Multiple sequence alignment - TraesCS3D01G069500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G069500 chr3D 100.000 7302 0 0 1 7302 30423017 30430318 0.000000e+00 13485.0
1 TraesCS3D01G069500 chr3D 92.577 2425 107 40 4917 7302 30676464 30674074 0.000000e+00 3413.0
2 TraesCS3D01G069500 chr3D 92.029 1932 109 21 966 2892 30679383 30677492 0.000000e+00 2673.0
3 TraesCS3D01G069500 chr3D 81.833 2389 289 74 4917 7231 30412388 30410071 0.000000e+00 1873.0
4 TraesCS3D01G069500 chr3D 98.585 848 12 0 3460 4307 2769337 2770184 0.000000e+00 1500.0
5 TraesCS3D01G069500 chr3D 95.113 573 18 7 2891 3461 30677396 30676832 0.000000e+00 894.0
6 TraesCS3D01G069500 chr3D 82.347 1048 147 23 980 2010 30415162 30414136 0.000000e+00 876.0
7 TraesCS3D01G069500 chr3D 84.687 862 104 12 1138 1991 30418496 30417655 0.000000e+00 835.0
8 TraesCS3D01G069500 chr3D 75.391 1471 277 68 4984 6401 31435210 31436648 3.720000e-177 632.0
9 TraesCS3D01G069500 chr3D 92.947 397 16 7 4308 4704 30676840 30676456 1.060000e-157 568.0
10 TraesCS3D01G069500 chr3D 88.664 247 27 1 2061 2307 30414106 30413861 4.280000e-77 300.0
11 TraesCS3D01G069500 chr3D 87.179 234 24 4 3230 3461 30413219 30412990 2.020000e-65 261.0
12 TraesCS3D01G069500 chr3D 94.118 68 4 0 328 395 710366 710299 3.600000e-18 104.0
13 TraesCS3D01G069500 chr3A 94.477 3042 88 20 4308 7302 42380685 42383693 0.000000e+00 4614.0
14 TraesCS3D01G069500 chr3A 92.995 1756 76 14 1145 2892 42378317 42380033 0.000000e+00 2518.0
15 TraesCS3D01G069500 chr3A 82.195 2387 301 65 4917 7231 42367912 42365578 0.000000e+00 1940.0
16 TraesCS3D01G069500 chr3A 82.255 2395 280 68 4917 7231 42798147 42795818 0.000000e+00 1934.0
17 TraesCS3D01G069500 chr3A 80.991 1373 183 39 954 2307 42801014 42799701 0.000000e+00 1018.0
18 TraesCS3D01G069500 chr3A 96.167 574 15 4 2891 3461 42380124 42380693 0.000000e+00 931.0
19 TraesCS3D01G069500 chr3A 82.443 1048 146 24 980 2010 43293360 43292334 0.000000e+00 881.0
20 TraesCS3D01G069500 chr3A 84.845 871 115 11 1152 2010 43876568 43875703 0.000000e+00 861.0
21 TraesCS3D01G069500 chr3A 83.382 692 62 17 531 1192 42377599 42378267 6.310000e-165 592.0
22 TraesCS3D01G069500 chr3A 84.325 504 58 10 4917 5412 43290658 43290168 2.380000e-129 473.0
23 TraesCS3D01G069500 chr3A 83.556 450 61 9 2383 2830 42370053 42369615 6.820000e-110 409.0
24 TraesCS3D01G069500 chr3A 89.474 247 25 1 2061 2307 43292304 43292059 1.980000e-80 311.0
25 TraesCS3D01G069500 chr3A 89.474 247 25 1 2061 2307 43875673 43875428 1.980000e-80 311.0
26 TraesCS3D01G069500 chr3A 88.034 234 22 4 3230 3461 43291426 43291197 9.330000e-69 272.0
27 TraesCS3D01G069500 chr3A 87.607 234 23 4 3230 3461 43874795 43874566 4.340000e-67 267.0
28 TraesCS3D01G069500 chr3A 90.826 109 8 2 3355 3461 42798870 42798762 2.120000e-30 145.0
29 TraesCS3D01G069500 chr3A 75.517 290 36 24 541 805 42371666 42371387 7.750000e-20 110.0
30 TraesCS3D01G069500 chr3B 91.718 1932 114 22 966 2892 53359145 53357255 0.000000e+00 2639.0
31 TraesCS3D01G069500 chr3B 94.319 1549 55 6 4917 6435 53356229 53354684 0.000000e+00 2342.0
32 TraesCS3D01G069500 chr3B 80.091 2411 300 80 4917 7231 53219066 53216740 0.000000e+00 1628.0
33 TraesCS3D01G069500 chr3B 90.788 825 50 15 3464 4273 824481337 824482150 0.000000e+00 1079.0
34 TraesCS3D01G069500 chr3B 91.729 665 48 4 6638 7302 53351179 53350522 0.000000e+00 917.0
35 TraesCS3D01G069500 chr3B 94.764 573 18 8 2891 3461 53357159 53356597 0.000000e+00 881.0
36 TraesCS3D01G069500 chr3B 74.332 1609 313 69 4920 6461 53575947 53574372 6.310000e-165 592.0
37 TraesCS3D01G069500 chr3B 91.414 396 20 9 4310 4704 53356603 53356221 1.390000e-146 531.0
38 TraesCS3D01G069500 chr3B 84.327 453 52 13 2384 2829 53220609 53220169 6.770000e-115 425.0
39 TraesCS3D01G069500 chr3B 88.839 224 25 0 2076 2299 53220872 53220649 7.220000e-70 276.0
40 TraesCS3D01G069500 chr3B 91.329 173 10 3 6436 6605 53351350 53351180 1.580000e-56 231.0
41 TraesCS3D01G069500 chr3B 91.667 72 6 0 4855 4926 446747983 446747912 4.660000e-17 100.0
42 TraesCS3D01G069500 chr5D 95.535 851 7 2 3461 4311 527691614 527692433 0.000000e+00 1332.0
43 TraesCS3D01G069500 chrUn 84.543 1378 162 25 4934 6278 406952164 406950805 0.000000e+00 1317.0
44 TraesCS3D01G069500 chrUn 84.543 1378 162 25 4934 6278 406953632 406952273 0.000000e+00 1317.0
45 TraesCS3D01G069500 chrUn 82.398 1051 148 23 977 2010 332581876 332582906 0.000000e+00 881.0
46 TraesCS3D01G069500 chrUn 88.411 604 66 4 5678 6278 472518170 472518772 0.000000e+00 725.0
47 TraesCS3D01G069500 chrUn 79.408 879 144 21 3455 4315 2056534 2057393 2.940000e-163 586.0
48 TraesCS3D01G069500 chrUn 91.626 406 23 3 2192 2593 478850748 478851146 1.070000e-152 551.0
49 TraesCS3D01G069500 chrUn 88.110 328 39 0 3980 4307 79241038 79240711 2.470000e-104 390.0
50 TraesCS3D01G069500 chrUn 89.474 247 25 1 2061 2307 332582936 332583181 1.980000e-80 311.0
51 TraesCS3D01G069500 chrUn 87.963 216 21 3 3230 3444 332583814 332584025 4.370000e-62 250.0
52 TraesCS3D01G069500 chr2A 94.923 847 31 4 3461 4307 742558649 742559483 0.000000e+00 1315.0
53 TraesCS3D01G069500 chr1B 94.582 849 40 2 3460 4307 24736794 24737637 0.000000e+00 1308.0
54 TraesCS3D01G069500 chr1B 89.474 76 8 0 328 403 677532688 677532763 6.030000e-16 97.1
55 TraesCS3D01G069500 chr6B 93.567 855 33 5 3460 4307 178268835 178269674 0.000000e+00 1254.0
56 TraesCS3D01G069500 chr7B 93.640 849 34 5 3461 4309 691034818 691035646 0.000000e+00 1251.0
57 TraesCS3D01G069500 chr7B 94.015 802 45 2 3510 4310 716400253 716401052 0.000000e+00 1212.0
58 TraesCS3D01G069500 chr7B 92.603 703 37 1 3605 4307 733151108 733151795 0.000000e+00 996.0
59 TraesCS3D01G069500 chr7B 86.824 425 30 12 2 403 18204375 18203954 1.120000e-122 451.0
60 TraesCS3D01G069500 chr7B 80.734 109 21 0 4705 4813 517623158 517623266 1.310000e-12 86.1
61 TraesCS3D01G069500 chr2D 95.332 407 14 4 1 404 131387933 131388337 6.180000e-180 641.0
62 TraesCS3D01G069500 chr2D 84.038 426 44 13 1 404 476699771 476699348 8.880000e-104 388.0
63 TraesCS3D01G069500 chr2D 76.965 369 52 14 19 372 520642300 520642650 5.820000e-41 180.0
64 TraesCS3D01G069500 chr1A 89.196 398 35 6 1 393 95834366 95833972 2.370000e-134 490.0
65 TraesCS3D01G069500 chr1A 97.101 69 0 2 4854 4921 517098412 517098345 1.660000e-21 115.0
66 TraesCS3D01G069500 chr1A 98.387 62 1 0 4854 4915 427302673 427302612 7.750000e-20 110.0
67 TraesCS3D01G069500 chr1A 95.522 67 2 1 4856 4922 568702334 568702269 1.000000e-18 106.0
68 TraesCS3D01G069500 chr4B 87.711 415 27 10 2 393 189983258 189982845 5.160000e-126 462.0
69 TraesCS3D01G069500 chr4B 78.333 420 62 15 3461 3856 25698775 25698361 2.030000e-60 244.0
70 TraesCS3D01G069500 chr4B 78.378 407 64 20 1 392 568738038 568737641 7.320000e-60 243.0
71 TraesCS3D01G069500 chr5B 86.396 419 33 10 2 398 262431754 262432170 3.130000e-118 436.0
72 TraesCS3D01G069500 chr5B 85.122 410 29 21 7 397 439450709 439450313 2.470000e-104 390.0
73 TraesCS3D01G069500 chr5B 85.542 83 12 0 4705 4787 407814377 407814295 3.630000e-13 87.9
74 TraesCS3D01G069500 chr2B 81.733 427 53 14 1 404 557825950 557825526 4.220000e-87 333.0
75 TraesCS3D01G069500 chr2B 98.361 61 1 0 4855 4915 71316766 71316826 2.790000e-19 108.0
76 TraesCS3D01G069500 chr2B 89.286 84 4 5 4858 4940 16263037 16263116 4.660000e-17 100.0
77 TraesCS3D01G069500 chr7D 83.333 138 21 1 4705 4842 635866130 635865995 7.690000e-25 126.0
78 TraesCS3D01G069500 chr6D 83.099 142 21 3 4702 4842 467976689 467976828 7.690000e-25 126.0
79 TraesCS3D01G069500 chr1D 98.361 61 1 0 4854 4914 330094222 330094162 2.790000e-19 108.0
80 TraesCS3D01G069500 chr4D 95.455 66 3 0 4855 4920 112721881 112721816 1.000000e-18 106.0
81 TraesCS3D01G069500 chr4A 97.297 37 1 0 2856 2892 670946583 670946619 6.120000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G069500 chr3D 30423017 30430318 7301 False 13485.000000 13485 100.000000 1 7302 1 chr3D.!!$F2 7301
1 TraesCS3D01G069500 chr3D 30674074 30679383 5309 True 1887.000000 3413 93.166500 966 7302 4 chr3D.!!$R3 6336
2 TraesCS3D01G069500 chr3D 2769337 2770184 847 False 1500.000000 1500 98.585000 3460 4307 1 chr3D.!!$F1 847
3 TraesCS3D01G069500 chr3D 30410071 30418496 8425 True 829.000000 1873 84.942000 980 7231 5 chr3D.!!$R2 6251
4 TraesCS3D01G069500 chr3D 31435210 31436648 1438 False 632.000000 632 75.391000 4984 6401 1 chr3D.!!$F3 1417
5 TraesCS3D01G069500 chr3A 42377599 42383693 6094 False 2163.750000 4614 91.755250 531 7302 4 chr3A.!!$F1 6771
6 TraesCS3D01G069500 chr3A 42795818 42801014 5196 True 1032.333333 1934 84.690667 954 7231 3 chr3A.!!$R2 6277
7 TraesCS3D01G069500 chr3A 42365578 42371666 6088 True 819.666667 1940 80.422667 541 7231 3 chr3A.!!$R1 6690
8 TraesCS3D01G069500 chr3A 43290168 43293360 3192 True 484.250000 881 86.069000 980 5412 4 chr3A.!!$R3 4432
9 TraesCS3D01G069500 chr3A 43874566 43876568 2002 True 479.666667 861 87.308667 1152 3461 3 chr3A.!!$R4 2309
10 TraesCS3D01G069500 chr3B 53350522 53359145 8623 True 1256.833333 2639 92.545500 966 7302 6 chr3B.!!$R4 6336
11 TraesCS3D01G069500 chr3B 824481337 824482150 813 False 1079.000000 1079 90.788000 3464 4273 1 chr3B.!!$F1 809
12 TraesCS3D01G069500 chr3B 53216740 53220872 4132 True 776.333333 1628 84.419000 2076 7231 3 chr3B.!!$R3 5155
13 TraesCS3D01G069500 chr3B 53574372 53575947 1575 True 592.000000 592 74.332000 4920 6461 1 chr3B.!!$R1 1541
14 TraesCS3D01G069500 chr5D 527691614 527692433 819 False 1332.000000 1332 95.535000 3461 4311 1 chr5D.!!$F1 850
15 TraesCS3D01G069500 chrUn 406950805 406953632 2827 True 1317.000000 1317 84.543000 4934 6278 2 chrUn.!!$R2 1344
16 TraesCS3D01G069500 chrUn 472518170 472518772 602 False 725.000000 725 88.411000 5678 6278 1 chrUn.!!$F2 600
17 TraesCS3D01G069500 chrUn 2056534 2057393 859 False 586.000000 586 79.408000 3455 4315 1 chrUn.!!$F1 860
18 TraesCS3D01G069500 chrUn 332581876 332584025 2149 False 480.666667 881 86.611667 977 3444 3 chrUn.!!$F4 2467
19 TraesCS3D01G069500 chr2A 742558649 742559483 834 False 1315.000000 1315 94.923000 3461 4307 1 chr2A.!!$F1 846
20 TraesCS3D01G069500 chr1B 24736794 24737637 843 False 1308.000000 1308 94.582000 3460 4307 1 chr1B.!!$F1 847
21 TraesCS3D01G069500 chr6B 178268835 178269674 839 False 1254.000000 1254 93.567000 3460 4307 1 chr6B.!!$F1 847
22 TraesCS3D01G069500 chr7B 691034818 691035646 828 False 1251.000000 1251 93.640000 3461 4309 1 chr7B.!!$F2 848
23 TraesCS3D01G069500 chr7B 716400253 716401052 799 False 1212.000000 1212 94.015000 3510 4310 1 chr7B.!!$F3 800
24 TraesCS3D01G069500 chr7B 733151108 733151795 687 False 996.000000 996 92.603000 3605 4307 1 chr7B.!!$F4 702

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 0.032815 TCGAGTTGCAACCATGACGA 59.967 50.000 25.62 22.42 0.00 4.20 F
502 503 0.041488 CGAGACGGATACTGCGTACC 60.041 60.000 0.00 0.00 46.52 3.34 F
713 737 0.108615 CCGTTCCTCATCGCTGTCTT 60.109 55.000 0.00 0.00 0.00 3.01 F
1083 3444 0.179018 AAGGTGAGCCACTGGTTGTC 60.179 55.000 0.00 0.00 37.19 3.18 F
1637 4122 1.281867 CCATTCTGCTAACCTGGGTGA 59.718 52.381 0.00 0.00 0.00 4.02 F
3199 5828 0.399454 AGCTTGTGCCAGTCATGAGT 59.601 50.000 0.00 0.00 40.80 3.41 F
4733 8325 0.457851 AAGCCTCAATCGACCGAGAG 59.542 55.000 13.22 6.42 0.00 3.20 F
4858 8450 5.184864 TGTCACTTTTTCTGAACCAACATGT 59.815 36.000 0.00 0.00 0.00 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1892 4377 2.413765 CTCGCGGTAAGCTCCTCC 59.586 66.667 6.13 0.00 45.59 4.30 R
2150 4640 2.539081 GGGCCCTCCAACTCCAGTT 61.539 63.158 17.04 0.00 39.12 3.16 R
2360 4856 5.424895 AGATCAAGCAGGAGAGAGTAAACAT 59.575 40.000 0.00 0.00 0.00 2.71 R
2774 5296 1.966762 CAAATCAGGCCAGGCGTTT 59.033 52.632 5.01 0.41 0.00 3.60 R
3452 6688 0.544357 TGTCCACCCTGACCTACCAG 60.544 60.000 0.00 0.00 34.25 4.00 R
4897 8489 0.904865 TGGGTGTGGCTAGGTCTCAG 60.905 60.000 0.00 0.00 0.00 3.35 R
6055 11181 1.072266 AGTATCCCACTTGTGGCCAA 58.928 50.000 7.24 0.00 31.59 4.52 R
6771 15293 1.339929 GAGGCAAAATGGTTCAACCGT 59.660 47.619 1.02 0.00 42.58 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.202348 GTGCAAGTTCACAATAGGGGC 59.798 52.381 0.00 0.00 36.97 5.80
21 22 0.451783 GCAAGTTCACAATAGGGGCG 59.548 55.000 0.00 0.00 0.00 6.13
22 23 1.948611 GCAAGTTCACAATAGGGGCGA 60.949 52.381 0.00 0.00 0.00 5.54
23 24 2.009774 CAAGTTCACAATAGGGGCGAG 58.990 52.381 0.00 0.00 0.00 5.03
24 25 0.107654 AGTTCACAATAGGGGCGAGC 60.108 55.000 0.00 0.00 0.00 5.03
26 27 2.587322 TTCACAATAGGGGCGAGCCG 62.587 60.000 8.14 0.00 36.85 5.52
27 28 3.861797 ACAATAGGGGCGAGCCGG 61.862 66.667 8.14 0.00 36.85 6.13
28 29 3.546543 CAATAGGGGCGAGCCGGA 61.547 66.667 5.05 0.00 36.85 5.14
29 30 3.234730 AATAGGGGCGAGCCGGAG 61.235 66.667 5.05 0.00 36.85 4.63
30 31 3.751049 AATAGGGGCGAGCCGGAGA 62.751 63.158 5.05 0.00 36.85 3.71
52 53 4.467084 GACGCGGGGATGCTCCAA 62.467 66.667 12.47 0.00 38.64 3.53
53 54 4.778143 ACGCGGGGATGCTCCAAC 62.778 66.667 12.47 0.00 38.64 3.77
55 56 4.424711 GCGGGGATGCTCCAACCA 62.425 66.667 4.85 0.00 38.64 3.67
56 57 2.597340 CGGGGATGCTCCAACCAT 59.403 61.111 4.85 0.00 38.64 3.55
57 58 1.825191 CGGGGATGCTCCAACCATG 60.825 63.158 4.85 0.00 38.64 3.66
58 59 1.614711 GGGGATGCTCCAACCATGA 59.385 57.895 0.00 0.00 38.64 3.07
59 60 0.033208 GGGGATGCTCCAACCATGAA 60.033 55.000 0.00 0.00 38.64 2.57
60 61 1.412074 GGGGATGCTCCAACCATGAAT 60.412 52.381 0.00 0.00 38.64 2.57
63 64 4.172458 GGATGCTCCAACCATGAATGGC 62.172 54.545 9.31 3.01 43.41 4.40
70 71 4.918129 CCATGAATGGCAGCGCGC 62.918 66.667 26.66 26.66 41.75 6.86
85 86 2.046892 CGCTGGAACCCTCCTGTG 60.047 66.667 0.79 0.00 42.94 3.66
86 87 2.883828 CGCTGGAACCCTCCTGTGT 61.884 63.158 4.06 0.00 42.98 3.72
87 88 1.456287 GCTGGAACCCTCCTGTGTT 59.544 57.895 0.79 0.00 42.94 3.32
89 90 0.320771 CTGGAACCCTCCTGTGTTCG 60.321 60.000 0.00 0.00 42.94 3.95
90 91 0.761323 TGGAACCCTCCTGTGTTCGA 60.761 55.000 0.00 0.00 42.94 3.71
91 92 0.037232 GGAACCCTCCTGTGTTCGAG 60.037 60.000 0.00 0.00 41.36 4.04
94 95 0.393077 ACCCTCCTGTGTTCGAGTTG 59.607 55.000 0.00 0.00 0.00 3.16
95 96 0.951040 CCCTCCTGTGTTCGAGTTGC 60.951 60.000 0.00 0.00 0.00 4.17
96 97 0.249868 CCTCCTGTGTTCGAGTTGCA 60.250 55.000 0.00 0.00 0.00 4.08
97 98 1.581934 CTCCTGTGTTCGAGTTGCAA 58.418 50.000 0.00 0.00 0.00 4.08
98 99 1.261619 CTCCTGTGTTCGAGTTGCAAC 59.738 52.381 22.17 22.17 0.00 4.17
99 100 0.307760 CCTGTGTTCGAGTTGCAACC 59.692 55.000 25.62 15.73 0.00 3.77
100 101 1.013596 CTGTGTTCGAGTTGCAACCA 58.986 50.000 25.62 13.26 0.00 3.67
102 103 1.333308 TGTGTTCGAGTTGCAACCATG 59.667 47.619 25.62 15.45 0.00 3.66
103 104 1.601903 GTGTTCGAGTTGCAACCATGA 59.398 47.619 25.62 17.45 0.00 3.07
104 105 1.601903 TGTTCGAGTTGCAACCATGAC 59.398 47.619 25.62 18.57 0.00 3.06
106 107 0.032815 TCGAGTTGCAACCATGACGA 59.967 50.000 25.62 22.42 0.00 4.20
107 108 0.439985 CGAGTTGCAACCATGACGAG 59.560 55.000 25.62 5.08 0.00 4.18
108 109 0.166814 GAGTTGCAACCATGACGAGC 59.833 55.000 25.62 0.00 0.00 5.03
124 125 3.066814 GCAGGGAGCCAAGGCAAG 61.067 66.667 14.40 0.00 44.88 4.01
125 126 2.437897 CAGGGAGCCAAGGCAAGT 59.562 61.111 14.40 0.00 44.88 3.16
126 127 1.975407 CAGGGAGCCAAGGCAAGTG 60.975 63.158 14.40 1.33 44.88 3.16
148 149 2.522060 GACACGACTGTCAGGCAAG 58.478 57.895 6.49 0.00 45.57 4.01
149 150 1.560860 GACACGACTGTCAGGCAAGC 61.561 60.000 6.49 0.00 45.57 4.01
150 151 2.356313 ACGACTGTCAGGCAAGCG 60.356 61.111 6.49 3.49 0.00 4.68
151 152 3.114616 CGACTGTCAGGCAAGCGG 61.115 66.667 6.49 0.00 0.00 5.52
152 153 3.426568 GACTGTCAGGCAAGCGGC 61.427 66.667 0.00 0.00 43.74 6.53
196 197 4.389576 GTCGCGGTGGCAAGCAAG 62.390 66.667 6.13 1.86 39.92 4.01
198 199 3.434319 CGCGGTGGCAAGCAAGAT 61.434 61.111 15.04 0.00 39.92 2.40
199 200 2.486966 GCGGTGGCAAGCAAGATC 59.513 61.111 10.78 0.00 39.62 2.75
200 201 2.787249 CGGTGGCAAGCAAGATCG 59.213 61.111 0.00 0.00 0.00 3.69
201 202 2.486966 GGTGGCAAGCAAGATCGC 59.513 61.111 0.00 0.00 0.00 4.58
202 203 2.334946 GGTGGCAAGCAAGATCGCA 61.335 57.895 0.00 0.00 0.00 5.10
203 204 1.136147 GTGGCAAGCAAGATCGCAG 59.864 57.895 0.00 0.00 0.00 5.18
204 205 2.042259 TGGCAAGCAAGATCGCAGG 61.042 57.895 0.00 0.00 0.00 4.85
205 206 2.101770 GCAAGCAAGATCGCAGGC 59.898 61.111 0.00 0.00 0.00 4.85
206 207 2.402388 CAAGCAAGATCGCAGGCG 59.598 61.111 7.46 7.46 41.35 5.52
207 208 2.821366 AAGCAAGATCGCAGGCGG 60.821 61.111 14.24 0.00 40.25 6.13
225 226 2.892425 CCGGCGAGCCAACTGATC 60.892 66.667 9.30 0.00 35.37 2.92
226 227 2.892425 CGGCGAGCCAACTGATCC 60.892 66.667 15.03 0.00 35.37 3.36
227 228 2.892425 GGCGAGCCAACTGATCCG 60.892 66.667 9.58 0.00 35.81 4.18
228 229 2.892425 GCGAGCCAACTGATCCGG 60.892 66.667 0.00 0.00 0.00 5.14
229 230 2.892425 CGAGCCAACTGATCCGGC 60.892 66.667 0.00 4.79 46.62 6.13
232 233 3.113745 GCCAACTGATCCGGCATG 58.886 61.111 0.00 0.00 45.52 4.06
233 234 3.113745 CCAACTGATCCGGCATGC 58.886 61.111 9.90 9.90 0.00 4.06
235 236 3.204827 AACTGATCCGGCATGCGC 61.205 61.111 12.44 0.00 37.44 6.09
250 251 4.012895 CGCGCACGCTGTCCTTTT 62.013 61.111 13.70 0.00 39.32 2.27
269 270 3.859411 TTTTTCTTGTTTCCTGTGCGT 57.141 38.095 0.00 0.00 0.00 5.24
270 271 2.842208 TTTCTTGTTTCCTGTGCGTG 57.158 45.000 0.00 0.00 0.00 5.34
272 273 1.745232 TCTTGTTTCCTGTGCGTGTT 58.255 45.000 0.00 0.00 0.00 3.32
275 276 3.057174 TCTTGTTTCCTGTGCGTGTTTTT 60.057 39.130 0.00 0.00 0.00 1.94
301 302 8.873215 TTCTGTGTGTTTGACTTTTAAAACAA 57.127 26.923 0.00 0.00 45.17 2.83
302 303 8.873215 TCTGTGTGTTTGACTTTTAAAACAAA 57.127 26.923 10.89 10.89 45.17 2.83
303 304 8.973378 TCTGTGTGTTTGACTTTTAAAACAAAG 58.027 29.630 13.89 6.60 45.17 2.77
304 305 7.568433 TGTGTGTTTGACTTTTAAAACAAAGC 58.432 30.769 13.89 11.31 45.17 3.51
305 306 7.224753 TGTGTGTTTGACTTTTAAAACAAAGCA 59.775 29.630 13.89 12.97 45.17 3.91
306 307 8.064814 GTGTGTTTGACTTTTAAAACAAAGCAA 58.935 29.630 13.89 5.15 45.17 3.91
307 308 8.778358 TGTGTTTGACTTTTAAAACAAAGCAAT 58.222 25.926 13.89 0.00 45.17 3.56
308 309 9.605955 GTGTTTGACTTTTAAAACAAAGCAATT 57.394 25.926 13.89 0.00 45.17 2.32
313 314 9.015577 TGACTTTTAAAACAAAGCAATTAGACG 57.984 29.630 0.00 0.00 37.28 4.18
314 315 8.347729 ACTTTTAAAACAAAGCAATTAGACGG 57.652 30.769 0.00 0.00 37.28 4.79
316 317 8.705048 TTTTAAAACAAAGCAATTAGACGGTT 57.295 26.923 0.00 0.00 0.00 4.44
317 318 7.687005 TTAAAACAAAGCAATTAGACGGTTG 57.313 32.000 0.00 0.00 0.00 3.77
318 319 3.915437 ACAAAGCAATTAGACGGTTGG 57.085 42.857 0.00 0.00 0.00 3.77
320 321 2.817258 CAAAGCAATTAGACGGTTGGGA 59.183 45.455 0.00 0.00 0.00 4.37
322 323 2.433436 AGCAATTAGACGGTTGGGAAC 58.567 47.619 0.00 0.00 0.00 3.62
323 324 1.129811 GCAATTAGACGGTTGGGAACG 59.870 52.381 0.00 0.00 0.00 3.95
324 325 1.735571 CAATTAGACGGTTGGGAACGG 59.264 52.381 0.00 0.00 37.68 4.44
326 327 1.269012 TTAGACGGTTGGGAACGGAT 58.731 50.000 0.00 0.00 35.85 4.18
328 329 1.004200 GACGGTTGGGAACGGATGT 60.004 57.895 0.00 0.00 35.85 3.06
329 330 0.247185 GACGGTTGGGAACGGATGTA 59.753 55.000 0.00 0.00 35.85 2.29
331 332 1.134610 ACGGTTGGGAACGGATGTATC 60.135 52.381 0.00 0.00 35.85 2.24
332 333 1.578583 GGTTGGGAACGGATGTATCG 58.421 55.000 0.00 0.00 0.00 2.92
333 334 1.578583 GTTGGGAACGGATGTATCGG 58.421 55.000 0.00 0.00 0.00 4.18
334 335 0.466543 TTGGGAACGGATGTATCGGG 59.533 55.000 4.74 0.00 0.00 5.14
335 336 1.301479 GGGAACGGATGTATCGGGC 60.301 63.158 4.74 0.00 0.00 6.13
336 337 1.663702 GGAACGGATGTATCGGGCG 60.664 63.158 4.74 0.00 0.00 6.13
337 338 1.663702 GAACGGATGTATCGGGCGG 60.664 63.158 4.74 0.00 0.00 6.13
339 340 3.991051 CGGATGTATCGGGCGGCT 61.991 66.667 9.56 0.00 0.00 5.52
340 341 2.357517 GGATGTATCGGGCGGCTG 60.358 66.667 12.43 12.43 0.00 4.85
342 343 3.883744 GATGTATCGGGCGGCTGGG 62.884 68.421 18.83 3.34 0.00 4.45
359 360 4.966787 GGCTTGACCGGCCCAACA 62.967 66.667 0.00 0.00 43.49 3.33
360 361 2.909965 GCTTGACCGGCCCAACAA 60.910 61.111 0.00 0.00 0.00 2.83
363 364 0.243636 CTTGACCGGCCCAACAATTC 59.756 55.000 0.00 0.00 0.00 2.17
364 365 0.468214 TTGACCGGCCCAACAATTCA 60.468 50.000 0.00 0.00 0.00 2.57
365 366 0.893270 TGACCGGCCCAACAATTCAG 60.893 55.000 0.00 0.00 0.00 3.02
366 367 2.212900 GACCGGCCCAACAATTCAGC 62.213 60.000 0.00 0.00 0.00 4.26
367 368 2.573340 CGGCCCAACAATTCAGCC 59.427 61.111 0.00 0.00 40.33 4.85
369 370 2.573340 GCCCAACAATTCAGCCGG 59.427 61.111 0.00 0.00 0.00 6.13
371 372 1.586028 CCCAACAATTCAGCCGGTG 59.414 57.895 1.90 0.00 0.00 4.94
372 373 1.080569 CCAACAATTCAGCCGGTGC 60.081 57.895 1.90 0.00 37.95 5.01
373 374 1.442520 CAACAATTCAGCCGGTGCG 60.443 57.895 1.90 0.00 44.33 5.34
374 375 3.267597 AACAATTCAGCCGGTGCGC 62.268 57.895 1.90 0.00 44.33 6.09
375 376 4.481112 CAATTCAGCCGGTGCGCC 62.481 66.667 6.11 6.11 44.33 6.53
400 401 3.676093 GCCTATAAGCGCCCTTTTATCT 58.324 45.455 2.29 0.00 32.47 1.98
401 402 4.072839 GCCTATAAGCGCCCTTTTATCTT 58.927 43.478 2.29 0.00 32.47 2.40
403 404 5.009710 GCCTATAAGCGCCCTTTTATCTTTT 59.990 40.000 2.29 0.00 32.47 2.27
404 405 6.669278 CCTATAAGCGCCCTTTTATCTTTTC 58.331 40.000 2.29 0.00 32.47 2.29
405 406 3.868757 AAGCGCCCTTTTATCTTTTCC 57.131 42.857 2.29 0.00 0.00 3.13
406 407 1.743394 AGCGCCCTTTTATCTTTTCCG 59.257 47.619 2.29 0.00 0.00 4.30
408 409 1.743394 CGCCCTTTTATCTTTTCCGCT 59.257 47.619 0.00 0.00 0.00 5.52
409 410 2.223272 CGCCCTTTTATCTTTTCCGCTC 60.223 50.000 0.00 0.00 0.00 5.03
410 411 2.752903 GCCCTTTTATCTTTTCCGCTCA 59.247 45.455 0.00 0.00 0.00 4.26
411 412 3.192633 GCCCTTTTATCTTTTCCGCTCAA 59.807 43.478 0.00 0.00 0.00 3.02
412 413 4.142160 GCCCTTTTATCTTTTCCGCTCAAT 60.142 41.667 0.00 0.00 0.00 2.57
413 414 5.067283 GCCCTTTTATCTTTTCCGCTCAATA 59.933 40.000 0.00 0.00 0.00 1.90
416 417 9.014297 CCCTTTTATCTTTTCCGCTCAATATAT 57.986 33.333 0.00 0.00 0.00 0.86
417 418 9.831737 CCTTTTATCTTTTCCGCTCAATATATG 57.168 33.333 0.00 0.00 0.00 1.78
420 421 9.554395 TTTATCTTTTCCGCTCAATATATGACA 57.446 29.630 0.00 0.00 33.47 3.58
421 422 9.725019 TTATCTTTTCCGCTCAATATATGACAT 57.275 29.630 0.00 0.00 33.47 3.06
422 423 8.627208 ATCTTTTCCGCTCAATATATGACATT 57.373 30.769 0.00 0.00 33.47 2.71
423 424 8.450578 TCTTTTCCGCTCAATATATGACATTT 57.549 30.769 0.00 0.00 33.47 2.32
424 425 9.554395 TCTTTTCCGCTCAATATATGACATTTA 57.446 29.630 0.00 0.00 33.47 1.40
447 448 9.675464 TTTAAAATACTGACGAATATTCCACCT 57.325 29.630 9.87 0.00 0.00 4.00
448 449 9.675464 TTAAAATACTGACGAATATTCCACCTT 57.325 29.630 9.87 0.00 0.00 3.50
449 450 7.787725 AAATACTGACGAATATTCCACCTTC 57.212 36.000 9.87 0.42 0.00 3.46
450 451 3.782046 ACTGACGAATATTCCACCTTCG 58.218 45.455 9.87 0.44 45.35 3.79
458 459 7.278211 CGAATATTCCACCTTCGTATATGTG 57.722 40.000 9.87 0.00 37.56 3.21
461 462 4.395959 TTCCACCTTCGTATATGTGTCC 57.604 45.455 0.00 0.00 0.00 4.02
462 463 2.359848 TCCACCTTCGTATATGTGTCCG 59.640 50.000 0.00 0.00 0.00 4.79
463 464 2.124903 CACCTTCGTATATGTGTCCGC 58.875 52.381 0.00 0.00 0.00 5.54
464 465 1.752498 ACCTTCGTATATGTGTCCGCA 59.248 47.619 0.00 0.00 0.00 5.69
466 467 2.987149 CCTTCGTATATGTGTCCGCATC 59.013 50.000 0.00 0.00 0.00 3.91
467 468 2.717580 TCGTATATGTGTCCGCATCC 57.282 50.000 0.00 0.00 0.00 3.51
468 469 1.068816 TCGTATATGTGTCCGCATCCG 60.069 52.381 0.00 0.00 0.00 4.18
501 502 3.434452 CGAGACGGATACTGCGTAC 57.566 57.895 0.00 0.00 46.52 3.67
502 503 0.041488 CGAGACGGATACTGCGTACC 60.041 60.000 0.00 0.00 46.52 3.34
503 504 1.019673 GAGACGGATACTGCGTACCA 58.980 55.000 0.00 0.00 46.52 3.25
504 505 1.607628 GAGACGGATACTGCGTACCAT 59.392 52.381 0.00 0.00 46.52 3.55
506 507 2.034305 AGACGGATACTGCGTACCATTC 59.966 50.000 0.00 0.00 46.52 2.67
507 508 1.268896 ACGGATACTGCGTACCATTCG 60.269 52.381 0.00 0.00 44.20 3.34
508 509 1.268896 CGGATACTGCGTACCATTCGT 60.269 52.381 0.00 0.00 0.00 3.85
509 510 2.124903 GGATACTGCGTACCATTCGTG 58.875 52.381 0.00 0.00 0.00 4.35
510 511 2.124903 GATACTGCGTACCATTCGTGG 58.875 52.381 0.00 0.00 0.00 4.94
511 512 0.458889 TACTGCGTACCATTCGTGGC 60.459 55.000 0.00 0.00 0.00 5.01
513 514 1.966493 CTGCGTACCATTCGTGGCAC 61.966 60.000 7.79 7.79 33.36 5.01
514 515 2.746803 GCGTACCATTCGTGGCACC 61.747 63.158 12.86 0.00 0.00 5.01
515 516 2.449525 CGTACCATTCGTGGCACCG 61.450 63.158 12.86 7.59 0.00 4.94
516 517 2.435234 TACCATTCGTGGCACCGC 60.435 61.111 12.86 0.00 0.00 5.68
517 518 2.949909 TACCATTCGTGGCACCGCT 61.950 57.895 12.86 0.00 0.00 5.52
518 519 2.457743 TACCATTCGTGGCACCGCTT 62.458 55.000 12.86 0.00 0.00 4.68
521 522 0.519519 CATTCGTGGCACCGCTTTTA 59.480 50.000 12.86 0.00 0.00 1.52
522 523 1.132262 CATTCGTGGCACCGCTTTTAT 59.868 47.619 12.86 0.00 0.00 1.40
523 524 0.800012 TTCGTGGCACCGCTTTTATC 59.200 50.000 12.86 0.00 0.00 1.75
524 525 0.320858 TCGTGGCACCGCTTTTATCA 60.321 50.000 12.86 0.00 0.00 2.15
525 526 0.519519 CGTGGCACCGCTTTTATCAA 59.480 50.000 12.86 0.00 0.00 2.57
526 527 1.727857 CGTGGCACCGCTTTTATCAAC 60.728 52.381 12.86 0.00 0.00 3.18
527 528 1.268352 GTGGCACCGCTTTTATCAACA 59.732 47.619 6.29 0.00 0.00 3.33
528 529 2.094752 GTGGCACCGCTTTTATCAACAT 60.095 45.455 6.29 0.00 0.00 2.71
530 531 2.440501 GCACCGCTTTTATCAACATCG 58.559 47.619 0.00 0.00 0.00 3.84
532 533 3.416277 CACCGCTTTTATCAACATCGTG 58.584 45.455 0.00 0.00 0.00 4.35
547 548 4.651778 ACATCGTGGAGGAAAGAAAATGA 58.348 39.130 0.00 0.00 0.00 2.57
580 581 1.301165 CGTCCCGTCCCGTTTTTCT 60.301 57.895 0.00 0.00 0.00 2.52
603 604 0.467290 CCTCCTCTTCCTCTCCCGAG 60.467 65.000 0.00 0.00 37.01 4.63
637 644 2.742372 CGCTTCAACCCGACCCAG 60.742 66.667 0.00 0.00 0.00 4.45
713 737 0.108615 CCGTTCCTCATCGCTGTCTT 60.109 55.000 0.00 0.00 0.00 3.01
734 758 4.830765 CCGGCCGCGATTTCTGGA 62.831 66.667 22.85 0.00 0.00 3.86
741 765 1.737236 CCGCGATTTCTGGACATTTGA 59.263 47.619 8.23 0.00 0.00 2.69
744 768 4.414852 CGCGATTTCTGGACATTTGATTT 58.585 39.130 0.00 0.00 0.00 2.17
776 802 3.073356 ACCTTCTTTCACCCGGTGATTAA 59.927 43.478 21.10 12.20 42.40 1.40
788 814 2.723273 GGTGATTAACTGAACCCCCTG 58.277 52.381 0.00 0.00 0.00 4.45
808 835 1.826385 CCTCCCATCTTTTTCGCTGT 58.174 50.000 0.00 0.00 0.00 4.40
809 836 1.740025 CCTCCCATCTTTTTCGCTGTC 59.260 52.381 0.00 0.00 0.00 3.51
833 865 0.179200 GATTGCGTCGCGGTGAAATT 60.179 50.000 13.38 0.00 0.00 1.82
853 887 8.991026 TGAAATTATTTGCCTTCACAAATTCTG 58.009 29.630 7.70 0.00 45.63 3.02
908 942 8.641499 TTTATTTTCTTTATTATTGCGCTGGG 57.359 30.769 9.73 0.00 0.00 4.45
935 969 7.491048 TGATTTTAACCAAAACTCTGCTTTGAC 59.509 33.333 0.00 0.00 36.49 3.18
936 970 5.906113 TTAACCAAAACTCTGCTTTGACA 57.094 34.783 0.00 0.00 36.12 3.58
964 1018 5.156355 CCGATTTCTTTTGGTGATTCACTG 58.844 41.667 16.02 3.19 34.40 3.66
1017 3373 2.055100 GATATGAAGCGAGAAGGCGTC 58.945 52.381 0.00 0.00 41.04 5.19
1083 3444 0.179018 AAGGTGAGCCACTGGTTGTC 60.179 55.000 0.00 0.00 37.19 3.18
1113 3474 5.907207 TCGCTACTTATTCATTCTTCTGCT 58.093 37.500 0.00 0.00 0.00 4.24
1124 3485 4.562789 TCATTCTTCTGCTCGTACGATTTG 59.437 41.667 19.87 8.59 0.00 2.32
1126 3487 3.242518 TCTTCTGCTCGTACGATTTGTG 58.757 45.455 19.87 7.79 0.00 3.33
1127 3488 2.717580 TCTGCTCGTACGATTTGTGT 57.282 45.000 19.87 0.00 0.00 3.72
1130 3491 3.437741 TCTGCTCGTACGATTTGTGTAGA 59.562 43.478 19.87 16.92 0.00 2.59
1158 3525 8.177663 CCATTTCAGAACTGTGTTGTATGATAC 58.822 37.037 0.00 0.00 0.00 2.24
1195 3655 5.340439 AACTAGGTAATTCACTTCCGGAG 57.660 43.478 3.34 1.34 0.00 4.63
1284 3744 2.434428 AGAAGTCGCCTCGAACTTAGA 58.566 47.619 0.33 0.00 37.72 2.10
1300 3760 6.350277 CGAACTTAGAGGGAACTGTTGTATCT 60.350 42.308 0.00 0.73 44.43 1.98
1324 3784 1.324736 GCTTCATTCGATGACGGTGAC 59.675 52.381 0.00 0.00 39.39 3.67
1328 3788 3.964909 TCATTCGATGACGGTGACTATG 58.035 45.455 0.00 0.00 40.21 2.23
1340 3800 5.109903 ACGGTGACTATGAACATTAGCTTC 58.890 41.667 0.00 0.00 0.00 3.86
1429 3889 7.865385 TGTGCAGGAAATAATACACTGTTTTTC 59.135 33.333 0.00 0.00 0.00 2.29
1462 3922 3.000925 GCATAACTACCGTGAACAATCCG 59.999 47.826 0.00 0.00 0.00 4.18
1565 4037 5.091261 TGGTACTGCCAATTTGTTTTTGT 57.909 34.783 0.00 0.00 45.94 2.83
1567 4039 5.940470 TGGTACTGCCAATTTGTTTTTGTTT 59.060 32.000 0.00 0.00 45.94 2.83
1568 4040 7.103641 TGGTACTGCCAATTTGTTTTTGTTTA 58.896 30.769 0.00 0.00 45.94 2.01
1570 4042 8.616942 GGTACTGCCAATTTGTTTTTGTTTATT 58.383 29.630 0.00 0.00 37.17 1.40
1571 4043 9.995957 GTACTGCCAATTTGTTTTTGTTTATTT 57.004 25.926 0.00 0.00 0.00 1.40
1581 4053 9.907576 TTTGTTTTTGTTTATTTAACATCAGCG 57.092 25.926 0.00 0.00 45.72 5.18
1582 4054 8.066668 TGTTTTTGTTTATTTAACATCAGCGG 57.933 30.769 0.00 0.00 45.72 5.52
1584 4056 5.378292 TTGTTTATTTAACATCAGCGGCA 57.622 34.783 1.45 0.00 45.72 5.69
1585 4057 5.378292 TGTTTATTTAACATCAGCGGCAA 57.622 34.783 1.45 0.00 41.73 4.52
1631 4116 4.227300 TCATGGTAACCATTCTGCTAACCT 59.773 41.667 0.00 0.00 42.23 3.50
1637 4122 1.281867 CCATTCTGCTAACCTGGGTGA 59.718 52.381 0.00 0.00 0.00 4.02
1734 4219 7.872163 TGCAATTCTATGATTTGAAACACAC 57.128 32.000 6.43 0.00 0.00 3.82
1768 4253 5.929697 TCAACATCATTCGCTATCATTCC 57.070 39.130 0.00 0.00 0.00 3.01
1892 4377 3.012518 GGGATGTTGACTGACAATCCAG 58.987 50.000 12.30 0.00 40.76 3.86
2237 4727 3.702045 AGAAAGAGACTCCATTCCTACCG 59.298 47.826 12.62 0.00 0.00 4.02
2327 4823 5.435291 ACTTATGAGCCAAAGATTCTCTGG 58.565 41.667 1.33 1.33 0.00 3.86
2416 4912 2.819019 TGTGCACATGGGTTACTCATTG 59.181 45.455 17.42 0.00 0.00 2.82
2556 5076 7.201232 CGTTGAGCCGTTAATTTGTTTATTGAG 60.201 37.037 0.00 0.00 0.00 3.02
2627 5148 8.592155 CATTTTGCATTGACTATGAAATCACAG 58.408 33.333 0.73 0.00 36.26 3.66
2888 5413 0.610687 GTGCTAGAAGCTCCCACACT 59.389 55.000 0.00 0.00 42.97 3.55
2904 5526 3.946558 CCACACTAGGGAGTACTCACTAC 59.053 52.174 27.57 13.09 42.51 2.73
3105 5734 1.535687 AGTAGCCGAGGTTGGGTGT 60.536 57.895 0.00 0.00 40.65 4.16
3106 5735 1.375523 GTAGCCGAGGTTGGGTGTG 60.376 63.158 0.00 0.00 40.65 3.82
3199 5828 0.399454 AGCTTGTGCCAGTCATGAGT 59.601 50.000 0.00 0.00 40.80 3.41
3246 5876 7.443477 TCTAGAGTATACTTGCATCTCGTAGT 58.557 38.462 6.88 0.00 0.00 2.73
3312 5942 1.911357 TCTGACATCTGTGGCTGGATT 59.089 47.619 0.00 0.00 33.43 3.01
3315 5945 3.875727 CTGACATCTGTGGCTGGATTAAG 59.124 47.826 0.00 0.00 33.19 1.85
3317 5947 4.263462 TGACATCTGTGGCTGGATTAAGTT 60.263 41.667 0.00 0.00 33.19 2.66
3318 5948 4.012374 ACATCTGTGGCTGGATTAAGTTG 58.988 43.478 0.00 0.00 0.00 3.16
3319 5949 2.436417 TCTGTGGCTGGATTAAGTTGC 58.564 47.619 0.00 0.00 0.00 4.17
3368 6590 3.072211 ACATGTCTTGTCAGCATGTCTG 58.928 45.455 9.94 9.94 46.93 3.51
3454 6690 8.567285 AAATGATAAGGTAGTCAAAGTTCCTG 57.433 34.615 0.00 0.00 0.00 3.86
3455 6691 6.049955 TGATAAGGTAGTCAAAGTTCCTGG 57.950 41.667 0.00 0.00 0.00 4.45
3456 6692 5.546499 TGATAAGGTAGTCAAAGTTCCTGGT 59.454 40.000 0.00 0.00 0.00 4.00
3457 6693 6.727231 TGATAAGGTAGTCAAAGTTCCTGGTA 59.273 38.462 0.00 0.00 0.00 3.25
3458 6694 5.485209 AAGGTAGTCAAAGTTCCTGGTAG 57.515 43.478 0.00 0.00 0.00 3.18
3859 7114 2.343101 CCACGTCGATTTCTTTGGCTA 58.657 47.619 0.00 0.00 0.00 3.93
4383 7786 6.599356 TTTAGGCTTTAGGATTTTTCCCAC 57.401 37.500 0.00 0.00 0.00 4.61
4516 7929 7.331791 ACTTTTGCGGATTTCTCTATTACTCT 58.668 34.615 0.00 0.00 0.00 3.24
4640 8055 5.372373 AGAAAAGAACTTCACTCCTTCAGG 58.628 41.667 0.00 0.00 0.00 3.86
4672 8087 0.710567 GCACAGTCATCACTTCGTCG 59.289 55.000 0.00 0.00 0.00 5.12
4728 8320 1.936547 CTTGCTAAGCCTCAATCGACC 59.063 52.381 0.00 0.00 0.00 4.79
4733 8325 0.457851 AAGCCTCAATCGACCGAGAG 59.542 55.000 13.22 6.42 0.00 3.20
4748 8340 5.220873 CGACCGAGAGATAATGAAGTCTCAA 60.221 44.000 5.32 0.00 42.57 3.02
4751 8343 5.855925 CCGAGAGATAATGAAGTCTCAATCG 59.144 44.000 5.32 6.22 42.57 3.34
4752 8344 6.293680 CCGAGAGATAATGAAGTCTCAATCGA 60.294 42.308 12.59 0.00 42.57 3.59
4831 8423 6.469782 TTTTTCCTTTTCTCTCTTGCATGT 57.530 33.333 0.00 0.00 0.00 3.21
4833 8425 7.581213 TTTTCCTTTTCTCTCTTGCATGTTA 57.419 32.000 0.00 0.00 0.00 2.41
4845 8437 7.362662 TCTCTTGCATGTTATGTCACTTTTTC 58.637 34.615 0.00 0.00 0.00 2.29
4852 8444 7.424803 CATGTTATGTCACTTTTTCTGAACCA 58.575 34.615 0.00 0.00 0.00 3.67
4854 8446 7.254852 TGTTATGTCACTTTTTCTGAACCAAC 58.745 34.615 0.00 0.00 0.00 3.77
4855 8447 5.913137 ATGTCACTTTTTCTGAACCAACA 57.087 34.783 0.00 0.00 0.00 3.33
4856 8448 5.913137 TGTCACTTTTTCTGAACCAACAT 57.087 34.783 0.00 0.00 0.00 2.71
4857 8449 5.649557 TGTCACTTTTTCTGAACCAACATG 58.350 37.500 0.00 0.00 0.00 3.21
4858 8450 5.184864 TGTCACTTTTTCTGAACCAACATGT 59.815 36.000 0.00 0.00 0.00 3.21
4859 8451 6.099341 GTCACTTTTTCTGAACCAACATGTT 58.901 36.000 4.92 4.92 0.00 2.71
4860 8452 7.094162 TGTCACTTTTTCTGAACCAACATGTTA 60.094 33.333 11.53 0.00 0.00 2.41
4861 8453 7.920682 GTCACTTTTTCTGAACCAACATGTTAT 59.079 33.333 11.53 0.00 0.00 1.89
4862 8454 7.920151 TCACTTTTTCTGAACCAACATGTTATG 59.080 33.333 11.53 8.20 0.00 1.90
4864 8456 7.920682 ACTTTTTCTGAACCAACATGTTATGTC 59.079 33.333 11.53 8.93 44.07 3.06
4865 8457 6.951062 TTTCTGAACCAACATGTTATGTCA 57.049 33.333 11.53 12.82 44.07 3.58
4866 8458 5.940192 TCTGAACCAACATGTTATGTCAC 57.060 39.130 11.53 9.78 44.07 3.67
4867 8459 5.620206 TCTGAACCAACATGTTATGTCACT 58.380 37.500 11.53 0.00 44.07 3.41
4897 8489 7.088905 TGAGACTTGGTTAAATCTTAGTCGAC 58.911 38.462 7.70 7.70 37.62 4.20
4901 8493 7.091443 ACTTGGTTAAATCTTAGTCGACTGAG 58.909 38.462 26.80 26.80 0.00 3.35
4930 8522 5.787494 AGCCACACCCATATGAGAATATACT 59.213 40.000 3.65 0.00 0.00 2.12
4933 8525 6.352222 CCACACCCATATGAGAATATACTCCC 60.352 46.154 3.65 0.00 36.22 4.30
4934 8526 5.726793 ACACCCATATGAGAATATACTCCCC 59.273 44.000 3.65 0.00 36.22 4.81
4935 8527 5.966935 CACCCATATGAGAATATACTCCCCT 59.033 44.000 3.65 0.00 36.22 4.79
4936 8528 6.445139 CACCCATATGAGAATATACTCCCCTT 59.555 42.308 3.65 0.00 36.22 3.95
4960 10038 6.894828 TCATACTGCTTTTCGGTTTTCTAAC 58.105 36.000 0.00 0.00 35.51 2.34
5427 10547 7.162082 CCTCTCAACTACTGAACCTTTATTGT 58.838 38.462 0.00 0.00 32.17 2.71
5597 10718 8.193250 TCACTATAAGATCGTTTACTTTTGGC 57.807 34.615 0.00 0.00 0.00 4.52
5626 10750 8.742777 TCTCTTCCCAATTTCATCACTAAATTG 58.257 33.333 12.22 12.22 46.60 2.32
5650 10774 7.097192 TGTGTGAATCATTACTCTTGTAGGAC 58.903 38.462 0.00 0.00 0.00 3.85
6055 11181 4.638865 GTGGCTACAAATCGGGTAAATTCT 59.361 41.667 0.00 0.00 0.00 2.40
6182 11324 6.007076 TGGTGGAAATAAGTAGTTGCATCAA 58.993 36.000 3.87 0.00 39.19 2.57
6206 11348 9.533253 CAAAATGAGTAATTAAATCCATCACCC 57.467 33.333 0.00 0.00 0.00 4.61
6299 11446 5.134725 AGGGCCTCTTATTGATTTGATGT 57.865 39.130 0.00 0.00 0.00 3.06
6583 15091 7.844493 AATAACATACGGTAAGACCATCCTA 57.156 36.000 0.00 0.00 38.47 2.94
6686 15206 7.699709 TCACCCTAACCTGGAATTATAATGA 57.300 36.000 0.00 0.00 0.00 2.57
6697 15217 9.135189 CCTGGAATTATAATGACAAAATCTGGA 57.865 33.333 0.00 0.00 0.00 3.86
6725 15246 8.800370 AATTTTGGTTGTTGTTTTGAGGTTAT 57.200 26.923 0.00 0.00 0.00 1.89
6749 15270 3.552604 TTATTTTGAACTCGTGCCAGC 57.447 42.857 0.00 0.00 0.00 4.85
6771 15293 9.003658 CCAGCTTTCAAGTCTAATCTTCTTTTA 57.996 33.333 0.00 0.00 0.00 1.52
6939 15461 2.820059 TGTAGGTCTGTTGCTGTCAG 57.180 50.000 0.00 0.00 0.00 3.51
6944 15466 1.404181 GGTCTGTTGCTGTCAGCGATA 60.404 52.381 17.86 14.12 46.26 2.92
7001 15526 4.560035 CGCATTCAATAAGACCTTTTGCTG 59.440 41.667 0.00 0.00 0.00 4.41
7151 15682 6.539173 TGGAGAAAGAACTTAAATACCAGCA 58.461 36.000 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.451783 CGCCCCTATTGTGAACTTGC 59.548 55.000 0.00 0.00 0.00 4.01
3 4 2.009774 CTCGCCCCTATTGTGAACTTG 58.990 52.381 0.00 0.00 0.00 3.16
6 7 1.095807 GGCTCGCCCCTATTGTGAAC 61.096 60.000 0.00 0.00 0.00 3.18
8 9 2.908015 GGCTCGCCCCTATTGTGA 59.092 61.111 0.00 0.00 0.00 3.58
9 10 2.588877 CGGCTCGCCCCTATTGTG 60.589 66.667 1.72 0.00 0.00 3.33
10 11 3.861797 CCGGCTCGCCCCTATTGT 61.862 66.667 1.72 0.00 0.00 2.71
11 12 3.521529 CTCCGGCTCGCCCCTATTG 62.522 68.421 0.00 0.00 0.00 1.90
12 13 3.234730 CTCCGGCTCGCCCCTATT 61.235 66.667 0.00 0.00 0.00 1.73
13 14 4.220163 TCTCCGGCTCGCCCCTAT 62.220 66.667 0.00 0.00 0.00 2.57
67 68 4.021925 ACAGGAGGGTTCCAGCGC 62.022 66.667 0.00 0.00 46.64 5.92
69 70 0.606673 GAACACAGGAGGGTTCCAGC 60.607 60.000 0.00 0.00 46.64 4.85
70 71 0.320771 CGAACACAGGAGGGTTCCAG 60.321 60.000 5.15 0.00 46.64 3.86
72 73 0.037232 CTCGAACACAGGAGGGTTCC 60.037 60.000 5.15 0.00 44.39 3.62
73 74 0.680061 ACTCGAACACAGGAGGGTTC 59.320 55.000 0.65 0.65 39.92 3.62
74 75 1.129058 AACTCGAACACAGGAGGGTT 58.871 50.000 0.00 0.00 34.58 4.11
76 77 0.951040 GCAACTCGAACACAGGAGGG 60.951 60.000 0.00 0.00 34.58 4.30
77 78 0.249868 TGCAACTCGAACACAGGAGG 60.250 55.000 0.00 0.00 34.58 4.30
78 79 1.261619 GTTGCAACTCGAACACAGGAG 59.738 52.381 22.36 0.00 36.36 3.69
79 80 1.295792 GTTGCAACTCGAACACAGGA 58.704 50.000 22.36 0.00 0.00 3.86
80 81 0.307760 GGTTGCAACTCGAACACAGG 59.692 55.000 27.64 0.00 0.00 4.00
81 82 1.013596 TGGTTGCAACTCGAACACAG 58.986 50.000 27.64 0.00 0.00 3.66
82 83 1.333308 CATGGTTGCAACTCGAACACA 59.667 47.619 27.64 15.95 0.00 3.72
83 84 1.601903 TCATGGTTGCAACTCGAACAC 59.398 47.619 27.64 10.78 0.00 3.32
85 86 1.398451 CGTCATGGTTGCAACTCGAAC 60.398 52.381 27.64 18.85 0.00 3.95
86 87 0.865111 CGTCATGGTTGCAACTCGAA 59.135 50.000 27.64 12.48 0.00 3.71
87 88 0.032815 TCGTCATGGTTGCAACTCGA 59.967 50.000 27.64 23.08 0.00 4.04
89 90 0.166814 GCTCGTCATGGTTGCAACTC 59.833 55.000 27.64 18.23 0.00 3.01
90 91 0.534877 TGCTCGTCATGGTTGCAACT 60.535 50.000 27.64 7.56 0.00 3.16
91 92 0.110056 CTGCTCGTCATGGTTGCAAC 60.110 55.000 21.59 21.59 33.07 4.17
94 95 2.401766 CCCTGCTCGTCATGGTTGC 61.402 63.158 0.00 0.00 0.00 4.17
95 96 0.742281 CTCCCTGCTCGTCATGGTTG 60.742 60.000 0.00 0.00 32.90 3.77
96 97 1.599047 CTCCCTGCTCGTCATGGTT 59.401 57.895 0.00 0.00 32.90 3.67
97 98 3.023949 GCTCCCTGCTCGTCATGGT 62.024 63.158 0.00 0.00 38.95 3.55
98 99 2.202987 GCTCCCTGCTCGTCATGG 60.203 66.667 0.00 0.00 38.95 3.66
99 100 2.202987 GGCTCCCTGCTCGTCATG 60.203 66.667 0.00 0.00 42.39 3.07
100 101 2.249413 CTTGGCTCCCTGCTCGTCAT 62.249 60.000 0.00 0.00 42.39 3.06
102 103 2.125350 CTTGGCTCCCTGCTCGTC 60.125 66.667 0.00 0.00 42.39 4.20
103 104 3.710722 CCTTGGCTCCCTGCTCGT 61.711 66.667 0.00 0.00 42.39 4.18
106 107 3.580604 CTTGCCTTGGCTCCCTGCT 62.581 63.158 13.18 0.00 42.39 4.24
107 108 3.066814 CTTGCCTTGGCTCCCTGC 61.067 66.667 13.18 0.00 41.94 4.85
108 109 1.975407 CACTTGCCTTGGCTCCCTG 60.975 63.158 13.18 0.00 0.00 4.45
120 121 1.595382 AGTCGTGTCTGGCACTTGC 60.595 57.895 11.02 0.58 45.57 4.01
121 122 0.530650 ACAGTCGTGTCTGGCACTTG 60.531 55.000 11.02 8.55 45.57 3.16
122 123 1.823295 ACAGTCGTGTCTGGCACTT 59.177 52.632 11.02 0.00 45.57 3.16
131 132 1.595382 GCTTGCCTGACAGTCGTGT 60.595 57.895 0.93 0.00 40.71 4.49
132 133 2.661566 CGCTTGCCTGACAGTCGTG 61.662 63.158 0.93 0.00 0.00 4.35
134 135 3.114616 CCGCTTGCCTGACAGTCG 61.115 66.667 0.93 0.00 0.00 4.18
135 136 3.426568 GCCGCTTGCCTGACAGTC 61.427 66.667 0.93 0.00 0.00 3.51
137 138 3.429141 CTGCCGCTTGCCTGACAG 61.429 66.667 0.00 0.00 40.16 3.51
179 180 4.389576 CTTGCTTGCCACCGCGAC 62.390 66.667 8.23 0.00 38.08 5.19
181 182 3.386867 GATCTTGCTTGCCACCGCG 62.387 63.158 0.00 0.00 38.08 6.46
184 185 2.262471 CTGCGATCTTGCTTGCCACC 62.262 60.000 0.00 0.00 35.36 4.61
186 187 2.042259 CCTGCGATCTTGCTTGCCA 61.042 57.895 0.00 0.00 35.36 4.92
187 188 2.796651 CCTGCGATCTTGCTTGCC 59.203 61.111 0.00 0.00 35.36 4.52
189 190 2.402388 CGCCTGCGATCTTGCTTG 59.598 61.111 5.43 0.00 42.83 4.01
190 191 2.821366 CCGCCTGCGATCTTGCTT 60.821 61.111 13.94 0.00 42.83 3.91
208 209 2.892425 GATCAGTTGGCTCGCCGG 60.892 66.667 0.00 0.00 39.42 6.13
209 210 2.892425 GGATCAGTTGGCTCGCCG 60.892 66.667 3.14 0.00 39.42 6.46
211 212 2.892425 CCGGATCAGTTGGCTCGC 60.892 66.667 0.00 0.00 0.00 5.03
212 213 2.892425 GCCGGATCAGTTGGCTCG 60.892 66.667 5.05 0.00 45.40 5.03
216 217 2.827051 CGCATGCCGGATCAGTTGG 61.827 63.158 13.15 0.00 0.00 3.77
217 218 2.711311 CGCATGCCGGATCAGTTG 59.289 61.111 13.15 0.00 0.00 3.16
218 219 3.204827 GCGCATGCCGGATCAGTT 61.205 61.111 13.15 0.00 37.44 3.16
249 250 3.057174 ACACGCACAGGAAACAAGAAAAA 60.057 39.130 0.00 0.00 0.00 1.94
250 251 2.490115 ACACGCACAGGAAACAAGAAAA 59.510 40.909 0.00 0.00 0.00 2.29
253 254 1.745232 AACACGCACAGGAAACAAGA 58.255 45.000 0.00 0.00 0.00 3.02
254 255 2.559998 AAACACGCACAGGAAACAAG 57.440 45.000 0.00 0.00 0.00 3.16
255 256 3.305398 AAAAACACGCACAGGAAACAA 57.695 38.095 0.00 0.00 0.00 2.83
275 276 8.873215 TGTTTTAAAAGTCAAACACACAGAAA 57.127 26.923 0.00 0.00 37.85 2.52
277 278 8.873215 TTTGTTTTAAAAGTCAAACACACAGA 57.127 26.923 10.89 0.00 41.49 3.41
279 280 7.224753 TGCTTTGTTTTAAAAGTCAAACACACA 59.775 29.630 10.89 6.48 41.49 3.72
281 282 7.715265 TGCTTTGTTTTAAAAGTCAAACACA 57.285 28.000 10.89 9.85 41.49 3.72
282 283 9.605955 AATTGCTTTGTTTTAAAAGTCAAACAC 57.394 25.926 10.89 8.12 41.49 3.32
287 288 9.015577 CGTCTAATTGCTTTGTTTTAAAAGTCA 57.984 29.630 0.00 0.00 39.02 3.41
288 289 8.476925 CCGTCTAATTGCTTTGTTTTAAAAGTC 58.523 33.333 0.00 0.00 39.02 3.01
289 290 7.977293 ACCGTCTAATTGCTTTGTTTTAAAAGT 59.023 29.630 0.00 0.00 39.02 2.66
290 291 8.347729 ACCGTCTAATTGCTTTGTTTTAAAAG 57.652 30.769 0.00 0.00 39.66 2.27
291 292 8.596380 CAACCGTCTAATTGCTTTGTTTTAAAA 58.404 29.630 0.00 0.00 0.00 1.52
295 296 5.047188 CCAACCGTCTAATTGCTTTGTTTT 58.953 37.500 0.00 0.00 0.00 2.43
296 297 4.500716 CCCAACCGTCTAATTGCTTTGTTT 60.501 41.667 0.00 0.00 0.00 2.83
297 298 3.005367 CCCAACCGTCTAATTGCTTTGTT 59.995 43.478 0.00 0.00 0.00 2.83
298 299 2.556622 CCCAACCGTCTAATTGCTTTGT 59.443 45.455 0.00 0.00 0.00 2.83
301 302 2.817844 GTTCCCAACCGTCTAATTGCTT 59.182 45.455 0.00 0.00 0.00 3.91
302 303 2.433436 GTTCCCAACCGTCTAATTGCT 58.567 47.619 0.00 0.00 0.00 3.91
303 304 1.129811 CGTTCCCAACCGTCTAATTGC 59.870 52.381 0.00 0.00 0.00 3.56
304 305 1.735571 CCGTTCCCAACCGTCTAATTG 59.264 52.381 0.00 0.00 0.00 2.32
305 306 1.624813 TCCGTTCCCAACCGTCTAATT 59.375 47.619 0.00 0.00 0.00 1.40
306 307 1.269012 TCCGTTCCCAACCGTCTAAT 58.731 50.000 0.00 0.00 0.00 1.73
307 308 1.066716 CATCCGTTCCCAACCGTCTAA 60.067 52.381 0.00 0.00 0.00 2.10
308 309 0.533491 CATCCGTTCCCAACCGTCTA 59.467 55.000 0.00 0.00 0.00 2.59
309 310 1.295423 CATCCGTTCCCAACCGTCT 59.705 57.895 0.00 0.00 0.00 4.18
310 311 0.247185 TACATCCGTTCCCAACCGTC 59.753 55.000 0.00 0.00 0.00 4.79
311 312 0.906775 ATACATCCGTTCCCAACCGT 59.093 50.000 0.00 0.00 0.00 4.83
312 313 1.578583 GATACATCCGTTCCCAACCG 58.421 55.000 0.00 0.00 0.00 4.44
313 314 1.578583 CGATACATCCGTTCCCAACC 58.421 55.000 0.00 0.00 0.00 3.77
314 315 1.578583 CCGATACATCCGTTCCCAAC 58.421 55.000 0.00 0.00 0.00 3.77
316 317 2.035237 GCCCGATACATCCGTTCCCA 62.035 60.000 0.00 0.00 0.00 4.37
317 318 1.301479 GCCCGATACATCCGTTCCC 60.301 63.158 0.00 0.00 0.00 3.97
318 319 1.663702 CGCCCGATACATCCGTTCC 60.664 63.158 0.00 0.00 0.00 3.62
320 321 2.420043 CCGCCCGATACATCCGTT 59.580 61.111 0.00 0.00 0.00 4.44
322 323 3.991051 AGCCGCCCGATACATCCG 61.991 66.667 0.00 0.00 0.00 4.18
323 324 2.357517 CAGCCGCCCGATACATCC 60.358 66.667 0.00 0.00 0.00 3.51
324 325 2.357517 CCAGCCGCCCGATACATC 60.358 66.667 0.00 0.00 0.00 3.06
343 344 1.815817 AATTGTTGGGCCGGTCAAGC 61.816 55.000 9.07 0.00 0.00 4.01
344 345 0.243636 GAATTGTTGGGCCGGTCAAG 59.756 55.000 9.07 0.00 0.00 3.02
346 347 0.893270 CTGAATTGTTGGGCCGGTCA 60.893 55.000 9.07 1.16 0.00 4.02
347 348 1.883021 CTGAATTGTTGGGCCGGTC 59.117 57.895 1.90 0.00 0.00 4.79
348 349 2.275380 GCTGAATTGTTGGGCCGGT 61.275 57.895 1.90 0.00 0.00 5.28
349 350 2.573340 GCTGAATTGTTGGGCCGG 59.427 61.111 0.00 0.00 0.00 6.13
351 352 2.573340 CGGCTGAATTGTTGGGCC 59.427 61.111 0.00 0.00 39.43 5.80
352 353 2.275380 ACCGGCTGAATTGTTGGGC 61.275 57.895 0.00 0.00 0.00 5.36
354 355 1.080569 GCACCGGCTGAATTGTTGG 60.081 57.895 0.00 0.00 36.96 3.77
355 356 1.442520 CGCACCGGCTGAATTGTTG 60.443 57.895 0.00 0.00 38.10 3.33
356 357 2.953821 CGCACCGGCTGAATTGTT 59.046 55.556 0.00 0.00 38.10 2.83
380 381 6.294010 GGAAAAGATAAAAGGGCGCTTATAGG 60.294 42.308 17.25 0.00 0.00 2.57
381 382 6.565999 CGGAAAAGATAAAAGGGCGCTTATAG 60.566 42.308 17.25 0.00 0.00 1.31
382 383 5.237779 CGGAAAAGATAAAAGGGCGCTTATA 59.762 40.000 17.25 0.00 0.00 0.98
384 385 3.375922 CGGAAAAGATAAAAGGGCGCTTA 59.624 43.478 17.25 2.06 0.00 3.09
386 387 1.743394 CGGAAAAGATAAAAGGGCGCT 59.257 47.619 7.64 0.00 0.00 5.92
387 388 1.797713 GCGGAAAAGATAAAAGGGCGC 60.798 52.381 0.00 0.00 0.00 6.53
388 389 1.743394 AGCGGAAAAGATAAAAGGGCG 59.257 47.619 0.00 0.00 0.00 6.13
389 390 2.752903 TGAGCGGAAAAGATAAAAGGGC 59.247 45.455 0.00 0.00 0.00 5.19
390 391 5.582689 ATTGAGCGGAAAAGATAAAAGGG 57.417 39.130 0.00 0.00 0.00 3.95
391 392 9.831737 CATATATTGAGCGGAAAAGATAAAAGG 57.168 33.333 0.00 0.00 0.00 3.11
394 395 9.554395 TGTCATATATTGAGCGGAAAAGATAAA 57.446 29.630 0.00 0.00 34.17 1.40
397 398 8.627208 AATGTCATATATTGAGCGGAAAAGAT 57.373 30.769 0.00 0.00 34.17 2.40
398 399 8.450578 AAATGTCATATATTGAGCGGAAAAGA 57.549 30.769 0.00 0.00 34.17 2.52
421 422 9.675464 AGGTGGAATATTCGTCAGTATTTTAAA 57.325 29.630 9.32 0.00 0.00 1.52
422 423 9.675464 AAGGTGGAATATTCGTCAGTATTTTAA 57.325 29.630 9.32 0.00 0.00 1.52
423 424 9.321562 GAAGGTGGAATATTCGTCAGTATTTTA 57.678 33.333 9.32 0.00 0.00 1.52
424 425 7.011109 CGAAGGTGGAATATTCGTCAGTATTTT 59.989 37.037 9.32 0.00 40.58 1.82
425 426 6.479001 CGAAGGTGGAATATTCGTCAGTATTT 59.521 38.462 9.32 0.00 40.58 1.40
426 427 5.983720 CGAAGGTGGAATATTCGTCAGTATT 59.016 40.000 9.32 0.00 40.58 1.89
427 428 5.529791 CGAAGGTGGAATATTCGTCAGTAT 58.470 41.667 9.32 0.00 40.58 2.12
429 430 3.782046 CGAAGGTGGAATATTCGTCAGT 58.218 45.455 9.32 0.00 40.58 3.41
435 436 7.331193 GGACACATATACGAAGGTGGAATATTC 59.669 40.741 6.93 6.93 35.62 1.75
436 437 7.159372 GGACACATATACGAAGGTGGAATATT 58.841 38.462 0.00 0.00 35.62 1.28
438 439 5.278610 CGGACACATATACGAAGGTGGAATA 60.279 44.000 0.00 0.00 35.62 1.75
439 440 4.500887 CGGACACATATACGAAGGTGGAAT 60.501 45.833 0.00 0.00 35.62 3.01
440 441 3.181484 CGGACACATATACGAAGGTGGAA 60.181 47.826 0.00 0.00 35.62 3.53
441 442 2.359848 CGGACACATATACGAAGGTGGA 59.640 50.000 0.00 0.00 35.62 4.02
442 443 2.739292 CGGACACATATACGAAGGTGG 58.261 52.381 0.00 0.00 35.62 4.61
443 444 2.124903 GCGGACACATATACGAAGGTG 58.875 52.381 0.00 0.00 37.29 4.00
444 445 1.752498 TGCGGACACATATACGAAGGT 59.248 47.619 0.00 0.00 0.00 3.50
445 446 2.502213 TGCGGACACATATACGAAGG 57.498 50.000 0.00 0.00 0.00 3.46
446 447 2.987149 GGATGCGGACACATATACGAAG 59.013 50.000 0.00 0.00 0.00 3.79
447 448 2.606065 CGGATGCGGACACATATACGAA 60.606 50.000 0.00 0.00 0.00 3.85
448 449 1.068816 CGGATGCGGACACATATACGA 60.069 52.381 0.00 0.00 0.00 3.43
449 450 1.336877 CGGATGCGGACACATATACG 58.663 55.000 0.00 0.00 0.00 3.06
450 451 1.000506 ACCGGATGCGGACACATATAC 59.999 52.381 33.63 0.00 0.00 1.47
451 452 1.271379 GACCGGATGCGGACACATATA 59.729 52.381 33.63 0.00 0.00 0.86
452 453 0.033504 GACCGGATGCGGACACATAT 59.966 55.000 33.63 7.65 0.00 1.78
454 455 2.186903 GACCGGATGCGGACACAT 59.813 61.111 33.63 9.40 0.00 3.21
455 456 4.077184 GGACCGGATGCGGACACA 62.077 66.667 33.63 0.00 0.00 3.72
481 482 1.779025 TACGCAGTATCCGTCTCGGC 61.779 60.000 3.12 0.00 45.01 5.54
482 483 2.314256 TACGCAGTATCCGTCTCGG 58.686 57.895 1.45 1.45 46.19 4.63
492 493 3.725485 CCACGAATGGTACGCAGTA 57.275 52.632 0.00 0.00 39.65 2.74
493 494 4.590487 CCACGAATGGTACGCAGT 57.410 55.556 0.00 0.00 41.64 4.40
502 503 0.519519 TAAAAGCGGTGCCACGAATG 59.480 50.000 0.98 0.00 35.47 2.67
503 504 1.400494 GATAAAAGCGGTGCCACGAAT 59.600 47.619 0.98 0.00 35.47 3.34
504 505 0.800012 GATAAAAGCGGTGCCACGAA 59.200 50.000 0.98 0.00 35.47 3.85
506 507 0.519519 TTGATAAAAGCGGTGCCACG 59.480 50.000 0.00 0.00 0.00 4.94
507 508 1.268352 TGTTGATAAAAGCGGTGCCAC 59.732 47.619 0.00 0.00 0.00 5.01
508 509 1.610363 TGTTGATAAAAGCGGTGCCA 58.390 45.000 0.00 0.00 0.00 4.92
509 510 2.791158 CGATGTTGATAAAAGCGGTGCC 60.791 50.000 0.00 0.00 0.00 5.01
510 511 2.159572 ACGATGTTGATAAAAGCGGTGC 60.160 45.455 0.00 0.00 0.00 5.01
511 512 3.416277 CACGATGTTGATAAAAGCGGTG 58.584 45.455 0.00 0.00 0.00 4.94
513 514 2.675844 TCCACGATGTTGATAAAAGCGG 59.324 45.455 0.00 0.00 0.00 5.52
514 515 3.242413 CCTCCACGATGTTGATAAAAGCG 60.242 47.826 0.00 0.00 0.00 4.68
515 516 3.938963 TCCTCCACGATGTTGATAAAAGC 59.061 43.478 0.00 0.00 0.00 3.51
516 517 6.371548 TCTTTCCTCCACGATGTTGATAAAAG 59.628 38.462 0.00 0.00 0.00 2.27
517 518 6.234920 TCTTTCCTCCACGATGTTGATAAAA 58.765 36.000 0.00 0.00 0.00 1.52
518 519 5.800296 TCTTTCCTCCACGATGTTGATAAA 58.200 37.500 0.00 0.00 0.00 1.40
521 522 3.981071 TCTTTCCTCCACGATGTTGAT 57.019 42.857 0.00 0.00 0.00 2.57
522 523 3.762407 TTCTTTCCTCCACGATGTTGA 57.238 42.857 0.00 0.00 0.00 3.18
523 524 4.829064 TTTTCTTTCCTCCACGATGTTG 57.171 40.909 0.00 0.00 0.00 3.33
524 525 5.070001 TCATTTTCTTTCCTCCACGATGTT 58.930 37.500 0.00 0.00 0.00 2.71
525 526 4.651778 TCATTTTCTTTCCTCCACGATGT 58.348 39.130 0.00 0.00 0.00 3.06
526 527 5.503031 CGATCATTTTCTTTCCTCCACGATG 60.503 44.000 0.00 0.00 0.00 3.84
527 528 4.572389 CGATCATTTTCTTTCCTCCACGAT 59.428 41.667 0.00 0.00 0.00 3.73
528 529 3.932710 CGATCATTTTCTTTCCTCCACGA 59.067 43.478 0.00 0.00 0.00 4.35
530 531 4.201724 CGACGATCATTTTCTTTCCTCCAC 60.202 45.833 0.00 0.00 0.00 4.02
532 533 3.933332 ACGACGATCATTTTCTTTCCTCC 59.067 43.478 0.00 0.00 0.00 4.30
547 548 1.505353 GACGGTTGGAGACGACGAT 59.495 57.895 0.00 0.00 46.42 3.73
580 581 2.552367 GGGAGAGGAAGAGGAGGAAAA 58.448 52.381 0.00 0.00 0.00 2.29
615 616 4.388499 TCGGGTTGAAGCGAGGGC 62.388 66.667 0.00 0.00 40.37 5.19
617 618 2.434359 GGTCGGGTTGAAGCGAGG 60.434 66.667 0.00 0.00 0.00 4.63
621 622 3.056328 GCTGGGTCGGGTTGAAGC 61.056 66.667 0.00 0.00 0.00 3.86
624 625 3.948719 GGTGCTGGGTCGGGTTGA 61.949 66.667 0.00 0.00 0.00 3.18
734 758 4.758165 AGGTCGTACCGAAAAATCAAATGT 59.242 37.500 0.00 0.00 44.90 2.71
741 765 5.049886 GTGAAAGAAGGTCGTACCGAAAAAT 60.050 40.000 0.00 0.00 44.90 1.82
744 768 3.383761 GTGAAAGAAGGTCGTACCGAAA 58.616 45.455 0.00 0.00 44.90 3.46
755 781 2.200373 AATCACCGGGTGAAAGAAGG 57.800 50.000 31.78 2.05 45.96 3.46
776 802 2.936032 GGAGGCAGGGGGTTCAGT 60.936 66.667 0.00 0.00 0.00 3.41
788 814 0.453390 CAGCGAAAAAGATGGGAGGC 59.547 55.000 0.00 0.00 0.00 4.70
885 919 7.067615 TCACCCAGCGCAATAATAAAGAAAATA 59.932 33.333 11.47 0.00 0.00 1.40
886 920 6.042143 CACCCAGCGCAATAATAAAGAAAAT 58.958 36.000 11.47 0.00 0.00 1.82
889 923 4.265893 TCACCCAGCGCAATAATAAAGAA 58.734 39.130 11.47 0.00 0.00 2.52
890 924 3.879998 TCACCCAGCGCAATAATAAAGA 58.120 40.909 11.47 0.00 0.00 2.52
891 925 4.836125 ATCACCCAGCGCAATAATAAAG 57.164 40.909 11.47 0.00 0.00 1.85
892 926 5.590530 AAATCACCCAGCGCAATAATAAA 57.409 34.783 11.47 0.00 0.00 1.40
899 933 1.271102 GGTTAAAATCACCCAGCGCAA 59.729 47.619 11.47 0.00 0.00 4.85
905 939 5.452636 GCAGAGTTTTGGTTAAAATCACCCA 60.453 40.000 0.00 0.00 41.92 4.51
908 942 7.491048 TCAAAGCAGAGTTTTGGTTAAAATCAC 59.509 33.333 6.51 0.00 41.92 3.06
948 1002 5.756195 TTCAGACAGTGAATCACCAAAAG 57.244 39.130 10.12 0.00 40.45 2.27
964 1018 7.078011 AGAGCGGAAAGAATTAAATTCAGAC 57.922 36.000 0.00 0.00 41.71 3.51
974 1028 1.473434 CGGCCTAGAGCGGAAAGAATT 60.473 52.381 0.00 0.00 44.26 2.17
975 1029 0.105039 CGGCCTAGAGCGGAAAGAAT 59.895 55.000 0.00 0.00 44.26 2.40
1017 3373 2.743928 GTCTGGCTTCTGGTGCGG 60.744 66.667 0.00 0.00 0.00 5.69
1083 3444 6.734137 AGAATGAATAAGTAGCGAGACTGAG 58.266 40.000 0.00 0.00 0.00 3.35
1113 3474 4.968812 TGGATCTACACAAATCGTACGA 57.031 40.909 21.93 21.93 0.00 3.43
1124 3485 5.934625 ACACAGTTCTGAAATGGATCTACAC 59.065 40.000 20.28 0.00 0.00 2.90
1126 3487 6.428159 ACAACACAGTTCTGAAATGGATCTAC 59.572 38.462 20.28 0.00 0.00 2.59
1127 3488 6.533730 ACAACACAGTTCTGAAATGGATCTA 58.466 36.000 20.28 0.00 0.00 1.98
1130 3491 6.942005 TCATACAACACAGTTCTGAAATGGAT 59.058 34.615 20.28 6.55 0.00 3.41
1158 3525 3.919216 CCTAGTTAGGGAAGCATCATCG 58.081 50.000 0.00 0.00 39.86 3.84
1195 3655 5.871524 GCCAAATTCCTCTTCAAAAGGATTC 59.128 40.000 0.00 0.00 42.44 2.52
1284 3744 5.700402 AGCAATAGATACAACAGTTCCCT 57.300 39.130 0.00 0.00 0.00 4.20
1288 3748 7.549134 TCGAATGAAGCAATAGATACAACAGTT 59.451 33.333 0.00 0.00 0.00 3.16
1300 3760 3.555547 CACCGTCATCGAATGAAGCAATA 59.444 43.478 0.00 0.00 41.69 1.90
1358 3818 9.186323 CTGAATCATGAACTACTAACGAATAGG 57.814 37.037 0.00 0.00 35.81 2.57
1382 3842 9.844790 TGCACAAGATTGTATTTCTAAATTCTG 57.155 29.630 0.00 0.00 39.91 3.02
1390 3850 6.899393 TTTCCTGCACAAGATTGTATTTCT 57.101 33.333 0.00 0.00 39.91 2.52
1446 3906 3.744426 AGTTTTCGGATTGTTCACGGTAG 59.256 43.478 0.00 0.00 0.00 3.18
1462 3922 7.016361 TGAAGTCAGAAAGCTTGTAGTTTTC 57.984 36.000 0.00 7.63 43.11 2.29
1517 3986 5.052481 CCTCATATCGTGAAAGATCTTGCA 58.948 41.667 12.45 12.45 36.14 4.08
1564 4036 5.861787 AGTTTGCCGCTGATGTTAAATAAAC 59.138 36.000 0.00 0.00 38.67 2.01
1565 4037 6.019779 AGTTTGCCGCTGATGTTAAATAAA 57.980 33.333 0.00 0.00 0.00 1.40
1567 4039 6.935741 ATAGTTTGCCGCTGATGTTAAATA 57.064 33.333 0.00 0.00 0.00 1.40
1568 4040 5.835113 ATAGTTTGCCGCTGATGTTAAAT 57.165 34.783 0.00 0.00 0.00 1.40
1570 4042 4.980590 CAATAGTTTGCCGCTGATGTTAA 58.019 39.130 0.00 0.00 0.00 2.01
1571 4043 4.614555 CAATAGTTTGCCGCTGATGTTA 57.385 40.909 0.00 0.00 0.00 2.41
1572 4044 3.492421 CAATAGTTTGCCGCTGATGTT 57.508 42.857 0.00 0.00 0.00 2.71
1631 4116 3.568007 GCAAGACAACAAGTATTCACCCA 59.432 43.478 0.00 0.00 26.83 4.51
1637 4122 9.630098 CAATGATAAAGCAAGACAACAAGTATT 57.370 29.630 0.00 0.00 30.24 1.89
1768 4253 6.154203 TGATCTAGACATGCTACTTGAAGG 57.846 41.667 0.00 0.00 0.00 3.46
1892 4377 2.413765 CTCGCGGTAAGCTCCTCC 59.586 66.667 6.13 0.00 45.59 4.30
1917 4402 5.824904 AGTAATTTCACATGTGGAGATGC 57.175 39.130 25.16 12.65 0.00 3.91
2150 4640 2.539081 GGGCCCTCCAACTCCAGTT 61.539 63.158 17.04 0.00 39.12 3.16
2327 4823 9.785982 AAAAGAGGAAGAGATATATAAACCAGC 57.214 33.333 0.00 0.00 0.00 4.85
2359 4855 6.609212 AGATCAAGCAGGAGAGAGTAAACATA 59.391 38.462 0.00 0.00 0.00 2.29
2360 4856 5.424895 AGATCAAGCAGGAGAGAGTAAACAT 59.575 40.000 0.00 0.00 0.00 2.71
2556 5076 8.082334 TGCAAATAACCTTAAACAATGCTTTC 57.918 30.769 0.00 0.00 32.74 2.62
2774 5296 1.966762 CAAATCAGGCCAGGCGTTT 59.033 52.632 5.01 0.41 0.00 3.60
2888 5413 3.618351 GTGCAGTAGTGAGTACTCCCTA 58.382 50.000 20.11 15.24 40.27 3.53
3105 5734 7.517614 TGTTTCAGTTTCAAATATGCTACCA 57.482 32.000 0.00 0.00 0.00 3.25
3106 5735 8.243426 TCATGTTTCAGTTTCAAATATGCTACC 58.757 33.333 0.00 0.00 34.20 3.18
3170 5799 2.155279 TGGCACAAGCTAACGCATTTA 58.845 42.857 0.00 0.00 41.70 1.40
3199 5828 9.515020 CTAGAAGCTACAAAAACATCAAAACAA 57.485 29.630 0.00 0.00 0.00 2.83
3246 5876 1.702182 TGTTCTCAAATGCAGGCCAA 58.298 45.000 5.01 0.00 0.00 4.52
3293 5923 2.414994 AATCCAGCCACAGATGTCAG 57.585 50.000 0.00 0.00 0.00 3.51
3312 5942 1.202592 TCAAGGTCACGCTGCAACTTA 60.203 47.619 0.00 0.00 0.00 2.24
3315 5945 1.279840 GTCAAGGTCACGCTGCAAC 59.720 57.895 0.00 0.00 0.00 4.17
3317 5947 1.887242 GTGTCAAGGTCACGCTGCA 60.887 57.895 0.00 0.00 0.00 4.41
3318 5948 1.230635 ATGTGTCAAGGTCACGCTGC 61.231 55.000 0.00 0.00 38.48 5.25
3319 5949 2.078849 TATGTGTCAAGGTCACGCTG 57.921 50.000 0.00 0.00 38.48 5.18
3452 6688 0.544357 TGTCCACCCTGACCTACCAG 60.544 60.000 0.00 0.00 34.25 4.00
3453 6689 0.834687 GTGTCCACCCTGACCTACCA 60.835 60.000 0.00 0.00 34.25 3.25
3454 6690 1.885163 CGTGTCCACCCTGACCTACC 61.885 65.000 0.00 0.00 34.25 3.18
3455 6691 1.590147 CGTGTCCACCCTGACCTAC 59.410 63.158 0.00 0.00 34.25 3.18
3456 6692 1.608336 CCGTGTCCACCCTGACCTA 60.608 63.158 0.00 0.00 34.25 3.08
3457 6693 2.923035 CCGTGTCCACCCTGACCT 60.923 66.667 0.00 0.00 34.25 3.85
3458 6694 3.236003 GACCGTGTCCACCCTGACC 62.236 68.421 0.00 0.00 34.25 4.02
3859 7114 2.820787 CCAGAGTCTGGTTAGTCGTCTT 59.179 50.000 28.38 0.00 45.82 3.01
4342 7652 7.931275 AGCCTAAATATTTCGATGAAGAAACC 58.069 34.615 3.39 0.00 42.12 3.27
4383 7786 7.535258 GTCAGATTGCACTAAATAACAACACAG 59.465 37.037 0.00 0.00 0.00 3.66
4516 7929 5.065602 GCAGCAGAATGTGATAAACTCATCA 59.934 40.000 0.00 0.00 39.31 3.07
4640 8055 3.963665 TGACTGTGCACAATTTAGCAAC 58.036 40.909 21.98 0.00 43.20 4.17
4672 8087 2.035066 GCATGGTAGTGATGAATTGCCC 59.965 50.000 0.00 0.00 0.00 5.36
4728 8320 6.663565 TCGATTGAGACTTCATTATCTCTCG 58.336 40.000 3.17 5.08 41.69 4.04
4762 8354 7.148356 GCACAAATCTCAATGTAAGATCTCACA 60.148 37.037 0.00 0.00 32.29 3.58
4809 8401 6.469782 AACATGCAAGAGAGAAAAGGAAAA 57.530 33.333 0.00 0.00 0.00 2.29
4823 8415 7.140705 TCAGAAAAAGTGACATAACATGCAAG 58.859 34.615 0.00 0.00 0.00 4.01
4831 8423 7.397892 TGTTGGTTCAGAAAAAGTGACATAA 57.602 32.000 0.00 0.00 0.00 1.90
4833 8425 5.913137 TGTTGGTTCAGAAAAAGTGACAT 57.087 34.783 0.00 0.00 0.00 3.06
4845 8437 5.947228 AGTGACATAACATGTTGGTTCAG 57.053 39.130 21.42 6.75 45.03 3.02
4862 8454 3.460857 ACCAAGTCTCAGTCAAGTGAC 57.539 47.619 3.12 3.12 45.08 3.67
4863 8455 5.607939 TTAACCAAGTCTCAGTCAAGTGA 57.392 39.130 0.00 0.00 0.00 3.41
4864 8456 6.708054 AGATTTAACCAAGTCTCAGTCAAGTG 59.292 38.462 0.00 0.00 0.00 3.16
4865 8457 6.831976 AGATTTAACCAAGTCTCAGTCAAGT 58.168 36.000 0.00 0.00 0.00 3.16
4866 8458 7.736447 AAGATTTAACCAAGTCTCAGTCAAG 57.264 36.000 0.00 0.00 30.05 3.02
4867 8459 8.429641 ACTAAGATTTAACCAAGTCTCAGTCAA 58.570 33.333 0.00 0.00 25.58 3.18
4897 8489 0.904865 TGGGTGTGGCTAGGTCTCAG 60.905 60.000 0.00 0.00 0.00 3.35
4901 8493 2.037772 CTCATATGGGTGTGGCTAGGTC 59.962 54.545 2.13 0.00 0.00 3.85
4930 8522 2.355716 CCGAAAAGCAGTATGAAGGGGA 60.356 50.000 0.00 0.00 39.69 4.81
4933 8525 4.766404 AAACCGAAAAGCAGTATGAAGG 57.234 40.909 0.00 0.00 39.69 3.46
4934 8526 6.002062 AGAAAACCGAAAAGCAGTATGAAG 57.998 37.500 0.00 0.00 39.69 3.02
4935 8527 7.357303 GTTAGAAAACCGAAAAGCAGTATGAA 58.643 34.615 0.00 0.00 39.69 2.57
4936 8528 6.072893 GGTTAGAAAACCGAAAAGCAGTATGA 60.073 38.462 0.00 0.00 45.61 2.15
4960 10038 2.511637 AGGGAAGGGAAATAAGCTGAGG 59.488 50.000 0.00 0.00 0.00 3.86
5313 10405 2.845659 TGGATAACCACTGGACCTCAT 58.154 47.619 0.71 0.00 41.77 2.90
5427 10547 2.672651 CATGCCCGCTGACCACAA 60.673 61.111 0.00 0.00 0.00 3.33
5570 10690 9.968743 CCAAAAGTAAACGATCTTATAGTGAAC 57.031 33.333 0.00 0.00 0.00 3.18
5582 10702 6.349363 GGAAGAGAATGCCAAAAGTAAACGAT 60.349 38.462 0.00 0.00 0.00 3.73
5597 10718 6.770746 AGTGATGAAATTGGGAAGAGAATG 57.229 37.500 0.00 0.00 0.00 2.67
5626 10750 6.253727 CGTCCTACAAGAGTAATGATTCACAC 59.746 42.308 0.00 0.00 0.00 3.82
5650 10774 2.670414 TGCAAGCAAAACACCTTTTTCG 59.330 40.909 0.00 0.00 0.00 3.46
6055 11181 1.072266 AGTATCCCACTTGTGGCCAA 58.928 50.000 7.24 0.00 31.59 4.52
6182 11324 7.843760 TGGGGTGATGGATTTAATTACTCATTT 59.156 33.333 0.00 0.00 0.00 2.32
6530 15017 5.939764 ATGCACAAGAGTACTATTCCAGA 57.060 39.130 0.00 0.00 0.00 3.86
6583 15091 3.470709 CTCAACAGTCAGACACAACCAT 58.529 45.455 2.66 0.00 0.00 3.55
6651 15163 2.628657 GGTTAGGGTGATGCTACGAGAT 59.371 50.000 0.00 0.00 0.00 2.75
6686 15206 9.625747 AACAACCAAAATTAATCCAGATTTTGT 57.374 25.926 15.97 0.00 45.21 2.83
6697 15217 8.800370 ACCTCAAAACAACAACCAAAATTAAT 57.200 26.923 0.00 0.00 0.00 1.40
6749 15270 8.989980 ACCGTAAAAGAAGATTAGACTTGAAAG 58.010 33.333 0.00 0.00 0.00 2.62
6771 15293 1.339929 GAGGCAAAATGGTTCAACCGT 59.660 47.619 1.02 0.00 42.58 4.83
6939 15461 3.189287 CCTGTTTGGGCTATGATTATCGC 59.811 47.826 0.00 0.00 0.00 4.58
6944 15466 5.518865 ACAATACCTGTTTGGGCTATGATT 58.481 37.500 0.00 0.00 41.11 2.57
7151 15682 7.179338 ACAGTTCATCACATTAGTAGAGTTCCT 59.821 37.037 0.00 0.00 0.00 3.36
7257 15789 5.745769 GCGTACACTAGTATTTCAGGGTTAC 59.254 44.000 0.00 0.00 31.84 2.50
7258 15790 5.418524 TGCGTACACTAGTATTTCAGGGTTA 59.581 40.000 0.00 0.00 31.84 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.