Multiple sequence alignment - TraesCS3D01G067600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G067600 chr3D 100.000 7136 0 0 1 7136 29889379 29882244 0.000000e+00 13178.0
1 TraesCS3D01G067600 chr3D 94.444 396 15 4 2275 2667 33706563 33706954 2.850000e-168 603.0
2 TraesCS3D01G067600 chr3D 92.421 409 22 6 2262 2667 52144037 52143635 6.210000e-160 575.0
3 TraesCS3D01G067600 chr3D 91.971 411 19 8 2253 2655 567951172 567951576 1.340000e-156 564.0
4 TraesCS3D01G067600 chr3D 94.034 352 18 2 2708 3057 33706953 33707303 1.360000e-146 531.0
5 TraesCS3D01G067600 chr3D 92.898 352 22 2 2708 3057 52143636 52143286 6.390000e-140 508.0
6 TraesCS3D01G067600 chr3D 88.514 296 23 7 882 1176 29931303 29931018 1.470000e-91 348.0
7 TraesCS3D01G067600 chr3D 85.629 167 23 1 41 206 285767228 285767394 2.650000e-39 174.0
8 TraesCS3D01G067600 chr3A 89.488 3672 233 68 2761 6374 40829924 40826348 0.000000e+00 4501.0
9 TraesCS3D01G067600 chr3A 87.687 1868 135 51 832 2670 40831764 40829963 0.000000e+00 2087.0
10 TraesCS3D01G067600 chr3A 94.599 574 27 2 3209 3781 94949755 94950325 0.000000e+00 885.0
11 TraesCS3D01G067600 chr3A 88.174 668 42 14 50 704 40841488 40840845 0.000000e+00 761.0
12 TraesCS3D01G067600 chr3A 77.246 501 60 26 6456 6907 40826333 40825838 1.990000e-60 244.0
13 TraesCS3D01G067600 chr3A 86.996 223 16 11 6890 7103 40825531 40825313 9.250000e-59 239.0
14 TraesCS3D01G067600 chr3A 80.420 286 14 15 886 1171 40849911 40849668 5.690000e-41 180.0
15 TraesCS3D01G067600 chr3A 86.250 160 21 1 41 199 509554620 509554779 9.520000e-39 172.0
16 TraesCS3D01G067600 chr3A 81.579 190 27 6 41 228 156361926 156362109 4.460000e-32 150.0
17 TraesCS3D01G067600 chr3A 76.216 185 37 6 48 227 546680441 546680623 2.740000e-14 91.6
18 TraesCS3D01G067600 chr3A 97.917 48 1 0 3734 3781 276963660 276963707 4.590000e-12 84.2
19 TraesCS3D01G067600 chr3B 93.247 2873 123 23 2858 5699 50797078 50794246 0.000000e+00 4165.0
20 TraesCS3D01G067600 chr3B 90.223 716 34 18 1 704 50800136 50799445 0.000000e+00 902.0
21 TraesCS3D01G067600 chr3B 84.703 961 82 30 5803 6745 50794234 50793321 0.000000e+00 900.0
22 TraesCS3D01G067600 chr3B 93.162 585 35 3 1614 2197 50798400 50797820 0.000000e+00 854.0
23 TraesCS3D01G067600 chr3B 83.846 520 21 26 864 1337 50799100 50798598 3.060000e-118 436.0
24 TraesCS3D01G067600 chr3B 91.279 172 12 2 2700 2868 50797429 50797258 1.550000e-56 231.0
25 TraesCS3D01G067600 chr3B 84.783 230 17 10 6901 7125 50793071 50792855 1.560000e-51 215.0
26 TraesCS3D01G067600 chr3B 86.250 160 21 1 41 199 644298172 644298331 9.520000e-39 172.0
27 TraesCS3D01G067600 chr3B 95.349 43 2 0 655 697 734494085 734494127 1.280000e-07 69.4
28 TraesCS3D01G067600 chr2A 92.889 675 28 7 2698 3360 427236275 427235609 0.000000e+00 963.0
29 TraesCS3D01G067600 chr2A 90.750 573 32 11 2695 3254 371156442 371155878 0.000000e+00 745.0
30 TraesCS3D01G067600 chr2A 91.477 352 26 3 2708 3057 529091717 529092066 1.390000e-131 481.0
31 TraesCS3D01G067600 chr2A 96.698 212 7 0 3491 3702 504922491 504922280 3.170000e-93 353.0
32 TraesCS3D01G067600 chr2A 79.487 234 34 10 451 681 710966862 710966640 3.450000e-33 154.0
33 TraesCS3D01G067600 chr2D 94.086 558 15 6 2813 3360 348937999 348938548 0.000000e+00 832.0
34 TraesCS3D01G067600 chr2D 93.548 558 17 10 2813 3360 517982819 517983367 0.000000e+00 813.0
35 TraesCS3D01G067600 chr2D 93.548 558 17 9 2813 3360 594990234 594989686 0.000000e+00 813.0
36 TraesCS3D01G067600 chr2D 92.271 414 18 9 2253 2658 594990635 594990228 6.210000e-160 575.0
37 TraesCS3D01G067600 chr7D 93.728 558 17 7 2813 3360 177197742 177198291 0.000000e+00 821.0
38 TraesCS3D01G067600 chr7D 92.214 411 18 8 2253 2655 278467115 278467519 2.890000e-158 569.0
39 TraesCS3D01G067600 chr7D 79.394 165 22 10 283 444 559297369 559297214 9.790000e-19 106.0
40 TraesCS3D01G067600 chr1D 93.728 558 17 6 2813 3360 164909721 164909172 0.000000e+00 821.0
41 TraesCS3D01G067600 chr1D 85.612 139 15 5 240 375 326251528 326251392 2.680000e-29 141.0
42 TraesCS3D01G067600 chr1D 80.000 185 34 3 427 611 108801537 108801356 4.490000e-27 134.0
43 TraesCS3D01G067600 chr5D 93.369 558 19 7 2813 3360 449366417 449366966 0.000000e+00 809.0
44 TraesCS3D01G067600 chr5D 77.778 378 52 16 41 397 497016968 497016602 3.370000e-48 204.0
45 TraesCS3D01G067600 chr5D 86.420 162 17 4 41 199 22457045 22457204 9.520000e-39 172.0
46 TraesCS3D01G067600 chr4B 93.178 557 20 6 2813 3359 523769334 523768786 0.000000e+00 802.0
47 TraesCS3D01G067600 chr4B 91.484 411 21 9 2256 2658 523769732 523769328 2.910000e-153 553.0
48 TraesCS3D01G067600 chr4B 80.804 224 36 6 451 672 588901570 588901352 1.230000e-37 169.0
49 TraesCS3D01G067600 chr4B 78.077 260 44 11 448 703 588901211 588900961 1.240000e-32 152.0
50 TraesCS3D01G067600 chr4A 92.652 558 23 5 2813 3360 220153956 220153407 0.000000e+00 787.0
51 TraesCS3D01G067600 chr4A 91.787 414 20 8 2253 2658 229716311 229715904 1.340000e-156 564.0
52 TraesCS3D01G067600 chr1A 91.304 414 22 8 2253 2658 89955198 89955605 2.910000e-153 553.0
53 TraesCS3D01G067600 chr1A 82.301 226 34 5 424 648 575655408 575655628 2.630000e-44 191.0
54 TraesCS3D01G067600 chr6B 97.778 270 6 0 2818 3087 73551198 73551467 3.900000e-127 466.0
55 TraesCS3D01G067600 chr6B 79.253 241 37 11 427 661 628844900 628844667 9.580000e-34 156.0
56 TraesCS3D01G067600 chr6B 82.320 181 28 4 48 226 711471052 711470874 3.450000e-33 154.0
57 TraesCS3D01G067600 chr6B 82.320 181 28 4 48 226 711471690 711471512 3.450000e-33 154.0
58 TraesCS3D01G067600 chr6B 81.538 195 24 10 435 623 580472864 580473052 4.460000e-32 150.0
59 TraesCS3D01G067600 chr5A 93.141 277 8 6 3087 3360 471655952 471656220 5.190000e-106 396.0
60 TraesCS3D01G067600 chr5A 82.243 214 32 5 20 230 435702688 435702478 5.690000e-41 180.0
61 TraesCS3D01G067600 chr5A 83.516 182 20 8 20 199 109950257 109950084 2.060000e-35 161.0
62 TraesCS3D01G067600 chr5A 80.193 207 34 6 230 433 456074916 456074714 1.600000e-31 148.0
63 TraesCS3D01G067600 chr5A 79.641 167 23 9 284 445 616543264 616543424 7.570000e-20 110.0
64 TraesCS3D01G067600 chrUn 83.598 189 26 3 20 206 260712130 260712315 9.520000e-39 172.0
65 TraesCS3D01G067600 chr1B 79.339 242 38 11 427 663 637395281 637395515 7.410000e-35 159.0
66 TraesCS3D01G067600 chr5B 77.068 266 52 7 439 701 28206771 28207030 2.070000e-30 145.0
67 TraesCS3D01G067600 chr5B 80.292 137 20 6 240 375 28206923 28207053 5.890000e-16 97.1
68 TraesCS3D01G067600 chr6D 77.869 244 42 7 437 673 322002784 322003022 2.680000e-29 141.0
69 TraesCS3D01G067600 chr6D 81.481 162 21 9 260 420 16608213 16608366 2.700000e-24 124.0
70 TraesCS3D01G067600 chr7B 79.651 172 23 11 278 444 136879286 136879450 5.850000e-21 113.0
71 TraesCS3D01G067600 chr6A 77.966 177 35 4 53 226 599893003 599893178 2.720000e-19 108.0
72 TraesCS3D01G067600 chr7A 96.296 54 1 1 3728 3781 551017515 551017463 3.550000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G067600 chr3D 29882244 29889379 7135 True 13178.000000 13178 100.00000 1 7136 1 chr3D.!!$R1 7135
1 TraesCS3D01G067600 chr3D 33706563 33707303 740 False 567.000000 603 94.23900 2275 3057 2 chr3D.!!$F3 782
2 TraesCS3D01G067600 chr3D 52143286 52144037 751 True 541.500000 575 92.65950 2262 3057 2 chr3D.!!$R3 795
3 TraesCS3D01G067600 chr3A 40825313 40831764 6451 True 1767.750000 4501 85.35425 832 7103 4 chr3A.!!$R3 6271
4 TraesCS3D01G067600 chr3A 94949755 94950325 570 False 885.000000 885 94.59900 3209 3781 1 chr3A.!!$F1 572
5 TraesCS3D01G067600 chr3A 40840845 40841488 643 True 761.000000 761 88.17400 50 704 1 chr3A.!!$R1 654
6 TraesCS3D01G067600 chr3B 50792855 50800136 7281 True 1100.428571 4165 88.74900 1 7125 7 chr3B.!!$R1 7124
7 TraesCS3D01G067600 chr2A 427235609 427236275 666 True 963.000000 963 92.88900 2698 3360 1 chr2A.!!$R2 662
8 TraesCS3D01G067600 chr2A 371155878 371156442 564 True 745.000000 745 90.75000 2695 3254 1 chr2A.!!$R1 559
9 TraesCS3D01G067600 chr2D 348937999 348938548 549 False 832.000000 832 94.08600 2813 3360 1 chr2D.!!$F1 547
10 TraesCS3D01G067600 chr2D 517982819 517983367 548 False 813.000000 813 93.54800 2813 3360 1 chr2D.!!$F2 547
11 TraesCS3D01G067600 chr2D 594989686 594990635 949 True 694.000000 813 92.90950 2253 3360 2 chr2D.!!$R1 1107
12 TraesCS3D01G067600 chr7D 177197742 177198291 549 False 821.000000 821 93.72800 2813 3360 1 chr7D.!!$F1 547
13 TraesCS3D01G067600 chr1D 164909172 164909721 549 True 821.000000 821 93.72800 2813 3360 1 chr1D.!!$R2 547
14 TraesCS3D01G067600 chr5D 449366417 449366966 549 False 809.000000 809 93.36900 2813 3360 1 chr5D.!!$F2 547
15 TraesCS3D01G067600 chr4B 523768786 523769732 946 True 677.500000 802 92.33100 2256 3359 2 chr4B.!!$R1 1103
16 TraesCS3D01G067600 chr4A 220153407 220153956 549 True 787.000000 787 92.65200 2813 3360 1 chr4A.!!$R1 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
289 302 0.033405 TCCCTACCTCTCACGGAAGG 60.033 60.000 0.00 0.00 0.00 3.46 F
357 370 0.095935 CTCGCAGAAGCAAATCCGTG 59.904 55.000 0.00 0.00 42.27 4.94 F
365 378 0.254178 AGCAAATCCGTGCCTCTCAT 59.746 50.000 0.00 0.00 46.14 2.90 F
1494 1795 0.461339 TTTCTACGGCCATTCCTCGC 60.461 55.000 2.24 0.00 0.00 5.03 F
1609 1913 0.609662 ATTTTGTGACATGGGCTGCC 59.390 50.000 11.05 11.05 0.00 4.85 F
1949 2255 0.753867 TTGGGTACGTCACTTGCTGA 59.246 50.000 0.00 0.00 0.00 4.26 F
1950 2256 0.973632 TGGGTACGTCACTTGCTGAT 59.026 50.000 0.00 0.00 0.00 2.90 F
2735 3050 1.610522 GGTTCTTGCAGTGCTGATTGT 59.389 47.619 17.60 0.00 0.00 2.71 F
3942 4478 3.005554 CCTAACTGACGACGGTCTTAGA 58.994 50.000 12.90 0.00 43.79 2.10 F
4793 5353 0.804989 CAAAGACGTTGCCCCATCTC 59.195 55.000 0.00 0.00 0.00 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1370 1671 0.740868 CGCCGGCTTTCTTCATCTCA 60.741 55.000 26.68 0.00 0.00 3.27 R
1481 1782 1.097547 AAAGATGCGAGGAATGGCCG 61.098 55.000 0.00 0.00 43.43 6.13 R
1988 2294 1.112916 CCACCCACCAAAAGTCCCAC 61.113 60.000 0.00 0.00 0.00 4.61 R
2719 3034 0.312729 TGCACAATCAGCACTGCAAG 59.687 50.000 3.30 0.00 36.71 4.01 R
3251 3777 1.202582 GCCACGAGAAAGTAGAGCTGA 59.797 52.381 0.00 0.00 0.00 4.26 R
3402 3937 1.751437 GGCCAGTCCCATTACTCAAC 58.249 55.000 0.00 0.00 0.00 3.18 R
3416 3951 1.870064 AAATGGAAATCAGGGGCCAG 58.130 50.000 4.39 0.00 33.26 4.85 R
4068 4604 0.665369 AGTAACACGTACGCACCTGC 60.665 55.000 16.72 1.18 37.81 4.85 R
5145 5710 0.031857 CTCATACTGCAGAGCTCCCG 59.968 60.000 23.35 2.85 0.00 5.14 R
6747 7348 0.107116 ACGTGGCACAAGGTTTACCA 60.107 50.000 19.09 0.00 44.16 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.726827 ACAAGTGGCGCATATTGTCG 59.273 50.000 10.83 0.00 30.25 4.35
38 39 6.128553 CGCATATTGTCGCAATATAGGAGTTT 60.129 38.462 18.37 0.93 0.00 2.66
238 249 1.124780 TTCCTTTCCGACCTGTCACA 58.875 50.000 0.00 0.00 0.00 3.58
275 286 3.726557 TCCACGAGAAGTAAGTCCCTA 57.273 47.619 0.00 0.00 0.00 3.53
289 302 0.033405 TCCCTACCTCTCACGGAAGG 60.033 60.000 0.00 0.00 0.00 3.46
357 370 0.095935 CTCGCAGAAGCAAATCCGTG 59.904 55.000 0.00 0.00 42.27 4.94
365 378 0.254178 AGCAAATCCGTGCCTCTCAT 59.746 50.000 0.00 0.00 46.14 2.90
548 561 3.064134 GCCTCTCGCAGAAGGAATAAAAC 59.936 47.826 0.00 0.00 37.11 2.43
549 562 4.253685 CCTCTCGCAGAAGGAATAAAACA 58.746 43.478 0.00 0.00 37.11 2.83
578 592 4.503741 TTTTTCTTTTCGAGAGGCATGG 57.496 40.909 0.00 0.00 35.37 3.66
691 707 3.437795 CACGGCCGTACCTCTCGT 61.438 66.667 33.70 0.61 35.61 4.18
721 877 9.797642 AGGAAAAATCATCTAAAAGCCAAAAAT 57.202 25.926 0.00 0.00 0.00 1.82
729 885 8.259411 TCATCTAAAAGCCAAAAATGCATACAT 58.741 29.630 0.00 0.00 38.49 2.29
769 925 9.774742 GAAACAAAATCTAAATGAAGCGTCTAT 57.225 29.630 0.31 0.00 0.00 1.98
773 929 6.936222 AATCTAAATGAAGCGTCTATAGCG 57.064 37.500 10.87 10.87 40.04 4.26
777 933 2.470196 TGAAGCGTCTATAGCGTGAC 57.530 50.000 14.92 8.90 40.04 3.67
778 934 1.741145 TGAAGCGTCTATAGCGTGACA 59.259 47.619 14.92 10.61 40.04 3.58
779 935 2.162809 TGAAGCGTCTATAGCGTGACAA 59.837 45.455 14.92 0.46 40.04 3.18
790 946 2.493035 AGCGTGACAACACATGATGAA 58.507 42.857 0.00 0.00 46.20 2.57
803 959 3.503891 CATGATGAATGTTGAAAGCGCA 58.496 40.909 11.47 0.00 0.00 6.09
822 978 1.128136 CATGAAGTGACAAGCTCGCAG 59.872 52.381 0.00 0.00 0.00 5.18
830 987 4.496336 AAGCTCGCAGCCCATCCC 62.496 66.667 4.77 0.00 43.77 3.85
837 994 1.751927 GCAGCCCATCCCAAGACTG 60.752 63.158 0.00 0.00 0.00 3.51
848 1005 4.982241 TCCCAAGACTGAAATGACTCTT 57.018 40.909 0.00 0.00 0.00 2.85
862 1065 0.688087 ACTCTTAGAAGGGCTCCCGG 60.688 60.000 0.00 0.00 41.95 5.73
921 1124 3.047877 CCTCACGTTCCGGGCAAC 61.048 66.667 0.00 0.00 0.00 4.17
947 1155 0.608035 TTTGCCTGCCCGGTCTAAAG 60.608 55.000 0.00 0.00 34.25 1.85
1225 1460 1.079819 CGCGCTTTCTCTTCAGGGA 60.080 57.895 5.56 0.00 0.00 4.20
1274 1522 2.262572 CGATTTGGGCGGAGAAAAAG 57.737 50.000 0.00 0.00 0.00 2.27
1275 1523 1.539827 CGATTTGGGCGGAGAAAAAGT 59.460 47.619 0.00 0.00 0.00 2.66
1277 1525 3.575630 GATTTGGGCGGAGAAAAAGTTC 58.424 45.455 0.00 0.00 0.00 3.01
1279 1527 3.495434 TTGGGCGGAGAAAAAGTTCTA 57.505 42.857 0.00 0.00 44.42 2.10
1280 1528 3.053831 TGGGCGGAGAAAAAGTTCTAG 57.946 47.619 0.00 0.00 44.42 2.43
1281 1529 1.738350 GGGCGGAGAAAAAGTTCTAGC 59.262 52.381 7.48 7.48 44.42 3.42
1282 1530 2.423577 GGCGGAGAAAAAGTTCTAGCA 58.576 47.619 14.33 0.00 44.42 3.49
1284 1532 2.416893 GCGGAGAAAAAGTTCTAGCAGG 59.583 50.000 9.94 0.00 44.42 4.85
1285 1533 3.864921 GCGGAGAAAAAGTTCTAGCAGGA 60.865 47.826 9.94 0.00 44.42 3.86
1287 1535 4.561734 CGGAGAAAAAGTTCTAGCAGGAGT 60.562 45.833 0.00 0.00 44.42 3.85
1288 1536 5.309638 GGAGAAAAAGTTCTAGCAGGAGTT 58.690 41.667 0.00 0.00 44.42 3.01
1291 1539 7.201830 GGAGAAAAAGTTCTAGCAGGAGTTTTT 60.202 37.037 16.30 16.30 44.42 1.94
1331 1579 8.818141 TCATGATTTCTCGATTCAGTATAACC 57.182 34.615 0.00 0.00 0.00 2.85
1346 1645 9.667107 TTCAGTATAACCTCTCTTACCAAATTG 57.333 33.333 0.00 0.00 0.00 2.32
1385 1686 2.358267 CCTGCATGAGATGAAGAAAGCC 59.642 50.000 0.00 0.00 38.25 4.35
1403 1704 2.819595 GGCGAGCGGCTCATTTCA 60.820 61.111 27.83 0.00 42.94 2.69
1412 1713 0.522076 GGCTCATTTCAGCGCTTTCG 60.522 55.000 7.50 0.00 40.68 3.46
1430 1731 5.616424 GCTTTCGCTGGTAATCATCATCATC 60.616 44.000 0.00 0.00 0.00 2.92
1431 1732 4.605640 TCGCTGGTAATCATCATCATCA 57.394 40.909 0.00 0.00 0.00 3.07
1432 1733 4.309933 TCGCTGGTAATCATCATCATCAC 58.690 43.478 0.00 0.00 0.00 3.06
1451 1752 1.341383 ACCACAATCCCATCTCCAAGC 60.341 52.381 0.00 0.00 0.00 4.01
1481 1782 9.612620 CCAGACAACATTTTGTTCTATTTCTAC 57.387 33.333 0.00 0.00 46.43 2.59
1492 1793 4.602340 TCTATTTCTACGGCCATTCCTC 57.398 45.455 2.24 0.00 0.00 3.71
1494 1795 0.461339 TTTCTACGGCCATTCCTCGC 60.461 55.000 2.24 0.00 0.00 5.03
1495 1796 1.609635 TTCTACGGCCATTCCTCGCA 61.610 55.000 2.24 0.00 0.00 5.10
1507 1808 1.471119 TCCTCGCATCTTTACCGAGT 58.529 50.000 8.24 0.00 45.00 4.18
1514 1815 6.080648 TCGCATCTTTACCGAGTATAACAT 57.919 37.500 0.00 0.00 0.00 2.71
1519 1820 6.932356 TCTTTACCGAGTATAACATCGACT 57.068 37.500 0.00 0.00 41.40 4.18
1524 1825 8.887036 TTACCGAGTATAACATCGACTAACTA 57.113 34.615 0.00 0.00 41.40 2.24
1529 1830 8.016229 CGAGTATAACATCGACTAACTATTGCT 58.984 37.037 0.00 0.00 41.40 3.91
1532 1833 7.700322 ATAACATCGACTAACTATTGCTGTG 57.300 36.000 0.00 0.00 0.00 3.66
1543 1847 4.122776 ACTATTGCTGTGCATACTGTAGC 58.877 43.478 0.00 0.00 38.76 3.58
1555 1859 4.870426 GCATACTGTAGCACACTGTTACAT 59.130 41.667 6.37 0.00 41.88 2.29
1556 1860 5.005779 GCATACTGTAGCACACTGTTACATC 59.994 44.000 6.37 0.00 41.88 3.06
1589 1893 3.660970 TCCTGTCTGATCTGACTAGCT 57.339 47.619 26.86 0.00 37.79 3.32
1601 1905 7.559486 TGATCTGACTAGCTATTTTGTGACAT 58.441 34.615 0.00 0.00 0.00 3.06
1602 1906 7.493645 TGATCTGACTAGCTATTTTGTGACATG 59.506 37.037 0.00 0.00 0.00 3.21
1609 1913 0.609662 ATTTTGTGACATGGGCTGCC 59.390 50.000 11.05 11.05 0.00 4.85
1638 1942 2.774687 CTTGTTTAGGCAAGGTACCGT 58.225 47.619 6.18 0.00 41.41 4.83
1697 2001 1.078426 AGGACCGGCATTTTCTCCG 60.078 57.895 0.00 0.00 44.89 4.63
1706 2010 2.814336 GGCATTTTCTCCGTCTGAAAGT 59.186 45.455 0.00 0.00 35.27 2.66
1728 2032 4.918810 AACGGTGAAATTTTCTCTGCTT 57.081 36.364 16.26 9.47 33.89 3.91
1776 2082 4.406972 ACCATCTATGACTAGAAGCTGCAA 59.593 41.667 1.02 0.00 37.52 4.08
1790 2096 2.061028 GCTGCAACTGGTTTAACATGC 58.939 47.619 0.00 2.84 0.00 4.06
1795 2101 3.364621 GCAACTGGTTTAACATGCGATTG 59.635 43.478 0.00 0.00 0.00 2.67
1829 2135 7.422399 GTGCTATCTTACTAGAAGAGTTGGAG 58.578 42.308 0.00 0.00 39.81 3.86
1949 2255 0.753867 TTGGGTACGTCACTTGCTGA 59.246 50.000 0.00 0.00 0.00 4.26
1950 2256 0.973632 TGGGTACGTCACTTGCTGAT 59.026 50.000 0.00 0.00 0.00 2.90
1982 2288 9.180678 CCTTTTACTTTACATAACTTGCACTTG 57.819 33.333 0.00 0.00 0.00 3.16
1988 2294 8.227791 ACTTTACATAACTTGCACTTGTAATCG 58.772 33.333 0.00 0.00 33.99 3.34
2073 2379 6.048509 TGCAAGCAGATAATCGACTTGAATA 58.951 36.000 12.35 0.00 36.76 1.75
2188 2495 6.767902 CCAGGCTAAGCAGTTGATTCTAAATA 59.232 38.462 0.00 0.00 0.00 1.40
2237 2544 4.875544 TTTGCTATATCGTCTGGTTTGC 57.124 40.909 0.00 0.00 0.00 3.68
2239 2546 3.194861 TGCTATATCGTCTGGTTTGCAC 58.805 45.455 0.00 0.00 0.00 4.57
2240 2547 2.544267 GCTATATCGTCTGGTTTGCACC 59.456 50.000 0.00 0.00 44.56 5.01
2479 2794 6.039047 TGGAATCTGCAAATCTCTTAGAATGC 59.961 38.462 9.76 9.76 39.85 3.56
2503 2818 6.372659 GCACTAAGAGATTCCAGATTTGTTGA 59.627 38.462 0.00 0.00 0.00 3.18
2541 2856 4.459852 AGGCATATAAGACCTGGCATTT 57.540 40.909 0.00 0.00 37.87 2.32
2570 2885 2.483714 CGCAAGTGTGGTAGGCAGATAT 60.484 50.000 0.00 0.00 0.00 1.63
2590 2905 7.341512 CAGATATATGCTTGATCCTAGGAGTGA 59.658 40.741 18.34 4.19 0.00 3.41
2604 2919 3.813443 AGGAGTGAACATATGGATGCAC 58.187 45.455 7.80 9.10 36.43 4.57
2660 2975 4.079970 CTGGGAAGGGGTTTAAGAAGAAC 58.920 47.826 0.00 0.00 0.00 3.01
2670 2985 4.217767 GGTTTAAGAAGAACGGCCATCTTT 59.782 41.667 18.91 9.20 37.26 2.52
2671 2986 5.278808 GGTTTAAGAAGAACGGCCATCTTTT 60.279 40.000 18.91 12.41 37.26 2.27
2672 2987 6.213677 GTTTAAGAAGAACGGCCATCTTTTT 58.786 36.000 20.84 20.84 37.26 1.94
2724 3039 7.514784 CATCTTAATATGGATGGTTCTTGCA 57.485 36.000 0.00 0.00 36.60 4.08
2725 3040 7.591165 CATCTTAATATGGATGGTTCTTGCAG 58.409 38.462 0.00 0.00 36.60 4.41
2735 3050 1.610522 GGTTCTTGCAGTGCTGATTGT 59.389 47.619 17.60 0.00 0.00 2.71
2881 3389 5.381757 AGAGCTATGTCACTAGGACTTAGG 58.618 45.833 21.96 12.40 46.57 2.69
2993 3509 3.728845 CATAACCAGTAACCCGATCCAG 58.271 50.000 0.00 0.00 0.00 3.86
3132 3658 7.309805 GGGTTTTGGAGTCAAGCATAATTTAGT 60.310 37.037 0.00 0.00 33.98 2.24
3164 3690 8.432805 ACAAAAAGATGGGAACGATATCTATCT 58.567 33.333 0.34 0.00 31.30 1.98
3165 3691 9.929180 CAAAAAGATGGGAACGATATCTATCTA 57.071 33.333 0.34 0.00 31.30 1.98
3168 3694 9.480861 AAAGATGGGAACGATATCTATCTATGA 57.519 33.333 0.34 0.00 31.30 2.15
3169 3695 9.653516 AAGATGGGAACGATATCTATCTATGAT 57.346 33.333 0.34 0.00 31.30 2.45
3170 3696 9.295825 AGATGGGAACGATATCTATCTATGATC 57.704 37.037 0.34 0.00 29.82 2.92
3236 3762 7.386299 CAGGGTGATAATGAAGCATTAGTAGAC 59.614 40.741 6.12 1.22 39.28 2.59
3251 3777 7.225538 GCATTAGTAGACTGCATCTTACATGTT 59.774 37.037 2.30 0.00 39.04 2.71
3544 4079 6.884295 TGGGATCTTTAATGTTCTACAACCTG 59.116 38.462 0.00 0.00 0.00 4.00
3942 4478 3.005554 CCTAACTGACGACGGTCTTAGA 58.994 50.000 12.90 0.00 43.79 2.10
3975 4511 6.161855 AGATGCGGAAGTTTGACATATCTA 57.838 37.500 0.00 0.00 0.00 1.98
4059 4595 6.240894 ACTTGCTGTGATTTATCTCTGGAAA 58.759 36.000 6.92 0.00 32.57 3.13
4068 4604 7.221067 GTGATTTATCTCTGGAAACACTACTCG 59.779 40.741 0.00 0.00 35.60 4.18
4123 4659 1.990799 CTATCGCACAAGGTTGTCGA 58.009 50.000 15.03 15.03 39.91 4.20
4149 4685 6.727231 TCCCTTGAACTACTAAGGTAATGTGA 59.273 38.462 0.00 0.00 41.48 3.58
4203 4739 4.386652 GTGGCTTATGCACATTCTGTTTTG 59.613 41.667 2.72 0.00 41.91 2.44
4312 4852 3.521531 TGGATGTAAATGGCTGTACTGGA 59.478 43.478 1.65 0.00 0.00 3.86
4484 5024 7.332430 CCGTGACCATACAAATAAGAGTAAACA 59.668 37.037 0.00 0.00 0.00 2.83
4536 5076 5.863935 CAGCCTACAATTTAGCAAAAGAACC 59.136 40.000 0.00 0.00 0.00 3.62
4647 5187 8.773033 AGGCTTGATGGTTAATCATTTAATCT 57.227 30.769 1.99 0.00 44.84 2.40
4666 5222 1.205893 CTTAGGGTGACAGCTCCACTC 59.794 57.143 13.57 10.68 35.31 3.51
4763 5323 4.116238 GCCTCTAGACTGTAGTGCATTTC 58.884 47.826 0.00 0.00 0.00 2.17
4793 5353 0.804989 CAAAGACGTTGCCCCATCTC 59.195 55.000 0.00 0.00 0.00 2.75
4849 5409 7.281100 CCTGAAGTTGAGAGTAAATAATCCACC 59.719 40.741 0.00 0.00 0.00 4.61
4921 5482 1.398390 CCATTTTGTGCCTAGCTCGTC 59.602 52.381 0.00 0.00 0.00 4.20
4925 5486 3.075005 GTGCCTAGCTCGTCCCCA 61.075 66.667 0.00 0.00 0.00 4.96
4927 5488 2.187163 GCCTAGCTCGTCCCCAAC 59.813 66.667 0.00 0.00 0.00 3.77
4931 5496 1.229400 TAGCTCGTCCCCAACCCTT 60.229 57.895 0.00 0.00 0.00 3.95
4945 5510 4.263683 CCCAACCCTTCTCTTCTTTCTCAT 60.264 45.833 0.00 0.00 0.00 2.90
4946 5511 4.940654 CCAACCCTTCTCTTCTTTCTCATC 59.059 45.833 0.00 0.00 0.00 2.92
4957 5522 5.245301 TCTTCTTTCTCATCGTCCTTGGTAA 59.755 40.000 0.00 0.00 0.00 2.85
4962 5527 1.829222 TCATCGTCCTTGGTAACCTCC 59.171 52.381 0.00 0.00 0.00 4.30
5032 5597 2.799562 CGCCTAGAAGATCGTTGCATCA 60.800 50.000 0.00 0.00 0.00 3.07
5044 5609 3.179925 TGCATCAACCTGCAGATCC 57.820 52.632 17.39 0.00 46.76 3.36
5108 5673 1.272928 TGACCTGCAGATCTCCTCACT 60.273 52.381 17.39 0.00 0.00 3.41
5121 5686 1.079543 CTCACTGGCCTTCACCTCG 60.080 63.158 3.32 0.00 0.00 4.63
5128 5693 1.617947 GGCCTTCACCTCGACCAGAT 61.618 60.000 0.00 0.00 0.00 2.90
5135 5700 0.811915 ACCTCGACCAGATGAACTCG 59.188 55.000 0.00 0.00 0.00 4.18
5145 5710 1.304134 ATGAACTCGGGGGTTTGCC 60.304 57.895 0.00 0.00 0.00 4.52
5157 5722 3.952508 TTTGCCGGGAGCTCTGCA 61.953 61.111 14.64 16.65 44.23 4.41
5169 5734 0.539051 GCTCTGCAGTATGAGGTGGT 59.461 55.000 14.67 0.00 39.69 4.16
5170 5735 1.472376 GCTCTGCAGTATGAGGTGGTC 60.472 57.143 14.67 0.00 39.69 4.02
5220 5785 5.455392 CAGCGAGTTTTCATGTTCTTGATT 58.545 37.500 0.00 0.00 0.00 2.57
5221 5786 5.916883 CAGCGAGTTTTCATGTTCTTGATTT 59.083 36.000 0.00 0.00 0.00 2.17
5277 5842 3.246416 ACTGTGAGTTGTCTAGGGAGT 57.754 47.619 0.00 0.00 0.00 3.85
5310 5875 4.675190 CTCATGATTGAGTTGCGAGTTT 57.325 40.909 0.00 0.00 43.73 2.66
5325 5890 3.243401 GCGAGTTTGTGAAATCCCTGTTT 60.243 43.478 0.00 0.00 0.00 2.83
5327 5892 4.051237 GAGTTTGTGAAATCCCTGTTTGC 58.949 43.478 0.00 0.00 0.00 3.68
5334 5899 3.181429 TGAAATCCCTGTTTGCCTTCTCT 60.181 43.478 0.00 0.00 0.00 3.10
5335 5900 3.532641 AATCCCTGTTTGCCTTCTCTT 57.467 42.857 0.00 0.00 0.00 2.85
5364 5935 0.824109 AGTAGTATTGCCTCGCAGCA 59.176 50.000 0.00 0.00 40.61 4.41
5395 5966 0.390124 TCTGCAGGCCAAAGCTTTTG 59.610 50.000 15.13 7.52 39.73 2.44
5402 5973 3.878699 CAGGCCAAAGCTTTTGAATTTGT 59.121 39.130 14.13 0.00 39.73 2.83
5404 5975 3.548616 GGCCAAAGCTTTTGAATTTGTGC 60.549 43.478 14.13 5.89 39.73 4.57
5411 5982 2.420628 TTTGAATTTGTGCCTGAGCG 57.579 45.000 0.00 0.00 44.31 5.03
5459 6030 3.550431 ATGGCGTGGAGGGATCGG 61.550 66.667 0.00 0.00 0.00 4.18
5476 6047 4.822896 GGATCGGTTATAGCTATCTCGGAT 59.177 45.833 10.16 17.13 0.00 4.18
5501 6072 1.829533 CTTGGTGGTGCCTTGTGCT 60.830 57.895 0.00 0.00 42.00 4.40
5594 6165 5.112220 TGTTGAAGCTGTTCATGTGATTC 57.888 39.130 0.00 0.00 42.41 2.52
5627 6201 3.883997 CCATTTGGGTCGGTTGTTG 57.116 52.632 0.00 0.00 0.00 3.33
5628 6202 1.036707 CCATTTGGGTCGGTTGTTGT 58.963 50.000 0.00 0.00 0.00 3.32
5629 6203 1.410882 CCATTTGGGTCGGTTGTTGTT 59.589 47.619 0.00 0.00 0.00 2.83
5636 6210 2.684374 GGGTCGGTTGTTGTTTTGTAGT 59.316 45.455 0.00 0.00 0.00 2.73
5665 6239 8.635765 ACTTGGTTAGAAAGATAAATGCTTCA 57.364 30.769 0.00 0.00 0.00 3.02
5716 6290 6.872628 ATTATGTGCTCATGTGATAACCTG 57.127 37.500 11.46 0.00 35.70 4.00
5717 6291 2.358957 TGTGCTCATGTGATAACCTGC 58.641 47.619 0.00 0.00 0.00 4.85
5718 6292 2.026915 TGTGCTCATGTGATAACCTGCT 60.027 45.455 0.00 0.00 0.00 4.24
5719 6293 3.197549 TGTGCTCATGTGATAACCTGCTA 59.802 43.478 0.00 0.00 0.00 3.49
5720 6294 4.191544 GTGCTCATGTGATAACCTGCTAA 58.808 43.478 0.00 0.00 0.00 3.09
5751 6325 1.064060 GTGATCCAGGCAATAACGTGC 59.936 52.381 0.00 0.00 44.14 5.34
5756 6330 2.942376 TCCAGGCAATAACGTGCATAAG 59.058 45.455 0.00 0.00 46.81 1.73
5757 6331 2.942376 CCAGGCAATAACGTGCATAAGA 59.058 45.455 0.00 0.00 46.81 2.10
5758 6332 3.002656 CCAGGCAATAACGTGCATAAGAG 59.997 47.826 0.00 0.00 46.81 2.85
5759 6333 3.623060 CAGGCAATAACGTGCATAAGAGT 59.377 43.478 0.00 0.00 46.81 3.24
5760 6334 4.094887 CAGGCAATAACGTGCATAAGAGTT 59.905 41.667 0.00 0.00 46.81 3.01
5761 6335 5.293324 CAGGCAATAACGTGCATAAGAGTTA 59.707 40.000 0.00 0.00 46.81 2.24
5762 6336 5.878116 AGGCAATAACGTGCATAAGAGTTAA 59.122 36.000 0.00 0.00 46.81 2.01
5763 6337 6.373216 AGGCAATAACGTGCATAAGAGTTAAA 59.627 34.615 0.00 0.00 46.81 1.52
5764 6338 7.024768 GGCAATAACGTGCATAAGAGTTAAAA 58.975 34.615 0.00 0.00 46.81 1.52
5765 6339 7.700656 GGCAATAACGTGCATAAGAGTTAAAAT 59.299 33.333 0.00 0.00 46.81 1.82
5766 6340 9.710979 GCAATAACGTGCATAAGAGTTAAAATA 57.289 29.630 0.00 0.00 44.29 1.40
5921 6497 9.105844 TGGGGGAAATAAAAATGAATCAAACTA 57.894 29.630 0.00 0.00 0.00 2.24
5978 6554 8.502387 GTGCAGACAATCCTATTCTTCAATATC 58.498 37.037 0.00 0.00 0.00 1.63
5979 6555 7.663081 TGCAGACAATCCTATTCTTCAATATCC 59.337 37.037 0.00 0.00 0.00 2.59
5980 6556 7.663081 GCAGACAATCCTATTCTTCAATATCCA 59.337 37.037 0.00 0.00 0.00 3.41
5981 6557 9.736414 CAGACAATCCTATTCTTCAATATCCAT 57.264 33.333 0.00 0.00 0.00 3.41
6003 6581 9.352191 TCCATAGGTTTTCTAGTCTGAGTATAC 57.648 37.037 0.00 0.00 0.00 1.47
6017 6595 8.812972 AGTCTGAGTATACCATCACTTTTTACA 58.187 33.333 0.00 0.00 0.00 2.41
6065 6644 3.322541 TGATTGACGAGTACCCTTGTTCA 59.677 43.478 0.00 0.00 35.34 3.18
6197 6777 2.854185 GCTGGCATTCGTAAAAGCATTC 59.146 45.455 0.00 0.00 30.74 2.67
6216 6796 2.583441 CGGAAGTGTCTGGCCCTGA 61.583 63.158 0.00 0.00 0.00 3.86
6219 6799 1.528129 GAAGTGTCTGGCCCTGAAAG 58.472 55.000 0.00 0.00 0.00 2.62
6229 6809 1.609208 GCCCTGAAAGAACAGAGCAA 58.391 50.000 0.00 0.00 40.46 3.91
6230 6810 1.956477 GCCCTGAAAGAACAGAGCAAA 59.044 47.619 0.00 0.00 40.46 3.68
6231 6811 2.030451 GCCCTGAAAGAACAGAGCAAAG 60.030 50.000 0.00 0.00 40.46 2.77
6232 6812 3.480470 CCCTGAAAGAACAGAGCAAAGA 58.520 45.455 0.00 0.00 39.94 2.52
6233 6813 3.251972 CCCTGAAAGAACAGAGCAAAGAC 59.748 47.826 0.00 0.00 39.94 3.01
6242 6826 5.183904 AGAACAGAGCAAAGACAGTTTTTGT 59.816 36.000 15.92 5.27 44.55 2.83
6255 6839 0.820871 TTTTTGTCGCCTGCTGGTTT 59.179 45.000 11.69 0.00 35.27 3.27
6256 6840 1.681538 TTTTGTCGCCTGCTGGTTTA 58.318 45.000 11.69 0.00 35.27 2.01
6272 6856 5.619981 GCTGGTTTACTTGTTTCTATGCTGG 60.620 44.000 0.00 0.00 0.00 4.85
6287 6871 1.823610 TGCTGGTGTGAGAGAGATCAG 59.176 52.381 0.00 0.00 0.00 2.90
6312 6896 5.768164 AGGACCTGTACAATCGATTTTTGTT 59.232 36.000 8.21 0.00 38.26 2.83
6316 6900 9.698617 GACCTGTACAATCGATTTTTGTTATAC 57.301 33.333 8.21 1.73 38.26 1.47
6320 6904 7.688989 TGTACAATCGATTTTTGTTATACGTGC 59.311 33.333 8.21 3.74 38.26 5.34
6323 6907 3.679025 TCGATTTTTGTTATACGTGCGGT 59.321 39.130 0.00 0.00 0.00 5.68
6335 6919 0.655733 CGTGCGGTGTTTCTCAGTTT 59.344 50.000 0.00 0.00 0.00 2.66
6350 6934 9.952341 GTTTCTCAGTTTCATTGTTACAAAAAC 57.048 29.630 14.15 14.15 0.00 2.43
6402 6986 8.597662 ACATGACCAAAATCATCTTTTCTTTG 57.402 30.769 0.00 0.00 37.20 2.77
6405 6989 9.617523 ATGACCAAAATCATCTTTTCTTTGTTT 57.382 25.926 0.00 0.00 33.99 2.83
6414 6998 7.835822 TCATCTTTTCTTTGTTTGAGGTTTCA 58.164 30.769 0.00 0.00 0.00 2.69
6421 7005 6.696411 TCTTTGTTTGAGGTTTCACATTGTT 58.304 32.000 0.00 0.00 31.71 2.83
6430 7014 4.895297 AGGTTTCACATTGTTTGGTGATCT 59.105 37.500 0.00 0.00 43.01 2.75
6464 7048 6.801539 TTGCGAGAGTTTAGTGATCATTTT 57.198 33.333 0.00 0.00 0.00 1.82
6469 7053 9.214953 GCGAGAGTTTAGTGATCATTTTAATTG 57.785 33.333 0.00 0.00 0.00 2.32
6486 7070 8.443953 TTTTAATTGTGAAGGAAACCAATTGG 57.556 30.769 23.31 23.31 37.87 3.16
6505 7089 0.451783 GTGGACCCGCTAAATGCTTG 59.548 55.000 0.00 0.00 40.11 4.01
6507 7091 0.733150 GGACCCGCTAAATGCTTGAC 59.267 55.000 0.00 0.00 40.11 3.18
6570 7160 5.474876 ACAGAGTTTAAAGAGGGCAATTCTG 59.525 40.000 0.00 0.00 35.63 3.02
6614 7204 2.224769 CCTTGTAGCTTGGGAGTTTGGA 60.225 50.000 0.00 0.00 0.00 3.53
6678 7275 1.276622 TTTGCTGGGAGGGTAGAGAC 58.723 55.000 0.00 0.00 0.00 3.36
6679 7276 0.413832 TTGCTGGGAGGGTAGAGACT 59.586 55.000 0.00 0.00 0.00 3.24
6680 7277 1.305886 TGCTGGGAGGGTAGAGACTA 58.694 55.000 0.00 0.00 0.00 2.59
6681 7278 1.215673 TGCTGGGAGGGTAGAGACTAG 59.784 57.143 0.00 0.00 0.00 2.57
6684 7281 1.275416 TGGGAGGGTAGAGACTAGGGA 60.275 57.143 0.00 0.00 0.00 4.20
6685 7282 1.426215 GGGAGGGTAGAGACTAGGGAG 59.574 61.905 0.00 0.00 0.00 4.30
6686 7283 1.426215 GGAGGGTAGAGACTAGGGAGG 59.574 61.905 0.00 0.00 0.00 4.30
6688 7285 1.233857 GGGTAGAGACTAGGGAGGGT 58.766 60.000 0.00 0.00 0.00 4.34
6689 7286 2.020239 AGGGTAGAGACTAGGGAGGGTA 60.020 54.545 0.00 0.00 0.00 3.69
6690 7287 2.376181 GGGTAGAGACTAGGGAGGGTAG 59.624 59.091 0.00 0.00 0.00 3.18
6691 7288 3.325605 GGTAGAGACTAGGGAGGGTAGA 58.674 54.545 0.00 0.00 0.00 2.59
6692 7289 3.328637 GGTAGAGACTAGGGAGGGTAGAG 59.671 56.522 0.00 0.00 0.00 2.43
6693 7290 3.441505 AGAGACTAGGGAGGGTAGAGA 57.558 52.381 0.00 0.00 0.00 3.10
6694 7291 3.050835 AGAGACTAGGGAGGGTAGAGAC 58.949 54.545 0.00 0.00 0.00 3.36
6695 7292 2.778850 GAGACTAGGGAGGGTAGAGACA 59.221 54.545 0.00 0.00 0.00 3.41
6696 7293 3.199671 AGACTAGGGAGGGTAGAGACAA 58.800 50.000 0.00 0.00 0.00 3.18
6697 7294 3.053470 AGACTAGGGAGGGTAGAGACAAC 60.053 52.174 0.00 0.00 0.00 3.32
6698 7295 2.927685 ACTAGGGAGGGTAGAGACAACT 59.072 50.000 0.00 0.00 0.00 3.16
6700 7297 4.543337 ACTAGGGAGGGTAGAGACAACTTA 59.457 45.833 0.00 0.00 0.00 2.24
6702 7299 4.290942 AGGGAGGGTAGAGACAACTTATG 58.709 47.826 0.00 0.00 0.00 1.90
6737 7338 3.181455 GGGAAGTTGTTTTTGATGGCCTT 60.181 43.478 3.32 0.00 0.00 4.35
6746 7347 6.013379 TGTTTTTGATGGCCTTTCTGGTATA 58.987 36.000 3.32 0.00 38.35 1.47
6747 7348 6.667414 TGTTTTTGATGGCCTTTCTGGTATAT 59.333 34.615 3.32 0.00 38.35 0.86
6748 7349 6.713762 TTTTGATGGCCTTTCTGGTATATG 57.286 37.500 3.32 0.00 38.35 1.78
6749 7350 4.371624 TGATGGCCTTTCTGGTATATGG 57.628 45.455 3.32 0.00 38.35 2.74
6765 7451 1.243902 ATGGTAAACCTTGTGCCACG 58.756 50.000 0.02 0.00 36.82 4.94
6769 7455 3.007723 TGGTAAACCTTGTGCCACGTATA 59.992 43.478 0.02 0.00 36.82 1.47
6772 7458 3.343941 AACCTTGTGCCACGTATATGT 57.656 42.857 0.00 0.00 0.00 2.29
6774 7460 2.027561 ACCTTGTGCCACGTATATGTGT 60.028 45.455 20.91 0.34 38.20 3.72
6798 7504 4.026886 GGTTTGAACGTGCAAAAACATCTC 60.027 41.667 23.17 8.92 39.26 2.75
6799 7505 4.362932 TTGAACGTGCAAAAACATCTCA 57.637 36.364 6.47 0.00 0.00 3.27
6809 7515 2.839486 AAACATCTCAAGCGACCTCA 57.161 45.000 0.00 0.00 0.00 3.86
6819 7525 2.201921 AGCGACCTCAGAGTCAAGTA 57.798 50.000 0.00 0.00 36.52 2.24
6821 7527 2.490115 AGCGACCTCAGAGTCAAGTAAG 59.510 50.000 0.00 0.00 36.52 2.34
6822 7528 2.229302 GCGACCTCAGAGTCAAGTAAGT 59.771 50.000 0.00 0.00 36.52 2.24
6841 7558 7.120716 AGTAAGTCAGGTCCCTAAAACAAAAA 58.879 34.615 0.00 0.00 0.00 1.94
6859 7580 2.279935 AAAATGGTTGTACCGGCAGA 57.720 45.000 0.00 0.00 42.58 4.26
6863 7584 1.375523 GGTTGTACCGGCAGACAGG 60.376 63.158 0.00 0.00 0.00 4.00
6917 7962 5.619981 GCTTAGTCCAATTGCAACTTGTAGG 60.620 44.000 14.56 0.00 0.00 3.18
6920 7965 4.892934 AGTCCAATTGCAACTTGTAGGAAA 59.107 37.500 0.00 0.00 0.00 3.13
6963 8010 5.590530 AAAAATGGTTGCACTTGTAGTCA 57.409 34.783 0.00 0.00 0.00 3.41
6967 8014 4.019792 TGGTTGCACTTGTAGTCATCAT 57.980 40.909 0.00 0.00 0.00 2.45
6969 8016 4.002982 GGTTGCACTTGTAGTCATCATCA 58.997 43.478 0.00 0.00 0.00 3.07
6973 8020 4.080975 TGCACTTGTAGTCATCATCATCCA 60.081 41.667 0.00 0.00 0.00 3.41
6975 8022 5.007430 GCACTTGTAGTCATCATCATCCAAG 59.993 44.000 0.00 0.00 35.40 3.61
6987 8034 8.270030 TCATCATCATCCAAGAGAATTTAGTGT 58.730 33.333 0.00 0.00 0.00 3.55
6990 8037 4.870426 TCATCCAAGAGAATTTAGTGTCGC 59.130 41.667 0.00 0.00 0.00 5.19
7009 8056 2.226437 CGCCGGCTTAATCTAATTGCAT 59.774 45.455 26.68 0.00 0.00 3.96
7093 8146 1.374125 TCACTGACGACGCCATTGG 60.374 57.895 0.00 0.00 0.00 3.16
7120 8174 3.512516 GCCAATCTGCCGTCCAGC 61.513 66.667 0.00 0.00 41.50 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 4.360563 AGATTCGAATACGCGATTTCAGT 58.639 39.130 15.93 3.91 40.35 3.41
233 244 4.483476 AGTACGGATTTGCTTTTGTGAC 57.517 40.909 0.00 0.00 0.00 3.67
238 249 3.058501 CGTGGAAGTACGGATTTGCTTTT 60.059 43.478 0.00 0.00 40.22 2.27
300 313 6.382608 CCTCTCGAAAAAGGGAAAAGAATTC 58.617 40.000 0.00 0.00 0.00 2.17
301 314 5.279006 GCCTCTCGAAAAAGGGAAAAGAATT 60.279 40.000 9.50 0.00 32.98 2.17
302 315 4.218635 GCCTCTCGAAAAAGGGAAAAGAAT 59.781 41.667 9.50 0.00 32.98 2.40
303 316 3.568430 GCCTCTCGAAAAAGGGAAAAGAA 59.432 43.478 9.50 0.00 32.98 2.52
304 317 3.146847 GCCTCTCGAAAAAGGGAAAAGA 58.853 45.455 9.50 0.00 32.98 2.52
305 318 2.884639 TGCCTCTCGAAAAAGGGAAAAG 59.115 45.455 9.50 0.00 32.98 2.27
334 347 0.376502 GATTTGCTTCTGCGAGAGGC 59.623 55.000 11.53 11.53 46.21 4.70
335 348 1.012841 GGATTTGCTTCTGCGAGAGG 58.987 55.000 0.00 0.00 43.34 3.69
336 349 0.649475 CGGATTTGCTTCTGCGAGAG 59.351 55.000 0.00 0.00 43.34 3.20
337 350 0.037326 ACGGATTTGCTTCTGCGAGA 60.037 50.000 0.00 0.00 43.34 4.04
338 351 0.095935 CACGGATTTGCTTCTGCGAG 59.904 55.000 0.00 0.00 43.34 5.03
339 352 1.911293 GCACGGATTTGCTTCTGCGA 61.911 55.000 0.00 0.00 43.34 5.10
340 353 1.512734 GCACGGATTTGCTTCTGCG 60.513 57.895 0.00 0.00 43.34 5.18
341 354 1.153958 GGCACGGATTTGCTTCTGC 60.154 57.895 0.00 0.00 42.56 4.26
342 355 0.449388 GAGGCACGGATTTGCTTCTG 59.551 55.000 1.28 0.00 43.46 3.02
357 370 3.690460 TCTTTTTCCTTCCATGAGAGGC 58.310 45.455 8.90 0.00 0.00 4.70
446 459 3.153919 TCTCGGAAAGGGGAAAAACATG 58.846 45.455 0.00 0.00 0.00 3.21
447 460 3.073946 TCTCTCGGAAAGGGGAAAAACAT 59.926 43.478 0.00 0.00 0.00 2.71
448 461 2.440253 TCTCTCGGAAAGGGGAAAAACA 59.560 45.455 0.00 0.00 0.00 2.83
449 462 2.812591 GTCTCTCGGAAAGGGGAAAAAC 59.187 50.000 0.00 0.00 0.00 2.43
450 463 2.709397 AGTCTCTCGGAAAGGGGAAAAA 59.291 45.455 0.00 0.00 0.00 1.94
561 574 1.404181 CGTCCATGCCTCTCGAAAAGA 60.404 52.381 0.00 0.00 0.00 2.52
562 575 1.002366 CGTCCATGCCTCTCGAAAAG 58.998 55.000 0.00 0.00 0.00 2.27
567 581 2.887568 GCACGTCCATGCCTCTCG 60.888 66.667 0.00 0.00 39.86 4.04
578 592 4.415332 TTCCGCGAGAGGCACGTC 62.415 66.667 8.23 0.00 43.84 4.34
691 707 6.496565 TGGCTTTTAGATGATTTTTCCTTCCA 59.503 34.615 0.00 0.00 0.00 3.53
747 903 7.737744 CGCTATAGACGCTTCATTTAGATTTTG 59.262 37.037 3.21 0.00 0.00 2.44
748 904 7.438459 ACGCTATAGACGCTTCATTTAGATTTT 59.562 33.333 3.21 0.00 0.00 1.82
769 925 3.311486 TCATCATGTGTTGTCACGCTA 57.689 42.857 0.00 0.00 46.49 4.26
773 929 5.761003 TCAACATTCATCATGTGTTGTCAC 58.239 37.500 19.63 0.00 46.23 3.67
777 933 5.164129 CGCTTTCAACATTCATCATGTGTTG 60.164 40.000 16.17 16.17 46.23 3.33
778 934 4.919168 CGCTTTCAACATTCATCATGTGTT 59.081 37.500 0.00 0.00 46.23 3.32
779 935 4.478699 CGCTTTCAACATTCATCATGTGT 58.521 39.130 0.00 0.00 46.23 3.72
790 946 2.553602 TCACTTCATGCGCTTTCAACAT 59.446 40.909 9.73 0.00 0.00 2.71
797 953 0.239347 GCTTGTCACTTCATGCGCTT 59.761 50.000 9.73 0.00 0.00 4.68
800 956 0.094216 CGAGCTTGTCACTTCATGCG 59.906 55.000 0.00 0.00 41.33 4.73
803 959 1.436600 CTGCGAGCTTGTCACTTCAT 58.563 50.000 2.14 0.00 0.00 2.57
822 978 1.753073 CATTTCAGTCTTGGGATGGGC 59.247 52.381 0.00 0.00 0.00 5.36
830 987 6.593382 CCCTTCTAAGAGTCATTTCAGTCTTG 59.407 42.308 0.00 0.00 36.81 3.02
837 994 4.447290 GGAGCCCTTCTAAGAGTCATTTC 58.553 47.826 0.00 0.00 0.00 2.17
848 1005 2.282446 CCTCCGGGAGCCCTTCTA 59.718 66.667 18.91 0.00 33.58 2.10
862 1065 1.248785 TACGTCCACACTCAGGCCTC 61.249 60.000 0.00 0.00 0.00 4.70
921 1124 1.137404 CGGGCAGGCAAATTTCTCG 59.863 57.895 0.00 0.00 0.00 4.04
954 1162 4.200092 GGGAGAGCGTGATTTTTATTCCT 58.800 43.478 0.00 0.00 0.00 3.36
956 1164 3.002348 CGGGGAGAGCGTGATTTTTATTC 59.998 47.826 0.00 0.00 0.00 1.75
958 1166 2.561569 CGGGGAGAGCGTGATTTTTAT 58.438 47.619 0.00 0.00 0.00 1.40
959 1167 2.010043 GCGGGGAGAGCGTGATTTTTA 61.010 52.381 0.00 0.00 0.00 1.52
1044 1262 3.385749 CTCCATCACCCGGGGAACG 62.386 68.421 27.92 13.91 43.80 3.95
1100 1318 3.071206 GGCTGACGGAGAGCAGGA 61.071 66.667 5.16 0.00 38.27 3.86
1225 1460 1.031029 GCGAAGGGGAGACGACTACT 61.031 60.000 0.00 0.00 0.00 2.57
1292 1540 7.964559 CGAGAAATCATGAGTCAAGCATAAAAA 59.035 33.333 0.09 0.00 0.00 1.94
1293 1541 7.334171 TCGAGAAATCATGAGTCAAGCATAAAA 59.666 33.333 0.09 0.00 0.00 1.52
1294 1542 6.818142 TCGAGAAATCATGAGTCAAGCATAAA 59.182 34.615 0.09 0.00 0.00 1.40
1295 1543 6.340522 TCGAGAAATCATGAGTCAAGCATAA 58.659 36.000 0.09 0.00 0.00 1.90
1296 1544 5.906073 TCGAGAAATCATGAGTCAAGCATA 58.094 37.500 0.09 0.00 0.00 3.14
1297 1545 4.763073 TCGAGAAATCATGAGTCAAGCAT 58.237 39.130 0.09 0.00 0.00 3.79
1306 1554 8.642432 AGGTTATACTGAATCGAGAAATCATGA 58.358 33.333 0.00 0.00 0.00 3.07
1370 1671 0.740868 CGCCGGCTTTCTTCATCTCA 60.741 55.000 26.68 0.00 0.00 3.27
1385 1686 3.929948 GAAATGAGCCGCTCGCCG 61.930 66.667 15.58 0.00 38.78 6.46
1412 1713 4.214971 GTGGTGATGATGATGATTACCAGC 59.785 45.833 8.68 1.76 37.40 4.85
1430 1731 2.372264 CTTGGAGATGGGATTGTGGTG 58.628 52.381 0.00 0.00 0.00 4.17
1431 1732 1.341383 GCTTGGAGATGGGATTGTGGT 60.341 52.381 0.00 0.00 0.00 4.16
1432 1733 1.396653 GCTTGGAGATGGGATTGTGG 58.603 55.000 0.00 0.00 0.00 4.17
1481 1782 1.097547 AAAGATGCGAGGAATGGCCG 61.098 55.000 0.00 0.00 43.43 6.13
1492 1793 5.059343 CGATGTTATACTCGGTAAAGATGCG 59.941 44.000 0.00 0.00 0.00 4.73
1494 1795 7.361127 AGTCGATGTTATACTCGGTAAAGATG 58.639 38.462 0.00 0.00 35.64 2.90
1495 1796 7.507733 AGTCGATGTTATACTCGGTAAAGAT 57.492 36.000 0.00 0.00 35.64 2.40
1507 1808 7.381408 GCACAGCAATAGTTAGTCGATGTTATA 59.619 37.037 0.00 0.00 0.00 0.98
1514 1815 3.586100 TGCACAGCAATAGTTAGTCGA 57.414 42.857 0.00 0.00 34.76 4.20
1519 1820 5.753438 GCTACAGTATGCACAGCAATAGTTA 59.247 40.000 0.00 0.00 43.62 2.24
1524 1825 2.989909 TGCTACAGTATGCACAGCAAT 58.010 42.857 0.00 0.00 43.01 3.56
1532 1833 4.242475 TGTAACAGTGTGCTACAGTATGC 58.758 43.478 0.00 0.00 42.53 3.14
1543 1847 6.969366 TGAAATTTGGAGATGTAACAGTGTG 58.031 36.000 0.00 0.00 0.00 3.82
1555 1859 5.879763 TCAGACAGGAATGAAATTTGGAGA 58.120 37.500 0.00 0.00 36.07 3.71
1556 1860 6.602406 AGATCAGACAGGAATGAAATTTGGAG 59.398 38.462 0.00 0.00 36.07 3.86
1589 1893 1.824230 GGCAGCCCATGTCACAAAATA 59.176 47.619 0.00 0.00 32.08 1.40
1601 1905 4.424711 GGATGGAACGGCAGCCCA 62.425 66.667 5.63 0.00 0.00 5.36
1602 1906 3.645268 AAGGATGGAACGGCAGCCC 62.645 63.158 5.63 0.00 0.00 5.19
1635 1939 2.347697 TCACGACTTTGAGATGACGG 57.652 50.000 0.00 0.00 0.00 4.79
1638 1942 4.058124 CAAGGTTCACGACTTTGAGATGA 58.942 43.478 0.00 0.00 45.38 2.92
1697 2001 7.415229 AGAAAATTTCACCGTTACTTTCAGAC 58.585 34.615 8.55 0.00 0.00 3.51
1706 2010 6.183360 ACAAAGCAGAGAAAATTTCACCGTTA 60.183 34.615 8.55 0.00 0.00 3.18
1751 2055 5.010112 TGCAGCTTCTAGTCATAGATGGTAC 59.990 44.000 0.00 0.00 40.17 3.34
1755 2059 5.462729 CAGTTGCAGCTTCTAGTCATAGATG 59.537 44.000 0.00 0.00 37.86 2.90
1776 2082 4.846779 AACAATCGCATGTTAAACCAGT 57.153 36.364 4.15 0.00 41.56 4.00
1790 2096 4.442706 AGATAGCACCCTGTAAACAATCG 58.557 43.478 0.00 0.00 0.00 3.34
1795 2101 7.344095 TCTAGTAAGATAGCACCCTGTAAAC 57.656 40.000 0.00 0.00 0.00 2.01
1829 2135 1.404391 CATGCATTCAGGTTCAGGAGC 59.596 52.381 0.00 0.00 0.00 4.70
1982 2288 2.486592 CCACCAAAAGTCCCACGATTAC 59.513 50.000 0.00 0.00 0.00 1.89
1988 2294 1.112916 CCACCCACCAAAAGTCCCAC 61.113 60.000 0.00 0.00 0.00 4.61
2073 2379 4.844349 ACAATACCTTACAGCCACTCAT 57.156 40.909 0.00 0.00 0.00 2.90
2236 2543 7.655490 AGAAGATCAGCAAAAATATATGGTGC 58.345 34.615 0.00 7.22 43.01 5.01
2237 2544 9.674824 GAAGAAGATCAGCAAAAATATATGGTG 57.325 33.333 0.00 8.27 44.28 4.17
2298 2605 7.868906 TTGAGTATTTGATTCAGCATCATGA 57.131 32.000 0.00 0.00 41.82 3.07
2479 2794 7.065563 CCTCAACAAATCTGGAATCTCTTAGTG 59.934 40.741 0.00 0.00 0.00 2.74
2503 2818 4.554553 TGCCTTAAGTATAGGAGTCCCT 57.445 45.455 5.25 0.00 46.62 4.20
2541 2856 1.078497 CCACACTTGCGGCATAGGA 60.078 57.895 2.28 0.00 0.00 2.94
2570 2885 4.962362 TGTTCACTCCTAGGATCAAGCATA 59.038 41.667 13.12 0.00 0.00 3.14
2673 2988 8.503196 GCCTTCACAAAAAGAAAAAGAAAAAGA 58.497 29.630 0.00 0.00 0.00 2.52
2674 2989 7.750458 GGCCTTCACAAAAAGAAAAAGAAAAAG 59.250 33.333 0.00 0.00 0.00 2.27
2675 2990 7.229506 TGGCCTTCACAAAAAGAAAAAGAAAAA 59.770 29.630 3.32 0.00 0.00 1.94
2676 2991 6.712547 TGGCCTTCACAAAAAGAAAAAGAAAA 59.287 30.769 3.32 0.00 0.00 2.29
2677 2992 6.234177 TGGCCTTCACAAAAAGAAAAAGAAA 58.766 32.000 3.32 0.00 0.00 2.52
2678 2993 5.799213 TGGCCTTCACAAAAAGAAAAAGAA 58.201 33.333 3.32 0.00 0.00 2.52
2679 2994 5.413309 TGGCCTTCACAAAAAGAAAAAGA 57.587 34.783 3.32 0.00 0.00 2.52
2680 2995 6.051074 AGATGGCCTTCACAAAAAGAAAAAG 58.949 36.000 19.98 0.00 0.00 2.27
2681 2996 5.988287 AGATGGCCTTCACAAAAAGAAAAA 58.012 33.333 19.98 0.00 0.00 1.94
2682 2997 5.612725 AGATGGCCTTCACAAAAAGAAAA 57.387 34.783 19.98 0.00 0.00 2.29
2683 2998 5.612725 AAGATGGCCTTCACAAAAAGAAA 57.387 34.783 19.98 0.00 0.00 2.52
2684 2999 6.723298 TTAAGATGGCCTTCACAAAAAGAA 57.277 33.333 19.98 0.73 36.34 2.52
2685 3000 6.916360 ATTAAGATGGCCTTCACAAAAAGA 57.084 33.333 19.98 0.00 36.34 2.52
2686 3001 7.707893 CCATATTAAGATGGCCTTCACAAAAAG 59.292 37.037 15.86 5.70 40.08 2.27
2687 3002 7.398618 TCCATATTAAGATGGCCTTCACAAAAA 59.601 33.333 21.96 7.33 45.31 1.94
2688 3003 6.894654 TCCATATTAAGATGGCCTTCACAAAA 59.105 34.615 21.96 8.88 45.31 2.44
2689 3004 6.430864 TCCATATTAAGATGGCCTTCACAAA 58.569 36.000 21.96 11.08 45.31 2.83
2690 3005 6.012337 TCCATATTAAGATGGCCTTCACAA 57.988 37.500 21.96 13.01 45.31 3.33
2691 3006 5.645056 TCCATATTAAGATGGCCTTCACA 57.355 39.130 21.96 2.62 45.31 3.58
2692 3007 6.506500 CATCCATATTAAGATGGCCTTCAC 57.493 41.667 21.96 1.49 45.31 3.18
2719 3034 0.312729 TGCACAATCAGCACTGCAAG 59.687 50.000 3.30 0.00 36.71 4.01
2724 3039 2.026641 ACAACTTGCACAATCAGCACT 58.973 42.857 0.00 0.00 42.54 4.40
2725 3040 2.033801 AGACAACTTGCACAATCAGCAC 59.966 45.455 0.00 0.00 42.54 4.40
2811 3128 6.892658 TGGACACAACTAATTGCTGTTTAT 57.107 33.333 0.00 0.00 39.66 1.40
2993 3509 2.157668 CACATACTTGGTTCTGTCGTGC 59.842 50.000 0.00 0.00 0.00 5.34
3132 3658 6.452494 TCGTTCCCATCTTTTTGTTACAAA 57.548 33.333 6.41 6.41 0.00 2.83
3144 3670 9.295825 GATCATAGATAGATATCGTTCCCATCT 57.704 37.037 0.00 3.41 37.76 2.90
3164 3690 6.212187 CCAGTCAAGATGGGTGATAGATCATA 59.788 42.308 0.00 0.00 39.30 2.15
3165 3691 5.012871 CCAGTCAAGATGGGTGATAGATCAT 59.987 44.000 0.00 0.00 39.30 2.45
3166 3692 4.346127 CCAGTCAAGATGGGTGATAGATCA 59.654 45.833 0.00 0.00 33.94 2.92
3167 3693 4.892433 CCAGTCAAGATGGGTGATAGATC 58.108 47.826 0.00 0.00 33.94 2.75
3168 3694 4.970860 CCAGTCAAGATGGGTGATAGAT 57.029 45.455 0.00 0.00 33.94 1.98
3236 3762 4.190001 AGAGCTGAACATGTAAGATGCAG 58.810 43.478 11.65 8.03 0.00 4.41
3251 3777 1.202582 GCCACGAGAAAGTAGAGCTGA 59.797 52.381 0.00 0.00 0.00 4.26
3402 3937 1.751437 GGCCAGTCCCATTACTCAAC 58.249 55.000 0.00 0.00 0.00 3.18
3416 3951 1.870064 AAATGGAAATCAGGGGCCAG 58.130 50.000 4.39 0.00 33.26 4.85
3461 3996 5.372343 AATGTGGTACTGGCATCTAATCA 57.628 39.130 0.00 0.00 0.00 2.57
3942 4478 7.011482 GTCAAACTTCCGCATCTTGATATACTT 59.989 37.037 0.00 0.00 0.00 2.24
4068 4604 0.665369 AGTAACACGTACGCACCTGC 60.665 55.000 16.72 1.18 37.81 4.85
4123 4659 7.402071 TCACATTACCTTAGTAGTTCAAGGGAT 59.598 37.037 5.43 0.00 44.75 3.85
4173 4709 1.265635 TGTGCATAAGCCACAACGAAC 59.734 47.619 0.00 0.00 41.13 3.95
4312 4852 5.953571 AGGTTTCAAGTCCTCACCTTAATT 58.046 37.500 0.00 0.00 33.89 1.40
4350 4890 9.231297 CAGAGGATTGGTTGAAGAAAATTACTA 57.769 33.333 0.00 0.00 0.00 1.82
4647 5187 1.267121 GAGTGGAGCTGTCACCCTAA 58.733 55.000 11.79 0.00 35.87 2.69
4666 5222 2.402305 GCTCCAGCACAGAATCTATCG 58.598 52.381 0.00 0.00 41.59 2.92
4732 5292 1.011595 AGTCTAGAGGCCCCTTCAGA 58.988 55.000 0.00 0.00 0.00 3.27
4793 5353 6.352516 ACTTATAATTGGAGGTGCAGAAGAG 58.647 40.000 0.00 0.00 0.00 2.85
4849 5409 2.224066 GGGTTATGTCCAGTGAGATCCG 60.224 54.545 0.00 0.00 0.00 4.18
4885 5445 4.934797 AAATGGTCTCAGGGAGAAATGA 57.065 40.909 0.00 0.00 40.59 2.57
4921 5482 2.376855 AGAAAGAAGAGAAGGGTTGGGG 59.623 50.000 0.00 0.00 0.00 4.96
4925 5486 4.284746 ACGATGAGAAAGAAGAGAAGGGTT 59.715 41.667 0.00 0.00 0.00 4.11
4927 5488 4.429108 GACGATGAGAAAGAAGAGAAGGG 58.571 47.826 0.00 0.00 0.00 3.95
4931 5496 4.081972 CCAAGGACGATGAGAAAGAAGAGA 60.082 45.833 0.00 0.00 0.00 3.10
4945 5510 1.880819 GCGGAGGTTACCAAGGACGA 61.881 60.000 3.51 0.00 0.00 4.20
4946 5511 1.447314 GCGGAGGTTACCAAGGACG 60.447 63.158 3.51 1.62 0.00 4.79
4957 5522 3.461773 CGGTGAGGATGCGGAGGT 61.462 66.667 0.00 0.00 0.00 3.85
4962 5527 3.499737 GTTGCCGGTGAGGATGCG 61.500 66.667 1.90 0.00 45.00 4.73
5011 5576 1.789464 GATGCAACGATCTTCTAGGCG 59.211 52.381 0.00 0.00 0.00 5.52
5044 5609 0.463833 GAGGAATACAACAGCGGGGG 60.464 60.000 0.00 0.00 0.00 5.40
5108 5673 2.525629 TGGTCGAGGTGAAGGCCA 60.526 61.111 5.01 0.00 40.21 5.36
5121 5686 1.265454 ACCCCCGAGTTCATCTGGTC 61.265 60.000 0.00 0.00 30.51 4.02
5128 5693 2.114411 GGCAAACCCCCGAGTTCA 59.886 61.111 0.00 0.00 0.00 3.18
5145 5710 0.031857 CTCATACTGCAGAGCTCCCG 59.968 60.000 23.35 2.85 0.00 5.14
5157 5722 2.032620 GATCCACGACCACCTCATACT 58.967 52.381 0.00 0.00 0.00 2.12
5169 5734 2.434336 CCATTGGTTCCTAGATCCACGA 59.566 50.000 0.00 0.00 32.00 4.35
5170 5735 2.434336 TCCATTGGTTCCTAGATCCACG 59.566 50.000 1.86 0.00 32.00 4.94
5310 5875 2.380064 AGGCAAACAGGGATTTCACA 57.620 45.000 0.00 0.00 0.00 3.58
5327 5892 6.472686 ACTACTTGCCATACTAAGAGAAGG 57.527 41.667 0.00 0.00 0.00 3.46
5395 5966 1.266718 TGAACGCTCAGGCACAAATTC 59.733 47.619 0.00 0.00 38.60 2.17
5446 6017 1.067776 GCTATAACCGATCCCTCCACG 60.068 57.143 0.00 0.00 0.00 4.94
5447 6018 2.249139 AGCTATAACCGATCCCTCCAC 58.751 52.381 0.00 0.00 0.00 4.02
5448 6019 2.696526 AGCTATAACCGATCCCTCCA 57.303 50.000 0.00 0.00 0.00 3.86
5476 6047 1.145571 AGGCACCACCAAGGAAGTAA 58.854 50.000 0.00 0.00 43.14 2.24
5501 6072 3.383620 TTCAGTTAGAACCGCGGTTTA 57.616 42.857 41.25 29.72 38.60 2.01
5626 6200 8.789825 TTCTAACCAAGTAACACTACAAAACA 57.210 30.769 0.00 0.00 0.00 2.83
5627 6201 9.712359 CTTTCTAACCAAGTAACACTACAAAAC 57.288 33.333 0.00 0.00 0.00 2.43
5628 6202 9.669887 TCTTTCTAACCAAGTAACACTACAAAA 57.330 29.630 0.00 0.00 0.00 2.44
5629 6203 9.841295 ATCTTTCTAACCAAGTAACACTACAAA 57.159 29.630 0.00 0.00 0.00 2.83
5636 6210 9.515226 AGCATTTATCTTTCTAACCAAGTAACA 57.485 29.630 0.00 0.00 0.00 2.41
5665 6239 0.107654 GCCCATGGAAGCGACTAACT 60.108 55.000 15.22 0.00 0.00 2.24
5716 6290 6.038356 CCTGGATCACATGAAACAAATTAGC 58.962 40.000 0.00 0.00 0.00 3.09
5717 6291 6.038356 GCCTGGATCACATGAAACAAATTAG 58.962 40.000 0.00 0.00 0.00 1.73
5718 6292 5.479724 TGCCTGGATCACATGAAACAAATTA 59.520 36.000 0.00 0.00 0.00 1.40
5719 6293 4.283978 TGCCTGGATCACATGAAACAAATT 59.716 37.500 0.00 0.00 0.00 1.82
5720 6294 3.833650 TGCCTGGATCACATGAAACAAAT 59.166 39.130 0.00 0.00 0.00 2.32
5777 6351 8.076910 TCGTTATGTAGTCCAAAATACCCTTA 57.923 34.615 0.00 0.00 0.00 2.69
5791 6365 4.707030 TCATGGTCGTTCGTTATGTAGT 57.293 40.909 0.00 0.00 0.00 2.73
5794 6368 5.838529 TCATATCATGGTCGTTCGTTATGT 58.161 37.500 0.00 0.00 0.00 2.29
5978 6554 8.578151 GGTATACTCAGACTAGAAAACCTATGG 58.422 40.741 2.25 0.00 0.00 2.74
5979 6555 9.132923 TGGTATACTCAGACTAGAAAACCTATG 57.867 37.037 2.25 0.00 0.00 2.23
5980 6556 9.884814 ATGGTATACTCAGACTAGAAAACCTAT 57.115 33.333 2.25 0.00 0.00 2.57
5981 6557 9.352191 GATGGTATACTCAGACTAGAAAACCTA 57.648 37.037 2.25 0.00 0.00 3.08
5983 6561 7.921745 GTGATGGTATACTCAGACTAGAAAACC 59.078 40.741 2.25 0.00 0.00 3.27
6000 6578 7.886629 ATGATGCTGTAAAAAGTGATGGTAT 57.113 32.000 0.00 0.00 0.00 2.73
6003 6581 7.274904 CAGAAATGATGCTGTAAAAAGTGATGG 59.725 37.037 0.00 0.00 0.00 3.51
6065 6644 2.685380 CCCGGCTCCTCCTCTGTT 60.685 66.667 0.00 0.00 0.00 3.16
6197 6777 3.322466 AGGGCCAGACACTTCCGG 61.322 66.667 6.18 0.00 0.00 5.14
6216 6796 5.904362 AAACTGTCTTTGCTCTGTTCTTT 57.096 34.783 0.00 0.00 0.00 2.52
6219 6799 5.402398 ACAAAAACTGTCTTTGCTCTGTTC 58.598 37.500 6.51 0.00 37.29 3.18
6232 6812 0.381801 CAGCAGGCGACAAAAACTGT 59.618 50.000 0.00 0.00 42.61 3.55
6233 6813 0.318107 CCAGCAGGCGACAAAAACTG 60.318 55.000 0.00 0.00 0.00 3.16
6242 6826 0.107831 ACAAGTAAACCAGCAGGCGA 59.892 50.000 0.00 0.00 39.06 5.54
6255 6839 5.011635 TCTCACACCAGCATAGAAACAAGTA 59.988 40.000 0.00 0.00 0.00 2.24
6256 6840 4.067896 CTCACACCAGCATAGAAACAAGT 58.932 43.478 0.00 0.00 0.00 3.16
6272 6856 2.687935 GGTCCTCTGATCTCTCTCACAC 59.312 54.545 0.00 0.00 0.00 3.82
6287 6871 5.411669 ACAAAAATCGATTGTACAGGTCCTC 59.588 40.000 12.25 0.00 39.14 3.71
6312 6896 2.229543 ACTGAGAAACACCGCACGTATA 59.770 45.455 0.00 0.00 0.00 1.47
6316 6900 0.655733 AAACTGAGAAACACCGCACG 59.344 50.000 0.00 0.00 0.00 5.34
6320 6904 4.552166 ACAATGAAACTGAGAAACACCG 57.448 40.909 0.00 0.00 0.00 4.94
6323 6907 9.698309 TTTTTGTAACAATGAAACTGAGAAACA 57.302 25.926 0.00 0.00 0.00 2.83
6335 6919 8.877779 CATGGTTTTCAGTTTTTGTAACAATGA 58.122 29.630 0.00 0.00 36.74 2.57
6388 6972 8.477256 TGAAACCTCAAACAAAGAAAAGATGAT 58.523 29.630 0.00 0.00 0.00 2.45
6402 6986 5.063312 CACCAAACAATGTGAAACCTCAAAC 59.937 40.000 0.00 0.00 34.36 2.93
6405 6989 4.019858 TCACCAAACAATGTGAAACCTCA 58.980 39.130 0.00 0.00 38.48 3.86
6435 7019 8.317891 TGATCACTAAACTCTCGCAAAAATAA 57.682 30.769 0.00 0.00 0.00 1.40
6436 7020 7.899178 TGATCACTAAACTCTCGCAAAAATA 57.101 32.000 0.00 0.00 0.00 1.40
6437 7021 6.801539 TGATCACTAAACTCTCGCAAAAAT 57.198 33.333 0.00 0.00 0.00 1.82
6439 7023 6.801539 AATGATCACTAAACTCTCGCAAAA 57.198 33.333 0.00 0.00 0.00 2.44
6441 7025 6.801539 AAAATGATCACTAAACTCTCGCAA 57.198 33.333 0.00 0.00 0.00 4.85
6442 7026 7.899178 TTAAAATGATCACTAAACTCTCGCA 57.101 32.000 0.00 0.00 0.00 5.10
6443 7027 9.214953 CAATTAAAATGATCACTAAACTCTCGC 57.785 33.333 0.00 0.00 0.00 5.03
6453 7037 9.696917 GTTTCCTTCACAATTAAAATGATCACT 57.303 29.630 0.00 0.00 0.00 3.41
6454 7038 8.925700 GGTTTCCTTCACAATTAAAATGATCAC 58.074 33.333 0.00 0.00 0.00 3.06
6546 7136 5.474876 CAGAATTGCCCTCTTTAAACTCTGT 59.525 40.000 0.00 0.00 0.00 3.41
6570 7160 2.157738 GACAATCTATCCCATGCAGCC 58.842 52.381 0.00 0.00 0.00 4.85
6678 7275 3.673543 AGTTGTCTCTACCCTCCCTAG 57.326 52.381 0.00 0.00 0.00 3.02
6679 7276 5.455872 CATAAGTTGTCTCTACCCTCCCTA 58.544 45.833 0.00 0.00 0.00 3.53
6680 7277 4.290942 CATAAGTTGTCTCTACCCTCCCT 58.709 47.826 0.00 0.00 0.00 4.20
6681 7278 3.388350 CCATAAGTTGTCTCTACCCTCCC 59.612 52.174 0.00 0.00 0.00 4.30
6684 7281 4.426704 ACACCATAAGTTGTCTCTACCCT 58.573 43.478 0.00 0.00 0.00 4.34
6685 7282 4.466726 AGACACCATAAGTTGTCTCTACCC 59.533 45.833 0.00 0.00 34.02 3.69
6686 7283 5.411781 CAGACACCATAAGTTGTCTCTACC 58.588 45.833 1.24 0.00 35.79 3.18
6688 7285 5.330233 TCCAGACACCATAAGTTGTCTCTA 58.670 41.667 1.24 0.00 35.79 2.43
6689 7286 4.160329 TCCAGACACCATAAGTTGTCTCT 58.840 43.478 1.24 0.00 35.79 3.10
6690 7287 4.537135 TCCAGACACCATAAGTTGTCTC 57.463 45.455 1.24 0.00 35.79 3.36
6691 7288 4.102524 TGTTCCAGACACCATAAGTTGTCT 59.897 41.667 0.00 0.00 37.34 3.41
6692 7289 4.385825 TGTTCCAGACACCATAAGTTGTC 58.614 43.478 0.00 0.00 32.00 3.18
6693 7290 4.389374 CTGTTCCAGACACCATAAGTTGT 58.611 43.478 0.00 0.00 33.82 3.32
6694 7291 3.753272 CCTGTTCCAGACACCATAAGTTG 59.247 47.826 0.00 0.00 33.82 3.16
6695 7292 3.244911 CCCTGTTCCAGACACCATAAGTT 60.245 47.826 0.00 0.00 33.82 2.66
6696 7293 2.305927 CCCTGTTCCAGACACCATAAGT 59.694 50.000 0.00 0.00 33.82 2.24
6697 7294 2.571653 TCCCTGTTCCAGACACCATAAG 59.428 50.000 0.00 0.00 33.82 1.73
6698 7295 2.626785 TCCCTGTTCCAGACACCATAA 58.373 47.619 0.00 0.00 33.82 1.90
6700 7297 1.352352 CTTCCCTGTTCCAGACACCAT 59.648 52.381 0.00 0.00 33.82 3.55
6702 7299 0.765510 ACTTCCCTGTTCCAGACACC 59.234 55.000 0.00 0.00 33.82 4.16
6737 7338 5.883673 GCACAAGGTTTACCATATACCAGAA 59.116 40.000 1.13 0.00 38.89 3.02
6746 7347 1.243902 CGTGGCACAAGGTTTACCAT 58.756 50.000 19.09 0.00 44.16 3.55
6747 7348 0.107116 ACGTGGCACAAGGTTTACCA 60.107 50.000 19.09 0.00 44.16 3.25
6748 7349 1.881591 TACGTGGCACAAGGTTTACC 58.118 50.000 19.09 0.00 44.16 2.85
6749 7350 4.632688 ACATATACGTGGCACAAGGTTTAC 59.367 41.667 19.09 0.00 44.16 2.01
6765 7451 4.083749 TGCACGTTCAAACCACACATATAC 60.084 41.667 0.00 0.00 0.00 1.47
6769 7455 1.098869 TGCACGTTCAAACCACACAT 58.901 45.000 0.00 0.00 0.00 3.21
6772 7458 2.724977 TTTTGCACGTTCAAACCACA 57.275 40.000 12.95 0.00 35.86 4.17
6774 7460 3.026630 TGTTTTTGCACGTTCAAACCA 57.973 38.095 12.95 9.93 35.86 3.67
6798 7504 1.000283 ACTTGACTCTGAGGTCGCTTG 60.000 52.381 9.85 0.00 38.91 4.01
6799 7505 1.333177 ACTTGACTCTGAGGTCGCTT 58.667 50.000 9.85 0.00 38.91 4.68
6809 7515 3.166679 GGGACCTGACTTACTTGACTCT 58.833 50.000 0.00 0.00 0.00 3.24
6841 7558 1.202830 TGTCTGCCGGTACAACCATTT 60.203 47.619 1.90 0.00 38.47 2.32
6844 7561 1.369692 CTGTCTGCCGGTACAACCA 59.630 57.895 1.90 0.00 38.47 3.67
6845 7562 1.375523 CCTGTCTGCCGGTACAACC 60.376 63.158 1.90 0.00 34.05 3.77
6846 7563 2.033194 GCCTGTCTGCCGGTACAAC 61.033 63.158 1.90 0.00 0.00 3.32
6847 7564 2.345991 GCCTGTCTGCCGGTACAA 59.654 61.111 1.90 0.00 0.00 2.41
6850 7567 3.755628 GACGCCTGTCTGCCGGTA 61.756 66.667 1.90 0.00 42.08 4.02
6859 7580 6.875076 ACTAGATTTATTGTAAGACGCCTGT 58.125 36.000 0.00 0.00 0.00 4.00
6863 7584 7.042725 TGCATGACTAGATTTATTGTAAGACGC 60.043 37.037 0.00 0.00 0.00 5.19
6954 8001 6.814043 TCTCTTGGATGATGATGACTACAAG 58.186 40.000 0.00 0.00 36.37 3.16
6955 8002 6.796785 TCTCTTGGATGATGATGACTACAA 57.203 37.500 0.00 0.00 0.00 2.41
6956 8003 6.796785 TTCTCTTGGATGATGATGACTACA 57.203 37.500 0.00 0.00 0.00 2.74
6957 8004 8.674263 AAATTCTCTTGGATGATGATGACTAC 57.326 34.615 0.00 0.00 0.00 2.73
6959 8006 8.492782 ACTAAATTCTCTTGGATGATGATGACT 58.507 33.333 0.00 0.00 0.00 3.41
6962 8009 8.447924 ACACTAAATTCTCTTGGATGATGATG 57.552 34.615 0.00 0.00 0.00 3.07
6963 8010 7.440556 CGACACTAAATTCTCTTGGATGATGAT 59.559 37.037 0.00 0.00 0.00 2.45
6967 8014 4.870426 GCGACACTAAATTCTCTTGGATGA 59.130 41.667 0.00 0.00 0.00 2.92
6969 8016 4.192317 GGCGACACTAAATTCTCTTGGAT 58.808 43.478 0.00 0.00 0.00 3.41
6973 8020 2.618053 CCGGCGACACTAAATTCTCTT 58.382 47.619 9.30 0.00 0.00 2.85
6975 8022 0.651031 GCCGGCGACACTAAATTCTC 59.349 55.000 12.58 0.00 0.00 2.87
6987 8034 1.871039 GCAATTAGATTAAGCCGGCGA 59.129 47.619 23.20 10.93 0.00 5.54
6990 8037 4.984161 CCAAATGCAATTAGATTAAGCCGG 59.016 41.667 0.00 0.00 33.67 6.13
7064 8117 1.373497 GTCAGTGACTCAGTGCCCG 60.373 63.158 16.26 0.00 35.04 6.13
7093 8146 1.804326 CAGATTGGCGCTGCTTTGC 60.804 57.895 7.64 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.