Multiple sequence alignment - TraesCS3D01G068900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G068900 chr3D 100.000 9741 0 0 1 9741 30292260 30302000 0.000000e+00 17989.0
1 TraesCS3D01G068900 chr3D 98.953 191 2 0 1 191 386850956 386850766 9.370000e-90 342.0
2 TraesCS3D01G068900 chr3D 98.947 190 2 0 1 190 63314403 63314214 3.370000e-89 340.0
3 TraesCS3D01G068900 chr3D 98.947 190 2 0 1 190 262806096 262805907 3.370000e-89 340.0
4 TraesCS3D01G068900 chr3D 94.545 55 2 1 2636 2690 341550603 341550550 6.270000e-12 84.2
5 TraesCS3D01G068900 chr3B 93.922 9032 356 98 191 9084 52735704 52726728 0.000000e+00 13459.0
6 TraesCS3D01G068900 chr3B 89.778 225 15 3 9502 9718 52726247 52726023 2.070000e-71 281.0
7 TraesCS3D01G068900 chr3B 90.141 71 5 2 2634 2703 392299381 392299450 3.750000e-14 91.6
8 TraesCS3D01G068900 chr3A 94.833 8555 283 66 661 9121 42023966 42032455 0.000000e+00 13202.0
9 TraesCS3D01G068900 chr3A 84.683 457 37 13 9303 9741 42032491 42032932 9.040000e-115 425.0
10 TraesCS3D01G068900 chr3A 90.977 266 14 2 9486 9741 42383936 42384201 5.600000e-92 350.0
11 TraesCS3D01G068900 chr3A 90.608 181 7 2 9571 9741 42034652 42034832 2.120000e-56 231.0
12 TraesCS3D01G068900 chr3A 100.000 45 0 0 9031 9075 42032451 42032495 6.270000e-12 84.2
13 TraesCS3D01G068900 chr5B 94.282 717 37 4 1608 2322 517614319 517615033 0.000000e+00 1094.0
14 TraesCS3D01G068900 chr5B 96.030 403 14 2 1920 2322 181981394 181980994 0.000000e+00 654.0
15 TraesCS3D01G068900 chr4B 95.643 459 17 3 1865 2322 523376788 523377244 0.000000e+00 734.0
16 TraesCS3D01G068900 chr4B 98.039 51 1 0 2639 2689 23660829 23660879 1.350000e-13 89.8
17 TraesCS3D01G068900 chr2B 96.088 409 14 2 1915 2323 73347510 73347104 0.000000e+00 665.0
18 TraesCS3D01G068900 chr2B 96.226 53 1 1 2638 2690 262898078 262898129 1.740000e-12 86.1
19 TraesCS3D01G068900 chr1B 95.854 410 15 2 1915 2323 669046467 669046875 0.000000e+00 662.0
20 TraesCS3D01G068900 chr1B 77.140 888 164 33 5512 6382 139665139 139666004 6.840000e-131 479.0
21 TraesCS3D01G068900 chr1B 81.653 496 74 14 4091 4581 139663611 139664094 7.090000e-106 396.0
22 TraesCS3D01G068900 chr1A 95.844 409 15 2 1915 2322 465906270 465906677 0.000000e+00 660.0
23 TraesCS3D01G068900 chr1A 95.844 409 15 2 1915 2322 468839130 468838723 0.000000e+00 660.0
24 TraesCS3D01G068900 chr1A 81.653 496 74 14 4091 4581 82522227 82522710 7.090000e-106 396.0
25 TraesCS3D01G068900 chr1D 77.602 884 150 39 5512 6382 86920545 86921393 8.790000e-135 492.0
26 TraesCS3D01G068900 chr1D 81.048 496 77 14 4091 4581 86919023 86919506 7.140000e-101 379.0
27 TraesCS3D01G068900 chr1D 98.446 193 2 1 1 192 256485191 256484999 1.210000e-88 339.0
28 TraesCS3D01G068900 chr7A 99.474 190 0 1 6197 6385 254257417 254257228 2.600000e-90 344.0
29 TraesCS3D01G068900 chr7D 98.947 190 2 0 1 190 521990822 521990633 3.370000e-89 340.0
30 TraesCS3D01G068900 chr7D 96.226 53 2 0 2637 2689 485090921 485090973 4.850000e-13 87.9
31 TraesCS3D01G068900 chr6D 98.947 190 2 0 1 190 325470223 325470034 3.370000e-89 340.0
32 TraesCS3D01G068900 chr6D 97.949 195 4 0 1 195 132651375 132651569 1.210000e-88 339.0
33 TraesCS3D01G068900 chr6D 90.476 63 4 2 2623 2683 122744402 122744340 2.250000e-11 82.4
34 TraesCS3D01G068900 chr4D 98.438 192 3 0 2 193 207888670 207888861 1.210000e-88 339.0
35 TraesCS3D01G068900 chr2D 97.938 194 4 0 1 194 425056713 425056520 4.360000e-88 337.0
36 TraesCS3D01G068900 chr5D 98.077 52 1 0 2637 2688 225253227 225253176 3.750000e-14 91.6
37 TraesCS3D01G068900 chr5D 96.226 53 2 0 2635 2687 322388531 322388479 4.850000e-13 87.9
38 TraesCS3D01G068900 chr2A 91.935 62 4 1 2976 3037 765872010 765872070 1.740000e-12 86.1
39 TraesCS3D01G068900 chr2A 91.803 61 4 1 2978 3038 765872009 765871950 6.270000e-12 84.2
40 TraesCS3D01G068900 chr6B 90.323 62 6 0 2638 2699 416897365 416897304 2.250000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G068900 chr3D 30292260 30302000 9740 False 17989.00 17989 100.0000 1 9741 1 chr3D.!!$F1 9740
1 TraesCS3D01G068900 chr3B 52726023 52735704 9681 True 6870.00 13459 91.8500 191 9718 2 chr3B.!!$R1 9527
2 TraesCS3D01G068900 chr3A 42023966 42034832 10866 False 3485.55 13202 92.5310 661 9741 4 chr3A.!!$F2 9080
3 TraesCS3D01G068900 chr5B 517614319 517615033 714 False 1094.00 1094 94.2820 1608 2322 1 chr5B.!!$F1 714
4 TraesCS3D01G068900 chr1B 139663611 139666004 2393 False 437.50 479 79.3965 4091 6382 2 chr1B.!!$F2 2291
5 TraesCS3D01G068900 chr1D 86919023 86921393 2370 False 435.50 492 79.3250 4091 6382 2 chr1D.!!$F1 2291

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
853 872 0.029300 CAAACGCATCCCGCCTATTG 59.971 55.0 0.00 0.0 41.76 1.90 F
1819 1928 0.106819 AGACCCAGAATGCTGCCATC 60.107 55.0 0.00 0.0 40.91 3.51 F
2729 2850 0.178068 TGGGCGCTCCTGTTATTCTC 59.822 55.0 3.94 0.0 36.20 2.87 F
2730 2851 0.533085 GGGCGCTCCTGTTATTCTCC 60.533 60.0 7.64 0.0 0.00 3.71 F
3342 3464 0.981183 TGATGTGGCGAAGTTAGGGT 59.019 50.0 0.00 0.0 0.00 4.34 F
5084 5250 2.623416 GGAGGTTATTAATGCTGGTGGC 59.377 50.0 0.00 0.0 42.22 5.01 F
5344 5514 0.892063 TGCCCAAATTAAAGGACCGC 59.108 50.0 0.00 0.0 0.00 5.68 F
7061 7459 0.752054 TTCTTTTGTGCTTGCCCCAG 59.248 50.0 0.00 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2662 2783 1.002069 TTACTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37 R
3432 3555 1.542915 ACATGCTCATTTGTGCCTGTC 59.457 47.619 8.93 0.00 38.39 3.51 R
3719 3845 2.405892 GCGTCAGCATGTTTTTGACT 57.594 45.000 14.97 0.00 44.35 3.41 R
4230 4361 3.374745 AGAATTTCACAGCACGCAAAAG 58.625 40.909 0.00 0.00 0.00 2.27 R
5195 5361 5.633830 AAAACATACCTGCAGTCTCAATG 57.366 39.130 13.81 10.53 0.00 2.82 R
7061 7459 2.224917 TGGGAAACAATGGACTGGGTAC 60.225 50.000 0.00 0.00 0.00 3.34 R
7472 7870 8.597167 TCAGAGGATATACCCTTTATGTCATTG 58.403 37.037 0.00 0.00 40.05 2.82 R
9154 9655 0.109342 CCACCAGCACTCCTTTGACT 59.891 55.000 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.861834 CGCTGTTATCGTTTTAGATGGC 58.138 45.455 0.00 0.00 32.39 4.40
22 23 3.303132 CGCTGTTATCGTTTTAGATGGCC 60.303 47.826 0.00 0.00 32.39 5.36
23 24 3.877508 GCTGTTATCGTTTTAGATGGCCT 59.122 43.478 3.32 0.00 32.39 5.19
24 25 4.335594 GCTGTTATCGTTTTAGATGGCCTT 59.664 41.667 3.32 0.00 32.39 4.35
25 26 5.526111 GCTGTTATCGTTTTAGATGGCCTTA 59.474 40.000 3.32 0.00 32.39 2.69
26 27 6.037830 GCTGTTATCGTTTTAGATGGCCTTAA 59.962 38.462 3.32 0.00 32.39 1.85
27 28 7.548196 TGTTATCGTTTTAGATGGCCTTAAG 57.452 36.000 3.32 0.00 32.39 1.85
28 29 6.037830 TGTTATCGTTTTAGATGGCCTTAAGC 59.962 38.462 3.32 0.00 34.76 3.09
43 44 6.884280 GCCTTAAGCCATATTTGTCATACT 57.116 37.500 0.00 0.00 34.35 2.12
44 45 7.277174 GCCTTAAGCCATATTTGTCATACTT 57.723 36.000 0.00 0.00 34.35 2.24
45 46 8.391075 GCCTTAAGCCATATTTGTCATACTTA 57.609 34.615 0.00 0.00 34.35 2.24
46 47 9.014297 GCCTTAAGCCATATTTGTCATACTTAT 57.986 33.333 0.00 0.00 34.35 1.73
74 75 9.780186 TCTCTCTTGAGATACTCGATGTAATAA 57.220 33.333 0.41 0.00 43.73 1.40
76 77 9.562408 TCTCTTGAGATACTCGATGTAATAAGT 57.438 33.333 0.00 0.00 34.45 2.24
77 78 9.605955 CTCTTGAGATACTCGATGTAATAAGTG 57.394 37.037 0.00 0.00 34.45 3.16
78 79 9.121658 TCTTGAGATACTCGATGTAATAAGTGT 57.878 33.333 0.00 0.00 34.45 3.55
79 80 9.175060 CTTGAGATACTCGATGTAATAAGTGTG 57.825 37.037 0.00 0.00 34.45 3.82
80 81 8.221965 TGAGATACTCGATGTAATAAGTGTGT 57.778 34.615 0.00 0.00 34.45 3.72
81 82 8.129211 TGAGATACTCGATGTAATAAGTGTGTG 58.871 37.037 0.00 0.00 34.45 3.82
82 83 8.221965 AGATACTCGATGTAATAAGTGTGTGA 57.778 34.615 0.00 0.00 34.45 3.58
83 84 8.851145 AGATACTCGATGTAATAAGTGTGTGAT 58.149 33.333 0.00 0.00 34.45 3.06
84 85 9.464714 GATACTCGATGTAATAAGTGTGTGATT 57.535 33.333 0.00 0.00 34.45 2.57
85 86 7.525688 ACTCGATGTAATAAGTGTGTGATTG 57.474 36.000 0.00 0.00 0.00 2.67
86 87 6.535150 ACTCGATGTAATAAGTGTGTGATTGG 59.465 38.462 0.00 0.00 0.00 3.16
87 88 6.403049 TCGATGTAATAAGTGTGTGATTGGT 58.597 36.000 0.00 0.00 0.00 3.67
88 89 7.548967 TCGATGTAATAAGTGTGTGATTGGTA 58.451 34.615 0.00 0.00 0.00 3.25
89 90 7.490079 TCGATGTAATAAGTGTGTGATTGGTAC 59.510 37.037 0.00 0.00 0.00 3.34
90 91 7.491372 CGATGTAATAAGTGTGTGATTGGTACT 59.509 37.037 0.00 0.00 0.00 2.73
91 92 8.718102 ATGTAATAAGTGTGTGATTGGTACTC 57.282 34.615 0.00 0.00 0.00 2.59
92 93 7.903145 TGTAATAAGTGTGTGATTGGTACTCT 58.097 34.615 0.00 0.00 0.00 3.24
93 94 7.817478 TGTAATAAGTGTGTGATTGGTACTCTG 59.183 37.037 0.00 0.00 0.00 3.35
94 95 4.689612 AAGTGTGTGATTGGTACTCTGT 57.310 40.909 0.00 0.00 0.00 3.41
95 96 4.689612 AGTGTGTGATTGGTACTCTGTT 57.310 40.909 0.00 0.00 0.00 3.16
96 97 5.801531 AGTGTGTGATTGGTACTCTGTTA 57.198 39.130 0.00 0.00 0.00 2.41
97 98 6.360370 AGTGTGTGATTGGTACTCTGTTAT 57.640 37.500 0.00 0.00 0.00 1.89
98 99 7.476540 AGTGTGTGATTGGTACTCTGTTATA 57.523 36.000 0.00 0.00 0.00 0.98
99 100 7.903145 AGTGTGTGATTGGTACTCTGTTATAA 58.097 34.615 0.00 0.00 0.00 0.98
100 101 8.372459 AGTGTGTGATTGGTACTCTGTTATAAA 58.628 33.333 0.00 0.00 0.00 1.40
101 102 9.162764 GTGTGTGATTGGTACTCTGTTATAAAT 57.837 33.333 0.00 0.00 0.00 1.40
102 103 9.378551 TGTGTGATTGGTACTCTGTTATAAATC 57.621 33.333 0.00 0.00 0.00 2.17
103 104 8.827677 GTGTGATTGGTACTCTGTTATAAATCC 58.172 37.037 0.00 0.00 0.00 3.01
104 105 8.768397 TGTGATTGGTACTCTGTTATAAATCCT 58.232 33.333 0.00 0.00 0.00 3.24
105 106 9.614792 GTGATTGGTACTCTGTTATAAATCCTT 57.385 33.333 0.00 0.00 0.00 3.36
106 107 9.832445 TGATTGGTACTCTGTTATAAATCCTTC 57.168 33.333 0.00 0.00 0.00 3.46
107 108 9.832445 GATTGGTACTCTGTTATAAATCCTTCA 57.168 33.333 0.00 0.00 0.00 3.02
109 110 9.667107 TTGGTACTCTGTTATAAATCCTTCAAG 57.333 33.333 0.00 0.00 0.00 3.02
110 111 8.822805 TGGTACTCTGTTATAAATCCTTCAAGT 58.177 33.333 0.00 0.00 0.00 3.16
114 115 9.877178 ACTCTGTTATAAATCCTTCAAGTACTG 57.123 33.333 0.00 0.00 0.00 2.74
115 116 9.877178 CTCTGTTATAAATCCTTCAAGTACTGT 57.123 33.333 0.00 0.00 0.00 3.55
116 117 9.653287 TCTGTTATAAATCCTTCAAGTACTGTG 57.347 33.333 0.00 0.00 0.00 3.66
117 118 8.263940 TGTTATAAATCCTTCAAGTACTGTGC 57.736 34.615 0.00 0.00 0.00 4.57
118 119 7.064134 TGTTATAAATCCTTCAAGTACTGTGCG 59.936 37.037 0.00 0.00 0.00 5.34
119 120 3.402628 AATCCTTCAAGTACTGTGCGT 57.597 42.857 0.00 0.00 0.00 5.24
120 121 2.148916 TCCTTCAAGTACTGTGCGTG 57.851 50.000 5.54 5.54 0.00 5.34
121 122 1.411246 TCCTTCAAGTACTGTGCGTGT 59.589 47.619 10.96 0.00 0.00 4.49
122 123 1.792949 CCTTCAAGTACTGTGCGTGTC 59.207 52.381 10.96 0.00 0.00 3.67
123 124 2.469826 CTTCAAGTACTGTGCGTGTCA 58.530 47.619 10.96 0.48 0.00 3.58
124 125 2.134201 TCAAGTACTGTGCGTGTCAG 57.866 50.000 10.96 0.00 38.68 3.51
125 126 0.508641 CAAGTACTGTGCGTGTCAGC 59.491 55.000 0.00 0.00 36.50 4.26
126 127 0.104120 AAGTACTGTGCGTGTCAGCA 59.896 50.000 0.00 0.00 45.96 4.41
143 144 3.784511 AGCATTACTGATCCAGGGATG 57.215 47.619 5.35 0.00 35.51 3.51
144 145 3.321039 AGCATTACTGATCCAGGGATGA 58.679 45.455 5.35 0.00 35.51 2.92
145 146 3.072184 AGCATTACTGATCCAGGGATGAC 59.928 47.826 5.35 0.00 35.51 3.06
146 147 3.181451 GCATTACTGATCCAGGGATGACA 60.181 47.826 5.35 0.00 35.51 3.58
147 148 4.384056 CATTACTGATCCAGGGATGACAC 58.616 47.826 5.35 0.00 35.51 3.67
148 149 2.260639 ACTGATCCAGGGATGACACT 57.739 50.000 5.35 0.00 35.51 3.55
149 150 1.836166 ACTGATCCAGGGATGACACTG 59.164 52.381 5.35 0.00 46.15 3.66
153 154 4.308526 CAGGGATGACACTGGTGC 57.691 61.111 0.17 0.00 43.19 5.01
154 155 1.376086 CAGGGATGACACTGGTGCA 59.624 57.895 0.17 1.12 43.19 4.57
155 156 0.957395 CAGGGATGACACTGGTGCAC 60.957 60.000 8.80 8.80 43.19 4.57
156 157 2.034879 GGGATGACACTGGTGCACG 61.035 63.158 11.45 0.00 0.00 5.34
157 158 2.034879 GGATGACACTGGTGCACGG 61.035 63.158 11.45 8.81 0.00 4.94
158 159 1.301716 GATGACACTGGTGCACGGT 60.302 57.895 11.45 9.50 40.00 4.83
159 160 0.037697 GATGACACTGGTGCACGGTA 60.038 55.000 11.45 0.00 36.76 4.02
160 161 0.037326 ATGACACTGGTGCACGGTAG 60.037 55.000 11.45 11.43 36.76 3.18
161 162 1.110518 TGACACTGGTGCACGGTAGA 61.111 55.000 11.45 0.00 36.76 2.59
162 163 0.246635 GACACTGGTGCACGGTAGAT 59.753 55.000 11.45 3.62 36.76 1.98
163 164 0.246635 ACACTGGTGCACGGTAGATC 59.753 55.000 11.45 0.00 36.76 2.75
164 165 0.246360 CACTGGTGCACGGTAGATCA 59.754 55.000 11.45 0.00 36.76 2.92
165 166 0.532573 ACTGGTGCACGGTAGATCAG 59.467 55.000 11.45 12.61 36.76 2.90
166 167 0.817654 CTGGTGCACGGTAGATCAGA 59.182 55.000 11.45 0.00 0.00 3.27
167 168 0.530744 TGGTGCACGGTAGATCAGAC 59.469 55.000 11.45 0.00 0.00 3.51
168 169 0.818296 GGTGCACGGTAGATCAGACT 59.182 55.000 11.45 0.00 0.00 3.24
169 170 1.469940 GGTGCACGGTAGATCAGACTG 60.470 57.143 11.45 0.00 0.00 3.51
170 171 1.202582 GTGCACGGTAGATCAGACTGT 59.797 52.381 0.00 6.46 36.85 3.55
171 172 1.893137 TGCACGGTAGATCAGACTGTT 59.107 47.619 9.02 0.00 34.08 3.16
172 173 2.299013 TGCACGGTAGATCAGACTGTTT 59.701 45.455 9.02 0.00 34.08 2.83
173 174 2.668457 GCACGGTAGATCAGACTGTTTG 59.332 50.000 9.02 0.00 34.08 2.93
174 175 3.614150 GCACGGTAGATCAGACTGTTTGA 60.614 47.826 3.32 3.32 34.08 2.69
175 176 4.169508 CACGGTAGATCAGACTGTTTGAG 58.830 47.826 7.14 0.00 34.08 3.02
176 177 3.193691 ACGGTAGATCAGACTGTTTGAGG 59.806 47.826 7.14 0.00 32.32 3.86
177 178 3.193691 CGGTAGATCAGACTGTTTGAGGT 59.806 47.826 7.14 0.00 0.00 3.85
178 179 4.675671 CGGTAGATCAGACTGTTTGAGGTC 60.676 50.000 7.14 1.18 0.00 3.85
179 180 4.464597 GGTAGATCAGACTGTTTGAGGTCT 59.535 45.833 7.14 8.09 42.67 3.85
183 184 3.007398 ATCAGACTGTTTGAGGTCTGGTC 59.993 47.826 18.73 0.00 46.93 4.02
184 185 1.341531 AGACTGTTTGAGGTCTGGTCG 59.658 52.381 0.00 0.00 40.71 4.79
185 186 0.249911 ACTGTTTGAGGTCTGGTCGC 60.250 55.000 0.00 0.00 0.00 5.19
186 187 0.034059 CTGTTTGAGGTCTGGTCGCT 59.966 55.000 0.00 0.00 0.00 4.93
187 188 1.272490 CTGTTTGAGGTCTGGTCGCTA 59.728 52.381 0.00 0.00 0.00 4.26
188 189 1.000506 TGTTTGAGGTCTGGTCGCTAC 59.999 52.381 0.00 0.00 0.00 3.58
189 190 1.000506 GTTTGAGGTCTGGTCGCTACA 59.999 52.381 0.00 0.00 0.00 2.74
195 196 0.171455 GTCTGGTCGCTACACTCAGG 59.829 60.000 0.00 0.00 0.00 3.86
203 204 0.394565 GCTACACTCAGGCATAGGGG 59.605 60.000 0.00 0.00 0.00 4.79
211 212 2.440247 GGCATAGGGGTGTGTGGC 60.440 66.667 0.00 0.00 0.00 5.01
235 237 2.044946 ACAGAGCCCCGGATTTGC 60.045 61.111 0.73 0.00 0.00 3.68
285 287 4.927782 TGCCTTGCTGCGACCGTT 62.928 61.111 0.00 0.00 0.00 4.44
324 326 2.588877 CGCAAGCATCGGGGTAGG 60.589 66.667 0.00 0.00 0.00 3.18
326 328 2.203209 CAAGCATCGGGGTAGGCC 60.203 66.667 0.00 0.00 0.00 5.19
346 348 2.009774 CGGCCAGTACTTTGGATCAAG 58.990 52.381 2.24 0.00 40.87 3.02
397 403 2.274104 GTGTGTGGTGGTGGTGGT 59.726 61.111 0.00 0.00 0.00 4.16
403 409 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
406 412 4.596585 GGTGGTGGTGGTGGTGGG 62.597 72.222 0.00 0.00 0.00 4.61
407 413 3.816090 GTGGTGGTGGTGGTGGGT 61.816 66.667 0.00 0.00 0.00 4.51
427 433 7.014905 GGTGGGTGGTTTCTTCTATTTACTTTT 59.985 37.037 0.00 0.00 0.00 2.27
748 756 2.414768 CGAACGTTCGCCAGATAAAC 57.585 50.000 34.54 1.37 44.26 2.01
750 758 2.471749 CGAACGTTCGCCAGATAAACAC 60.472 50.000 34.54 0.70 44.26 3.32
751 759 1.065358 ACGTTCGCCAGATAAACACG 58.935 50.000 0.00 0.00 33.35 4.49
752 760 1.065358 CGTTCGCCAGATAAACACGT 58.935 50.000 0.00 0.00 0.00 4.49
853 872 0.029300 CAAACGCATCCCGCCTATTG 59.971 55.000 0.00 0.00 41.76 1.90
876 895 0.610785 GGGAACGGGCTTCATTTCCA 60.611 55.000 0.00 0.00 39.53 3.53
877 896 0.811281 GGAACGGGCTTCATTTCCAG 59.189 55.000 0.00 0.00 37.94 3.86
879 898 1.250840 AACGGGCTTCATTTCCAGGC 61.251 55.000 0.00 0.00 34.83 4.85
880 899 1.678635 CGGGCTTCATTTCCAGGCA 60.679 57.895 0.00 0.00 37.32 4.75
897 917 4.160252 CCAGGCACCACATAAATAAAAGCT 59.840 41.667 0.00 0.00 0.00 3.74
909 929 5.977489 AAATAAAAGCTAACACCACTCCC 57.023 39.130 0.00 0.00 0.00 4.30
988 1017 3.420482 CCTAACCCCAGCCCCCAG 61.420 72.222 0.00 0.00 0.00 4.45
1239 1325 4.192000 GACGAGGACGACGAGGTA 57.808 61.111 0.00 0.00 42.66 3.08
1273 1367 1.653151 GGTCTGGGTGCTCGATTTAC 58.347 55.000 0.00 0.00 0.00 2.01
1283 1377 2.039216 TGCTCGATTTACAGGGTTTCCA 59.961 45.455 0.00 0.00 34.83 3.53
1285 1379 3.065371 GCTCGATTTACAGGGTTTCCATG 59.935 47.826 0.00 0.00 34.83 3.66
1286 1380 4.513442 CTCGATTTACAGGGTTTCCATGA 58.487 43.478 7.43 0.00 34.83 3.07
1287 1381 5.110814 TCGATTTACAGGGTTTCCATGAT 57.889 39.130 7.43 0.00 34.83 2.45
1288 1382 6.241882 TCGATTTACAGGGTTTCCATGATA 57.758 37.500 7.43 0.00 34.83 2.15
1289 1383 6.654959 TCGATTTACAGGGTTTCCATGATAA 58.345 36.000 7.43 1.93 34.83 1.75
1290 1384 7.287061 TCGATTTACAGGGTTTCCATGATAAT 58.713 34.615 7.43 6.11 34.83 1.28
1292 1386 9.062524 CGATTTACAGGGTTTCCATGATAATTA 57.937 33.333 7.43 0.00 34.83 1.40
1442 1542 7.782897 TCATAAATAGGAGCAGCAGTAGTAT 57.217 36.000 0.00 0.00 0.00 2.12
1443 1543 8.195165 TCATAAATAGGAGCAGCAGTAGTATT 57.805 34.615 0.00 0.00 0.00 1.89
1517 1620 7.420800 ACTGAAATGAAGCTACTGTTTTGAAG 58.579 34.615 0.00 0.00 0.00 3.02
1536 1640 2.242043 AGAAGTGGCCCTTTTCATGTG 58.758 47.619 0.00 0.00 32.03 3.21
1538 1642 1.331214 AGTGGCCCTTTTCATGTGTG 58.669 50.000 0.00 0.00 0.00 3.82
1552 1661 2.137129 TGTGTGACAATGCAATGCAC 57.863 45.000 11.23 17.20 43.04 4.57
1576 1685 2.675348 GTTGTCTAGATGCTTGCAGTCC 59.325 50.000 0.00 0.00 0.00 3.85
1636 1745 1.269726 CCGCAATGGTGTTTGAGCTTT 60.270 47.619 0.00 0.00 0.00 3.51
1819 1928 0.106819 AGACCCAGAATGCTGCCATC 60.107 55.000 0.00 0.00 40.91 3.51
1820 1929 0.394762 GACCCAGAATGCTGCCATCA 60.395 55.000 0.00 0.00 40.91 3.07
1846 1955 3.476552 TGACATGGTGTGTTTCTCCTTC 58.523 45.455 0.00 0.00 42.36 3.46
1890 2001 5.680594 AATGCCCTTCTGCAATTGATTTA 57.319 34.783 10.34 0.00 45.84 1.40
1918 2029 2.777845 GTGCGCATTTGATACACATTCG 59.222 45.455 15.91 0.00 0.00 3.34
2081 2192 6.208599 TGGAAGGTGATTCTTGGTTATGTTTC 59.791 38.462 0.00 0.00 38.07 2.78
2086 2197 8.143835 AGGTGATTCTTGGTTATGTTTCTTTTG 58.856 33.333 0.00 0.00 0.00 2.44
2200 2311 4.963953 GCACCGATCTAATTTGAAACATCG 59.036 41.667 4.36 4.36 34.31 3.84
2255 2367 5.888161 ACTACTTCTATTTGCATTCCCCAAG 59.112 40.000 0.00 0.00 0.00 3.61
2397 2512 1.264749 TAGCCCTACTGCACTGGTGG 61.265 60.000 2.84 0.00 0.00 4.61
2465 2580 2.028839 CACACACGGTACAGGGTCAATA 60.029 50.000 0.00 0.00 0.00 1.90
2580 2701 7.687941 TCTTGTGAGGGAATTCATTTACTTC 57.312 36.000 7.93 0.00 0.00 3.01
2604 2725 6.816640 TCTTATTTGTATTTCTAGCTGTGCGT 59.183 34.615 0.00 0.00 0.00 5.24
2624 2745 8.447833 TGTGCGTTTATTTTGGATTCTAAGTAG 58.552 33.333 0.00 0.00 0.00 2.57
2636 2757 9.886132 TTGGATTCTAAGTAGACCTGTTAATTC 57.114 33.333 0.00 0.00 30.81 2.17
2642 2763 9.750783 TCTAAGTAGACCTGTTAATTCTAGTGT 57.249 33.333 0.00 0.00 0.00 3.55
2644 2765 8.418597 AAGTAGACCTGTTAATTCTAGTGTCA 57.581 34.615 0.00 0.00 0.00 3.58
2645 2766 8.418597 AGTAGACCTGTTAATTCTAGTGTCAA 57.581 34.615 0.00 0.00 0.00 3.18
2647 2768 9.485206 GTAGACCTGTTAATTCTAGTGTCAAAA 57.515 33.333 0.00 0.00 0.00 2.44
2648 2769 8.974060 AGACCTGTTAATTCTAGTGTCAAAAA 57.026 30.769 0.00 0.00 0.00 1.94
2649 2770 8.837389 AGACCTGTTAATTCTAGTGTCAAAAAC 58.163 33.333 0.00 0.00 0.00 2.43
2650 2771 7.636326 ACCTGTTAATTCTAGTGTCAAAAACG 58.364 34.615 0.00 0.00 0.00 3.60
2651 2772 6.577427 CCTGTTAATTCTAGTGTCAAAAACGC 59.423 38.462 0.00 0.00 38.74 4.84
2653 2774 7.349711 TGTTAATTCTAGTGTCAAAAACGCTC 58.650 34.615 0.00 0.00 45.69 5.03
2657 2778 7.907214 ATTCTAGTGTCAAAAACGCTCTTAT 57.093 32.000 0.00 0.00 45.69 1.73
2658 2779 8.997621 ATTCTAGTGTCAAAAACGCTCTTATA 57.002 30.769 0.00 0.00 45.69 0.98
2659 2780 8.997621 TTCTAGTGTCAAAAACGCTCTTATAT 57.002 30.769 0.00 0.00 45.69 0.86
2660 2781 8.997621 TCTAGTGTCAAAAACGCTCTTATATT 57.002 30.769 0.00 0.00 45.69 1.28
2664 2785 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
2665 2786 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
2666 2787 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
2667 2788 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
2668 2789 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
2669 2790 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
2670 2791 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
2671 2792 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
2672 2793 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
2673 2794 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2674 2795 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
2675 2796 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2729 2850 0.178068 TGGGCGCTCCTGTTATTCTC 59.822 55.000 3.94 0.00 36.20 2.87
2730 2851 0.533085 GGGCGCTCCTGTTATTCTCC 60.533 60.000 7.64 0.00 0.00 3.71
2772 2893 6.582929 AGCCCATTTACTTCTAGATTCCTT 57.417 37.500 0.00 0.00 0.00 3.36
2806 2927 6.266558 TGTTCTATTTGTTGCTAATGTGGGTT 59.733 34.615 0.00 0.00 0.00 4.11
2996 3117 9.787435 ATTACACTTCACTTCACCTTAATAACA 57.213 29.630 0.00 0.00 0.00 2.41
2998 3119 8.154649 ACACTTCACTTCACCTTAATAACAAG 57.845 34.615 0.00 0.00 0.00 3.16
3295 3417 8.718734 CACTTTTAAGAGACCTTTATGTACCAC 58.281 37.037 0.00 0.00 33.94 4.16
3312 3434 4.075963 ACCACGCCAACTAGAACTTTAA 57.924 40.909 0.00 0.00 0.00 1.52
3342 3464 0.981183 TGATGTGGCGAAGTTAGGGT 59.019 50.000 0.00 0.00 0.00 4.34
3432 3555 8.424274 TTGTAGCAATCTATGTATTCACTGTG 57.576 34.615 0.17 0.17 0.00 3.66
3496 3619 4.026356 AGCAACTTAGCCTGTTGATTCT 57.974 40.909 15.30 3.66 45.27 2.40
3741 3867 3.753272 AGTCAAAAACATGCTGACGCTAT 59.247 39.130 10.43 0.00 43.41 2.97
4069 4195 6.734137 TGTTCAATGCAAGTTACTAACCTTG 58.266 36.000 0.00 0.00 0.00 3.61
4072 4198 6.296026 TCAATGCAAGTTACTAACCTTGTCT 58.704 36.000 0.00 0.00 0.00 3.41
4075 4201 7.582667 ATGCAAGTTACTAACCTTGTCTTTT 57.417 32.000 0.00 0.00 0.00 2.27
4077 4203 8.508883 TGCAAGTTACTAACCTTGTCTTTTTA 57.491 30.769 0.00 0.00 0.00 1.52
4230 4361 2.812358 AATTGCTCGTTTTTGTCCCC 57.188 45.000 0.00 0.00 0.00 4.81
4295 4426 4.112634 TGGTCTTACATCCCTGCTTTTT 57.887 40.909 0.00 0.00 0.00 1.94
5084 5250 2.623416 GGAGGTTATTAATGCTGGTGGC 59.377 50.000 0.00 0.00 42.22 5.01
5344 5514 0.892063 TGCCCAAATTAAAGGACCGC 59.108 50.000 0.00 0.00 0.00 5.68
5751 6080 6.747414 ATGATAGTGATTGGTAAGCTGGTA 57.253 37.500 0.00 0.00 0.00 3.25
6689 7083 4.846168 TGGGGTGTTGCATTATGTACTA 57.154 40.909 0.00 0.00 0.00 1.82
6903 7300 2.680805 GCTTGGTATTGCCTGCTCACTA 60.681 50.000 0.00 0.00 38.35 2.74
6988 7385 2.171870 TGAAAAGGAAGTCCGACACCTT 59.828 45.455 18.29 18.29 43.40 3.50
7061 7459 0.752054 TTCTTTTGTGCTTGCCCCAG 59.248 50.000 0.00 0.00 0.00 4.45
7472 7870 2.613595 TGCATGTGAGAAATATGGTCGC 59.386 45.455 0.00 0.00 0.00 5.19
7743 8141 5.582665 GTGTTTGTCCCTGTCTAATCAGATC 59.417 44.000 0.00 0.00 37.61 2.75
7775 8173 5.652994 TTATCAAAAACATCGAAAGGGGG 57.347 39.130 0.00 0.00 0.00 5.40
7814 8212 4.132336 GCAAGGATGAGATTATGACAGCA 58.868 43.478 0.00 0.00 0.00 4.41
7946 8344 3.265479 GCCCTCTCCCTTCTAATGCATAT 59.735 47.826 0.00 0.00 0.00 1.78
7947 8345 4.841422 CCCTCTCCCTTCTAATGCATATG 58.159 47.826 0.00 0.00 0.00 1.78
7984 8382 5.106197 TGACATGATCATAACAACAACCTGC 60.106 40.000 8.15 0.00 29.99 4.85
8156 8554 3.056749 TCCGCCTAGTTGAGAAAGAGAAC 60.057 47.826 0.00 0.00 0.00 3.01
8231 8629 7.955864 GCTAAGGTAGTTTCTTATTGTTGAACG 59.044 37.037 0.00 0.00 0.00 3.95
8232 8630 7.797038 AAGGTAGTTTCTTATTGTTGAACGT 57.203 32.000 0.00 0.00 0.00 3.99
8233 8631 7.417496 AGGTAGTTTCTTATTGTTGAACGTC 57.583 36.000 0.00 0.00 0.00 4.34
8234 8632 6.426025 AGGTAGTTTCTTATTGTTGAACGTCC 59.574 38.462 0.00 0.00 0.00 4.79
8235 8633 6.426025 GGTAGTTTCTTATTGTTGAACGTCCT 59.574 38.462 0.00 0.00 0.00 3.85
8236 8634 6.300354 AGTTTCTTATTGTTGAACGTCCTG 57.700 37.500 0.00 0.00 0.00 3.86
8237 8635 5.238650 AGTTTCTTATTGTTGAACGTCCTGG 59.761 40.000 0.00 0.00 0.00 4.45
8275 8679 8.630278 TCTTCTTACGACATTACTAATCTTGC 57.370 34.615 0.00 0.00 0.00 4.01
8307 8716 2.636647 TGCAGAAGATGACACCAACA 57.363 45.000 0.00 0.00 0.00 3.33
8371 8801 0.319405 GCAAGCTGCATCAAGGGTTT 59.681 50.000 1.02 0.00 44.26 3.27
8424 8854 5.548406 TCCAAGAAGGTAGCAGTTTCTTAC 58.452 41.667 7.17 0.00 38.68 2.34
8457 8890 6.135290 TCACTGGTCTTGATTTTGTTCTTG 57.865 37.500 0.00 0.00 0.00 3.02
8484 8917 7.171508 TGACATTACTAATCTTGGCGATCATTC 59.828 37.037 0.00 0.00 0.00 2.67
8561 8994 3.749064 GTGAGACGGCTCCAGCGA 61.749 66.667 17.58 0.00 43.26 4.93
8649 9087 1.032014 TTTTTGCCAGTCAGTCCAGC 58.968 50.000 0.00 0.00 0.00 4.85
8650 9088 0.106769 TTTTGCCAGTCAGTCCAGCA 60.107 50.000 0.00 0.00 0.00 4.41
8651 9089 0.819259 TTTGCCAGTCAGTCCAGCAC 60.819 55.000 0.00 0.00 32.18 4.40
8652 9090 1.981951 TTGCCAGTCAGTCCAGCACA 61.982 55.000 0.00 0.00 32.18 4.57
8690 9128 4.898265 AGATGATTCTCCTGCTGCTTACTA 59.102 41.667 0.00 0.00 0.00 1.82
8714 9152 4.156739 ACCTAGCTAAGCTGAAAACAATGC 59.843 41.667 0.00 0.00 40.10 3.56
8803 9244 2.873288 GGCTTCTTCCAGCGCTTG 59.127 61.111 7.50 3.96 41.12 4.01
8811 9252 3.130160 CCAGCGCTTGAAGCCTCC 61.130 66.667 7.50 0.25 38.18 4.30
8844 9285 8.972127 AGTGTAATATATATGCTCAACGGATCT 58.028 33.333 0.00 0.00 0.00 2.75
8883 9325 6.017440 TCACTGTCCAAGTAAGTTTAATGCAC 60.017 38.462 0.00 0.00 36.83 4.57
8929 9376 2.083774 TGCATCAGGATCGGTTTGAAC 58.916 47.619 0.00 0.00 0.00 3.18
8985 9432 3.065233 GCATGAAGATGGTATGCAAACGA 59.935 43.478 0.00 0.00 44.88 3.85
9007 9454 8.845942 ACGACTACAAAAATGGTTTTAGAAAC 57.154 30.769 0.00 0.00 35.12 2.78
9010 9457 8.845942 ACTACAAAAATGGTTTTAGAAACGAC 57.154 30.769 0.00 0.00 35.12 4.34
9107 9577 2.933906 CCATTGCATTTCCATGTTCAGC 59.066 45.455 0.00 0.00 32.28 4.26
9155 9656 4.853507 TCGCGACGACCTTGTTAG 57.146 55.556 3.71 0.00 0.00 2.34
9177 9678 2.983725 AAAGGAGTGCTGGTGGTGCC 62.984 60.000 0.00 0.00 37.90 5.01
9204 9705 3.948719 GGTGAGGGCGTGGTGGAA 61.949 66.667 0.00 0.00 0.00 3.53
9205 9706 2.351276 GTGAGGGCGTGGTGGAAT 59.649 61.111 0.00 0.00 0.00 3.01
9206 9707 1.600107 GTGAGGGCGTGGTGGAATA 59.400 57.895 0.00 0.00 0.00 1.75
9207 9708 0.180406 GTGAGGGCGTGGTGGAATAT 59.820 55.000 0.00 0.00 0.00 1.28
9208 9709 0.468226 TGAGGGCGTGGTGGAATATC 59.532 55.000 0.00 0.00 0.00 1.63
9209 9710 0.250338 GAGGGCGTGGTGGAATATCC 60.250 60.000 0.00 0.00 36.96 2.59
9210 9711 1.228154 GGGCGTGGTGGAATATCCC 60.228 63.158 0.00 0.00 35.03 3.85
9211 9712 1.228154 GGCGTGGTGGAATATCCCC 60.228 63.158 0.00 0.00 35.03 4.81
9212 9713 1.705997 GGCGTGGTGGAATATCCCCT 61.706 60.000 0.00 0.00 35.03 4.79
9213 9714 0.250338 GCGTGGTGGAATATCCCCTC 60.250 60.000 0.00 0.00 35.03 4.30
9214 9715 0.033504 CGTGGTGGAATATCCCCTCG 59.966 60.000 11.28 11.28 37.44 4.63
9215 9716 0.250338 GTGGTGGAATATCCCCTCGC 60.250 60.000 0.00 0.00 35.03 5.03
9216 9717 1.375326 GGTGGAATATCCCCTCGCC 59.625 63.158 0.00 0.00 35.03 5.54
9217 9718 1.004918 GTGGAATATCCCCTCGCCG 60.005 63.158 0.00 0.00 35.03 6.46
9218 9719 2.214216 TGGAATATCCCCTCGCCGG 61.214 63.158 0.00 0.00 35.03 6.13
9219 9720 2.047179 GAATATCCCCTCGCCGGC 60.047 66.667 19.07 19.07 0.00 6.13
9220 9721 2.847234 AATATCCCCTCGCCGGCA 60.847 61.111 28.98 12.94 0.00 5.69
9221 9722 2.788191 GAATATCCCCTCGCCGGCAG 62.788 65.000 28.98 21.57 0.00 4.85
9258 9759 1.763968 GGGGGTTCATTAGACTTGGC 58.236 55.000 0.00 0.00 0.00 4.52
9261 9762 2.369394 GGGTTCATTAGACTTGGCAGG 58.631 52.381 0.00 0.00 0.00 4.85
9262 9763 2.290960 GGGTTCATTAGACTTGGCAGGT 60.291 50.000 0.23 0.23 0.00 4.00
9278 9779 4.518970 TGGCAGGTTCAGTTACATTTTCTC 59.481 41.667 0.00 0.00 0.00 2.87
9283 9784 7.491048 GCAGGTTCAGTTACATTTTCTCAAAAA 59.509 33.333 0.00 0.00 38.66 1.94
9360 9873 1.270094 TGCTCAACGGTAGTGGACTTG 60.270 52.381 0.00 0.00 0.00 3.16
9394 9909 2.880890 CCCTCTCGCCCATTTTTCATAG 59.119 50.000 0.00 0.00 0.00 2.23
9458 9973 4.552674 AGTGTGGGATTTTGTACCCTTTT 58.447 39.130 0.00 0.00 45.74 2.27
9519 10078 9.119329 GTATACGTAGATGATGTGATTGTCTTC 57.881 37.037 0.08 0.00 0.00 2.87
9545 10104 5.981088 ATAGCCAAACACAATGATGTTGA 57.019 34.783 2.89 0.00 42.01 3.18
9603 12050 1.801025 CGGGTTTGAAGTGCAACCAAC 60.801 52.381 5.41 1.36 37.80 3.77
9628 12075 5.295045 GCAAAAATGCTCTATTTCCCCAATG 59.705 40.000 0.00 0.00 38.01 2.82
9660 12107 3.209410 AGGATCTGATTGGTGAATTCGC 58.791 45.455 10.64 10.64 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.303132 GGCCATCTAAAACGATAACAGCG 60.303 47.826 0.00 0.00 0.00 5.18
1 2 3.877508 AGGCCATCTAAAACGATAACAGC 59.122 43.478 5.01 0.00 0.00 4.40
2 3 7.548196 TTAAGGCCATCTAAAACGATAACAG 57.452 36.000 5.01 0.00 0.00 3.16
3 4 6.037830 GCTTAAGGCCATCTAAAACGATAACA 59.962 38.462 5.01 0.00 34.27 2.41
4 5 6.427974 GCTTAAGGCCATCTAAAACGATAAC 58.572 40.000 5.01 0.00 34.27 1.89
5 6 6.613755 GCTTAAGGCCATCTAAAACGATAA 57.386 37.500 5.01 0.00 34.27 1.75
20 21 6.884280 AGTATGACAAATATGGCTTAAGGC 57.116 37.500 21.52 21.52 34.75 4.35
50 51 9.562408 ACTTATTACATCGAGTATCTCAAGAGA 57.438 33.333 1.74 1.74 42.37 3.10
51 52 9.605955 CACTTATTACATCGAGTATCTCAAGAG 57.394 37.037 0.00 0.00 31.53 2.85
52 53 9.121658 ACACTTATTACATCGAGTATCTCAAGA 57.878 33.333 0.00 0.00 31.53 3.02
53 54 9.175060 CACACTTATTACATCGAGTATCTCAAG 57.825 37.037 0.00 0.00 31.53 3.02
54 55 8.683615 ACACACTTATTACATCGAGTATCTCAA 58.316 33.333 0.00 0.00 31.53 3.02
55 56 8.129211 CACACACTTATTACATCGAGTATCTCA 58.871 37.037 0.00 0.00 31.53 3.27
56 57 8.343366 TCACACACTTATTACATCGAGTATCTC 58.657 37.037 0.00 0.00 31.53 2.75
57 58 8.221965 TCACACACTTATTACATCGAGTATCT 57.778 34.615 0.00 0.00 31.53 1.98
58 59 9.464714 AATCACACACTTATTACATCGAGTATC 57.535 33.333 0.00 0.00 31.53 2.24
59 60 9.249457 CAATCACACACTTATTACATCGAGTAT 57.751 33.333 0.00 0.00 31.53 2.12
60 61 7.704899 CCAATCACACACTTATTACATCGAGTA 59.295 37.037 0.00 0.00 0.00 2.59
61 62 6.535150 CCAATCACACACTTATTACATCGAGT 59.465 38.462 0.00 0.00 0.00 4.18
62 63 6.535150 ACCAATCACACACTTATTACATCGAG 59.465 38.462 0.00 0.00 0.00 4.04
63 64 6.403049 ACCAATCACACACTTATTACATCGA 58.597 36.000 0.00 0.00 0.00 3.59
64 65 6.662414 ACCAATCACACACTTATTACATCG 57.338 37.500 0.00 0.00 0.00 3.84
65 66 8.718102 AGTACCAATCACACACTTATTACATC 57.282 34.615 0.00 0.00 0.00 3.06
66 67 8.540388 AGAGTACCAATCACACACTTATTACAT 58.460 33.333 0.00 0.00 0.00 2.29
67 68 7.817478 CAGAGTACCAATCACACACTTATTACA 59.183 37.037 0.00 0.00 0.00 2.41
68 69 7.817962 ACAGAGTACCAATCACACACTTATTAC 59.182 37.037 0.00 0.00 0.00 1.89
69 70 7.903145 ACAGAGTACCAATCACACACTTATTA 58.097 34.615 0.00 0.00 0.00 0.98
70 71 6.769512 ACAGAGTACCAATCACACACTTATT 58.230 36.000 0.00 0.00 0.00 1.40
71 72 6.360370 ACAGAGTACCAATCACACACTTAT 57.640 37.500 0.00 0.00 0.00 1.73
72 73 5.801531 ACAGAGTACCAATCACACACTTA 57.198 39.130 0.00 0.00 0.00 2.24
73 74 4.689612 ACAGAGTACCAATCACACACTT 57.310 40.909 0.00 0.00 0.00 3.16
74 75 4.689612 AACAGAGTACCAATCACACACT 57.310 40.909 0.00 0.00 0.00 3.55
75 76 8.542497 TTTATAACAGAGTACCAATCACACAC 57.458 34.615 0.00 0.00 0.00 3.82
76 77 9.378551 GATTTATAACAGAGTACCAATCACACA 57.621 33.333 0.00 0.00 0.00 3.72
77 78 8.827677 GGATTTATAACAGAGTACCAATCACAC 58.172 37.037 0.00 0.00 0.00 3.82
78 79 8.768397 AGGATTTATAACAGAGTACCAATCACA 58.232 33.333 0.00 0.00 0.00 3.58
79 80 9.614792 AAGGATTTATAACAGAGTACCAATCAC 57.385 33.333 0.00 0.00 0.00 3.06
80 81 9.832445 GAAGGATTTATAACAGAGTACCAATCA 57.168 33.333 0.00 0.00 0.00 2.57
81 82 9.832445 TGAAGGATTTATAACAGAGTACCAATC 57.168 33.333 0.00 0.00 0.00 2.67
83 84 9.667107 CTTGAAGGATTTATAACAGAGTACCAA 57.333 33.333 0.00 0.00 0.00 3.67
84 85 8.822805 ACTTGAAGGATTTATAACAGAGTACCA 58.177 33.333 0.00 0.00 0.00 3.25
88 89 9.877178 CAGTACTTGAAGGATTTATAACAGAGT 57.123 33.333 0.00 0.00 0.00 3.24
89 90 9.877178 ACAGTACTTGAAGGATTTATAACAGAG 57.123 33.333 0.00 0.00 0.00 3.35
90 91 9.653287 CACAGTACTTGAAGGATTTATAACAGA 57.347 33.333 0.00 0.00 0.00 3.41
91 92 8.391106 GCACAGTACTTGAAGGATTTATAACAG 58.609 37.037 0.00 0.00 0.00 3.16
92 93 7.064134 CGCACAGTACTTGAAGGATTTATAACA 59.936 37.037 0.00 0.00 0.00 2.41
93 94 7.064253 ACGCACAGTACTTGAAGGATTTATAAC 59.936 37.037 0.00 0.00 0.00 1.89
94 95 7.064134 CACGCACAGTACTTGAAGGATTTATAA 59.936 37.037 0.00 0.00 0.00 0.98
95 96 6.533723 CACGCACAGTACTTGAAGGATTTATA 59.466 38.462 0.00 0.00 0.00 0.98
96 97 5.351465 CACGCACAGTACTTGAAGGATTTAT 59.649 40.000 0.00 0.00 0.00 1.40
97 98 4.688879 CACGCACAGTACTTGAAGGATTTA 59.311 41.667 0.00 0.00 0.00 1.40
98 99 3.498397 CACGCACAGTACTTGAAGGATTT 59.502 43.478 0.00 0.00 0.00 2.17
99 100 3.067106 CACGCACAGTACTTGAAGGATT 58.933 45.455 0.00 0.00 0.00 3.01
100 101 2.037251 ACACGCACAGTACTTGAAGGAT 59.963 45.455 0.00 0.00 0.00 3.24
101 102 1.411246 ACACGCACAGTACTTGAAGGA 59.589 47.619 0.00 0.00 0.00 3.36
102 103 1.792949 GACACGCACAGTACTTGAAGG 59.207 52.381 0.00 0.00 0.00 3.46
103 104 2.469826 TGACACGCACAGTACTTGAAG 58.530 47.619 0.00 0.00 0.00 3.02
104 105 2.469826 CTGACACGCACAGTACTTGAA 58.530 47.619 0.00 0.00 0.00 2.69
105 106 1.868109 GCTGACACGCACAGTACTTGA 60.868 52.381 0.00 0.00 37.64 3.02
106 107 0.508641 GCTGACACGCACAGTACTTG 59.491 55.000 0.00 0.00 37.64 3.16
107 108 0.104120 TGCTGACACGCACAGTACTT 59.896 50.000 0.00 0.00 37.64 2.24
108 109 0.318441 ATGCTGACACGCACAGTACT 59.682 50.000 0.00 0.00 43.61 2.73
109 110 1.148310 AATGCTGACACGCACAGTAC 58.852 50.000 0.00 0.00 43.61 2.73
110 111 2.029380 AGTAATGCTGACACGCACAGTA 60.029 45.455 0.00 0.00 43.61 2.74
111 112 1.148310 GTAATGCTGACACGCACAGT 58.852 50.000 0.00 0.00 43.61 3.55
112 113 1.432514 AGTAATGCTGACACGCACAG 58.567 50.000 2.32 0.00 43.61 3.66
113 114 3.605013 AGTAATGCTGACACGCACA 57.395 47.368 2.32 0.00 43.61 4.57
122 123 3.072038 TCATCCCTGGATCAGTAATGCTG 59.928 47.826 0.00 0.00 46.34 4.41
123 124 3.072184 GTCATCCCTGGATCAGTAATGCT 59.928 47.826 0.00 0.00 31.62 3.79
124 125 3.181451 TGTCATCCCTGGATCAGTAATGC 60.181 47.826 0.00 0.00 31.62 3.56
125 126 4.102210 AGTGTCATCCCTGGATCAGTAATG 59.898 45.833 0.00 0.00 31.62 1.90
126 127 4.102210 CAGTGTCATCCCTGGATCAGTAAT 59.898 45.833 0.00 0.00 31.62 1.89
127 128 3.452264 CAGTGTCATCCCTGGATCAGTAA 59.548 47.826 0.00 0.00 31.62 2.24
128 129 3.033909 CAGTGTCATCCCTGGATCAGTA 58.966 50.000 0.00 0.00 31.62 2.74
129 130 1.836166 CAGTGTCATCCCTGGATCAGT 59.164 52.381 0.00 0.00 31.62 3.41
130 131 2.616634 CAGTGTCATCCCTGGATCAG 57.383 55.000 0.00 0.00 31.62 2.90
136 137 0.957395 GTGCACCAGTGTCATCCCTG 60.957 60.000 5.22 0.00 0.00 4.45
137 138 1.376466 GTGCACCAGTGTCATCCCT 59.624 57.895 5.22 0.00 0.00 4.20
138 139 2.034879 CGTGCACCAGTGTCATCCC 61.035 63.158 12.15 0.00 0.00 3.85
139 140 2.034879 CCGTGCACCAGTGTCATCC 61.035 63.158 12.15 0.00 0.00 3.51
140 141 0.037697 TACCGTGCACCAGTGTCATC 60.038 55.000 12.15 0.00 0.00 2.92
141 142 0.037326 CTACCGTGCACCAGTGTCAT 60.037 55.000 12.15 0.00 0.00 3.06
142 143 1.110518 TCTACCGTGCACCAGTGTCA 61.111 55.000 12.15 0.00 0.00 3.58
143 144 0.246635 ATCTACCGTGCACCAGTGTC 59.753 55.000 12.15 0.00 0.00 3.67
144 145 0.246635 GATCTACCGTGCACCAGTGT 59.753 55.000 12.15 6.25 0.00 3.55
145 146 0.246360 TGATCTACCGTGCACCAGTG 59.754 55.000 12.15 4.80 0.00 3.66
146 147 0.532573 CTGATCTACCGTGCACCAGT 59.467 55.000 12.15 11.79 0.00 4.00
147 148 0.817654 TCTGATCTACCGTGCACCAG 59.182 55.000 12.15 10.77 0.00 4.00
148 149 0.530744 GTCTGATCTACCGTGCACCA 59.469 55.000 12.15 0.00 0.00 4.17
149 150 0.818296 AGTCTGATCTACCGTGCACC 59.182 55.000 12.15 0.00 0.00 5.01
150 151 1.202582 ACAGTCTGATCTACCGTGCAC 59.797 52.381 6.82 6.82 0.00 4.57
151 152 1.545841 ACAGTCTGATCTACCGTGCA 58.454 50.000 6.91 0.00 0.00 4.57
152 153 2.656560 AACAGTCTGATCTACCGTGC 57.343 50.000 6.91 0.00 0.00 5.34
153 154 4.169508 CTCAAACAGTCTGATCTACCGTG 58.830 47.826 6.91 0.00 0.00 4.94
154 155 3.193691 CCTCAAACAGTCTGATCTACCGT 59.806 47.826 6.91 0.00 0.00 4.83
155 156 3.193691 ACCTCAAACAGTCTGATCTACCG 59.806 47.826 6.91 0.00 0.00 4.02
156 157 4.464597 AGACCTCAAACAGTCTGATCTACC 59.535 45.833 6.91 0.00 41.74 3.18
157 158 5.652994 AGACCTCAAACAGTCTGATCTAC 57.347 43.478 6.91 0.00 41.74 2.59
164 165 1.341531 CGACCAGACCTCAAACAGTCT 59.658 52.381 0.00 0.00 44.12 3.24
165 166 1.784525 CGACCAGACCTCAAACAGTC 58.215 55.000 0.00 0.00 0.00 3.51
166 167 0.249911 GCGACCAGACCTCAAACAGT 60.250 55.000 0.00 0.00 0.00 3.55
167 168 0.034059 AGCGACCAGACCTCAAACAG 59.966 55.000 0.00 0.00 0.00 3.16
168 169 1.000506 GTAGCGACCAGACCTCAAACA 59.999 52.381 0.00 0.00 0.00 2.83
169 170 1.000506 TGTAGCGACCAGACCTCAAAC 59.999 52.381 0.00 0.00 0.00 2.93
170 171 1.000506 GTGTAGCGACCAGACCTCAAA 59.999 52.381 0.00 0.00 0.00 2.69
171 172 0.601558 GTGTAGCGACCAGACCTCAA 59.398 55.000 0.00 0.00 0.00 3.02
172 173 0.251209 AGTGTAGCGACCAGACCTCA 60.251 55.000 0.00 0.00 0.00 3.86
173 174 0.452585 GAGTGTAGCGACCAGACCTC 59.547 60.000 0.00 0.00 0.00 3.85
174 175 0.251209 TGAGTGTAGCGACCAGACCT 60.251 55.000 0.00 0.00 0.00 3.85
175 176 0.171455 CTGAGTGTAGCGACCAGACC 59.829 60.000 0.00 0.00 0.00 3.85
176 177 0.171455 CCTGAGTGTAGCGACCAGAC 59.829 60.000 3.84 0.00 0.00 3.51
177 178 1.595993 GCCTGAGTGTAGCGACCAGA 61.596 60.000 3.84 0.00 0.00 3.86
178 179 1.153745 GCCTGAGTGTAGCGACCAG 60.154 63.158 0.00 0.00 0.00 4.00
179 180 1.257750 ATGCCTGAGTGTAGCGACCA 61.258 55.000 0.00 0.00 0.00 4.02
180 181 0.744874 TATGCCTGAGTGTAGCGACC 59.255 55.000 0.00 0.00 0.00 4.79
181 182 1.269309 CCTATGCCTGAGTGTAGCGAC 60.269 57.143 0.00 0.00 0.00 5.19
182 183 1.032794 CCTATGCCTGAGTGTAGCGA 58.967 55.000 0.00 0.00 0.00 4.93
183 184 0.032678 CCCTATGCCTGAGTGTAGCG 59.967 60.000 0.00 0.00 0.00 4.26
184 185 0.394565 CCCCTATGCCTGAGTGTAGC 59.605 60.000 0.00 0.00 0.00 3.58
185 186 1.414181 CACCCCTATGCCTGAGTGTAG 59.586 57.143 0.00 0.00 0.00 2.74
186 187 1.273609 ACACCCCTATGCCTGAGTGTA 60.274 52.381 0.00 0.00 36.73 2.90
187 188 0.547712 ACACCCCTATGCCTGAGTGT 60.548 55.000 0.00 0.00 33.81 3.55
188 189 0.107508 CACACCCCTATGCCTGAGTG 60.108 60.000 0.00 0.00 0.00 3.51
189 190 0.547712 ACACACCCCTATGCCTGAGT 60.548 55.000 0.00 0.00 0.00 3.41
195 196 2.440247 GGCCACACACCCCTATGC 60.440 66.667 0.00 0.00 0.00 3.14
216 217 2.044946 AAATCCGGGGCTCTGTGC 60.045 61.111 0.00 0.00 41.94 4.57
219 220 2.045045 TGCAAATCCGGGGCTCTG 60.045 61.111 0.00 0.00 0.00 3.35
222 223 4.447342 CCCTGCAAATCCGGGGCT 62.447 66.667 0.00 0.00 44.17 5.19
235 237 2.679642 TCGCAAATTGGGCCCCTG 60.680 61.111 22.27 12.61 0.00 4.45
320 322 0.743345 CAAAGTACTGGCCGGCCTAC 60.743 60.000 43.34 35.43 36.94 3.18
321 323 1.600107 CAAAGTACTGGCCGGCCTA 59.400 57.895 43.34 27.53 36.94 3.93
322 324 2.351276 CAAAGTACTGGCCGGCCT 59.649 61.111 43.34 28.71 36.94 5.19
324 326 1.077716 ATCCAAAGTACTGGCCGGC 60.078 57.895 21.18 21.18 36.32 6.13
326 328 2.009774 CTTGATCCAAAGTACTGGCCG 58.990 52.381 0.00 0.00 36.32 6.13
328 330 2.162408 GTGCTTGATCCAAAGTACTGGC 59.838 50.000 0.00 0.00 39.05 4.85
346 348 2.802816 CCTATCGCTTCCATACAAGTGC 59.197 50.000 0.00 0.00 34.42 4.40
397 403 0.106419 GAAGAAACCACCCACCACCA 60.106 55.000 0.00 0.00 0.00 4.17
403 409 7.231925 GGAAAAGTAAATAGAAGAAACCACCCA 59.768 37.037 0.00 0.00 0.00 4.51
406 412 8.626526 TGTGGAAAAGTAAATAGAAGAAACCAC 58.373 33.333 0.00 0.00 40.90 4.16
407 413 8.754991 TGTGGAAAAGTAAATAGAAGAAACCA 57.245 30.769 0.00 0.00 0.00 3.67
427 433 9.528018 GACATTTTTAGTCTTTGATTTTGTGGA 57.472 29.630 0.00 0.00 33.29 4.02
645 652 8.051909 GCGCATATTGTAAAACAAATCATGAAG 58.948 33.333 0.30 0.00 41.96 3.02
647 654 6.475076 GGCGCATATTGTAAAACAAATCATGA 59.525 34.615 10.83 0.00 41.96 3.07
667 674 1.444836 ATAACTAAAACTGCGGCGCA 58.555 45.000 34.06 34.06 36.92 6.09
759 773 1.271217 GGTTGGGCTCGGTAAAGACTT 60.271 52.381 0.00 0.00 0.00 3.01
870 889 6.865834 TTTATTTATGTGGTGCCTGGAAAT 57.134 33.333 0.00 0.00 0.00 2.17
871 890 6.672266 TTTTATTTATGTGGTGCCTGGAAA 57.328 33.333 0.00 0.00 0.00 3.13
874 893 4.160252 AGCTTTTATTTATGTGGTGCCTGG 59.840 41.667 0.00 0.00 0.00 4.45
876 895 6.435904 TGTTAGCTTTTATTTATGTGGTGCCT 59.564 34.615 0.00 0.00 0.00 4.75
877 896 6.530181 GTGTTAGCTTTTATTTATGTGGTGCC 59.470 38.462 0.00 0.00 0.00 5.01
879 898 7.540745 GTGGTGTTAGCTTTTATTTATGTGGTG 59.459 37.037 0.00 0.00 0.00 4.17
880 899 7.450323 AGTGGTGTTAGCTTTTATTTATGTGGT 59.550 33.333 0.00 0.00 0.00 4.16
897 917 1.198759 GGAGCAGGGGAGTGGTGTTA 61.199 60.000 0.00 0.00 0.00 2.41
909 929 1.301293 GAGAAAGGGTGGGAGCAGG 59.699 63.158 0.00 0.00 0.00 4.85
1114 1191 1.378778 CCTCGTCGACCTCCTCCTT 60.379 63.158 10.58 0.00 0.00 3.36
1167 1244 1.152839 CTCCTCCTCCTCCTCGTCC 60.153 68.421 0.00 0.00 0.00 4.79
1194 1274 0.831711 GCTCCTCCTCATCCTCCTCC 60.832 65.000 0.00 0.00 0.00 4.30
1197 1277 2.206536 CGGCTCCTCCTCATCCTCC 61.207 68.421 0.00 0.00 0.00 4.30
1203 1283 2.043852 GACTCCGGCTCCTCCTCA 60.044 66.667 0.00 0.00 0.00 3.86
1227 1310 1.513586 CACGCTTACCTCGTCGTCC 60.514 63.158 0.00 0.00 38.19 4.79
1250 1336 4.767255 CGAGCACCCAGACCCTGC 62.767 72.222 0.00 0.00 0.00 4.85
1251 1337 1.903877 AATCGAGCACCCAGACCCTG 61.904 60.000 0.00 0.00 0.00 4.45
1257 1351 1.656652 CCTGTAAATCGAGCACCCAG 58.343 55.000 0.00 0.00 0.00 4.45
1295 1389 9.798994 CCGATAACTACTACAAAACAATCTAGT 57.201 33.333 0.00 0.00 0.00 2.57
1296 1390 8.753175 GCCGATAACTACTACAAAACAATCTAG 58.247 37.037 0.00 0.00 0.00 2.43
1298 1392 7.101054 TGCCGATAACTACTACAAAACAATCT 58.899 34.615 0.00 0.00 0.00 2.40
1300 1394 7.012044 GGATGCCGATAACTACTACAAAACAAT 59.988 37.037 0.00 0.00 0.00 2.71
1302 1396 5.813672 GGATGCCGATAACTACTACAAAACA 59.186 40.000 0.00 0.00 0.00 2.83
1306 1400 3.005050 CGGGATGCCGATAACTACTACAA 59.995 47.826 22.73 0.00 34.88 2.41
1307 1401 2.555325 CGGGATGCCGATAACTACTACA 59.445 50.000 22.73 0.00 34.88 2.74
1308 1402 2.555757 ACGGGATGCCGATAACTACTAC 59.444 50.000 33.63 0.00 36.94 2.73
1309 1403 2.867624 ACGGGATGCCGATAACTACTA 58.132 47.619 33.63 0.00 36.94 1.82
1310 1404 1.700955 ACGGGATGCCGATAACTACT 58.299 50.000 33.63 3.61 36.94 2.57
1311 1405 2.401351 GAACGGGATGCCGATAACTAC 58.599 52.381 33.63 4.05 36.94 2.73
1330 1424 6.460953 GCTTCCAAATTATTATTGAAGCCGGA 60.461 38.462 5.05 0.00 40.45 5.14
1418 1518 7.782897 ATACTACTGCTGCTCCTATTTATGA 57.217 36.000 0.00 0.00 0.00 2.15
1419 1519 9.579768 CTAATACTACTGCTGCTCCTATTTATG 57.420 37.037 0.00 0.00 0.00 1.90
1423 1523 8.707796 TTACTAATACTACTGCTGCTCCTATT 57.292 34.615 0.00 0.00 0.00 1.73
1443 1543 9.976511 CCTGGTAATGTCTCGAAATTATTACTA 57.023 33.333 15.22 11.25 35.57 1.82
1517 1620 1.963515 ACACATGAAAAGGGCCACTTC 59.036 47.619 6.18 8.55 38.85 3.01
1536 1640 3.837213 ACTAGTGCATTGCATTGTCAC 57.163 42.857 15.49 19.46 41.91 3.67
1538 1642 4.083110 AGACAACTAGTGCATTGCATTGTC 60.083 41.667 30.49 30.49 46.33 3.18
1552 1661 4.753233 ACTGCAAGCATCTAGACAACTAG 58.247 43.478 0.00 0.00 41.96 2.57
1576 1685 7.324616 GCTTCTTACTTTGCACAAGAATACAAG 59.675 37.037 13.35 2.29 37.58 3.16
1617 1726 2.138596 AAAGCTCAAACACCATTGCG 57.861 45.000 0.00 0.00 0.00 4.85
1819 1928 3.005050 AGAAACACACCATGTCAGCATTG 59.995 43.478 0.00 0.00 42.31 2.82
1820 1929 3.225104 AGAAACACACCATGTCAGCATT 58.775 40.909 0.00 0.00 42.31 3.56
1846 1955 6.439636 TTTATATTCAGGGGGATCTCACAG 57.560 41.667 0.00 0.00 0.00 3.66
1890 2001 3.377798 TGTATCAAATGCGCACATGATGT 59.622 39.130 33.40 20.75 36.36 3.06
1918 2029 7.263100 TGATGAGAATGCAATATACACCAAC 57.737 36.000 0.00 0.00 0.00 3.77
2255 2367 1.139058 AGGATGGACAGAACCGTATGC 59.861 52.381 0.00 0.00 0.00 3.14
2449 2564 2.754465 TGGATATTGACCCTGTACCGT 58.246 47.619 0.00 0.00 0.00 4.83
2465 2580 7.308408 CGTTCTGCAATATGATTGAAGATGGAT 60.308 37.037 10.10 0.00 34.27 3.41
2580 2701 7.005062 ACGCACAGCTAGAAATACAAATAAG 57.995 36.000 0.00 0.00 0.00 1.73
2624 2745 7.797123 CGTTTTTGACACTAGAATTAACAGGTC 59.203 37.037 0.00 0.00 0.00 3.85
2640 2761 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
2641 2762 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
2642 2763 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
2643 2764 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
2644 2765 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
2645 2766 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
2647 2768 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
2648 2769 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
2649 2770 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
2650 2771 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
2651 2772 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2653 2774 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2657 2778 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
2658 2779 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
2659 2780 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
2660 2781 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
2661 2782 1.229131 TACTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
2662 2783 1.002069 TTACTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
2663 2784 2.149973 TTTACTACTCCCTCCGTCCC 57.850 55.000 0.00 0.00 0.00 4.46
2664 2785 4.261952 GCTAATTTACTACTCCCTCCGTCC 60.262 50.000 0.00 0.00 0.00 4.79
2665 2786 4.340381 TGCTAATTTACTACTCCCTCCGTC 59.660 45.833 0.00 0.00 0.00 4.79
2666 2787 4.284178 TGCTAATTTACTACTCCCTCCGT 58.716 43.478 0.00 0.00 0.00 4.69
2667 2788 4.931661 TGCTAATTTACTACTCCCTCCG 57.068 45.455 0.00 0.00 0.00 4.63
2668 2789 6.874664 GCTATTGCTAATTTACTACTCCCTCC 59.125 42.308 0.00 0.00 36.03 4.30
2669 2790 7.892778 GCTATTGCTAATTTACTACTCCCTC 57.107 40.000 0.00 0.00 36.03 4.30
2730 2851 2.534298 CTACACTCGCAGACCAGAATG 58.466 52.381 0.00 0.00 0.00 2.67
2772 2893 5.362430 AGCAACAAATAGAACAAAGGGACAA 59.638 36.000 0.00 0.00 0.00 3.18
2828 2949 3.037549 CTCTACTGCCCTCCTCTTTGAT 58.962 50.000 0.00 0.00 0.00 2.57
2996 3117 3.199880 AGCATATGTCGGCTTAAGCTT 57.800 42.857 25.88 3.48 36.92 3.74
2998 3119 3.654414 AGTAGCATATGTCGGCTTAAGC 58.346 45.455 19.53 19.53 41.41 3.09
3106 3227 6.266558 AGTTGGTTCATTGCCACAATAAACTA 59.733 34.615 6.35 0.00 35.46 2.24
3203 3325 8.996271 TCAAATAGATGCACTGCTGATTTATAG 58.004 33.333 1.98 0.00 0.00 1.31
3214 3336 4.940046 AGTTCCACTCAAATAGATGCACTG 59.060 41.667 0.00 0.00 0.00 3.66
3312 3434 2.428890 TCGCCACATCAACCAAAACTTT 59.571 40.909 0.00 0.00 0.00 2.66
3342 3464 3.708236 ACTGAAGGGGGCTCTTCTATA 57.292 47.619 17.17 2.78 42.54 1.31
3373 3495 4.492494 TGTTCTCATATGGATGCACAGT 57.508 40.909 2.13 0.00 32.62 3.55
3419 3542 3.338249 GTGCCTGTCACAGTGAATACAT 58.662 45.455 4.32 0.00 44.98 2.29
3432 3555 1.542915 ACATGCTCATTTGTGCCTGTC 59.457 47.619 8.93 0.00 38.39 3.51
3717 3843 3.226347 GCGTCAGCATGTTTTTGACTAC 58.774 45.455 14.97 7.50 44.35 2.73
3719 3845 2.405892 GCGTCAGCATGTTTTTGACT 57.594 45.000 14.97 0.00 44.35 3.41
3741 3867 6.361433 TGATTTTAACAAGAACAGGGTCAGA 58.639 36.000 0.00 0.00 0.00 3.27
3935 4061 5.146298 TCAGCCAATATTCCATTAATGCCA 58.854 37.500 10.11 0.00 0.00 4.92
4000 4126 6.644248 AAAATACTGAAAGGGTTTTAGCGT 57.356 33.333 0.00 0.00 39.30 5.07
4075 4201 9.455144 TCCCAAGACCCTGAGTAAATATAATAA 57.545 33.333 0.00 0.00 0.00 1.40
4077 4203 7.947782 TCCCAAGACCCTGAGTAAATATAAT 57.052 36.000 0.00 0.00 0.00 1.28
4080 4206 6.652205 TTTCCCAAGACCCTGAGTAAATAT 57.348 37.500 0.00 0.00 0.00 1.28
4230 4361 3.374745 AGAATTTCACAGCACGCAAAAG 58.625 40.909 0.00 0.00 0.00 2.27
5084 5250 7.162062 GCTATGTTAAGCAATCTTTTACGTTCG 59.838 37.037 0.00 0.00 42.30 3.95
5195 5361 5.633830 AAAACATACCTGCAGTCTCAATG 57.366 39.130 13.81 10.53 0.00 2.82
5344 5514 4.499183 AGAAAATAAGCACTCTGGAGTCG 58.501 43.478 0.00 0.00 40.20 4.18
5409 5738 6.772233 TGTGTGACCATGATTTCCTAATATGG 59.228 38.462 0.00 0.00 43.02 2.74
5957 6310 9.121517 CTGCAATTTAGTTTCATTGTTAGACAG 57.878 33.333 0.00 0.00 33.58 3.51
6903 7300 8.752005 ATCATGCCTAACATAAACACATAAGT 57.248 30.769 0.00 0.00 36.64 2.24
7061 7459 2.224917 TGGGAAACAATGGACTGGGTAC 60.225 50.000 0.00 0.00 0.00 3.34
7472 7870 8.597167 TCAGAGGATATACCCTTTATGTCATTG 58.403 37.037 0.00 0.00 40.05 2.82
7743 8141 9.992910 TTCGATGTTTTTGATAATTCTCTCATG 57.007 29.630 0.00 0.00 0.00 3.07
7775 8173 2.993539 GCGAGTTATCCTTGCCTCC 58.006 57.895 0.00 0.00 43.79 4.30
7814 8212 2.514803 CGGTCCAACTTCTTCCCAATT 58.485 47.619 0.00 0.00 0.00 2.32
7946 8344 3.286353 TCATGTCACAAACTTGAAGCCA 58.714 40.909 0.00 0.00 38.65 4.75
7947 8345 3.988379 TCATGTCACAAACTTGAAGCC 57.012 42.857 0.00 0.00 38.65 4.35
7984 8382 3.364664 CGCCATGCATAGCTGAAACATAG 60.365 47.826 15.17 0.00 0.00 2.23
8056 8454 1.606994 CGAATCGGAACAAGGGTGACA 60.607 52.381 0.00 0.00 0.00 3.58
8138 8536 6.102897 TCTTGGTTCTCTTTCTCAACTAGG 57.897 41.667 0.00 0.00 0.00 3.02
8156 8554 3.003793 TCTCTCGCTCATCGTATTCTTGG 59.996 47.826 0.00 0.00 39.67 3.61
8231 8629 5.532779 AGAAGAACAAAATCAAGACCAGGAC 59.467 40.000 0.00 0.00 0.00 3.85
8232 8630 5.694995 AGAAGAACAAAATCAAGACCAGGA 58.305 37.500 0.00 0.00 0.00 3.86
8233 8631 6.396829 AAGAAGAACAAAATCAAGACCAGG 57.603 37.500 0.00 0.00 0.00 4.45
8234 8632 7.072030 CGTAAGAAGAACAAAATCAAGACCAG 58.928 38.462 0.00 0.00 43.02 4.00
8235 8633 6.954944 CGTAAGAAGAACAAAATCAAGACCA 58.045 36.000 0.00 0.00 43.02 4.02
8275 8679 3.816994 TCTTCTGCATGGGAATGATCAG 58.183 45.455 0.09 0.00 0.00 2.90
8307 8716 1.537202 GTTGGCGTCATCTTCTGCTTT 59.463 47.619 0.00 0.00 0.00 3.51
8424 8854 2.469274 AGACCAGTGATGTTCAGCAG 57.531 50.000 0.00 0.00 0.00 4.24
8427 8857 5.954296 AAATCAAGACCAGTGATGTTCAG 57.046 39.130 0.00 0.00 35.87 3.02
8457 8890 5.753438 TGATCGCCAAGATTAGTAATGTCAC 59.247 40.000 0.00 0.00 40.26 3.67
8484 8917 5.392380 GGTGTCTTATTCTGCATGACAAAGG 60.392 44.000 0.00 0.00 39.01 3.11
8561 8994 1.078143 GCCGCTTCTTGGATGAGGT 60.078 57.895 5.47 0.00 31.43 3.85
8596 9029 1.140852 CATACCGAGCCCAGGAAATCA 59.859 52.381 0.00 0.00 0.00 2.57
8634 9067 1.981951 TTGTGCTGGACTGACTGGCA 61.982 55.000 0.00 0.00 0.00 4.92
8647 9085 2.126417 CTTCAGCTTGCGCTTGTGCT 62.126 55.000 9.73 10.03 46.47 4.40
8648 9086 1.728426 CTTCAGCTTGCGCTTGTGC 60.728 57.895 9.73 7.68 46.47 4.57
8649 9087 0.110328 CTCTTCAGCTTGCGCTTGTG 60.110 55.000 9.73 0.67 46.47 3.33
8650 9088 0.250038 TCTCTTCAGCTTGCGCTTGT 60.250 50.000 9.73 0.00 46.47 3.16
8651 9089 1.085091 ATCTCTTCAGCTTGCGCTTG 58.915 50.000 9.73 1.85 46.47 4.01
8652 9090 1.085091 CATCTCTTCAGCTTGCGCTT 58.915 50.000 9.73 0.00 46.47 4.68
8677 9115 2.432510 AGCTAGGTTAGTAAGCAGCAGG 59.567 50.000 24.89 10.23 38.75 4.85
8690 9128 5.335976 GCATTGTTTTCAGCTTAGCTAGGTT 60.336 40.000 6.35 0.00 36.40 3.50
8714 9152 0.405585 TTCCCCTTCTTTCCCTGCAG 59.594 55.000 6.78 6.78 0.00 4.41
8756 9194 1.421268 ACATCTCCTGACAAGGCAACA 59.579 47.619 0.00 0.00 44.11 3.33
8830 9271 2.496899 ACCAAAGATCCGTTGAGCAT 57.503 45.000 8.05 0.00 0.00 3.79
8831 9272 2.270352 AACCAAAGATCCGTTGAGCA 57.730 45.000 8.05 0.00 0.00 4.26
8832 9273 2.678336 CCTAACCAAAGATCCGTTGAGC 59.322 50.000 8.05 0.00 0.00 4.26
8834 9275 4.360951 AACCTAACCAAAGATCCGTTGA 57.639 40.909 8.05 0.00 0.00 3.18
8835 9276 6.373216 TGATTAACCTAACCAAAGATCCGTTG 59.627 38.462 0.00 0.00 0.00 4.10
8836 9277 6.373495 GTGATTAACCTAACCAAAGATCCGTT 59.627 38.462 0.00 0.00 0.00 4.44
8837 9278 5.878669 GTGATTAACCTAACCAAAGATCCGT 59.121 40.000 0.00 0.00 0.00 4.69
8838 9279 6.037172 CAGTGATTAACCTAACCAAAGATCCG 59.963 42.308 0.00 0.00 0.00 4.18
8839 9280 6.884836 ACAGTGATTAACCTAACCAAAGATCC 59.115 38.462 0.00 0.00 0.00 3.36
8840 9281 7.065923 GGACAGTGATTAACCTAACCAAAGATC 59.934 40.741 0.00 0.00 0.00 2.75
8841 9282 6.884836 GGACAGTGATTAACCTAACCAAAGAT 59.115 38.462 0.00 0.00 0.00 2.40
8843 9284 6.001460 TGGACAGTGATTAACCTAACCAAAG 58.999 40.000 0.00 0.00 0.00 2.77
8844 9285 5.942961 TGGACAGTGATTAACCTAACCAAA 58.057 37.500 0.00 0.00 0.00 3.28
8902 9344 1.568606 CGATCCTGATGCACTCACTG 58.431 55.000 0.00 0.00 0.00 3.66
8929 9376 1.153588 GCCCGGCCAACATTCAATG 60.154 57.895 2.24 0.00 0.00 2.82
8953 9400 1.068402 CATCTTCATGCGCAAACACCA 60.068 47.619 17.11 0.00 0.00 4.17
8985 9432 8.460428 TGTCGTTTCTAAAACCATTTTTGTAGT 58.540 29.630 0.00 0.00 35.62 2.73
9007 9454 5.730802 GCAAATTGAAATTCAATGCATGTCG 59.269 36.000 22.21 9.31 45.57 4.35
9010 9457 6.128145 TGGAGCAAATTGAAATTCAATGCATG 60.128 34.615 26.29 21.78 45.57 4.06
9139 9640 0.386352 TGACTAACAAGGTCGTCGCG 60.386 55.000 0.00 0.00 36.58 5.87
9144 9645 3.741344 CACTCCTTTGACTAACAAGGTCG 59.259 47.826 0.00 0.00 39.77 4.79
9145 9646 3.498777 GCACTCCTTTGACTAACAAGGTC 59.501 47.826 0.00 0.00 39.77 3.85
9146 9647 3.136626 AGCACTCCTTTGACTAACAAGGT 59.863 43.478 0.00 0.00 39.77 3.50
9147 9648 3.499918 CAGCACTCCTTTGACTAACAAGG 59.500 47.826 0.00 0.00 39.77 3.61
9148 9649 3.499918 CCAGCACTCCTTTGACTAACAAG 59.500 47.826 0.00 0.00 39.77 3.16
9149 9650 3.118038 ACCAGCACTCCTTTGACTAACAA 60.118 43.478 0.00 0.00 36.65 2.83
9150 9651 2.438021 ACCAGCACTCCTTTGACTAACA 59.562 45.455 0.00 0.00 0.00 2.41
9151 9652 2.808543 CACCAGCACTCCTTTGACTAAC 59.191 50.000 0.00 0.00 0.00 2.34
9152 9653 2.224523 CCACCAGCACTCCTTTGACTAA 60.225 50.000 0.00 0.00 0.00 2.24
9153 9654 1.347707 CCACCAGCACTCCTTTGACTA 59.652 52.381 0.00 0.00 0.00 2.59
9154 9655 0.109342 CCACCAGCACTCCTTTGACT 59.891 55.000 0.00 0.00 0.00 3.41
9155 9656 0.179018 ACCACCAGCACTCCTTTGAC 60.179 55.000 0.00 0.00 0.00 3.18
9194 9695 0.250338 GAGGGGATATTCCACCACGC 60.250 60.000 1.43 0.00 42.28 5.34
9195 9696 0.033504 CGAGGGGATATTCCACCACG 59.966 60.000 1.43 0.00 42.28 4.94
9198 9699 1.375326 GGCGAGGGGATATTCCACC 59.625 63.158 1.43 0.00 42.28 4.61
9199 9700 1.004918 CGGCGAGGGGATATTCCAC 60.005 63.158 0.00 0.00 41.37 4.02
9203 9704 2.847234 TGCCGGCGAGGGGATATT 60.847 61.111 23.90 0.00 41.48 1.28
9204 9705 3.314331 CTGCCGGCGAGGGGATAT 61.314 66.667 23.90 0.00 41.48 1.63
9219 9720 4.790962 ACAGCTCCATGCCGCCTG 62.791 66.667 1.40 1.22 44.23 4.85
9220 9721 4.790962 CACAGCTCCATGCCGCCT 62.791 66.667 1.40 0.00 44.23 5.52
9224 9725 4.828296 CCCCCACAGCTCCATGCC 62.828 72.222 0.00 0.00 44.23 4.40
9256 9757 4.518970 TGAGAAAATGTAACTGAACCTGCC 59.481 41.667 0.00 0.00 0.00 4.85
9258 9759 8.925161 TTTTTGAGAAAATGTAACTGAACCTG 57.075 30.769 0.00 0.00 30.07 4.00
9284 9785 6.547510 AGTCTTGTAACTGAATCTGCCTTTTT 59.452 34.615 0.00 0.00 0.00 1.94
9285 9786 6.064717 AGTCTTGTAACTGAATCTGCCTTTT 58.935 36.000 0.00 0.00 0.00 2.27
9286 9787 5.625150 AGTCTTGTAACTGAATCTGCCTTT 58.375 37.500 0.00 0.00 0.00 3.11
9394 9909 5.505324 GCTTGCATAAAGAGTCCATGATGAC 60.505 44.000 0.00 0.00 38.24 3.06
9458 9973 4.513442 CGGGATGGAGTGTTTATTTCTGA 58.487 43.478 0.00 0.00 0.00 3.27
9484 10000 3.928992 TCATCTACGTATACGGACGATCC 59.071 47.826 27.62 0.00 45.82 3.36
9493 10009 9.119329 GAAGACAATCACATCATCTACGTATAC 57.881 37.037 0.00 0.00 0.00 1.47
9519 10078 6.455360 ACATCATTGTGTTTGGCTATTAGG 57.545 37.500 0.00 0.00 33.85 2.69
9545 10104 5.629600 ATCTCAAGAAGAAGCTTAGCAGCAT 60.630 40.000 7.07 0.00 41.58 3.79
9564 10123 4.642885 ACCCGAAGAACAACAAAAATCTCA 59.357 37.500 0.00 0.00 0.00 3.27
9603 12050 3.119173 TGGGGAAATAGAGCATTTTTGCG 60.119 43.478 0.00 0.00 36.96 4.85
9628 12075 4.397417 CCAATCAGATCCTCCTCACAAAAC 59.603 45.833 0.00 0.00 0.00 2.43
9660 12107 2.582728 TTGCCAGTTCAGCAAACTTG 57.417 45.000 2.04 1.13 46.26 3.16
9718 12173 1.070289 GACAGTTGAAACCCGTCCTCT 59.930 52.381 3.19 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.