 57.121 33.333 0.00 0.00 40.51 5.28
7451 12120 0.447801 GATGCACAAGGGTACGCTTG 59.552 55.000 37.20 37.20 40.64 4.01
7881 15944 5.184711 GCAATGGTTTTGATCTCTCTCTCT 58.815 41.667 0.00 0.00 0.00 3.10
8078 16148 9.740239 ATTATTTAGCAGCTTATTCATGTGTTG 57.260 29.630 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
861 1544 8.324306 TGTAATTTTGATCCAGATCTTGACTCT 58.676 33.333 8.99 0.00 38.60 3.24
1454 3970 1.471851 GCGTAAGGGAGAGAGGAAAGC 60.472 57.143 0.00 0.00 38.28 3.51
2008 4532 4.040445 CGCCATTAACCGGAAAAATCAT 57.960 40.909 9.46 0.00 0.00 2.45
2024 4548 4.457496 CTCACGCTGACCCGCCAT 62.457 66.667 0.00 0.00 0.00 4.40
2100 4626 1.202651 AGTTGGTGTCTTCGTTCCAGG 60.203 52.381 0.00 0.00 0.00 4.45
2109 4635 5.690865 TCCTAATGTTTCAGTTGGTGTCTT 58.309 37.500 0.00 0.00 0.00 3.01
2113 4639 6.464222 TCTACTCCTAATGTTTCAGTTGGTG 58.536 40.000 0.00 0.00 0.00 4.17
2123 4651 8.298140 GCGTGTAATATCTCTACTCCTAATGTT 58.702 37.037 0.00 0.00 0.00 2.71
2142 4670 6.918892 ATTTATGATAGTTGCTGCGTGTAA 57.081 33.333 0.00 0.00 0.00 2.41
2143 4671 6.918892 AATTTATGATAGTTGCTGCGTGTA 57.081 33.333 0.00 0.00 0.00 2.90
2144 4672 5.818136 AATTTATGATAGTTGCTGCGTGT 57.182 34.783 0.00 0.00 0.00 4.49
2145 4673 7.065894 GTCTAATTTATGATAGTTGCTGCGTG 58.934 38.462 0.00 0.00 0.00 5.34
2146 4674 6.761242 TGTCTAATTTATGATAGTTGCTGCGT 59.239 34.615 0.00 0.00 0.00 5.24
2147 4675 7.177498 TGTCTAATTTATGATAGTTGCTGCG 57.823 36.000 0.00 0.00 0.00 5.18
2148 4676 8.019669 CCATGTCTAATTTATGATAGTTGCTGC 58.980 37.037 0.00 0.00 0.00 5.25
2149 4677 9.060347 ACCATGTCTAATTTATGATAGTTGCTG 57.940 33.333 0.00 0.00 0.00 4.41
2180 4708 8.515414 GCAACTCTCTCTGTTTTGGTTAATTAT 58.485 33.333 0.00 0.00 0.00 1.28
2181 4709 7.040686 GGCAACTCTCTCTGTTTTGGTTAATTA 60.041 37.037 0.00 0.00 0.00 1.40
2182 4710 6.239036 GGCAACTCTCTCTGTTTTGGTTAATT 60.239 38.462 0.00 0.00 0.00 1.40
2183 4711 5.241728 GGCAACTCTCTCTGTTTTGGTTAAT 59.758 40.000 0.00 0.00 0.00 1.40
2184 4712 4.578928 GGCAACTCTCTCTGTTTTGGTTAA 59.421 41.667 0.00 0.00 0.00 2.01
2185 4713 4.134563 GGCAACTCTCTCTGTTTTGGTTA 58.865 43.478 0.00 0.00 0.00 2.85
2186 4714 2.952310 GGCAACTCTCTCTGTTTTGGTT 59.048 45.455 0.00 0.00 0.00 3.67
2187 4715 2.092429 TGGCAACTCTCTCTGTTTTGGT 60.092 45.455 0.00 0.00 37.61 3.67
2188 4716 2.575532 TGGCAACTCTCTCTGTTTTGG 58.424 47.619 0.00 0.00 37.61 3.28
2189 4717 4.999950 AGTATGGCAACTCTCTCTGTTTTG 59.000 41.667 0.00 0.00 37.61 2.44
2190 4718 5.234466 AGTATGGCAACTCTCTCTGTTTT 57.766 39.130 0.00 0.00 37.61 2.43
2191 4719 4.899352 AGTATGGCAACTCTCTCTGTTT 57.101 40.909 0.00 0.00 37.61 2.83
2192 4720 4.899352 AAGTATGGCAACTCTCTCTGTT 57.101 40.909 0.00 0.00 37.61 3.16
2193 4721 4.899352 AAAGTATGGCAACTCTCTCTGT 57.101 40.909 0.00 0.00 37.61 3.41
2194 4722 6.166279 TGTAAAAGTATGGCAACTCTCTCTG 58.834 40.000 0.00 0.00 37.61 3.35
2195 4723 6.360370 TGTAAAAGTATGGCAACTCTCTCT 57.640 37.500 0.00 0.00 37.61 3.10
2196 4724 5.064071 GCTGTAAAAGTATGGCAACTCTCTC 59.936 44.000 0.00 0.00 37.61 3.20
2197 4725 4.938226 GCTGTAAAAGTATGGCAACTCTCT 59.062 41.667 0.00 0.00 37.61 3.10
2198 4726 4.938226 AGCTGTAAAAGTATGGCAACTCTC 59.062 41.667 0.00 0.00 37.61 3.20
2199 4727 4.911390 AGCTGTAAAAGTATGGCAACTCT 58.089 39.130 0.00 0.00 37.61 3.24
2200 4728 5.642063 TGTAGCTGTAAAAGTATGGCAACTC 59.358 40.000 0.00 0.00 37.61 3.01
2201 4729 5.556915 TGTAGCTGTAAAAGTATGGCAACT 58.443 37.500 0.00 0.00 37.61 3.16
2202 4730 5.873179 TGTAGCTGTAAAAGTATGGCAAC 57.127 39.130 0.00 0.00 0.00 4.17
2203 4731 7.312154 CAAATGTAGCTGTAAAAGTATGGCAA 58.688 34.615 0.00 0.00 0.00 4.52
2204 4732 6.624861 GCAAATGTAGCTGTAAAAGTATGGCA 60.625 38.462 0.00 0.00 0.00 4.92
2205 4733 5.743872 GCAAATGTAGCTGTAAAAGTATGGC 59.256 40.000 0.00 0.00 0.00 4.40
2206 4734 6.127758 TGGCAAATGTAGCTGTAAAAGTATGG 60.128 38.462 0.00 0.00 0.00 2.74
2207 4735 6.851609 TGGCAAATGTAGCTGTAAAAGTATG 58.148 36.000 0.00 0.00 0.00 2.39
2208 4736 7.557719 AGATGGCAAATGTAGCTGTAAAAGTAT 59.442 33.333 0.00 0.00 0.00 2.12
2209 4737 6.884295 AGATGGCAAATGTAGCTGTAAAAGTA 59.116 34.615 0.00 0.00 0.00 2.24
2210 4738 5.711976 AGATGGCAAATGTAGCTGTAAAAGT 59.288 36.000 0.00 0.00 0.00 2.66
2211 4739 6.199937 AGATGGCAAATGTAGCTGTAAAAG 57.800 37.500 0.00 0.00 0.00 2.27
2212 4740 5.163764 CGAGATGGCAAATGTAGCTGTAAAA 60.164 40.000 0.00 0.00 0.00 1.52
2213 4741 4.332543 CGAGATGGCAAATGTAGCTGTAAA 59.667 41.667 0.00 0.00 0.00 2.01
2214 4742 3.871006 CGAGATGGCAAATGTAGCTGTAA 59.129 43.478 0.00 0.00 0.00 2.41
2215 4743 3.457234 CGAGATGGCAAATGTAGCTGTA 58.543 45.455 0.00 0.00 0.00 2.74
2216 4744 2.283298 CGAGATGGCAAATGTAGCTGT 58.717 47.619 0.00 0.00 0.00 4.40
2217 4745 1.600957 CCGAGATGGCAAATGTAGCTG 59.399 52.381 0.00 0.00 0.00 4.24
2218 4746 1.486310 TCCGAGATGGCAAATGTAGCT 59.514 47.619 0.00 0.00 37.80 3.32
2219 4747 1.953559 TCCGAGATGGCAAATGTAGC 58.046 50.000 0.00 0.00 37.80 3.58
2220 4748 5.300752 AGTTATCCGAGATGGCAAATGTAG 58.699 41.667 0.00 0.00 37.80 2.74
2221 4749 5.290493 AGTTATCCGAGATGGCAAATGTA 57.710 39.130 0.00 0.00 37.80 2.29
2222 4750 4.156455 AGTTATCCGAGATGGCAAATGT 57.844 40.909 0.00 0.00 37.80 2.71
2223 4751 5.056480 TGTAGTTATCCGAGATGGCAAATG 58.944 41.667 0.00 0.00 37.80 2.32
2224 4752 5.290493 TGTAGTTATCCGAGATGGCAAAT 57.710 39.130 0.00 0.00 37.80 2.32
2225 4753 4.746535 TGTAGTTATCCGAGATGGCAAA 57.253 40.909 0.00 0.00 37.80 3.68
2226 4754 4.588951 AGATGTAGTTATCCGAGATGGCAA 59.411 41.667 0.00 0.00 37.80 4.52
2227 4755 4.021981 CAGATGTAGTTATCCGAGATGGCA 60.022 45.833 0.00 0.00 37.80 4.92
2228 4756 4.021894 ACAGATGTAGTTATCCGAGATGGC 60.022 45.833 0.00 0.00 37.80 4.40
2229 4757 5.241728 TGACAGATGTAGTTATCCGAGATGG 59.758 44.000 0.00 0.00 40.09 3.51
2230 4758 6.319141 TGACAGATGTAGTTATCCGAGATG 57.681 41.667 0.00 0.00 0.00 2.90
2231 4759 6.151985 GGATGACAGATGTAGTTATCCGAGAT 59.848 42.308 0.00 0.00 40.74 2.75
2232 4760 5.473846 GGATGACAGATGTAGTTATCCGAGA 59.526 44.000 0.00 0.00 40.74 4.04
2233 4761 5.704888 GGATGACAGATGTAGTTATCCGAG 58.295 45.833 0.00 0.00 40.74 4.63
2234 4762 5.707242 GGATGACAGATGTAGTTATCCGA 57.293 43.478 0.00 0.00 40.74 4.55
2248 4776 1.064906 AGTTGCCATCCTGGATGACAG 60.065 52.381 33.02 19.62 42.09 3.51
2249 4777 0.994247 AGTTGCCATCCTGGATGACA 59.006 50.000 33.02 26.76 42.09 3.58
2250 4778 3.281727 TTAGTTGCCATCCTGGATGAC 57.718 47.619 33.02 24.54 42.09 3.06
2251 4779 4.464008 GATTTAGTTGCCATCCTGGATGA 58.536 43.478 33.02 15.16 42.09 2.92
2252 4780 3.251729 CGATTTAGTTGCCATCCTGGATG 59.748 47.826 26.43 26.43 40.96 3.51
2253 4781 3.117888 ACGATTTAGTTGCCATCCTGGAT 60.118 43.478 2.57 2.57 40.96 3.41
2254 4782 2.238646 ACGATTTAGTTGCCATCCTGGA 59.761 45.455 0.00 0.00 40.96 3.86
2255 4783 2.643551 ACGATTTAGTTGCCATCCTGG 58.356 47.619 0.00 0.00 41.55 4.45
2256 4784 5.049405 GGATAACGATTTAGTTGCCATCCTG 60.049 44.000 0.00 0.00 35.46 3.86
2257 4785 5.063880 GGATAACGATTTAGTTGCCATCCT 58.936 41.667 0.00 0.00 35.46 3.24
2258 4786 4.215613 GGGATAACGATTTAGTTGCCATCC 59.784 45.833 0.00 0.00 36.63 3.51
2259 4787 4.084013 CGGGATAACGATTTAGTTGCCATC 60.084 45.833 0.00 0.00 35.70 3.51
2260 4788 3.813166 CGGGATAACGATTTAGTTGCCAT 59.187 43.478 0.00 0.00 35.70 4.40
2261 4789 3.199677 CGGGATAACGATTTAGTTGCCA 58.800 45.455 0.00 0.00 35.70 4.92
2262 4790 2.032290 GCGGGATAACGATTTAGTTGCC 60.032 50.000 0.00 0.00 35.70 4.52
2263 4791 2.348218 CGCGGGATAACGATTTAGTTGC 60.348 50.000 0.00 0.00 35.70 4.17
2264 4792 2.220133 CCGCGGGATAACGATTTAGTTG 59.780 50.000 20.10 0.00 35.70 3.16
2265 4793 2.476821 CCGCGGGATAACGATTTAGTT 58.523 47.619 20.10 0.00 38.07 2.24
2266 4794 1.269936 CCCGCGGGATAACGATTTAGT 60.270 52.381 41.82 0.00 37.50 2.24
2267 4795 1.425412 CCCGCGGGATAACGATTTAG 58.575 55.000 41.82 6.56 37.50 1.85
2268 4796 3.591979 CCCGCGGGATAACGATTTA 57.408 52.632 41.82 0.00 37.50 1.40
2269 4797 4.449391 CCCGCGGGATAACGATTT 57.551 55.556 41.82 0.00 37.50 2.17
2279 4807 2.063541 CTACGTTAGGTACCCGCGGG 62.064 65.000 42.17 42.17 42.03 6.13
2280 4808 1.356624 CTACGTTAGGTACCCGCGG 59.643 63.158 21.04 21.04 0.00 6.46
2281 4809 0.451783 AACTACGTTAGGTACCCGCG 59.548 55.000 8.74 13.16 0.00 6.46
2282 4810 1.913317 CAACTACGTTAGGTACCCGC 58.087 55.000 8.74 0.00 0.00 6.13
2283 4811 1.795162 CGCAACTACGTTAGGTACCCG 60.795 57.143 8.74 7.96 0.00 5.28
2284 4812 1.202348 ACGCAACTACGTTAGGTACCC 59.798 52.381 8.74 0.00 45.75 3.69
2285 4813 2.636768 ACGCAACTACGTTAGGTACC 57.363 50.000 2.73 2.73 45.75 3.34
2303 4831 0.178068 ATATGCCCACACGTCCTGAC 59.822 55.000 0.00 0.00 0.00 3.51
2304 4832 0.908910 AATATGCCCACACGTCCTGA 59.091 50.000 0.00 0.00 0.00 3.86
2305 4833 1.401552 CAAATATGCCCACACGTCCTG 59.598 52.381 0.00 0.00 0.00 3.86
2306 4834 1.750193 CAAATATGCCCACACGTCCT 58.250 50.000 0.00 0.00 0.00 3.85
2317 4845 5.030748 CGTGTGACGCAAAGCAAATATGC 62.031 47.826 0.00 0.00 43.58 3.14
2318 4846 2.589407 CGTGTGACGCAAAGCAAATATG 59.411 45.455 0.00 0.00 33.65 1.78
2319 4847 2.850321 CGTGTGACGCAAAGCAAATAT 58.150 42.857 0.00 0.00 33.65 1.28
2320 4848 2.308347 CGTGTGACGCAAAGCAAATA 57.692 45.000 0.00 0.00 33.65 1.40
2321 4849 3.162499 CGTGTGACGCAAAGCAAAT 57.838 47.368 0.00 0.00 33.65 2.32
2322 4850 4.680349 CGTGTGACGCAAAGCAAA 57.320 50.000 0.00 0.00 33.65 3.68
2337 4865 1.080501 CTCATCCTCACACACGCGT 60.081 57.895 5.58 5.58 0.00 6.01
2338 4866 0.170339 TACTCATCCTCACACACGCG 59.830 55.000 3.53 3.53 0.00 6.01
2339 4867 1.202582 ACTACTCATCCTCACACACGC 59.797 52.381 0.00 0.00 0.00 5.34
2340 4868 3.690139 AGTACTACTCATCCTCACACACG 59.310 47.826 0.00 0.00 0.00 4.49
2341 4869 5.047943 ACAAGTACTACTCATCCTCACACAC 60.048 44.000 0.00 0.00 0.00 3.82
2342 4870 5.077564 ACAAGTACTACTCATCCTCACACA 58.922 41.667 0.00 0.00 0.00 3.72
2343 4871 5.646577 ACAAGTACTACTCATCCTCACAC 57.353 43.478 0.00 0.00 0.00 3.82
2344 4872 5.047306 CCAACAAGTACTACTCATCCTCACA 60.047 44.000 0.00 0.00 0.00 3.58
2345 4873 5.411781 CCAACAAGTACTACTCATCCTCAC 58.588 45.833 0.00 0.00 0.00 3.51
2346 4874 4.466370 CCCAACAAGTACTACTCATCCTCA 59.534 45.833 0.00 0.00 0.00 3.86
2347 4875 4.680975 GCCCAACAAGTACTACTCATCCTC 60.681 50.000 0.00 0.00 0.00 3.71
2348 4876 3.197983 GCCCAACAAGTACTACTCATCCT 59.802 47.826 0.00 0.00 0.00 3.24
2349 4877 3.532542 GCCCAACAAGTACTACTCATCC 58.467 50.000 0.00 0.00 0.00 3.51
2350 4878 3.187700 CGCCCAACAAGTACTACTCATC 58.812 50.000 0.00 0.00 0.00 2.92
2351 4879 2.677037 GCGCCCAACAAGTACTACTCAT 60.677 50.000 0.00 0.00 0.00 2.90
2352 4880 1.337447 GCGCCCAACAAGTACTACTCA 60.337 52.381 0.00 0.00 0.00 3.41
2353 4881 1.337447 TGCGCCCAACAAGTACTACTC 60.337 52.381 4.18 0.00 0.00 2.59
2354 4882 0.682852 TGCGCCCAACAAGTACTACT 59.317 50.000 4.18 0.00 0.00 2.57
2355 4883 0.794473 GTGCGCCCAACAAGTACTAC 59.206 55.000 4.18 0.00 0.00 2.73
2356 4884 0.393448 TGTGCGCCCAACAAGTACTA 59.607 50.000 4.18 0.00 0.00 1.82
2357 4885 0.464735 TTGTGCGCCCAACAAGTACT 60.465 50.000 4.18 0.00 0.00 2.73
2358 4886 0.317519 GTTGTGCGCCCAACAAGTAC 60.318 55.000 27.45 7.30 43.32 2.73
2359 4887 2.026522 GTTGTGCGCCCAACAAGTA 58.973 52.632 27.45 0.00 43.32 2.24
2360 4888 2.804856 GTTGTGCGCCCAACAAGT 59.195 55.556 27.45 0.00 43.32 3.16
2364 4892 0.664166 CTTCATGTTGTGCGCCCAAC 60.664 55.000 26.05 26.05 43.95 3.77
2365 4893 1.106351 ACTTCATGTTGTGCGCCCAA 61.106 50.000 4.18 1.76 0.00 4.12
2366 4894 0.250510 TACTTCATGTTGTGCGCCCA 60.251 50.000 4.18 0.00 0.00 5.36
2367 4895 0.447801 CTACTTCATGTTGTGCGCCC 59.552 55.000 4.18 0.00 0.00 6.13
2368 4896 0.179189 GCTACTTCATGTTGTGCGCC 60.179 55.000 4.18 0.00 0.00 6.53
2369 4897 0.179189 GGCTACTTCATGTTGTGCGC 60.179 55.000 0.00 0.00 0.00 6.09
2370 4898 1.135972 GTGGCTACTTCATGTTGTGCG 60.136 52.381 0.00 0.00 0.00 5.34
2371 4899 1.135972 CGTGGCTACTTCATGTTGTGC 60.136 52.381 0.00 0.74 0.00 4.57
2372 4900 1.135972 GCGTGGCTACTTCATGTTGTG 60.136 52.381 0.00 0.00 0.00 3.33
2373 4901 1.156736 GCGTGGCTACTTCATGTTGT 58.843 50.000 0.00 0.00 0.00 3.32
2374 4902 0.447801 GGCGTGGCTACTTCATGTTG 59.552 55.000 0.00 0.00 0.00 3.33
2375 4903 0.676782 GGGCGTGGCTACTTCATGTT 60.677 55.000 0.00 0.00 0.00 2.71
2376 4904 1.078426 GGGCGTGGCTACTTCATGT 60.078 57.895 0.00 0.00 0.00 3.21
2377 4905 1.078497 TGGGCGTGGCTACTTCATG 60.078 57.895 0.00 0.00 0.00 3.07
2378 4906 1.078426 GTGGGCGTGGCTACTTCAT 60.078 57.895 0.00 0.00 0.00 2.57
2379 4907 2.345991 GTGGGCGTGGCTACTTCA 59.654 61.111 0.00 0.00 0.00 3.02
2380 4908 2.033194 GTGTGGGCGTGGCTACTTC 61.033 63.158 11.01 1.67 0.00 3.01
2381 4909 2.032071 GTGTGGGCGTGGCTACTT 59.968 61.111 11.01 0.00 0.00 2.24
2382 4910 3.238497 TGTGTGGGCGTGGCTACT 61.238 61.111 11.01 0.00 0.00 2.57
2383 4911 2.742372 CTGTGTGGGCGTGGCTAC 60.742 66.667 2.89 2.89 0.00 3.58
2384 4912 2.920384 TCTGTGTGGGCGTGGCTA 60.920 61.111 0.00 0.00 0.00 3.93
2385 4913 4.320456 CTCTGTGTGGGCGTGGCT 62.320 66.667 0.00 0.00 0.00 4.75
2388 4916 4.320456 AGGCTCTGTGTGGGCGTG 62.320 66.667 0.00 0.00 0.00 5.34
2389 4917 4.320456 CAGGCTCTGTGTGGGCGT 62.320 66.667 0.00 0.00 0.00 5.68
2390 4918 4.320456 ACAGGCTCTGTGTGGGCG 62.320 66.667 7.00 0.00 43.63 6.13
2403 4931 3.278072 ATGAGGCAGCCCACACAGG 62.278 63.158 8.22 0.00 34.44 4.00
2404 4932 2.044555 CATGAGGCAGCCCACACAG 61.045 63.158 8.22 2.22 34.44 3.66
2405 4933 2.034532 CATGAGGCAGCCCACACA 59.965 61.111 8.22 4.17 34.44 3.72
2406 4934 3.446570 GCATGAGGCAGCCCACAC 61.447 66.667 8.22 0.00 43.97 3.82
2415 4943 0.890542 TTGTGGTGTGAGCATGAGGC 60.891 55.000 0.00 0.00 45.30 4.70
2416 4944 1.471287 CATTGTGGTGTGAGCATGAGG 59.529 52.381 0.00 0.00 0.00 3.86
2417 4945 2.156917 ACATTGTGGTGTGAGCATGAG 58.843 47.619 0.00 0.00 0.00 2.90
2418 4946 2.153645 GACATTGTGGTGTGAGCATGA 58.846 47.619 0.00 0.00 31.16 3.07
2419 4947 2.156917 AGACATTGTGGTGTGAGCATG 58.843 47.619 0.00 0.00 31.16 4.06
2420 4948 2.574006 AGACATTGTGGTGTGAGCAT 57.426 45.000 0.00 0.00 31.16 3.79
2421 4949 2.368548 ACTAGACATTGTGGTGTGAGCA 59.631 45.455 0.00 0.00 31.16 4.26
2422 4950 3.045601 ACTAGACATTGTGGTGTGAGC 57.954 47.619 0.00 0.00 31.16 4.26
2423 4951 4.568359 GCATACTAGACATTGTGGTGTGAG 59.432 45.833 0.00 0.00 31.16 3.51
2424 4952 4.503910 GCATACTAGACATTGTGGTGTGA 58.496 43.478 0.00 0.00 31.16 3.58
2425 4953 3.306973 CGCATACTAGACATTGTGGTGTG 59.693 47.826 0.00 0.91 31.16 3.82
2426 4954 3.194755 TCGCATACTAGACATTGTGGTGT 59.805 43.478 0.00 0.00 34.39 4.16
2427 4955 3.551890 GTCGCATACTAGACATTGTGGTG 59.448 47.826 0.00 0.00 37.34 4.17
2428 4956 3.447586 AGTCGCATACTAGACATTGTGGT 59.552 43.478 0.00 0.00 39.67 4.16
2429 4957 4.045104 GAGTCGCATACTAGACATTGTGG 58.955 47.826 0.00 0.00 39.07 4.17
2430 4958 4.672409 TGAGTCGCATACTAGACATTGTG 58.328 43.478 0.00 0.00 39.07 3.33
2431 4959 4.983671 TGAGTCGCATACTAGACATTGT 57.016 40.909 0.00 0.00 39.07 2.71
2432 4960 5.174579 CACATGAGTCGCATACTAGACATTG 59.825 44.000 0.00 0.00 39.07 2.82
2433 4961 5.284864 CACATGAGTCGCATACTAGACATT 58.715 41.667 0.00 0.00 39.07 2.71
2434 4962 4.261783 CCACATGAGTCGCATACTAGACAT 60.262 45.833 0.00 0.00 39.07 3.06
2435 4963 3.066760 CCACATGAGTCGCATACTAGACA 59.933 47.826 0.00 0.00 39.07 3.41
2436 4964 3.551046 CCCACATGAGTCGCATACTAGAC 60.551 52.174 0.00 0.00 39.07 2.59
2437 4965 2.623416 CCCACATGAGTCGCATACTAGA 59.377 50.000 0.00 0.00 39.07 2.43
2438 4966 2.864097 GCCCACATGAGTCGCATACTAG 60.864 54.545 0.00 0.00 39.07 2.57
2439 4967 1.068588 GCCCACATGAGTCGCATACTA 59.931 52.381 0.00 0.00 39.07 1.82
2440 4968 0.179073 GCCCACATGAGTCGCATACT 60.179 55.000 0.00 0.00 42.80 2.12
2441 4969 1.490693 CGCCCACATGAGTCGCATAC 61.491 60.000 0.00 0.00 34.82 2.39
2442 4970 1.227234 CGCCCACATGAGTCGCATA 60.227 57.895 0.00 0.00 34.82 3.14
2443 4971 2.512286 CGCCCACATGAGTCGCAT 60.512 61.111 0.00 0.00 37.85 4.73
2444 4972 2.161078 TAACGCCCACATGAGTCGCA 62.161 55.000 0.00 0.00 0.00 5.10
2445 4973 1.447140 TAACGCCCACATGAGTCGC 60.447 57.895 0.00 0.00 0.00 5.19
2446 4974 1.410737 CGTAACGCCCACATGAGTCG 61.411 60.000 0.00 0.00 0.00 4.18
2447 4975 0.108992 TCGTAACGCCCACATGAGTC 60.109 55.000 0.00 0.00 0.00 3.36
2448 4976 0.108804 CTCGTAACGCCCACATGAGT 60.109 55.000 0.00 0.00 0.00 3.41
2449 4977 0.806102 CCTCGTAACGCCCACATGAG 60.806 60.000 0.00 0.00 0.00 2.90
2450 4978 1.216977 CCTCGTAACGCCCACATGA 59.783 57.895 0.00 0.00 0.00 3.07
2451 4979 1.082117 GTCCTCGTAACGCCCACATG 61.082 60.000 0.00 0.00 0.00 3.21
2479 5007 2.169769 ACGTTCCTCGATCTCTCTCTCT 59.830 50.000 0.00 0.00 42.86 3.10
2510 5042 6.310197 GGAGACGATGATCACTTTTCTTTTG 58.690 40.000 0.00 0.00 0.00 2.44
2669 5201 2.264794 GTGAGGAACGGCGATGGT 59.735 61.111 16.62 0.00 0.00 3.55
2672 5204 4.814294 GCGGTGAGGAACGGCGAT 62.814 66.667 16.62 0.00 44.06 4.58
2722 5257 5.049680 TGAAAGAAGCTCGTACCACAAAATC 60.050 40.000 0.00 0.00 0.00 2.17
2790 5326 2.603247 AACGCAACGCATCGCTCAA 61.603 52.632 0.00 0.00 0.00 3.02
2813 5349 0.096976 CGAGAAATTGCGAACGCCAT 59.903 50.000 16.27 8.28 41.09 4.40
2814 5350 1.495509 CGAGAAATTGCGAACGCCA 59.504 52.632 16.27 6.07 41.09 5.69
2815 5351 1.863446 GCGAGAAATTGCGAACGCC 60.863 57.895 16.27 0.79 41.09 5.68
2816 5352 0.521242 ATGCGAGAAATTGCGAACGC 60.521 50.000 12.33 12.33 44.95 4.84
2817 5353 1.882198 AATGCGAGAAATTGCGAACG 58.118 45.000 0.00 0.00 0.00 3.95
2818 5354 5.086058 TCTAAAATGCGAGAAATTGCGAAC 58.914 37.500 0.00 0.00 0.00 3.95
2819 5355 5.289917 TCTAAAATGCGAGAAATTGCGAA 57.710 34.783 0.00 0.00 0.00 4.70
2820 5356 4.937696 TCTAAAATGCGAGAAATTGCGA 57.062 36.364 0.00 0.00 0.00 5.10
2821 5357 4.672413 GGATCTAAAATGCGAGAAATTGCG 59.328 41.667 0.00 0.00 0.00 4.85
2822 5358 5.456822 GTGGATCTAAAATGCGAGAAATTGC 59.543 40.000 0.00 0.00 0.00 3.56
2909 5447 5.820423 TCATCCAATTCCAACACCGTAATAG 59.180 40.000 0.00 0.00 0.00 1.73
3160 5714 4.333372 TGAAGCTGTATACATCGTACGTGA 59.667 41.667 16.05 0.00 0.00 4.35
4793 7535 3.056313 GCAAATCAGGCCAGGCGTC 62.056 63.158 5.01 0.00 0.00 5.19
5362 8140 1.114627 GGGGGATGTTCTCAAATGCC 58.885 55.000 0.00 0.00 33.75 4.40
5457 8828 4.337985 CAAGACATGCTGACAAGACATC 57.662 45.455 0.00 0.00 0.00 3.06
6075 10725 4.520179 CTGGATGACATTCTGGATCACAA 58.480 43.478 0.00 0.00 0.00 3.33
6412 11077 2.094894 GCCAGATGTCAGATGTTCAACG 59.905 50.000 0.00 0.00 0.00 4.10
7625 15634 4.287067 ACACAATCACAGGATGGTCTTACT 59.713 41.667 0.00 0.00 43.62 2.24
7777 15835 7.203218 GCAAAAGATTAGACTTGAAAACTGGT 58.797 34.615 0.00 0.00 0.00 4.00
7881 15944 0.517755 AAACAAACACACACACGCGA 59.482 45.000 15.93 0.00 0.00 5.87
8078 16148 0.107654 ACGGGCCATCTGTTAAGAGC 60.108 55.000 4.39 0.00 35.37 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.