Multiple sequence alignment - TraesCS3D01G068300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G068300 chr3D 100.000 3014 0 0 1 3014 30059494 30062507 0.000000e+00 5566
1 TraesCS3D01G068300 chr3D 98.792 662 8 0 2 663 288046128 288046789 0.000000e+00 1179
2 TraesCS3D01G068300 chr3D 98.792 662 7 1 2 663 459099311 459098651 0.000000e+00 1177
3 TraesCS3D01G068300 chr3D 98.498 666 10 0 2 667 297448454 297447789 0.000000e+00 1175
4 TraesCS3D01G068300 chr3D 79.894 1507 263 28 733 2216 30280103 30281592 0.000000e+00 1068
5 TraesCS3D01G068300 chr3A 92.860 2213 119 15 733 2941 41624585 41626762 0.000000e+00 3175
6 TraesCS3D01G068300 chr3A 81.581 1379 227 20 733 2099 40938157 40939520 0.000000e+00 1114
7 TraesCS3D01G068300 chr3A 79.429 1507 270 26 733 2216 42018689 42020178 0.000000e+00 1029
8 TraesCS3D01G068300 chr3A 78.502 1535 277 42 733 2238 41238816 41240326 0.000000e+00 957
9 TraesCS3D01G068300 chr3A 77.915 1295 266 18 733 2019 41218452 41219734 0.000000e+00 789
10 TraesCS3D01G068300 chr6D 98.649 666 9 0 2 667 291374572 291373907 0.000000e+00 1181
11 TraesCS3D01G068300 chr6D 98.792 662 8 0 2 663 11162759 11163420 0.000000e+00 1179
12 TraesCS3D01G068300 chr4D 98.792 662 8 0 2 663 185959951 185959290 0.000000e+00 1179
13 TraesCS3D01G068300 chr7D 98.643 663 9 0 2 664 550609382 550610044 0.000000e+00 1175
14 TraesCS3D01G068300 chr5D 98.640 662 9 0 2 663 65112638 65113299 0.000000e+00 1173
15 TraesCS3D01G068300 chr2D 98.498 666 9 1 2 666 487267130 487266465 0.000000e+00 1173
16 TraesCS3D01G068300 chr3B 78.784 1546 283 32 733 2254 52740871 52739347 0.000000e+00 996
17 TraesCS3D01G068300 chr3B 79.937 1276 229 23 733 1998 52428109 52429367 0.000000e+00 913
18 TraesCS3D01G068300 chr3B 79.521 1294 244 19 733 2017 52415931 52417212 0.000000e+00 902
19 TraesCS3D01G068300 chr3B 78.858 1296 248 23 733 2017 51926890 51928170 0.000000e+00 852
20 TraesCS3D01G068300 chr3B 79.114 790 147 18 749 1530 51230327 51231106 2.060000e-146 529
21 TraesCS3D01G068300 chr3B 78.914 792 146 21 749 1530 51949583 51950363 4.450000e-143 518
22 TraesCS3D01G068300 chr3B 83.895 267 34 5 2681 2939 52739257 52738992 2.320000e-61 246
23 TraesCS3D01G068300 chr3B 92.000 75 6 0 2681 2755 51860293 51860367 4.110000e-19 106
24 TraesCS3D01G068300 chr2B 80.170 1291 216 19 733 2020 788098709 788099962 0.000000e+00 929
25 TraesCS3D01G068300 chr2A 94.203 69 4 0 664 732 6508334 6508266 4.110000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G068300 chr3D 30059494 30062507 3013 False 5566 5566 100.0000 1 3014 1 chr3D.!!$F1 3013
1 TraesCS3D01G068300 chr3D 288046128 288046789 661 False 1179 1179 98.7920 2 663 1 chr3D.!!$F3 661
2 TraesCS3D01G068300 chr3D 459098651 459099311 660 True 1177 1177 98.7920 2 663 1 chr3D.!!$R2 661
3 TraesCS3D01G068300 chr3D 297447789 297448454 665 True 1175 1175 98.4980 2 667 1 chr3D.!!$R1 665
4 TraesCS3D01G068300 chr3D 30280103 30281592 1489 False 1068 1068 79.8940 733 2216 1 chr3D.!!$F2 1483
5 TraesCS3D01G068300 chr3A 41624585 41626762 2177 False 3175 3175 92.8600 733 2941 1 chr3A.!!$F4 2208
6 TraesCS3D01G068300 chr3A 40938157 40939520 1363 False 1114 1114 81.5810 733 2099 1 chr3A.!!$F1 1366
7 TraesCS3D01G068300 chr3A 42018689 42020178 1489 False 1029 1029 79.4290 733 2216 1 chr3A.!!$F5 1483
8 TraesCS3D01G068300 chr3A 41238816 41240326 1510 False 957 957 78.5020 733 2238 1 chr3A.!!$F3 1505
9 TraesCS3D01G068300 chr3A 41218452 41219734 1282 False 789 789 77.9150 733 2019 1 chr3A.!!$F2 1286
10 TraesCS3D01G068300 chr6D 291373907 291374572 665 True 1181 1181 98.6490 2 667 1 chr6D.!!$R1 665
11 TraesCS3D01G068300 chr6D 11162759 11163420 661 False 1179 1179 98.7920 2 663 1 chr6D.!!$F1 661
12 TraesCS3D01G068300 chr4D 185959290 185959951 661 True 1179 1179 98.7920 2 663 1 chr4D.!!$R1 661
13 TraesCS3D01G068300 chr7D 550609382 550610044 662 False 1175 1175 98.6430 2 664 1 chr7D.!!$F1 662
14 TraesCS3D01G068300 chr5D 65112638 65113299 661 False 1173 1173 98.6400 2 663 1 chr5D.!!$F1 661
15 TraesCS3D01G068300 chr2D 487266465 487267130 665 True 1173 1173 98.4980 2 666 1 chr2D.!!$R1 664
16 TraesCS3D01G068300 chr3B 52428109 52429367 1258 False 913 913 79.9370 733 1998 1 chr3B.!!$F6 1265
17 TraesCS3D01G068300 chr3B 52415931 52417212 1281 False 902 902 79.5210 733 2017 1 chr3B.!!$F5 1284
18 TraesCS3D01G068300 chr3B 51926890 51928170 1280 False 852 852 78.8580 733 2017 1 chr3B.!!$F3 1284
19 TraesCS3D01G068300 chr3B 52738992 52740871 1879 True 621 996 81.3395 733 2939 2 chr3B.!!$R1 2206
20 TraesCS3D01G068300 chr3B 51230327 51231106 779 False 529 529 79.1140 749 1530 1 chr3B.!!$F1 781
21 TraesCS3D01G068300 chr3B 51949583 51950363 780 False 518 518 78.9140 749 1530 1 chr3B.!!$F4 781
22 TraesCS3D01G068300 chr2B 788098709 788099962 1253 False 929 929 80.1700 733 2020 1 chr2B.!!$F1 1287

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
740 742 0.171007 CAAAACCATGGCGCCTACTG 59.829 55.0 29.7 20.97 0.0 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2290 2338 0.386478 GCAGCAACTTACAGCAGTGC 60.386 55.0 7.13 7.13 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
565 567 6.695429 TGTTGCTTATTAATGATTTGGTGCA 58.305 32.000 0.00 0.00 0.00 4.57
583 585 7.244886 TGGTGCAGCATACAAGAGTATATAT 57.755 36.000 15.99 0.00 38.88 0.86
668 670 8.693625 ACCATAATGACTACTCTAACAGTTACC 58.306 37.037 0.00 0.00 36.43 2.85
669 671 7.861372 CCATAATGACTACTCTAACAGTTACCG 59.139 40.741 0.00 0.00 36.43 4.02
670 672 6.830873 AATGACTACTCTAACAGTTACCGT 57.169 37.500 0.00 0.00 36.43 4.83
671 673 5.618056 TGACTACTCTAACAGTTACCGTG 57.382 43.478 0.00 0.00 36.43 4.94
672 674 4.456911 TGACTACTCTAACAGTTACCGTGG 59.543 45.833 0.00 0.00 36.43 4.94
673 675 4.401925 ACTACTCTAACAGTTACCGTGGT 58.598 43.478 0.00 0.00 36.43 4.16
674 676 5.560724 ACTACTCTAACAGTTACCGTGGTA 58.439 41.667 0.00 0.00 36.43 3.25
675 677 6.003950 ACTACTCTAACAGTTACCGTGGTAA 58.996 40.000 7.40 7.40 38.14 2.85
684 686 3.399440 TTACCGTGGTAACCGTGAATT 57.601 42.857 7.40 0.00 35.88 2.17
685 687 2.259266 ACCGTGGTAACCGTGAATTT 57.741 45.000 0.00 0.00 0.00 1.82
686 688 2.145536 ACCGTGGTAACCGTGAATTTC 58.854 47.619 0.00 0.00 0.00 2.17
687 689 1.127213 CCGTGGTAACCGTGAATTTCG 59.873 52.381 0.00 0.00 0.00 3.46
688 690 1.462869 CGTGGTAACCGTGAATTTCGC 60.463 52.381 0.00 0.00 0.00 4.70
689 691 1.802365 GTGGTAACCGTGAATTTCGCT 59.198 47.619 8.23 0.00 0.00 4.93
690 692 1.801771 TGGTAACCGTGAATTTCGCTG 59.198 47.619 8.23 4.34 0.00 5.18
691 693 1.465187 GGTAACCGTGAATTTCGCTGC 60.465 52.381 8.23 0.00 0.00 5.25
692 694 0.800012 TAACCGTGAATTTCGCTGCC 59.200 50.000 8.23 0.00 0.00 4.85
693 695 1.862602 AACCGTGAATTTCGCTGCCC 61.863 55.000 8.23 0.00 0.00 5.36
694 696 2.485122 CGTGAATTTCGCTGCCCC 59.515 61.111 8.23 0.00 0.00 5.80
695 697 2.040544 CGTGAATTTCGCTGCCCCT 61.041 57.895 8.23 0.00 0.00 4.79
696 698 1.803289 GTGAATTTCGCTGCCCCTC 59.197 57.895 2.69 0.00 0.00 4.30
697 699 1.745115 TGAATTTCGCTGCCCCTCG 60.745 57.895 0.00 0.00 0.00 4.63
698 700 1.449601 GAATTTCGCTGCCCCTCGA 60.450 57.895 0.00 0.00 0.00 4.04
699 701 1.432270 GAATTTCGCTGCCCCTCGAG 61.432 60.000 5.13 5.13 36.02 4.04
700 702 1.899437 AATTTCGCTGCCCCTCGAGA 61.899 55.000 15.71 0.00 36.02 4.04
701 703 1.899437 ATTTCGCTGCCCCTCGAGAA 61.899 55.000 15.71 0.00 36.02 2.87
702 704 2.107041 TTTCGCTGCCCCTCGAGAAA 62.107 55.000 15.71 0.70 36.02 2.52
703 705 2.047274 CGCTGCCCCTCGAGAAAA 60.047 61.111 15.71 0.00 0.00 2.29
704 706 1.671054 CGCTGCCCCTCGAGAAAAA 60.671 57.895 15.71 0.00 0.00 1.94
718 720 2.200092 AAAAAGGGCCGCTTGGGA 59.800 55.556 7.18 0.00 38.47 4.37
719 721 1.229177 AAAAAGGGCCGCTTGGGAT 60.229 52.632 7.18 0.00 38.47 3.85
720 722 1.257750 AAAAAGGGCCGCTTGGGATC 61.258 55.000 7.18 0.00 38.47 3.36
721 723 3.662117 AAAGGGCCGCTTGGGATCC 62.662 63.158 1.92 1.92 38.47 3.36
723 725 4.440829 GGGCCGCTTGGGATCCAA 62.441 66.667 15.23 0.00 41.69 3.53
724 726 2.362375 GGCCGCTTGGGATCCAAA 60.362 61.111 15.23 7.93 43.44 3.28
725 727 1.981853 GGCCGCTTGGGATCCAAAA 60.982 57.895 15.23 6.51 43.44 2.44
726 728 1.215382 GCCGCTTGGGATCCAAAAC 59.785 57.895 15.23 2.66 43.44 2.43
727 729 1.890174 CCGCTTGGGATCCAAAACC 59.110 57.895 15.23 1.56 43.44 3.27
728 730 0.897863 CCGCTTGGGATCCAAAACCA 60.898 55.000 15.23 0.00 43.44 3.67
729 731 1.185315 CGCTTGGGATCCAAAACCAT 58.815 50.000 15.23 0.00 43.44 3.55
730 732 1.135024 CGCTTGGGATCCAAAACCATG 60.135 52.381 15.23 5.37 43.44 3.66
731 733 1.207811 GCTTGGGATCCAAAACCATGG 59.792 52.381 15.23 11.19 43.44 3.66
740 742 0.171007 CAAAACCATGGCGCCTACTG 59.829 55.000 29.70 20.97 0.00 2.74
744 746 0.464373 ACCATGGCGCCTACTGAATG 60.464 55.000 29.70 20.66 0.00 2.67
790 792 2.775418 TCCAGAATCCATTGGCTCCTA 58.225 47.619 0.00 0.00 34.38 2.94
919 922 7.603784 GCAGAAATAAATCATGTTCCAAAAGGT 59.396 33.333 0.00 0.00 0.00 3.50
942 945 8.097662 AGGTATAGGAAAACTGAAGTTTCTGAG 58.902 37.037 8.80 0.00 46.47 3.35
990 993 5.449107 AATGGAAGTGATAATGCTGATGC 57.551 39.130 0.00 0.00 40.20 3.91
1063 1067 9.171877 GGAGTCTTATTCTGAACAGATTGAAAT 57.828 33.333 5.34 0.00 37.29 2.17
1072 1076 1.612950 ACAGATTGAAATGTGCGGCAA 59.387 42.857 3.23 0.00 33.33 4.52
1107 1111 0.657368 CAGTGCTCGCGGACAAAAAC 60.657 55.000 6.13 0.00 33.37 2.43
1123 1127 7.651704 CGGACAAAAACCATCTAAAAGAATTGT 59.348 33.333 0.00 0.00 0.00 2.71
1153 1157 4.164221 AGTGGACTGAACAAAGAGAGGAAA 59.836 41.667 0.00 0.00 0.00 3.13
1158 1162 7.228706 TGGACTGAACAAAGAGAGGAAAAATAC 59.771 37.037 0.00 0.00 0.00 1.89
1170 1177 8.440771 AGAGAGGAAAAATACCAAGAAGAAGAA 58.559 33.333 0.00 0.00 0.00 2.52
1175 1182 9.464714 GGAAAAATACCAAGAAGAAGAAGTTTC 57.535 33.333 0.00 0.00 0.00 2.78
1210 1217 4.938226 GTGTCTTTGAGCAGCTAATACCTT 59.062 41.667 0.00 0.00 0.00 3.50
1632 1642 0.880278 TGTCACTGCTGCCTCGTTTC 60.880 55.000 0.00 0.00 0.00 2.78
1955 1968 2.116125 GGTGCCTGGGCTTCAAGT 59.884 61.111 13.05 0.00 42.51 3.16
1992 2005 4.955811 TCATGGCGAATACCTAGATGTT 57.044 40.909 0.00 0.00 0.00 2.71
2021 2034 4.184629 CTGTCTACCAGTTAGATGGCAAC 58.815 47.826 0.00 0.00 44.80 4.17
2022 2035 4.322725 CTGTCTACCAGTTAGATGGCAACA 60.323 45.833 0.00 0.00 44.80 3.33
2024 2037 8.468756 CTGTCTACCAGTTAGATGGCAACACT 62.469 46.154 0.00 0.00 44.80 3.55
2055 2069 8.306761 CAAGGTATGACACTGCATATATACTGA 58.693 37.037 0.00 0.00 33.67 3.41
2063 2077 7.508687 ACACTGCATATATACTGATTGGACAA 58.491 34.615 0.00 0.00 0.00 3.18
2100 2114 6.255670 TCGTTGATTCTCTGAACCATAATTCG 59.744 38.462 0.00 0.00 0.00 3.34
2149 2176 7.201679 GCTTCATCATATTGGGTAGATGCATAC 60.202 40.741 0.00 0.00 38.15 2.39
2218 2266 7.765307 AGATCAATTGTGATTGTACATGTTCC 58.235 34.615 2.30 0.00 44.83 3.62
2219 2267 7.613022 AGATCAATTGTGATTGTACATGTTCCT 59.387 33.333 2.30 0.00 44.83 3.36
2264 2312 1.596260 CATGGCTGTAGATTGCAGTCG 59.404 52.381 3.29 0.00 41.10 4.18
2268 2316 2.416836 GGCTGTAGATTGCAGTCGTACA 60.417 50.000 15.45 15.45 36.42 2.90
2269 2317 3.250744 GCTGTAGATTGCAGTCGTACAA 58.749 45.455 16.37 0.00 36.42 2.41
2302 2350 5.171476 AGTGTTGTATAGCACTGCTGTAAG 58.829 41.667 14.15 0.00 45.17 2.34
2308 2356 1.233019 AGCACTGCTGTAAGTTGCTG 58.767 50.000 1.67 0.00 37.57 4.41
2309 2357 0.386478 GCACTGCTGTAAGTTGCTGC 60.386 55.000 14.46 14.46 35.30 5.25
2310 2358 1.233019 CACTGCTGTAAGTTGCTGCT 58.767 50.000 20.19 2.31 35.30 4.24
2331 2379 4.487948 CTTATGTGTGCATTGGAAACCAG 58.512 43.478 0.00 0.00 36.58 4.00
2352 2400 6.166279 CCAGTACTGTTGCTTAGATTCTCAA 58.834 40.000 21.18 0.00 0.00 3.02
2353 2401 6.650807 CCAGTACTGTTGCTTAGATTCTCAAA 59.349 38.462 21.18 0.00 0.00 2.69
2354 2402 7.335422 CCAGTACTGTTGCTTAGATTCTCAAAT 59.665 37.037 21.18 0.00 0.00 2.32
2355 2403 8.386606 CAGTACTGTTGCTTAGATTCTCAAATC 58.613 37.037 15.06 0.00 41.43 2.17
2459 2507 3.081061 TGACATGTGTGCCTCCATAAAC 58.919 45.455 1.15 0.00 0.00 2.01
2518 2566 2.790433 TGCTGAGACAAACAATACCCC 58.210 47.619 0.00 0.00 0.00 4.95
2530 2578 5.400066 AACAATACCCCTGTTTTGTATGC 57.600 39.130 2.73 0.00 43.12 3.14
2535 2583 1.302383 CCCTGTTTTGTATGCGCGGA 61.302 55.000 8.83 5.00 0.00 5.54
2688 2743 6.441088 ACTCTTCTTCCTATGGTTTGTTCT 57.559 37.500 0.00 0.00 0.00 3.01
2691 2746 6.702329 TCTTCTTCCTATGGTTTGTTCTCTC 58.298 40.000 0.00 0.00 0.00 3.20
2755 2810 1.594293 CCACAGTTCGCCTTGACGT 60.594 57.895 0.00 0.00 0.00 4.34
2756 2811 1.157870 CCACAGTTCGCCTTGACGTT 61.158 55.000 0.00 0.00 0.00 3.99
2757 2812 0.042188 CACAGTTCGCCTTGACGTTG 60.042 55.000 0.00 0.00 0.00 4.10
2758 2813 0.179094 ACAGTTCGCCTTGACGTTGA 60.179 50.000 0.00 0.00 0.00 3.18
2759 2814 0.232303 CAGTTCGCCTTGACGTTGAC 59.768 55.000 0.00 0.00 0.00 3.18
2760 2815 1.200839 GTTCGCCTTGACGTTGACG 59.799 57.895 1.41 1.41 46.33 4.35
2886 2954 3.369756 TGCAACGTATCGAATTTGGTCTC 59.630 43.478 0.00 0.00 0.00 3.36
2892 2960 6.728200 ACGTATCGAATTTGGTCTCGTAATA 58.272 36.000 7.15 0.00 36.46 0.98
2941 3010 4.977963 CCTTTGCTGTACTGAAAATGTGTG 59.022 41.667 6.38 0.00 0.00 3.82
2942 3011 5.221028 CCTTTGCTGTACTGAAAATGTGTGA 60.221 40.000 6.38 0.00 0.00 3.58
2943 3012 6.389830 TTTGCTGTACTGAAAATGTGTGAT 57.610 33.333 3.61 0.00 0.00 3.06
2944 3013 6.389830 TTGCTGTACTGAAAATGTGTGATT 57.610 33.333 3.61 0.00 0.00 2.57
2945 3014 5.761003 TGCTGTACTGAAAATGTGTGATTG 58.239 37.500 3.61 0.00 0.00 2.67
2946 3015 4.618489 GCTGTACTGAAAATGTGTGATTGC 59.382 41.667 3.61 0.00 0.00 3.56
2947 3016 4.782156 TGTACTGAAAATGTGTGATTGCG 58.218 39.130 0.00 0.00 0.00 4.85
2948 3017 4.513318 TGTACTGAAAATGTGTGATTGCGA 59.487 37.500 0.00 0.00 0.00 5.10
2949 3018 4.771590 ACTGAAAATGTGTGATTGCGAT 57.228 36.364 0.00 0.00 0.00 4.58
2950 3019 4.478699 ACTGAAAATGTGTGATTGCGATG 58.521 39.130 0.00 0.00 0.00 3.84
2951 3020 3.835779 TGAAAATGTGTGATTGCGATGG 58.164 40.909 0.00 0.00 0.00 3.51
2952 3021 3.505293 TGAAAATGTGTGATTGCGATGGA 59.495 39.130 0.00 0.00 0.00 3.41
2953 3022 4.158209 TGAAAATGTGTGATTGCGATGGAT 59.842 37.500 0.00 0.00 0.00 3.41
2954 3023 3.703286 AATGTGTGATTGCGATGGATG 57.297 42.857 0.00 0.00 0.00 3.51
2955 3024 0.734309 TGTGTGATTGCGATGGATGC 59.266 50.000 0.00 0.00 0.00 3.91
2956 3025 0.734309 GTGTGATTGCGATGGATGCA 59.266 50.000 0.00 0.00 41.38 3.96
2957 3026 1.335810 GTGTGATTGCGATGGATGCAT 59.664 47.619 0.00 0.00 42.84 3.96
2958 3027 1.605232 TGTGATTGCGATGGATGCATC 59.395 47.619 18.81 18.81 42.84 3.91
2959 3028 1.878088 GTGATTGCGATGGATGCATCT 59.122 47.619 25.28 7.44 42.84 2.90
2960 3029 2.292569 GTGATTGCGATGGATGCATCTT 59.707 45.455 25.28 13.82 42.84 2.40
2961 3030 3.499537 GTGATTGCGATGGATGCATCTTA 59.500 43.478 25.28 15.41 42.84 2.10
2962 3031 3.499537 TGATTGCGATGGATGCATCTTAC 59.500 43.478 25.28 14.97 42.84 2.34
2963 3032 1.882912 TGCGATGGATGCATCTTACC 58.117 50.000 25.28 10.80 37.44 2.85
2964 3033 1.417517 TGCGATGGATGCATCTTACCT 59.582 47.619 25.28 6.68 37.44 3.08
2965 3034 1.802960 GCGATGGATGCATCTTACCTG 59.197 52.381 25.28 12.06 0.00 4.00
2966 3035 1.802960 CGATGGATGCATCTTACCTGC 59.197 52.381 25.28 8.17 40.10 4.85
2967 3036 1.802960 GATGGATGCATCTTACCTGCG 59.197 52.381 25.28 0.00 42.62 5.18
2968 3037 0.541392 TGGATGCATCTTACCTGCGT 59.459 50.000 25.28 0.00 42.62 5.24
2969 3038 1.065491 TGGATGCATCTTACCTGCGTT 60.065 47.619 25.28 0.00 42.62 4.84
2970 3039 2.169561 TGGATGCATCTTACCTGCGTTA 59.830 45.455 25.28 0.00 42.62 3.18
2971 3040 3.202906 GGATGCATCTTACCTGCGTTAA 58.797 45.455 25.28 0.00 42.62 2.01
2972 3041 3.815401 GGATGCATCTTACCTGCGTTAAT 59.185 43.478 25.28 0.00 42.62 1.40
2973 3042 4.275936 GGATGCATCTTACCTGCGTTAATT 59.724 41.667 25.28 0.00 42.62 1.40
2974 3043 5.468746 GGATGCATCTTACCTGCGTTAATTA 59.531 40.000 25.28 0.00 42.62 1.40
2975 3044 5.984233 TGCATCTTACCTGCGTTAATTAG 57.016 39.130 0.00 0.00 42.62 1.73
2976 3045 4.272504 TGCATCTTACCTGCGTTAATTAGC 59.727 41.667 0.00 0.00 42.62 3.09
2977 3046 4.511826 GCATCTTACCTGCGTTAATTAGCT 59.488 41.667 0.00 0.00 0.00 3.32
2978 3047 5.694910 GCATCTTACCTGCGTTAATTAGCTA 59.305 40.000 0.00 0.00 0.00 3.32
2979 3048 6.369065 GCATCTTACCTGCGTTAATTAGCTAT 59.631 38.462 0.00 0.00 0.00 2.97
2980 3049 7.544566 GCATCTTACCTGCGTTAATTAGCTATA 59.455 37.037 0.00 0.00 0.00 1.31
2981 3050 9.587772 CATCTTACCTGCGTTAATTAGCTATAT 57.412 33.333 0.00 0.00 0.00 0.86
2982 3051 8.981724 TCTTACCTGCGTTAATTAGCTATATG 57.018 34.615 0.00 0.00 0.00 1.78
2983 3052 8.033038 TCTTACCTGCGTTAATTAGCTATATGG 58.967 37.037 0.00 0.00 0.00 2.74
2984 3053 4.935808 ACCTGCGTTAATTAGCTATATGGC 59.064 41.667 2.23 2.23 0.00 4.40
2985 3054 4.332819 CCTGCGTTAATTAGCTATATGGCC 59.667 45.833 7.54 0.00 0.00 5.36
2986 3055 5.160607 TGCGTTAATTAGCTATATGGCCT 57.839 39.130 7.54 0.00 0.00 5.19
2987 3056 6.288941 TGCGTTAATTAGCTATATGGCCTA 57.711 37.500 7.54 0.00 0.00 3.93
2988 3057 6.884832 TGCGTTAATTAGCTATATGGCCTAT 58.115 36.000 7.54 1.96 0.00 2.57
2989 3058 6.761242 TGCGTTAATTAGCTATATGGCCTATG 59.239 38.462 7.54 0.00 0.00 2.23
2990 3059 6.202954 GCGTTAATTAGCTATATGGCCTATGG 59.797 42.308 7.54 2.80 0.00 2.74
2991 3060 6.706270 CGTTAATTAGCTATATGGCCTATGGG 59.294 42.308 7.54 0.00 0.00 4.00
2992 3061 7.418597 CGTTAATTAGCTATATGGCCTATGGGA 60.419 40.741 7.54 0.00 33.58 4.37
2993 3062 6.908526 AATTAGCTATATGGCCTATGGGAA 57.091 37.500 7.54 0.00 33.58 3.97
2994 3063 7.471610 AATTAGCTATATGGCCTATGGGAAT 57.528 36.000 7.54 0.00 33.58 3.01
2995 3064 4.785346 AGCTATATGGCCTATGGGAATG 57.215 45.455 7.54 0.00 33.58 2.67
2996 3065 3.117738 AGCTATATGGCCTATGGGAATGC 60.118 47.826 7.54 0.00 33.58 3.56
2997 3066 2.425143 ATATGGCCTATGGGAATGCG 57.575 50.000 3.32 0.00 33.58 4.73
2998 3067 0.322456 TATGGCCTATGGGAATGCGC 60.322 55.000 3.32 0.00 33.58 6.09
2999 3068 2.072874 ATGGCCTATGGGAATGCGCT 62.073 55.000 9.73 0.00 33.58 5.92
3000 3069 1.968540 GGCCTATGGGAATGCGCTC 60.969 63.158 9.73 0.00 33.58 5.03
3001 3070 1.968540 GCCTATGGGAATGCGCTCC 60.969 63.158 9.73 8.26 33.58 4.70
3002 3071 1.451504 CCTATGGGAATGCGCTCCA 59.548 57.895 16.67 14.65 37.20 3.86
3003 3072 0.037303 CCTATGGGAATGCGCTCCAT 59.963 55.000 21.59 21.59 43.08 3.41
3004 3073 1.546323 CCTATGGGAATGCGCTCCATT 60.546 52.381 22.52 10.16 46.57 3.16
3010 3079 3.869623 AATGCGCTCCATTCACTCT 57.130 47.368 9.73 0.00 40.02 3.24
3011 3080 1.376543 AATGCGCTCCATTCACTCTG 58.623 50.000 9.73 0.00 40.02 3.35
3012 3081 0.251354 ATGCGCTCCATTCACTCTGT 59.749 50.000 9.73 0.00 0.00 3.41
3013 3082 0.035317 TGCGCTCCATTCACTCTGTT 59.965 50.000 9.73 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.179067 AAAACGCTCTCCACACCGAA 60.179 50.000 0.00 0.00 0.00 4.30
443 444 3.823330 CGCCCGGCTACTTCGAGT 61.823 66.667 8.05 0.00 0.00 4.18
553 555 4.018490 TCTTGTATGCTGCACCAAATCAT 58.982 39.130 3.57 0.00 0.00 2.45
565 567 9.191479 GTACCCTCATATATACTCTTGTATGCT 57.809 37.037 0.00 0.00 39.49 3.79
583 585 1.071071 CCAAGTCGGTTTGTACCCTCA 59.929 52.381 0.00 0.00 41.75 3.86
667 669 1.127213 CGAAATTCACGGTTACCACGG 59.873 52.381 1.13 0.00 35.23 4.94
668 670 1.462869 GCGAAATTCACGGTTACCACG 60.463 52.381 1.13 0.00 37.36 4.94
669 671 1.802365 AGCGAAATTCACGGTTACCAC 59.198 47.619 1.13 0.00 38.27 4.16
670 672 1.801771 CAGCGAAATTCACGGTTACCA 59.198 47.619 1.13 0.00 39.38 3.25
671 673 1.465187 GCAGCGAAATTCACGGTTACC 60.465 52.381 6.90 0.00 39.38 2.85
672 674 1.465187 GGCAGCGAAATTCACGGTTAC 60.465 52.381 6.90 3.76 39.38 2.50
673 675 0.800012 GGCAGCGAAATTCACGGTTA 59.200 50.000 6.90 0.00 39.38 2.85
674 676 1.579429 GGCAGCGAAATTCACGGTT 59.421 52.632 6.90 0.00 39.38 4.44
675 677 2.332654 GGGCAGCGAAATTCACGGT 61.333 57.895 4.35 4.35 42.02 4.83
676 678 2.485122 GGGCAGCGAAATTCACGG 59.515 61.111 7.02 0.00 0.00 4.94
677 679 1.982073 GAGGGGCAGCGAAATTCACG 61.982 60.000 0.00 1.48 0.00 4.35
678 680 1.803289 GAGGGGCAGCGAAATTCAC 59.197 57.895 0.00 0.00 0.00 3.18
679 681 1.745115 CGAGGGGCAGCGAAATTCA 60.745 57.895 0.00 0.00 0.00 2.57
680 682 1.432270 CTCGAGGGGCAGCGAAATTC 61.432 60.000 3.91 0.00 35.95 2.17
681 683 1.450312 CTCGAGGGGCAGCGAAATT 60.450 57.895 3.91 0.00 35.95 1.82
682 684 1.899437 TTCTCGAGGGGCAGCGAAAT 61.899 55.000 13.56 0.00 35.95 2.17
683 685 2.107041 TTTCTCGAGGGGCAGCGAAA 62.107 55.000 13.56 0.11 35.95 3.46
684 686 2.107041 TTTTCTCGAGGGGCAGCGAA 62.107 55.000 13.56 0.00 35.95 4.70
685 687 2.107041 TTTTTCTCGAGGGGCAGCGA 62.107 55.000 13.56 0.00 35.01 4.93
686 688 1.671054 TTTTTCTCGAGGGGCAGCG 60.671 57.895 13.56 0.00 0.00 5.18
687 689 4.397348 TTTTTCTCGAGGGGCAGC 57.603 55.556 13.56 0.00 0.00 5.25
701 703 1.229177 ATCCCAAGCGGCCCTTTTT 60.229 52.632 0.00 0.00 0.00 1.94
702 704 1.682344 GATCCCAAGCGGCCCTTTT 60.682 57.895 0.00 0.00 0.00 2.27
703 705 2.043953 GATCCCAAGCGGCCCTTT 60.044 61.111 0.00 0.00 0.00 3.11
704 706 4.129148 GGATCCCAAGCGGCCCTT 62.129 66.667 0.00 0.00 0.00 3.95
706 708 3.955543 TTTGGATCCCAAGCGGCCC 62.956 63.158 9.90 0.00 44.84 5.80
707 709 1.981853 TTTTGGATCCCAAGCGGCC 60.982 57.895 9.90 0.00 44.84 6.13
708 710 1.215382 GTTTTGGATCCCAAGCGGC 59.785 57.895 9.90 0.00 44.84 6.53
709 711 0.897863 TGGTTTTGGATCCCAAGCGG 60.898 55.000 9.90 0.00 44.84 5.52
710 712 1.135024 CATGGTTTTGGATCCCAAGCG 60.135 52.381 9.90 0.00 44.84 4.68
711 713 1.207811 CCATGGTTTTGGATCCCAAGC 59.792 52.381 9.90 12.21 44.84 4.01
712 714 1.207811 GCCATGGTTTTGGATCCCAAG 59.792 52.381 14.67 0.00 44.84 3.61
713 715 1.274712 GCCATGGTTTTGGATCCCAA 58.725 50.000 14.67 0.59 42.29 4.12
714 716 0.969917 CGCCATGGTTTTGGATCCCA 60.970 55.000 14.67 0.00 39.25 4.37
715 717 1.815866 CGCCATGGTTTTGGATCCC 59.184 57.895 14.67 0.00 39.25 3.85
716 718 1.141665 GCGCCATGGTTTTGGATCC 59.858 57.895 14.67 4.20 39.25 3.36
717 719 1.141665 GGCGCCATGGTTTTGGATC 59.858 57.895 24.80 0.00 39.25 3.36
718 720 0.033601 TAGGCGCCATGGTTTTGGAT 60.034 50.000 31.54 5.27 39.25 3.41
719 721 0.963355 GTAGGCGCCATGGTTTTGGA 60.963 55.000 31.54 0.00 39.25 3.53
720 722 0.965363 AGTAGGCGCCATGGTTTTGG 60.965 55.000 31.54 0.00 39.94 3.28
721 723 0.171007 CAGTAGGCGCCATGGTTTTG 59.829 55.000 31.54 12.59 0.00 2.44
722 724 0.037590 TCAGTAGGCGCCATGGTTTT 59.962 50.000 31.54 8.51 0.00 2.43
723 725 0.037590 TTCAGTAGGCGCCATGGTTT 59.962 50.000 31.54 9.39 0.00 3.27
724 726 0.255890 ATTCAGTAGGCGCCATGGTT 59.744 50.000 31.54 10.27 0.00 3.67
725 727 0.464373 CATTCAGTAGGCGCCATGGT 60.464 55.000 31.54 10.73 0.00 3.55
726 728 0.464373 ACATTCAGTAGGCGCCATGG 60.464 55.000 31.54 15.17 0.00 3.66
727 729 2.138320 CTACATTCAGTAGGCGCCATG 58.862 52.381 31.54 23.62 45.28 3.66
728 730 2.533266 CTACATTCAGTAGGCGCCAT 57.467 50.000 31.54 16.46 45.28 4.40
942 945 5.163754 CCAACAGGAAATCCTCGTAAATGAC 60.164 44.000 0.00 0.00 46.65 3.06
990 993 2.025981 TCCAACTCCCATCCATCTTGTG 60.026 50.000 0.00 0.00 0.00 3.33
1063 1067 1.950216 TGAACTACAATTTGCCGCACA 59.050 42.857 0.00 0.00 0.00 4.57
1072 1076 6.620733 GCGAGCACTGTATTTGAACTACAATT 60.621 38.462 0.00 0.00 38.36 2.32
1153 1157 8.533569 TTGGAAACTTCTTCTTCTTGGTATTT 57.466 30.769 0.00 0.00 0.00 1.40
1158 1162 5.225642 GCATTGGAAACTTCTTCTTCTTGG 58.774 41.667 0.00 0.00 0.00 3.61
1170 1177 0.609131 CACCCTCGGCATTGGAAACT 60.609 55.000 0.00 0.00 0.00 2.66
1175 1182 0.609131 AAAGACACCCTCGGCATTGG 60.609 55.000 0.00 0.00 0.00 3.16
1210 1217 1.000385 CAAGGCTTCCAAATTGCGTGA 60.000 47.619 0.00 0.00 0.00 4.35
1384 1391 4.380531 ACCTTGGTAAGTGCATATGATCG 58.619 43.478 6.97 0.00 0.00 3.69
1596 1606 1.213537 CAACCTTGCAGATTGGGCG 59.786 57.895 0.00 0.00 0.00 6.13
1632 1642 2.661594 TGTTCGAGTCTCAACATCACG 58.338 47.619 11.49 0.00 0.00 4.35
1684 1694 0.472471 TTGGTGGTGTCCTCTCCAAC 59.528 55.000 0.00 0.00 43.03 3.77
1955 1968 0.534877 ATGAAGTCGTTGGTGCTGCA 60.535 50.000 0.00 0.00 0.00 4.41
1981 1994 4.703575 AGACAGCGTGTAAACATCTAGGTA 59.296 41.667 0.00 0.00 0.00 3.08
2021 2034 1.806542 GTGTCATACCTTGTGCCAGTG 59.193 52.381 0.00 0.00 0.00 3.66
2022 2035 1.699634 AGTGTCATACCTTGTGCCAGT 59.300 47.619 0.00 0.00 0.00 4.00
2024 2037 1.881925 GCAGTGTCATACCTTGTGCCA 60.882 52.381 0.00 0.00 0.00 4.92
2025 2038 0.804989 GCAGTGTCATACCTTGTGCC 59.195 55.000 0.00 0.00 0.00 5.01
2067 2081 7.659799 TGGTTCAGAGAATCAACGATAGAAAAA 59.340 33.333 0.00 0.00 37.82 1.94
2077 2091 7.308782 ACGAATTATGGTTCAGAGAATCAAC 57.691 36.000 0.00 0.00 37.82 3.18
2138 2165 7.852454 CACAACATGTACAATGTATGCATCTAC 59.148 37.037 0.19 0.00 33.50 2.59
2219 2267 6.239345 GGGCATCTACTAAAGCTAGCTCTTTA 60.239 42.308 19.65 12.89 37.46 1.85
2268 2316 9.734984 AGTGCTATACAACACTTAATACCTTTT 57.265 29.630 0.00 0.00 44.59 2.27
2269 2317 9.162764 CAGTGCTATACAACACTTAATACCTTT 57.837 33.333 0.00 0.00 44.59 3.11
2290 2338 0.386478 GCAGCAACTTACAGCAGTGC 60.386 55.000 7.13 7.13 0.00 4.40
2302 2350 2.642139 ATGCACACATAAGCAGCAAC 57.358 45.000 0.00 0.00 44.94 4.17
2308 2356 3.253230 GGTTTCCAATGCACACATAAGC 58.747 45.455 0.00 0.00 34.62 3.09
2309 2357 4.022068 ACTGGTTTCCAATGCACACATAAG 60.022 41.667 0.00 0.00 34.62 1.73
2310 2358 3.894427 ACTGGTTTCCAATGCACACATAA 59.106 39.130 0.00 0.00 34.62 1.90
2395 2443 8.019094 TGCATATACACGTACATACATGTAGAC 58.981 37.037 11.91 8.24 43.32 2.59
2403 2451 5.444613 GCTGCATGCATATACACGTACATAC 60.445 44.000 22.97 0.00 42.31 2.39
2404 2452 4.625311 GCTGCATGCATATACACGTACATA 59.375 41.667 22.97 0.00 42.31 2.29
2405 2453 3.433274 GCTGCATGCATATACACGTACAT 59.567 43.478 22.97 0.00 42.31 2.29
2406 2454 2.799978 GCTGCATGCATATACACGTACA 59.200 45.455 22.97 0.00 42.31 2.90
2407 2455 3.439932 GCTGCATGCATATACACGTAC 57.560 47.619 22.97 0.00 42.31 3.67
2518 2566 1.196808 ACTTCCGCGCATACAAAACAG 59.803 47.619 8.75 0.00 0.00 3.16
2530 2578 1.298157 TGGAATCTTGCACTTCCGCG 61.298 55.000 14.12 0.00 43.22 6.46
2535 2583 5.594926 CTTCAGTTTTGGAATCTTGCACTT 58.405 37.500 0.00 0.00 0.00 3.16
2755 2810 2.352388 GCTTAGTATGTTGCCCGTCAA 58.648 47.619 0.00 0.00 0.00 3.18
2756 2811 1.406341 GGCTTAGTATGTTGCCCGTCA 60.406 52.381 0.00 0.00 39.49 4.35
2757 2812 1.134491 AGGCTTAGTATGTTGCCCGTC 60.134 52.381 0.00 0.00 45.94 4.79
2758 2813 0.909623 AGGCTTAGTATGTTGCCCGT 59.090 50.000 0.00 0.00 45.94 5.28
2759 2814 1.299541 CAGGCTTAGTATGTTGCCCG 58.700 55.000 0.00 0.00 45.94 6.13
2760 2815 2.289565 GACAGGCTTAGTATGTTGCCC 58.710 52.381 0.00 0.00 45.94 5.36
2947 3016 1.802960 CGCAGGTAAGATGCATCCATC 59.197 52.381 23.06 11.73 46.61 3.51
2948 3017 1.141657 ACGCAGGTAAGATGCATCCAT 59.858 47.619 23.06 14.71 44.05 3.41
2949 3018 0.541392 ACGCAGGTAAGATGCATCCA 59.459 50.000 23.06 8.79 44.05 3.41
2950 3019 1.668419 AACGCAGGTAAGATGCATCC 58.332 50.000 23.06 8.60 44.05 3.51
2951 3020 5.424121 AATTAACGCAGGTAAGATGCATC 57.576 39.130 19.37 19.37 44.05 3.91
2952 3021 5.049405 GCTAATTAACGCAGGTAAGATGCAT 60.049 40.000 0.00 0.00 44.05 3.96
2953 3022 4.272504 GCTAATTAACGCAGGTAAGATGCA 59.727 41.667 0.00 0.00 44.05 3.96
2954 3023 4.511826 AGCTAATTAACGCAGGTAAGATGC 59.488 41.667 0.00 0.00 40.35 3.91
2955 3024 7.891183 ATAGCTAATTAACGCAGGTAAGATG 57.109 36.000 0.00 0.00 0.00 2.90
2956 3025 9.587772 CATATAGCTAATTAACGCAGGTAAGAT 57.412 33.333 0.00 0.00 0.00 2.40
2957 3026 8.033038 CCATATAGCTAATTAACGCAGGTAAGA 58.967 37.037 0.00 0.00 0.00 2.10
2958 3027 7.201530 GCCATATAGCTAATTAACGCAGGTAAG 60.202 40.741 0.00 0.00 0.00 2.34
2959 3028 6.592607 GCCATATAGCTAATTAACGCAGGTAA 59.407 38.462 0.00 0.00 0.00 2.85
2960 3029 6.103997 GCCATATAGCTAATTAACGCAGGTA 58.896 40.000 0.00 0.00 0.00 3.08
2961 3030 4.935808 GCCATATAGCTAATTAACGCAGGT 59.064 41.667 0.00 0.00 0.00 4.00
2962 3031 4.332819 GGCCATATAGCTAATTAACGCAGG 59.667 45.833 0.00 0.00 0.00 4.85
2963 3032 5.178797 AGGCCATATAGCTAATTAACGCAG 58.821 41.667 5.01 0.00 0.00 5.18
2964 3033 5.160607 AGGCCATATAGCTAATTAACGCA 57.839 39.130 5.01 0.00 0.00 5.24
2965 3034 6.202954 CCATAGGCCATATAGCTAATTAACGC 59.797 42.308 5.01 0.00 0.00 4.84
2966 3035 6.706270 CCCATAGGCCATATAGCTAATTAACG 59.294 42.308 5.01 0.00 0.00 3.18
2967 3036 7.802117 TCCCATAGGCCATATAGCTAATTAAC 58.198 38.462 5.01 0.00 0.00 2.01
2968 3037 8.400619 TTCCCATAGGCCATATAGCTAATTAA 57.599 34.615 5.01 0.00 0.00 1.40
2969 3038 8.439971 CATTCCCATAGGCCATATAGCTAATTA 58.560 37.037 5.01 0.00 0.00 1.40
2970 3039 6.908526 TTCCCATAGGCCATATAGCTAATT 57.091 37.500 5.01 0.00 0.00 1.40
2971 3040 6.692526 GCATTCCCATAGGCCATATAGCTAAT 60.693 42.308 5.01 0.00 0.00 1.73
2972 3041 5.397899 GCATTCCCATAGGCCATATAGCTAA 60.398 44.000 5.01 0.00 0.00 3.09
2973 3042 4.103153 GCATTCCCATAGGCCATATAGCTA 59.897 45.833 5.01 0.00 0.00 3.32
2974 3043 3.117738 GCATTCCCATAGGCCATATAGCT 60.118 47.826 5.01 0.00 0.00 3.32
2975 3044 3.217626 GCATTCCCATAGGCCATATAGC 58.782 50.000 5.01 0.00 0.00 2.97
2976 3045 3.470709 CGCATTCCCATAGGCCATATAG 58.529 50.000 5.01 0.00 0.00 1.31
2977 3046 2.421388 GCGCATTCCCATAGGCCATATA 60.421 50.000 5.01 0.00 0.00 0.86
2978 3047 1.683011 GCGCATTCCCATAGGCCATAT 60.683 52.381 5.01 0.00 0.00 1.78
2979 3048 0.322456 GCGCATTCCCATAGGCCATA 60.322 55.000 5.01 0.00 0.00 2.74
2980 3049 1.604593 GCGCATTCCCATAGGCCAT 60.605 57.895 5.01 0.00 0.00 4.40
2981 3050 2.203337 GCGCATTCCCATAGGCCA 60.203 61.111 5.01 0.00 0.00 5.36
2982 3051 1.968540 GAGCGCATTCCCATAGGCC 60.969 63.158 11.47 0.00 0.00 5.19
2983 3052 1.968540 GGAGCGCATTCCCATAGGC 60.969 63.158 11.47 0.00 0.00 3.93
2984 3053 0.037303 ATGGAGCGCATTCCCATAGG 59.963 55.000 11.47 0.00 38.79 2.57
2985 3054 1.808945 GAATGGAGCGCATTCCCATAG 59.191 52.381 19.07 0.00 39.58 2.23
2986 3055 1.142667 TGAATGGAGCGCATTCCCATA 59.857 47.619 19.07 6.74 39.58 2.74
2987 3056 0.106569 TGAATGGAGCGCATTCCCAT 60.107 50.000 11.47 13.71 42.08 4.00
2988 3057 1.031571 GTGAATGGAGCGCATTCCCA 61.032 55.000 11.47 11.83 38.04 4.37
2989 3058 0.749454 AGTGAATGGAGCGCATTCCC 60.749 55.000 11.47 5.63 38.04 3.97
2990 3059 0.659957 GAGTGAATGGAGCGCATTCC 59.340 55.000 11.47 9.86 38.04 3.01
2991 3060 1.329906 CAGAGTGAATGGAGCGCATTC 59.670 52.381 11.47 11.19 38.98 2.67
2992 3061 1.339438 ACAGAGTGAATGGAGCGCATT 60.339 47.619 11.47 0.00 0.00 3.56
2993 3062 0.251354 ACAGAGTGAATGGAGCGCAT 59.749 50.000 11.47 0.00 0.00 4.73
2994 3063 0.035317 AACAGAGTGAATGGAGCGCA 59.965 50.000 11.47 0.00 0.00 6.09
2995 3064 2.846371 AACAGAGTGAATGGAGCGC 58.154 52.632 0.00 0.00 0.00 5.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.