Multiple sequence alignment - TraesCS3D01G067500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G067500 chr3D 100.000 3728 0 0 1 3728 29883019 29879292 0.000000e+00 6885.0
1 TraesCS3D01G067500 chr3A 87.535 1412 98 31 1793 3175 40823981 40822619 0.000000e+00 1561.0
2 TraesCS3D01G067500 chr3A 91.327 761 45 8 2218 2978 40692371 40691632 0.000000e+00 1020.0
3 TraesCS3D01G067500 chr3A 91.327 761 45 8 2218 2978 40743108 40742369 0.000000e+00 1020.0
4 TraesCS3D01G067500 chr3A 91.064 761 47 8 2218 2978 40798366 40797627 0.000000e+00 1009.0
5 TraesCS3D01G067500 chr3A 90.933 761 48 8 2218 2978 40731832 40731093 0.000000e+00 1003.0
6 TraesCS3D01G067500 chr3A 90.407 761 48 9 2218 2978 40754377 40753642 0.000000e+00 977.0
7 TraesCS3D01G067500 chr3A 84.756 656 48 33 1001 1641 40825022 40824404 8.850000e-171 610.0
8 TraesCS3D01G067500 chr3A 89.978 459 18 8 3281 3728 40819608 40819167 5.400000e-158 568.0
9 TraesCS3D01G067500 chr3A 77.246 501 60 26 96 547 40826333 40825838 1.030000e-60 244.0
10 TraesCS3D01G067500 chr3A 86.996 223 16 11 530 743 40825531 40825313 4.810000e-59 239.0
11 TraesCS3D01G067500 chr3A 91.935 124 6 1 1666 1789 40824133 40824014 1.780000e-38 171.0
12 TraesCS3D01G067500 chr3A 100.000 62 0 0 3168 3229 40822467 40822406 8.460000e-22 115.0
13 TraesCS3D01G067500 chr3B 85.052 1532 131 37 2215 3716 50791042 50789579 0.000000e+00 1471.0
14 TraesCS3D01G067500 chr3B 96.281 242 9 0 1274 1515 50792364 50792123 7.500000e-107 398.0
15 TraesCS3D01G067500 chr3B 80.677 502 45 32 1666 2144 50791758 50791286 3.570000e-90 342.0
16 TraesCS3D01G067500 chr3B 95.789 190 8 0 978 1167 50792634 50792445 1.300000e-79 307.0
17 TraesCS3D01G067500 chr3B 84.967 306 30 11 95 385 50793625 50793321 2.820000e-76 296.0
18 TraesCS3D01G067500 chr3B 82.109 313 20 16 541 832 50793071 50792774 6.220000e-58 235.0
19 TraesCS3D01G067500 chrUn 85.933 327 31 10 1572 1885 53021568 53021892 5.970000e-88 335.0
20 TraesCS3D01G067500 chrUn 85.933 327 31 10 1572 1885 294170881 294171205 5.970000e-88 335.0
21 TraesCS3D01G067500 chr6B 78.087 575 83 31 1574 2139 303227123 303227663 1.290000e-84 324.0
22 TraesCS3D01G067500 chr7D 80.475 379 37 27 1666 2028 187342280 187342637 4.780000e-64 255.0
23 TraesCS3D01G067500 chr1D 95.349 43 1 1 3062 3104 444346747 444346706 2.400000e-07 67.6
24 TraesCS3D01G067500 chr6D 90.909 44 4 0 3060 3103 108449390 108449347 4.020000e-05 60.2
25 TraesCS3D01G067500 chr2B 100.000 32 0 0 3059 3090 398700835 398700804 4.020000e-05 60.2
26 TraesCS3D01G067500 chr4A 100.000 28 0 0 3059 3086 107520561 107520588 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G067500 chr3D 29879292 29883019 3727 True 6885.000000 6885 100.000000 1 3728 1 chr3D.!!$R1 3727
1 TraesCS3D01G067500 chr3A 40691632 40692371 739 True 1020.000000 1020 91.327000 2218 2978 1 chr3A.!!$R1 760
2 TraesCS3D01G067500 chr3A 40742369 40743108 739 True 1020.000000 1020 91.327000 2218 2978 1 chr3A.!!$R3 760
3 TraesCS3D01G067500 chr3A 40797627 40798366 739 True 1009.000000 1009 91.064000 2218 2978 1 chr3A.!!$R5 760
4 TraesCS3D01G067500 chr3A 40731093 40731832 739 True 1003.000000 1003 90.933000 2218 2978 1 chr3A.!!$R2 760
5 TraesCS3D01G067500 chr3A 40753642 40754377 735 True 977.000000 977 90.407000 2218 2978 1 chr3A.!!$R4 760
6 TraesCS3D01G067500 chr3A 40819167 40826333 7166 True 501.142857 1561 88.349429 96 3728 7 chr3A.!!$R6 3632
7 TraesCS3D01G067500 chr3B 50789579 50793625 4046 True 508.166667 1471 87.479167 95 3716 6 chr3B.!!$R1 3621
8 TraesCS3D01G067500 chr6B 303227123 303227663 540 False 324.000000 324 78.087000 1574 2139 1 chr6B.!!$F1 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
319 336 0.413832 TTGCTGGGAGGGTAGAGACT 59.586 55.0 0.0 0.0 0.0 3.24 F
1226 1801 0.388520 CACATCTTCTGGTGCGTCGA 60.389 55.0 0.0 0.0 0.0 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1236 1811 0.037447 TGGCCCAACACATCGATCAA 59.963 50.0 0.00 0.0 0.0 2.57 R
2743 3864 0.179000 CAACGCTTAGCTCTCCCCAT 59.821 55.0 1.76 0.0 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.952030 TGATGTACTTATTTTCTACATGACCAA 57.048 29.630 0.00 0.00 32.41 3.67
38 39 9.912634 TTTCTACATGACCAAAATCATCTTTTC 57.087 29.630 0.00 0.00 37.20 2.29
39 40 8.868522 TCTACATGACCAAAATCATCTTTTCT 57.131 30.769 0.00 0.00 37.20 2.52
40 41 9.300681 TCTACATGACCAAAATCATCTTTTCTT 57.699 29.630 0.00 0.00 37.20 2.52
41 42 9.918630 CTACATGACCAAAATCATCTTTTCTTT 57.081 29.630 0.00 0.00 37.20 2.52
42 43 8.597662 ACATGACCAAAATCATCTTTTCTTTG 57.402 30.769 0.00 0.00 37.20 2.77
43 44 8.206189 ACATGACCAAAATCATCTTTTCTTTGT 58.794 29.630 0.00 0.00 37.20 2.83
44 45 9.048446 CATGACCAAAATCATCTTTTCTTTGTT 57.952 29.630 0.00 0.00 37.20 2.83
45 46 9.617523 ATGACCAAAATCATCTTTTCTTTGTTT 57.382 25.926 0.00 0.00 33.99 2.83
46 47 8.881743 TGACCAAAATCATCTTTTCTTTGTTTG 58.118 29.630 0.00 0.00 0.00 2.93
47 48 9.097257 GACCAAAATCATCTTTTCTTTGTTTGA 57.903 29.630 0.00 0.00 0.00 2.69
48 49 9.101655 ACCAAAATCATCTTTTCTTTGTTTGAG 57.898 29.630 0.00 0.00 0.00 3.02
49 50 8.553696 CCAAAATCATCTTTTCTTTGTTTGAGG 58.446 33.333 0.00 0.00 0.00 3.86
50 51 9.101655 CAAAATCATCTTTTCTTTGTTTGAGGT 57.898 29.630 0.00 0.00 0.00 3.85
51 52 9.671279 AAAATCATCTTTTCTTTGTTTGAGGTT 57.329 25.926 0.00 0.00 0.00 3.50
52 53 9.671279 AAATCATCTTTTCTTTGTTTGAGGTTT 57.329 25.926 0.00 0.00 0.00 3.27
53 54 8.877808 ATCATCTTTTCTTTGTTTGAGGTTTC 57.122 30.769 0.00 0.00 0.00 2.78
54 55 7.835822 TCATCTTTTCTTTGTTTGAGGTTTCA 58.164 30.769 0.00 0.00 0.00 2.69
55 56 7.759433 TCATCTTTTCTTTGTTTGAGGTTTCAC 59.241 33.333 0.00 0.00 31.71 3.18
56 57 6.987386 TCTTTTCTTTGTTTGAGGTTTCACA 58.013 32.000 0.00 0.00 31.71 3.58
57 58 7.610865 TCTTTTCTTTGTTTGAGGTTTCACAT 58.389 30.769 0.00 0.00 31.71 3.21
58 59 8.093927 TCTTTTCTTTGTTTGAGGTTTCACATT 58.906 29.630 0.00 0.00 31.71 2.71
59 60 7.593875 TTTCTTTGTTTGAGGTTTCACATTG 57.406 32.000 0.00 0.00 31.71 2.82
60 61 6.279513 TCTTTGTTTGAGGTTTCACATTGT 57.720 33.333 0.00 0.00 31.71 2.71
61 62 6.696411 TCTTTGTTTGAGGTTTCACATTGTT 58.304 32.000 0.00 0.00 31.71 2.83
62 63 7.158021 TCTTTGTTTGAGGTTTCACATTGTTT 58.842 30.769 0.00 0.00 31.71 2.83
63 64 6.718454 TTGTTTGAGGTTTCACATTGTTTG 57.282 33.333 0.00 0.00 31.71 2.93
64 65 5.174395 TGTTTGAGGTTTCACATTGTTTGG 58.826 37.500 0.00 0.00 31.71 3.28
65 66 5.175127 GTTTGAGGTTTCACATTGTTTGGT 58.825 37.500 0.00 0.00 31.71 3.67
66 67 4.383850 TGAGGTTTCACATTGTTTGGTG 57.616 40.909 0.00 0.00 36.36 4.17
67 68 4.019858 TGAGGTTTCACATTGTTTGGTGA 58.980 39.130 0.00 0.00 41.93 4.02
68 69 4.648762 TGAGGTTTCACATTGTTTGGTGAT 59.351 37.500 0.00 0.00 43.01 3.06
69 70 5.200368 AGGTTTCACATTGTTTGGTGATC 57.800 39.130 0.00 0.00 43.01 2.92
70 71 4.895297 AGGTTTCACATTGTTTGGTGATCT 59.105 37.500 0.00 0.00 43.01 2.75
71 72 5.363580 AGGTTTCACATTGTTTGGTGATCTT 59.636 36.000 0.00 0.00 43.01 2.40
72 73 6.048509 GGTTTCACATTGTTTGGTGATCTTT 58.951 36.000 0.00 0.00 43.01 2.52
73 74 6.538381 GGTTTCACATTGTTTGGTGATCTTTT 59.462 34.615 0.00 0.00 43.01 2.27
74 75 7.065683 GGTTTCACATTGTTTGGTGATCTTTTT 59.934 33.333 0.00 0.00 43.01 1.94
126 130 8.443953 TTTTAATTGTGAAGGAAACCAATTGG 57.556 30.769 23.31 23.31 37.87 3.16
145 149 0.451783 GTGGACCCGCTAAATGCTTG 59.548 55.000 0.00 0.00 40.11 4.01
147 151 0.733150 GGACCCGCTAAATGCTTGAC 59.267 55.000 0.00 0.00 40.11 3.18
210 220 5.474876 ACAGAGTTTAAAGAGGGCAATTCTG 59.525 40.000 0.00 0.00 35.63 3.02
254 264 2.224769 CCTTGTAGCTTGGGAGTTTGGA 60.225 50.000 0.00 0.00 0.00 3.53
318 335 1.276622 TTTGCTGGGAGGGTAGAGAC 58.723 55.000 0.00 0.00 0.00 3.36
319 336 0.413832 TTGCTGGGAGGGTAGAGACT 59.586 55.000 0.00 0.00 0.00 3.24
320 337 1.305886 TGCTGGGAGGGTAGAGACTA 58.694 55.000 0.00 0.00 0.00 2.59
321 338 1.215673 TGCTGGGAGGGTAGAGACTAG 59.784 57.143 0.00 0.00 0.00 2.57
324 341 1.275416 TGGGAGGGTAGAGACTAGGGA 60.275 57.143 0.00 0.00 0.00 4.20
325 342 1.426215 GGGAGGGTAGAGACTAGGGAG 59.574 61.905 0.00 0.00 0.00 4.30
326 343 1.426215 GGAGGGTAGAGACTAGGGAGG 59.574 61.905 0.00 0.00 0.00 4.30
328 345 1.233857 GGGTAGAGACTAGGGAGGGT 58.766 60.000 0.00 0.00 0.00 4.34
329 346 2.020239 AGGGTAGAGACTAGGGAGGGTA 60.020 54.545 0.00 0.00 0.00 3.69
330 347 2.376181 GGGTAGAGACTAGGGAGGGTAG 59.624 59.091 0.00 0.00 0.00 3.18
331 348 3.325605 GGTAGAGACTAGGGAGGGTAGA 58.674 54.545 0.00 0.00 0.00 2.59
332 349 3.328637 GGTAGAGACTAGGGAGGGTAGAG 59.671 56.522 0.00 0.00 0.00 2.43
333 350 3.441505 AGAGACTAGGGAGGGTAGAGA 57.558 52.381 0.00 0.00 0.00 3.10
334 351 3.050835 AGAGACTAGGGAGGGTAGAGAC 58.949 54.545 0.00 0.00 0.00 3.36
335 352 2.778850 GAGACTAGGGAGGGTAGAGACA 59.221 54.545 0.00 0.00 0.00 3.41
336 353 3.199671 AGACTAGGGAGGGTAGAGACAA 58.800 50.000 0.00 0.00 0.00 3.18
337 354 3.053470 AGACTAGGGAGGGTAGAGACAAC 60.053 52.174 0.00 0.00 0.00 3.32
338 355 2.927685 ACTAGGGAGGGTAGAGACAACT 59.072 50.000 0.00 0.00 0.00 3.16
340 357 4.543337 ACTAGGGAGGGTAGAGACAACTTA 59.457 45.833 0.00 0.00 0.00 2.24
342 359 4.290942 AGGGAGGGTAGAGACAACTTATG 58.709 47.826 0.00 0.00 0.00 1.90
377 398 3.181455 GGGAAGTTGTTTTTGATGGCCTT 60.181 43.478 3.32 0.00 0.00 4.35
386 407 6.013379 TGTTTTTGATGGCCTTTCTGGTATA 58.987 36.000 3.32 0.00 38.35 1.47
387 408 6.667414 TGTTTTTGATGGCCTTTCTGGTATAT 59.333 34.615 3.32 0.00 38.35 0.86
388 409 6.713762 TTTTGATGGCCTTTCTGGTATATG 57.286 37.500 3.32 0.00 38.35 1.78
389 410 4.371624 TGATGGCCTTTCTGGTATATGG 57.628 45.455 3.32 0.00 38.35 2.74
405 511 1.243902 ATGGTAAACCTTGTGCCACG 58.756 50.000 0.02 0.00 36.82 4.94
409 515 3.007723 TGGTAAACCTTGTGCCACGTATA 59.992 43.478 0.02 0.00 36.82 1.47
412 518 3.343941 AACCTTGTGCCACGTATATGT 57.656 42.857 0.00 0.00 0.00 2.29
414 520 2.027561 ACCTTGTGCCACGTATATGTGT 60.028 45.455 20.91 0.34 38.20 3.72
438 564 4.026886 GGTTTGAACGTGCAAAAACATCTC 60.027 41.667 23.17 8.92 39.26 2.75
439 565 4.362932 TTGAACGTGCAAAAACATCTCA 57.637 36.364 6.47 0.00 0.00 3.27
449 575 2.839486 AAACATCTCAAGCGACCTCA 57.161 45.000 0.00 0.00 0.00 3.86
459 585 2.201921 AGCGACCTCAGAGTCAAGTA 57.798 50.000 0.00 0.00 36.52 2.24
461 587 2.490115 AGCGACCTCAGAGTCAAGTAAG 59.510 50.000 0.00 0.00 36.52 2.34
462 588 2.229302 GCGACCTCAGAGTCAAGTAAGT 59.771 50.000 0.00 0.00 36.52 2.24
481 618 7.120716 AGTAAGTCAGGTCCCTAAAACAAAAA 58.879 34.615 0.00 0.00 0.00 1.94
499 640 2.279935 AAAATGGTTGTACCGGCAGA 57.720 45.000 0.00 0.00 42.58 4.26
503 644 1.375523 GGTTGTACCGGCAGACAGG 60.376 63.158 0.00 0.00 0.00 4.00
557 1022 5.619981 GCTTAGTCCAATTGCAACTTGTAGG 60.620 44.000 14.56 0.00 0.00 3.18
560 1025 4.892934 AGTCCAATTGCAACTTGTAGGAAA 59.107 37.500 0.00 0.00 0.00 3.13
603 1070 5.590530 AAAAATGGTTGCACTTGTAGTCA 57.409 34.783 0.00 0.00 0.00 3.41
607 1074 4.019792 TGGTTGCACTTGTAGTCATCAT 57.980 40.909 0.00 0.00 0.00 2.45
609 1076 4.002982 GGTTGCACTTGTAGTCATCATCA 58.997 43.478 0.00 0.00 0.00 3.07
613 1080 4.080975 TGCACTTGTAGTCATCATCATCCA 60.081 41.667 0.00 0.00 0.00 3.41
615 1082 5.007430 GCACTTGTAGTCATCATCATCCAAG 59.993 44.000 0.00 0.00 35.40 3.61
627 1094 8.270030 TCATCATCATCCAAGAGAATTTAGTGT 58.730 33.333 0.00 0.00 0.00 3.55
630 1097 4.870426 TCATCCAAGAGAATTTAGTGTCGC 59.130 41.667 0.00 0.00 0.00 5.19
649 1116 2.226437 CGCCGGCTTAATCTAATTGCAT 59.774 45.455 26.68 0.00 0.00 3.96
733 1206 1.374125 TCACTGACGACGCCATTGG 60.374 57.895 0.00 0.00 0.00 3.16
784 1289 2.744709 GCAGCCTTTTCCCGCGTA 60.745 61.111 4.92 0.00 0.00 4.42
832 1337 4.501714 GCGCGGGACCATCACGTA 62.502 66.667 8.83 0.00 46.67 3.57
833 1338 2.415843 CGCGGGACCATCACGTAT 59.584 61.111 0.00 0.00 46.67 3.06
835 1340 1.440060 GCGGGACCATCACGTATCA 59.560 57.895 2.02 0.00 46.67 2.15
836 1341 0.874607 GCGGGACCATCACGTATCAC 60.875 60.000 2.02 0.00 46.67 3.06
837 1342 0.458260 CGGGACCATCACGTATCACA 59.542 55.000 0.00 0.00 38.72 3.58
838 1343 1.068588 CGGGACCATCACGTATCACAT 59.931 52.381 0.00 0.00 38.72 3.21
839 1344 2.483876 GGGACCATCACGTATCACATG 58.516 52.381 0.00 0.00 0.00 3.21
840 1345 2.102420 GGGACCATCACGTATCACATGA 59.898 50.000 0.00 0.00 0.00 3.07
841 1346 3.123804 GGACCATCACGTATCACATGAC 58.876 50.000 0.00 0.00 0.00 3.06
842 1347 3.123804 GACCATCACGTATCACATGACC 58.876 50.000 0.00 0.00 0.00 4.02
843 1348 2.499693 ACCATCACGTATCACATGACCA 59.500 45.455 0.00 0.00 0.00 4.02
844 1349 2.866156 CCATCACGTATCACATGACCAC 59.134 50.000 0.00 0.00 0.00 4.16
845 1350 3.430790 CCATCACGTATCACATGACCACT 60.431 47.826 0.00 0.00 0.00 4.00
846 1351 3.230743 TCACGTATCACATGACCACTG 57.769 47.619 0.00 0.00 0.00 3.66
847 1352 2.094234 TCACGTATCACATGACCACTGG 60.094 50.000 0.00 0.00 0.00 4.00
848 1353 1.899814 ACGTATCACATGACCACTGGT 59.100 47.619 0.00 0.00 39.44 4.00
849 1354 2.301870 ACGTATCACATGACCACTGGTT 59.698 45.455 1.13 0.00 35.25 3.67
850 1355 2.672874 CGTATCACATGACCACTGGTTG 59.327 50.000 1.13 0.00 35.25 3.77
919 1424 1.299544 TATATGACGGCCGTGCGTG 60.300 57.895 39.65 2.70 0.00 5.34
934 1439 4.314440 GTGGGTGTGGCTCGCTGA 62.314 66.667 0.00 0.00 0.00 4.26
959 1491 2.124151 GCATACAGGTGGGGCAGG 60.124 66.667 0.00 0.00 0.00 4.85
973 1505 2.202797 CAGGTGGCTGGACGATCG 60.203 66.667 14.88 14.88 0.00 3.69
975 1507 2.105128 GGTGGCTGGACGATCGAG 59.895 66.667 24.34 10.20 0.00 4.04
986 1532 1.007964 CGATCGAGCTGGTAGCAGG 60.008 63.158 22.69 7.16 45.56 4.85
999 1553 2.895680 GCAGGAGCTGATCGACCA 59.104 61.111 0.00 0.00 37.91 4.02
1014 1568 2.923035 CCAATGGGGTGGGCGATA 59.077 61.111 0.00 0.00 34.77 2.92
1187 1762 1.134670 CATCCCGTCTCCTCACTTTCC 60.135 57.143 0.00 0.00 0.00 3.13
1188 1763 0.903454 TCCCGTCTCCTCACTTTCCC 60.903 60.000 0.00 0.00 0.00 3.97
1190 1765 0.977395 CCGTCTCCTCACTTTCCCTT 59.023 55.000 0.00 0.00 0.00 3.95
1191 1766 1.066787 CCGTCTCCTCACTTTCCCTTC 60.067 57.143 0.00 0.00 0.00 3.46
1193 1768 2.094442 CGTCTCCTCACTTTCCCTTCTC 60.094 54.545 0.00 0.00 0.00 2.87
1195 1770 2.158158 TCTCCTCACTTTCCCTTCTCCA 60.158 50.000 0.00 0.00 0.00 3.86
1197 1772 2.840651 TCCTCACTTTCCCTTCTCCATC 59.159 50.000 0.00 0.00 0.00 3.51
1198 1773 2.843113 CCTCACTTTCCCTTCTCCATCT 59.157 50.000 0.00 0.00 0.00 2.90
1200 1775 4.512484 CTCACTTTCCCTTCTCCATCTTC 58.488 47.826 0.00 0.00 0.00 2.87
1202 1777 4.599241 TCACTTTCCCTTCTCCATCTTCTT 59.401 41.667 0.00 0.00 0.00 2.52
1203 1778 4.940654 CACTTTCCCTTCTCCATCTTCTTC 59.059 45.833 0.00 0.00 0.00 2.87
1205 1780 6.026186 ACTTTCCCTTCTCCATCTTCTTCTA 58.974 40.000 0.00 0.00 0.00 2.10
1206 1781 6.156083 ACTTTCCCTTCTCCATCTTCTTCTAG 59.844 42.308 0.00 0.00 0.00 2.43
1207 1782 3.964031 TCCCTTCTCCATCTTCTTCTAGC 59.036 47.826 0.00 0.00 0.00 3.42
1208 1783 3.708631 CCCTTCTCCATCTTCTTCTAGCA 59.291 47.826 0.00 0.00 0.00 3.49
1209 1784 4.442753 CCCTTCTCCATCTTCTTCTAGCAC 60.443 50.000 0.00 0.00 0.00 4.40
1210 1785 4.161189 CCTTCTCCATCTTCTTCTAGCACA 59.839 45.833 0.00 0.00 0.00 4.57
1211 1786 5.163322 CCTTCTCCATCTTCTTCTAGCACAT 60.163 44.000 0.00 0.00 0.00 3.21
1212 1787 5.528043 TCTCCATCTTCTTCTAGCACATC 57.472 43.478 0.00 0.00 0.00 3.06
1213 1788 5.207354 TCTCCATCTTCTTCTAGCACATCT 58.793 41.667 0.00 0.00 0.00 2.90
1216 1791 5.660417 TCCATCTTCTTCTAGCACATCTTCT 59.340 40.000 0.00 0.00 0.00 2.85
1218 1793 5.336150 TCTTCTTCTAGCACATCTTCTGG 57.664 43.478 0.00 0.00 0.00 3.86
1225 1800 2.073307 CACATCTTCTGGTGCGTCG 58.927 57.895 0.00 0.00 0.00 5.12
1226 1801 0.388520 CACATCTTCTGGTGCGTCGA 60.389 55.000 0.00 0.00 0.00 4.20
1227 1802 0.388649 ACATCTTCTGGTGCGTCGAC 60.389 55.000 5.18 5.18 0.00 4.20
1228 1803 1.154016 ATCTTCTGGTGCGTCGACG 60.154 57.895 32.57 32.57 43.27 5.12
1245 1820 3.504043 CGCAAGTGCTTGATCGATG 57.496 52.632 15.31 0.00 42.93 3.84
1246 1821 0.723414 CGCAAGTGCTTGATCGATGT 59.277 50.000 15.31 0.00 42.93 3.06
1247 1822 1.528400 CGCAAGTGCTTGATCGATGTG 60.528 52.381 15.31 0.00 42.93 3.21
1257 1836 1.705337 GATCGATGTGTTGGGCCACG 61.705 60.000 5.23 5.51 38.20 4.94
1260 1839 4.947147 ATGTGTTGGGCCACGCGT 62.947 61.111 5.23 5.58 38.20 6.01
1262 1841 3.719144 GTGTTGGGCCACGCGTAC 61.719 66.667 13.44 7.26 0.00 3.67
1335 1914 4.003788 AAGGGGTCGGTGCTGACG 62.004 66.667 5.22 0.00 39.83 4.35
1515 2094 3.612247 CTTCGCCAGGGACCAGGTG 62.612 68.421 0.00 6.98 36.11 4.00
1518 2124 4.416738 GCCAGGGACCAGGTGCTC 62.417 72.222 11.48 1.20 0.00 4.26
1519 2125 2.608988 CCAGGGACCAGGTGCTCT 60.609 66.667 11.48 3.69 0.00 4.09
1521 2127 1.617947 CCAGGGACCAGGTGCTCTAC 61.618 65.000 11.48 0.00 0.00 2.59
1524 2130 1.112950 GGGACCAGGTGCTCTACTAC 58.887 60.000 11.48 0.00 0.00 2.73
1525 2131 1.618888 GGGACCAGGTGCTCTACTACA 60.619 57.143 11.48 0.00 0.00 2.74
1533 2139 5.452077 CCAGGTGCTCTACTACAAATCCTAC 60.452 48.000 0.00 0.00 0.00 3.18
1534 2140 4.650131 AGGTGCTCTACTACAAATCCTACC 59.350 45.833 0.00 0.00 0.00 3.18
1537 2143 6.043411 GTGCTCTACTACAAATCCTACCTTG 58.957 44.000 0.00 0.00 0.00 3.61
1542 2148 8.431910 TCTACTACAAATCCTACCTTGAACTT 57.568 34.615 0.00 0.00 0.00 2.66
1543 2149 8.877195 TCTACTACAAATCCTACCTTGAACTTT 58.123 33.333 0.00 0.00 0.00 2.66
1564 2170 8.747538 ACTTTCAAGTTTGAACTAGTAATGGT 57.252 30.769 6.79 0.00 45.99 3.55
1565 2171 9.841295 ACTTTCAAGTTTGAACTAGTAATGGTA 57.159 29.630 6.79 0.00 45.99 3.25
1567 2173 9.841295 TTTCAAGTTTGAACTAGTAATGGTAGT 57.159 29.630 6.79 0.00 45.99 2.73
1568 2174 9.485206 TTCAAGTTTGAACTAGTAATGGTAGTC 57.515 33.333 0.00 0.00 41.88 2.59
1569 2175 7.811236 TCAAGTTTGAACTAGTAATGGTAGTCG 59.189 37.037 0.00 0.00 38.57 4.18
1570 2176 7.224522 AGTTTGAACTAGTAATGGTAGTCGT 57.775 36.000 0.00 0.00 37.52 4.34
1587 2194 9.093970 TGGTAGTCGTATTTCATAATCAAACTG 57.906 33.333 0.00 0.00 0.00 3.16
1601 2208 1.535462 CAAACTGGTTGTCCATCCGAC 59.465 52.381 0.00 0.00 43.43 4.79
1611 2218 3.136808 GTCCATCCGACAAGAATTTGC 57.863 47.619 0.00 0.00 41.54 3.68
1644 2251 6.785488 TCTGAATTATCTTGTGTGTGTGTC 57.215 37.500 0.00 0.00 0.00 3.67
1645 2252 5.405269 TCTGAATTATCTTGTGTGTGTGTCG 59.595 40.000 0.00 0.00 0.00 4.35
1649 2256 1.355005 TCTTGTGTGTGTGTCGTGTG 58.645 50.000 0.00 0.00 0.00 3.82
1651 2258 0.793250 TTGTGTGTGTGTCGTGTGTG 59.207 50.000 0.00 0.00 0.00 3.82
1654 2261 1.081556 TGTGTGTGTCGTGTGTGCTC 61.082 55.000 0.00 0.00 0.00 4.26
1657 2264 0.806102 GTGTGTCGTGTGTGCTCTGT 60.806 55.000 0.00 0.00 0.00 3.41
1658 2265 0.108377 TGTGTCGTGTGTGCTCTGTT 60.108 50.000 0.00 0.00 0.00 3.16
1659 2266 0.577269 GTGTCGTGTGTGCTCTGTTC 59.423 55.000 0.00 0.00 0.00 3.18
1661 2268 1.132588 GTCGTGTGTGCTCTGTTCTC 58.867 55.000 0.00 0.00 0.00 2.87
1663 2270 1.135046 CGTGTGTGCTCTGTTCTCTG 58.865 55.000 0.00 0.00 0.00 3.35
1765 2621 5.012664 CCAACAGGGTGCAGGTATATATACA 59.987 44.000 21.56 1.55 34.98 2.29
1766 2622 6.296432 CCAACAGGGTGCAGGTATATATACAT 60.296 42.308 21.56 13.84 34.98 2.29
1767 2623 7.093068 CCAACAGGGTGCAGGTATATATACATA 60.093 40.741 21.56 1.14 34.98 2.29
1768 2624 7.419711 ACAGGGTGCAGGTATATATACATAC 57.580 40.000 21.56 11.97 34.98 2.39
1791 2681 1.869767 CTGTCTGTCACACAGCTTTCC 59.130 52.381 0.00 0.00 45.54 3.13
1824 2714 8.518720 TTTGATATCATATCCTTCCCCACTTA 57.481 34.615 6.17 0.00 0.00 2.24
1853 2756 9.747898 ACAAACAAAAGGGTATATATGTTCAGA 57.252 29.630 0.00 0.00 31.19 3.27
1887 2797 4.927782 TGGCACGTGACCTGGCAC 62.928 66.667 21.02 10.12 39.14 5.01
1991 2906 0.807667 GCCCTGCGTACTCTGTCATG 60.808 60.000 0.00 0.00 0.00 3.07
2000 2921 4.553156 GCGTACTCTGTCATGCTACTACTC 60.553 50.000 0.00 0.00 0.00 2.59
2002 2930 5.277106 CGTACTCTGTCATGCTACTACTCTG 60.277 48.000 0.00 0.00 0.00 3.35
2012 2940 3.172824 GCTACTACTCTGTTCGTTCTGC 58.827 50.000 0.00 0.00 0.00 4.26
2105 3034 2.608268 CGGATTCATTGTTGCATTGCA 58.392 42.857 7.38 7.38 36.47 4.08
2126 3059 6.182627 TGCACAGAGATAACCAAATCAGAAT 58.817 36.000 0.00 0.00 0.00 2.40
2127 3060 6.094464 TGCACAGAGATAACCAAATCAGAATG 59.906 38.462 0.00 0.00 37.54 2.67
2194 3308 3.768406 TCATGTGTGTTTGTTCAGCAAC 58.232 40.909 0.00 0.00 36.72 4.17
2245 3363 0.962356 ATTCTTGCAACCCTCCTGCG 60.962 55.000 0.00 0.00 42.97 5.18
2289 3407 1.975680 ACCCAGTACAACTACACCCAG 59.024 52.381 0.00 0.00 0.00 4.45
2296 3414 1.086696 CAACTACACCCAGCCAATCG 58.913 55.000 0.00 0.00 0.00 3.34
2297 3415 0.690762 AACTACACCCAGCCAATCGT 59.309 50.000 0.00 0.00 0.00 3.73
2298 3416 1.563924 ACTACACCCAGCCAATCGTA 58.436 50.000 0.00 0.00 0.00 3.43
2309 3430 0.810031 CCAATCGTAGCTCCCAACGG 60.810 60.000 6.90 0.00 39.52 4.44
2734 3855 1.284111 ATGGCCTGCCTGATCCTGAA 61.284 55.000 9.97 0.00 36.94 3.02
2736 3857 0.536915 GGCCTGCCTGATCCTGAATC 60.537 60.000 0.00 0.00 34.72 2.52
2737 3858 0.536915 GCCTGCCTGATCCTGAATCC 60.537 60.000 0.00 0.00 33.01 3.01
2738 3859 1.138568 CCTGCCTGATCCTGAATCCT 58.861 55.000 0.00 0.00 33.01 3.24
2739 3860 1.202782 CCTGCCTGATCCTGAATCCTG 60.203 57.143 0.00 0.00 33.01 3.86
2740 3861 1.767088 CTGCCTGATCCTGAATCCTGA 59.233 52.381 0.00 0.00 33.01 3.86
2741 3862 2.372504 CTGCCTGATCCTGAATCCTGAT 59.627 50.000 0.00 0.00 33.01 2.90
2742 3863 2.105993 TGCCTGATCCTGAATCCTGATG 59.894 50.000 0.00 0.00 33.01 3.07
2743 3864 2.371179 GCCTGATCCTGAATCCTGATGA 59.629 50.000 0.00 0.00 33.01 2.92
2744 3865 3.009253 GCCTGATCCTGAATCCTGATGAT 59.991 47.826 0.00 0.00 33.01 2.45
2745 3866 4.580868 CCTGATCCTGAATCCTGATGATG 58.419 47.826 0.00 0.00 32.68 3.07
2746 3867 4.565861 CCTGATCCTGAATCCTGATGATGG 60.566 50.000 0.00 0.00 32.68 3.51
2747 3868 3.329814 TGATCCTGAATCCTGATGATGGG 59.670 47.826 0.00 0.00 32.68 4.00
2748 3869 2.060275 TCCTGAATCCTGATGATGGGG 58.940 52.381 0.00 0.00 32.68 4.96
2749 3870 2.060275 CCTGAATCCTGATGATGGGGA 58.940 52.381 0.00 0.00 32.68 4.81
2750 3871 2.040012 CCTGAATCCTGATGATGGGGAG 59.960 54.545 0.00 0.00 32.68 4.30
2751 3872 2.977580 CTGAATCCTGATGATGGGGAGA 59.022 50.000 0.00 0.00 32.68 3.71
2752 3873 2.977580 TGAATCCTGATGATGGGGAGAG 59.022 50.000 0.00 0.00 32.68 3.20
2753 3874 1.360185 ATCCTGATGATGGGGAGAGC 58.640 55.000 0.00 0.00 32.28 4.09
2754 3875 0.267054 TCCTGATGATGGGGAGAGCT 59.733 55.000 0.00 0.00 0.00 4.09
2755 3876 1.505098 TCCTGATGATGGGGAGAGCTA 59.495 52.381 0.00 0.00 0.00 3.32
2767 3888 1.202359 GGAGAGCTAAGCGTTGGAGAG 60.202 57.143 0.00 0.00 0.00 3.20
2769 3890 2.683867 GAGAGCTAAGCGTTGGAGAGTA 59.316 50.000 0.00 0.00 0.00 2.59
2774 3895 4.461781 AGCTAAGCGTTGGAGAGTAAACTA 59.538 41.667 0.00 0.00 0.00 2.24
2777 3898 2.895404 AGCGTTGGAGAGTAAACTACCA 59.105 45.455 4.93 4.93 33.12 3.25
2779 3900 3.251571 CGTTGGAGAGTAAACTACCAGC 58.748 50.000 10.43 10.43 35.24 4.85
2781 3902 4.246458 GTTGGAGAGTAAACTACCAGCTG 58.754 47.826 6.78 6.78 35.24 4.24
2782 3903 3.774734 TGGAGAGTAAACTACCAGCTGA 58.225 45.455 17.39 0.00 31.94 4.26
2783 3904 4.353777 TGGAGAGTAAACTACCAGCTGAT 58.646 43.478 17.39 0.00 31.94 2.90
2784 3905 4.777896 TGGAGAGTAAACTACCAGCTGATT 59.222 41.667 17.39 3.91 31.94 2.57
2785 3906 5.955959 TGGAGAGTAAACTACCAGCTGATTA 59.044 40.000 17.39 5.02 31.94 1.75
2786 3907 6.611642 TGGAGAGTAAACTACCAGCTGATTAT 59.388 38.462 17.39 0.00 31.94 1.28
2787 3908 6.926272 GGAGAGTAAACTACCAGCTGATTATG 59.074 42.308 17.39 0.00 0.00 1.90
2793 3914 4.759782 ACTACCAGCTGATTATGTGTGTC 58.240 43.478 17.39 0.00 0.00 3.67
2801 3922 4.565962 GCTGATTATGTGTGTCTCTGTCTG 59.434 45.833 0.00 0.00 0.00 3.51
2802 3923 4.498241 TGATTATGTGTGTCTCTGTCTGC 58.502 43.478 0.00 0.00 0.00 4.26
2979 4102 1.001068 GGAGCTAGGCCGTATTCTTCC 59.999 57.143 0.00 0.00 0.00 3.46
3014 4137 6.827762 TGAAATTCAGCAAATTTTCTTTGGGT 59.172 30.769 10.14 0.00 45.47 4.51
3030 4153 1.139853 TGGGTGGGCAATTTGACAAAC 59.860 47.619 1.94 0.00 0.00 2.93
3040 4163 4.787591 GCAATTTGACAAACACAAAAGTGC 59.212 37.500 1.94 0.00 40.89 4.40
3041 4164 5.616424 GCAATTTGACAAACACAAAAGTGCA 60.616 36.000 12.75 0.00 43.52 4.57
3044 4167 3.433709 TGACAAACACAAAAGTGCATCG 58.566 40.909 0.00 0.00 0.00 3.84
3050 4173 5.689383 AACACAAAAGTGCATCGTAGAAT 57.311 34.783 0.00 0.00 43.58 2.40
3067 4190 4.523168 AGAATACGGACTTACTCCCTCT 57.477 45.455 0.00 0.00 35.21 3.69
3068 4191 4.208746 AGAATACGGACTTACTCCCTCTG 58.791 47.826 0.00 0.00 35.21 3.35
3093 4216 7.339721 TGTTCCAAAATAAGTGTTGTGGTCTTA 59.660 33.333 0.00 0.00 0.00 2.10
3117 4240 3.283751 TCAAATTTGAACCCACGACACT 58.716 40.909 18.45 0.00 33.55 3.55
3119 4242 4.513692 TCAAATTTGAACCCACGACACTAG 59.486 41.667 18.45 0.00 33.55 2.57
3123 4250 1.884579 TGAACCCACGACACTAGAGAC 59.115 52.381 0.00 0.00 0.00 3.36
3154 4281 4.935808 AGTATAAACAAAGAGCCTCCAACG 59.064 41.667 0.00 0.00 0.00 4.10
3159 4286 0.035458 AAAGAGCCTCCAACGGACAG 59.965 55.000 0.00 0.00 0.00 3.51
3239 4538 8.617290 ACTACTCATCAAGTTTAACGGATTTT 57.383 30.769 3.30 0.00 39.55 1.82
3240 4539 9.063615 ACTACTCATCAAGTTTAACGGATTTTT 57.936 29.630 3.30 0.00 39.55 1.94
3299 7334 9.416794 CAAGTTATTAGACGCATCATAGAAGAT 57.583 33.333 0.00 0.00 0.00 2.40
3310 7345 1.854743 CATAGAAGATGCCACGTGTCG 59.145 52.381 15.65 0.51 0.00 4.35
3311 7346 1.170442 TAGAAGATGCCACGTGTCGA 58.830 50.000 15.65 0.00 0.00 4.20
3325 7360 4.443063 CACGTGTCGACACAGATCTTAAAA 59.557 41.667 39.14 4.41 46.75 1.52
3331 7366 3.745975 CGACACAGATCTTAAAAGCACCA 59.254 43.478 0.00 0.00 0.00 4.17
3349 7384 1.502231 CACTGTCTTCTTCCACCACG 58.498 55.000 0.00 0.00 0.00 4.94
3355 7390 2.940410 GTCTTCTTCCACCACGAAACAA 59.060 45.455 0.00 0.00 0.00 2.83
3361 7396 4.158764 TCTTCCACCACGAAACAAAAATGT 59.841 37.500 0.00 0.00 0.00 2.71
3398 7433 2.031012 CACAGAGTTCAGCGGCCA 59.969 61.111 2.24 0.00 0.00 5.36
3407 7442 3.790437 CAGCGGCCAGGGTCATCT 61.790 66.667 2.24 0.00 0.00 2.90
3503 7538 1.682451 GGCCGGTGCAGACCTGTATA 61.682 60.000 1.90 0.00 40.58 1.47
3613 7657 4.830826 TGTGCTCTACATACACCGATAG 57.169 45.455 0.00 0.00 33.42 2.08
3689 7734 3.572255 GTCTCTTGTCATCCTAGCTAGGG 59.428 52.174 34.43 21.88 43.79 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.952030 TTGGTCATGTAGAAAATAAGTACATCA 57.048 29.630 0.00 0.00 35.63 3.07
12 13 9.912634 GAAAAGATGATTTTGGTCATGTAGAAA 57.087 29.630 0.00 0.00 38.88 2.52
13 14 9.300681 AGAAAAGATGATTTTGGTCATGTAGAA 57.699 29.630 0.00 0.00 38.88 2.10
14 15 8.868522 AGAAAAGATGATTTTGGTCATGTAGA 57.131 30.769 0.00 0.00 38.88 2.59
15 16 9.918630 AAAGAAAAGATGATTTTGGTCATGTAG 57.081 29.630 0.00 0.00 38.88 2.74
16 17 9.695526 CAAAGAAAAGATGATTTTGGTCATGTA 57.304 29.630 0.00 0.00 38.88 2.29
17 18 8.206189 ACAAAGAAAAGATGATTTTGGTCATGT 58.794 29.630 0.00 0.00 38.88 3.21
18 19 8.597662 ACAAAGAAAAGATGATTTTGGTCATG 57.402 30.769 0.00 0.00 38.88 3.07
19 20 9.617523 AAACAAAGAAAAGATGATTTTGGTCAT 57.382 25.926 0.00 0.00 41.36 3.06
20 21 8.881743 CAAACAAAGAAAAGATGATTTTGGTCA 58.118 29.630 0.00 0.00 34.07 4.02
21 22 9.097257 TCAAACAAAGAAAAGATGATTTTGGTC 57.903 29.630 0.00 0.00 34.07 4.02
22 23 9.101655 CTCAAACAAAGAAAAGATGATTTTGGT 57.898 29.630 0.00 0.00 34.07 3.67
23 24 8.553696 CCTCAAACAAAGAAAAGATGATTTTGG 58.446 33.333 0.00 0.00 34.07 3.28
24 25 9.101655 ACCTCAAACAAAGAAAAGATGATTTTG 57.898 29.630 0.00 0.00 35.47 2.44
25 26 9.671279 AACCTCAAACAAAGAAAAGATGATTTT 57.329 25.926 0.00 0.00 0.00 1.82
26 27 9.671279 AAACCTCAAACAAAGAAAAGATGATTT 57.329 25.926 0.00 0.00 0.00 2.17
27 28 9.317936 GAAACCTCAAACAAAGAAAAGATGATT 57.682 29.630 0.00 0.00 0.00 2.57
28 29 8.477256 TGAAACCTCAAACAAAGAAAAGATGAT 58.523 29.630 0.00 0.00 0.00 2.45
29 30 7.759433 GTGAAACCTCAAACAAAGAAAAGATGA 59.241 33.333 0.00 0.00 31.88 2.92
30 31 7.545265 TGTGAAACCTCAAACAAAGAAAAGATG 59.455 33.333 0.00 0.00 34.36 2.90
31 32 7.610865 TGTGAAACCTCAAACAAAGAAAAGAT 58.389 30.769 0.00 0.00 34.36 2.40
32 33 6.987386 TGTGAAACCTCAAACAAAGAAAAGA 58.013 32.000 0.00 0.00 34.36 2.52
33 34 7.832503 ATGTGAAACCTCAAACAAAGAAAAG 57.167 32.000 0.00 0.00 34.36 2.27
34 35 7.659390 ACAATGTGAAACCTCAAACAAAGAAAA 59.341 29.630 0.00 0.00 34.36 2.29
35 36 7.158021 ACAATGTGAAACCTCAAACAAAGAAA 58.842 30.769 0.00 0.00 34.36 2.52
36 37 6.696411 ACAATGTGAAACCTCAAACAAAGAA 58.304 32.000 0.00 0.00 34.36 2.52
37 38 6.279513 ACAATGTGAAACCTCAAACAAAGA 57.720 33.333 0.00 0.00 34.36 2.52
38 39 6.966435 AACAATGTGAAACCTCAAACAAAG 57.034 33.333 0.00 0.00 34.36 2.77
39 40 6.148480 CCAAACAATGTGAAACCTCAAACAAA 59.852 34.615 0.00 0.00 34.36 2.83
40 41 5.641209 CCAAACAATGTGAAACCTCAAACAA 59.359 36.000 0.00 0.00 34.36 2.83
41 42 5.174395 CCAAACAATGTGAAACCTCAAACA 58.826 37.500 0.00 0.00 34.36 2.83
42 43 5.063312 CACCAAACAATGTGAAACCTCAAAC 59.937 40.000 0.00 0.00 34.36 2.93
43 44 5.047021 TCACCAAACAATGTGAAACCTCAAA 60.047 36.000 0.00 0.00 38.48 2.69
44 45 4.464244 TCACCAAACAATGTGAAACCTCAA 59.536 37.500 0.00 0.00 38.48 3.02
45 46 4.019858 TCACCAAACAATGTGAAACCTCA 58.980 39.130 0.00 0.00 38.48 3.86
46 47 4.647424 TCACCAAACAATGTGAAACCTC 57.353 40.909 0.00 0.00 38.48 3.85
47 48 4.895297 AGATCACCAAACAATGTGAAACCT 59.105 37.500 0.00 0.00 44.04 3.50
48 49 5.200368 AGATCACCAAACAATGTGAAACC 57.800 39.130 0.00 0.00 44.04 3.27
49 50 7.538303 AAAAGATCACCAAACAATGTGAAAC 57.462 32.000 0.00 0.00 44.04 2.78
72 73 9.959749 ATCACTAAACTCTCGCAAAAATAAAAA 57.040 25.926 0.00 0.00 0.00 1.94
73 74 9.607285 GATCACTAAACTCTCGCAAAAATAAAA 57.393 29.630 0.00 0.00 0.00 1.52
74 75 8.779303 TGATCACTAAACTCTCGCAAAAATAAA 58.221 29.630 0.00 0.00 0.00 1.40
75 76 8.317891 TGATCACTAAACTCTCGCAAAAATAA 57.682 30.769 0.00 0.00 0.00 1.40
76 77 7.899178 TGATCACTAAACTCTCGCAAAAATA 57.101 32.000 0.00 0.00 0.00 1.40
77 78 6.801539 TGATCACTAAACTCTCGCAAAAAT 57.198 33.333 0.00 0.00 0.00 1.82
78 79 6.801539 ATGATCACTAAACTCTCGCAAAAA 57.198 33.333 0.00 0.00 0.00 1.94
79 80 6.801539 AATGATCACTAAACTCTCGCAAAA 57.198 33.333 0.00 0.00 0.00 2.44
80 81 6.801539 AAATGATCACTAAACTCTCGCAAA 57.198 33.333 0.00 0.00 0.00 3.68
81 82 6.801539 AAAATGATCACTAAACTCTCGCAA 57.198 33.333 0.00 0.00 0.00 4.85
82 83 7.899178 TTAAAATGATCACTAAACTCTCGCA 57.101 32.000 0.00 0.00 0.00 5.10
83 84 9.214953 CAATTAAAATGATCACTAAACTCTCGC 57.785 33.333 0.00 0.00 0.00 5.03
93 94 9.696917 GTTTCCTTCACAATTAAAATGATCACT 57.303 29.630 0.00 0.00 0.00 3.41
186 196 5.474876 CAGAATTGCCCTCTTTAAACTCTGT 59.525 40.000 0.00 0.00 0.00 3.41
210 220 2.157738 GACAATCTATCCCATGCAGCC 58.842 52.381 0.00 0.00 0.00 4.85
318 335 3.673543 AGTTGTCTCTACCCTCCCTAG 57.326 52.381 0.00 0.00 0.00 3.02
319 336 5.455872 CATAAGTTGTCTCTACCCTCCCTA 58.544 45.833 0.00 0.00 0.00 3.53
320 337 4.290942 CATAAGTTGTCTCTACCCTCCCT 58.709 47.826 0.00 0.00 0.00 4.20
321 338 3.388350 CCATAAGTTGTCTCTACCCTCCC 59.612 52.174 0.00 0.00 0.00 4.30
324 341 4.426704 ACACCATAAGTTGTCTCTACCCT 58.573 43.478 0.00 0.00 0.00 4.34
325 342 4.466726 AGACACCATAAGTTGTCTCTACCC 59.533 45.833 0.00 0.00 34.02 3.69
326 343 5.411781 CAGACACCATAAGTTGTCTCTACC 58.588 45.833 1.24 0.00 35.79 3.18
328 345 5.330233 TCCAGACACCATAAGTTGTCTCTA 58.670 41.667 1.24 0.00 35.79 2.43
329 346 4.160329 TCCAGACACCATAAGTTGTCTCT 58.840 43.478 1.24 0.00 35.79 3.10
330 347 4.537135 TCCAGACACCATAAGTTGTCTC 57.463 45.455 1.24 0.00 35.79 3.36
331 348 4.102524 TGTTCCAGACACCATAAGTTGTCT 59.897 41.667 0.00 0.00 37.34 3.41
332 349 4.385825 TGTTCCAGACACCATAAGTTGTC 58.614 43.478 0.00 0.00 32.00 3.18
333 350 4.389374 CTGTTCCAGACACCATAAGTTGT 58.611 43.478 0.00 0.00 33.82 3.32
334 351 3.753272 CCTGTTCCAGACACCATAAGTTG 59.247 47.826 0.00 0.00 33.82 3.16
335 352 3.244911 CCCTGTTCCAGACACCATAAGTT 60.245 47.826 0.00 0.00 33.82 2.66
336 353 2.305927 CCCTGTTCCAGACACCATAAGT 59.694 50.000 0.00 0.00 33.82 2.24
337 354 2.571653 TCCCTGTTCCAGACACCATAAG 59.428 50.000 0.00 0.00 33.82 1.73
338 355 2.626785 TCCCTGTTCCAGACACCATAA 58.373 47.619 0.00 0.00 33.82 1.90
340 357 1.352352 CTTCCCTGTTCCAGACACCAT 59.648 52.381 0.00 0.00 33.82 3.55
342 359 0.765510 ACTTCCCTGTTCCAGACACC 59.234 55.000 0.00 0.00 33.82 4.16
377 398 5.883673 GCACAAGGTTTACCATATACCAGAA 59.116 40.000 1.13 0.00 38.89 3.02
386 407 1.243902 CGTGGCACAAGGTTTACCAT 58.756 50.000 19.09 0.00 44.16 3.55
387 408 0.107116 ACGTGGCACAAGGTTTACCA 60.107 50.000 19.09 0.00 44.16 3.25
388 409 1.881591 TACGTGGCACAAGGTTTACC 58.118 50.000 19.09 0.00 44.16 2.85
389 410 4.632688 ACATATACGTGGCACAAGGTTTAC 59.367 41.667 19.09 0.00 44.16 2.01
405 511 4.083749 TGCACGTTCAAACCACACATATAC 60.084 41.667 0.00 0.00 0.00 1.47
409 515 1.098869 TGCACGTTCAAACCACACAT 58.901 45.000 0.00 0.00 0.00 3.21
412 518 2.724977 TTTTGCACGTTCAAACCACA 57.275 40.000 12.95 0.00 35.86 4.17
414 520 3.026630 TGTTTTTGCACGTTCAAACCA 57.973 38.095 12.95 9.93 35.86 3.67
438 564 1.000283 ACTTGACTCTGAGGTCGCTTG 60.000 52.381 9.85 0.00 38.91 4.01
439 565 1.333177 ACTTGACTCTGAGGTCGCTT 58.667 50.000 9.85 0.00 38.91 4.68
449 575 3.166679 GGGACCTGACTTACTTGACTCT 58.833 50.000 0.00 0.00 0.00 3.24
481 618 1.202830 TGTCTGCCGGTACAACCATTT 60.203 47.619 1.90 0.00 38.47 2.32
484 621 1.369692 CTGTCTGCCGGTACAACCA 59.630 57.895 1.90 0.00 38.47 3.67
485 622 1.375523 CCTGTCTGCCGGTACAACC 60.376 63.158 1.90 0.00 34.05 3.77
486 623 2.033194 GCCTGTCTGCCGGTACAAC 61.033 63.158 1.90 0.00 0.00 3.32
487 624 2.345991 GCCTGTCTGCCGGTACAA 59.654 61.111 1.90 0.00 0.00 2.41
490 627 3.755628 GACGCCTGTCTGCCGGTA 61.756 66.667 1.90 0.00 42.08 4.02
499 640 6.875076 ACTAGATTTATTGTAAGACGCCTGT 58.125 36.000 0.00 0.00 0.00 4.00
503 644 7.042725 TGCATGACTAGATTTATTGTAAGACGC 60.043 37.037 0.00 0.00 0.00 5.19
594 1061 6.814043 TCTCTTGGATGATGATGACTACAAG 58.186 40.000 0.00 0.00 36.37 3.16
595 1062 6.796785 TCTCTTGGATGATGATGACTACAA 57.203 37.500 0.00 0.00 0.00 2.41
596 1063 6.796785 TTCTCTTGGATGATGATGACTACA 57.203 37.500 0.00 0.00 0.00 2.74
597 1064 8.674263 AAATTCTCTTGGATGATGATGACTAC 57.326 34.615 0.00 0.00 0.00 2.73
599 1066 8.492782 ACTAAATTCTCTTGGATGATGATGACT 58.507 33.333 0.00 0.00 0.00 3.41
602 1069 8.447924 ACACTAAATTCTCTTGGATGATGATG 57.552 34.615 0.00 0.00 0.00 3.07
603 1070 7.440556 CGACACTAAATTCTCTTGGATGATGAT 59.559 37.037 0.00 0.00 0.00 2.45
607 1074 4.870426 GCGACACTAAATTCTCTTGGATGA 59.130 41.667 0.00 0.00 0.00 2.92
609 1076 4.192317 GGCGACACTAAATTCTCTTGGAT 58.808 43.478 0.00 0.00 0.00 3.41
613 1080 2.618053 CCGGCGACACTAAATTCTCTT 58.382 47.619 9.30 0.00 0.00 2.85
615 1082 0.651031 GCCGGCGACACTAAATTCTC 59.349 55.000 12.58 0.00 0.00 2.87
627 1094 1.871039 GCAATTAGATTAAGCCGGCGA 59.129 47.619 23.20 10.93 0.00 5.54
630 1097 4.984161 CCAAATGCAATTAGATTAAGCCGG 59.016 41.667 0.00 0.00 33.67 6.13
704 1177 1.373497 GTCAGTGACTCAGTGCCCG 60.373 63.158 16.26 0.00 35.04 6.13
733 1206 1.804326 CAGATTGGCGCTGCTTTGC 60.804 57.895 7.64 0.00 0.00 3.68
784 1289 1.671054 CGACGCAACAACCCCATCT 60.671 57.895 0.00 0.00 0.00 2.90
819 1324 2.102420 TCATGTGATACGTGATGGTCCC 59.898 50.000 0.00 0.00 39.05 4.46
826 1331 2.094234 CCAGTGGTCATGTGATACGTGA 60.094 50.000 0.00 0.00 41.45 4.35
832 1337 2.205022 CCAACCAGTGGTCATGTGAT 57.795 50.000 17.06 0.00 43.20 3.06
833 1338 3.723772 CCAACCAGTGGTCATGTGA 57.276 52.632 17.06 0.00 43.20 3.58
842 1347 3.663176 CGCAGCCACCAACCAGTG 61.663 66.667 0.00 0.00 37.51 3.66
861 1366 4.746951 TCACGTACGTCAGCCGCG 62.747 66.667 19.94 5.57 41.42 6.46
862 1367 3.170585 GTCACGTACGTCAGCCGC 61.171 66.667 19.94 1.45 41.42 6.53
863 1368 2.868331 CGTCACGTACGTCAGCCG 60.868 66.667 19.94 13.81 46.72 5.52
887 1392 1.010935 CATATACGCTCGCTGCAGGG 61.011 60.000 23.98 23.98 43.06 4.45
890 1395 0.660300 CGTCATATACGCTCGCTGCA 60.660 55.000 0.00 0.00 46.10 4.41
891 1396 2.054801 CGTCATATACGCTCGCTGC 58.945 57.895 0.00 0.00 46.10 5.25
900 1405 1.299620 ACGCACGGCCGTCATATAC 60.300 57.895 31.80 12.62 36.61 1.47
919 1424 1.676678 TAGATCAGCGAGCCACACCC 61.677 60.000 0.00 0.00 0.00 4.61
932 1437 3.134623 CCCACCTGTATGCTGTTAGATCA 59.865 47.826 0.00 0.00 0.00 2.92
933 1438 3.495100 CCCCACCTGTATGCTGTTAGATC 60.495 52.174 0.00 0.00 0.00 2.75
934 1439 2.439507 CCCCACCTGTATGCTGTTAGAT 59.560 50.000 0.00 0.00 0.00 1.98
945 1465 2.933287 CCACCTGCCCCACCTGTA 60.933 66.667 0.00 0.00 0.00 2.74
954 1474 4.101448 ATCGTCCAGCCACCTGCC 62.101 66.667 0.00 0.00 42.71 4.85
955 1475 2.512515 GATCGTCCAGCCACCTGC 60.513 66.667 0.00 0.00 37.77 4.85
956 1476 2.202797 CGATCGTCCAGCCACCTG 60.203 66.667 7.03 0.00 38.85 4.00
959 1491 2.583593 GCTCGATCGTCCAGCCAC 60.584 66.667 15.94 0.00 0.00 5.01
986 1532 0.533755 CCCCATTGGTCGATCAGCTC 60.534 60.000 0.00 0.00 0.00 4.09
999 1553 2.515901 GCTATCGCCCACCCCATT 59.484 61.111 0.00 0.00 0.00 3.16
1180 1755 4.566426 AGAAGATGGAGAAGGGAAAGTG 57.434 45.455 0.00 0.00 0.00 3.16
1181 1756 4.849235 AGAAGAAGATGGAGAAGGGAAAGT 59.151 41.667 0.00 0.00 0.00 2.66
1187 1762 4.161189 TGTGCTAGAAGAAGATGGAGAAGG 59.839 45.833 0.00 0.00 0.00 3.46
1188 1763 5.336150 TGTGCTAGAAGAAGATGGAGAAG 57.664 43.478 0.00 0.00 0.00 2.85
1190 1765 5.207354 AGATGTGCTAGAAGAAGATGGAGA 58.793 41.667 0.00 0.00 0.00 3.71
1191 1766 5.534207 AGATGTGCTAGAAGAAGATGGAG 57.466 43.478 0.00 0.00 0.00 3.86
1193 1768 5.754406 CAGAAGATGTGCTAGAAGAAGATGG 59.246 44.000 0.00 0.00 0.00 3.51
1195 1770 5.424895 ACCAGAAGATGTGCTAGAAGAAGAT 59.575 40.000 0.00 0.00 0.00 2.40
1197 1772 4.869297 CACCAGAAGATGTGCTAGAAGAAG 59.131 45.833 0.00 0.00 0.00 2.85
1198 1773 4.825422 CACCAGAAGATGTGCTAGAAGAA 58.175 43.478 0.00 0.00 0.00 2.52
1207 1782 0.388520 TCGACGCACCAGAAGATGTG 60.389 55.000 0.00 0.00 35.58 3.21
1208 1783 0.388649 GTCGACGCACCAGAAGATGT 60.389 55.000 0.00 0.00 0.00 3.06
1209 1784 1.406219 CGTCGACGCACCAGAAGATG 61.406 60.000 26.59 0.00 0.00 2.90
1210 1785 1.154016 CGTCGACGCACCAGAAGAT 60.154 57.895 26.59 0.00 0.00 2.40
1211 1786 2.254350 CGTCGACGCACCAGAAGA 59.746 61.111 26.59 0.00 0.00 2.87
1223 1798 3.657157 TCGATCAAGCACTTGCGTCGA 62.657 52.381 24.00 24.00 45.50 4.20
1228 1803 1.466167 ACACATCGATCAAGCACTTGC 59.534 47.619 5.49 0.00 40.24 4.01
1229 1804 3.485633 CAACACATCGATCAAGCACTTG 58.514 45.455 3.94 3.94 41.71 3.16
1230 1805 2.485426 CCAACACATCGATCAAGCACTT 59.515 45.455 0.00 0.00 0.00 3.16
1231 1806 2.079158 CCAACACATCGATCAAGCACT 58.921 47.619 0.00 0.00 0.00 4.40
1232 1807 1.131126 CCCAACACATCGATCAAGCAC 59.869 52.381 0.00 0.00 0.00 4.40
1233 1808 1.452110 CCCAACACATCGATCAAGCA 58.548 50.000 0.00 0.00 0.00 3.91
1234 1809 0.099436 GCCCAACACATCGATCAAGC 59.901 55.000 0.00 0.00 0.00 4.01
1235 1810 0.734889 GGCCCAACACATCGATCAAG 59.265 55.000 0.00 0.00 0.00 3.02
1236 1811 0.037447 TGGCCCAACACATCGATCAA 59.963 50.000 0.00 0.00 0.00 2.57
1237 1812 0.676466 GTGGCCCAACACATCGATCA 60.676 55.000 0.00 0.00 40.99 2.92
1238 1813 1.705337 CGTGGCCCAACACATCGATC 61.705 60.000 0.00 0.00 41.38 3.69
1239 1814 1.745115 CGTGGCCCAACACATCGAT 60.745 57.895 0.00 0.00 41.38 3.59
1240 1815 2.358125 CGTGGCCCAACACATCGA 60.358 61.111 0.00 0.00 41.38 3.59
1241 1816 4.101790 GCGTGGCCCAACACATCG 62.102 66.667 0.00 0.00 41.38 3.84
1242 1817 4.101790 CGCGTGGCCCAACACATC 62.102 66.667 0.00 0.00 41.38 3.06
1243 1818 3.538785 TACGCGTGGCCCAACACAT 62.539 57.895 24.59 0.00 41.38 3.21
1244 1819 4.237207 TACGCGTGGCCCAACACA 62.237 61.111 24.59 0.00 41.38 3.72
1245 1820 3.719144 GTACGCGTGGCCCAACAC 61.719 66.667 24.59 5.23 37.99 3.32
1421 2000 2.202932 CGAGCGAGATGGGGTTGG 60.203 66.667 0.00 0.00 0.00 3.77
1515 2094 6.466885 TCAAGGTAGGATTTGTAGTAGAGC 57.533 41.667 0.00 0.00 0.00 4.09
1518 2124 9.152595 GAAAGTTCAAGGTAGGATTTGTAGTAG 57.847 37.037 0.00 0.00 0.00 2.57
1519 2125 8.653191 TGAAAGTTCAAGGTAGGATTTGTAGTA 58.347 33.333 0.00 0.00 33.55 1.82
1521 2127 7.979444 TGAAAGTTCAAGGTAGGATTTGTAG 57.021 36.000 0.00 0.00 33.55 2.74
1542 2148 9.485206 GACTACCATTACTAGTTCAAACTTGAA 57.515 33.333 0.00 0.69 44.31 2.69
1543 2149 7.811236 CGACTACCATTACTAGTTCAAACTTGA 59.189 37.037 0.00 0.00 40.37 3.02
1547 2153 9.578439 AATACGACTACCATTACTAGTTCAAAC 57.422 33.333 0.00 0.00 0.00 2.93
1549 2155 9.793252 GAAATACGACTACCATTACTAGTTCAA 57.207 33.333 0.00 0.00 0.00 2.69
1551 2157 9.962783 ATGAAATACGACTACCATTACTAGTTC 57.037 33.333 0.00 0.00 0.00 3.01
1560 2166 9.832445 AGTTTGATTATGAAATACGACTACCAT 57.168 29.630 0.00 0.00 0.00 3.55
1561 2167 9.093970 CAGTTTGATTATGAAATACGACTACCA 57.906 33.333 0.00 0.00 0.00 3.25
1562 2168 8.548721 CCAGTTTGATTATGAAATACGACTACC 58.451 37.037 0.00 0.00 0.00 3.18
1563 2169 9.095065 ACCAGTTTGATTATGAAATACGACTAC 57.905 33.333 0.00 0.00 0.00 2.73
1564 2170 9.661563 AACCAGTTTGATTATGAAATACGACTA 57.338 29.630 0.00 0.00 0.00 2.59
1565 2171 8.450964 CAACCAGTTTGATTATGAAATACGACT 58.549 33.333 0.00 0.00 37.39 4.18
1566 2172 8.234546 ACAACCAGTTTGATTATGAAATACGAC 58.765 33.333 0.00 0.00 38.73 4.34
1567 2173 8.330466 ACAACCAGTTTGATTATGAAATACGA 57.670 30.769 0.00 0.00 38.73 3.43
1568 2174 7.696453 GGACAACCAGTTTGATTATGAAATACG 59.304 37.037 0.00 0.00 38.73 3.06
1569 2175 8.519526 TGGACAACCAGTTTGATTATGAAATAC 58.480 33.333 0.00 0.00 41.77 1.89
1570 2176 8.642935 TGGACAACCAGTTTGATTATGAAATA 57.357 30.769 0.00 0.00 41.77 1.40
1601 2208 7.092137 TCAGATGAAGTATGGCAAATTCTTG 57.908 36.000 0.00 0.00 35.49 3.02
1611 2218 9.334947 ACACAAGATAATTCAGATGAAGTATGG 57.665 33.333 17.45 10.55 42.93 2.74
1644 2251 1.135046 CAGAGAACAGAGCACACACG 58.865 55.000 0.00 0.00 0.00 4.49
1645 2252 2.131183 GTCAGAGAACAGAGCACACAC 58.869 52.381 0.00 0.00 0.00 3.82
1654 2261 1.270518 CCACACCCTGTCAGAGAACAG 60.271 57.143 0.00 0.00 45.10 3.16
1657 2264 1.133167 TCTCCACACCCTGTCAGAGAA 60.133 52.381 0.00 0.00 35.24 2.87
1658 2265 0.482887 TCTCCACACCCTGTCAGAGA 59.517 55.000 0.00 0.00 35.58 3.10
1659 2266 1.566211 ATCTCCACACCCTGTCAGAG 58.434 55.000 0.00 0.00 32.09 3.35
1661 2268 2.169352 CCTAATCTCCACACCCTGTCAG 59.831 54.545 0.00 0.00 0.00 3.51
1663 2270 1.486726 CCCTAATCTCCACACCCTGTC 59.513 57.143 0.00 0.00 0.00 3.51
1871 2774 2.796483 TATGTGCCAGGTCACGTGCC 62.796 60.000 11.67 15.47 39.73 5.01
1887 2797 5.510349 CCGACATCTATGGGCCTGATATATG 60.510 48.000 4.53 10.27 0.00 1.78
1991 2906 3.172824 GCAGAACGAACAGAGTAGTAGC 58.827 50.000 0.00 0.00 0.00 3.58
2000 2921 5.173854 GGATTTCTTTTTGCAGAACGAACAG 59.826 40.000 8.21 0.00 32.28 3.16
2002 2930 5.040635 TGGATTTCTTTTTGCAGAACGAAC 58.959 37.500 8.21 0.00 32.28 3.95
2012 2940 8.812329 TGTTTTCAACGTATGGATTTCTTTTTG 58.188 29.630 0.00 0.00 0.00 2.44
2086 3015 3.327626 TGTGCAATGCAACAATGAATCC 58.672 40.909 10.44 0.00 41.47 3.01
2153 3090 9.416794 CACATGATAATTCAGAGGTAGTATGAC 57.583 37.037 0.00 0.00 34.73 3.06
2159 3096 8.393366 CAAACACACATGATAATTCAGAGGTAG 58.607 37.037 0.00 0.00 34.73 3.18
2162 3099 7.149569 ACAAACACACATGATAATTCAGAGG 57.850 36.000 0.00 0.00 34.73 3.69
2163 3100 8.291740 TGAACAAACACACATGATAATTCAGAG 58.708 33.333 0.00 0.00 34.73 3.35
2166 3103 6.862608 GCTGAACAAACACACATGATAATTCA 59.137 34.615 0.00 0.00 36.00 2.57
2194 3308 8.031864 ACTGACTGACTGAACTAGTTAATGATG 58.968 37.037 8.42 1.22 40.53 3.07
2245 3363 1.658095 GTCGATCTGAGAAGCAAGCAC 59.342 52.381 0.00 0.00 0.00 4.40
2289 3407 1.429148 CGTTGGGAGCTACGATTGGC 61.429 60.000 0.33 0.00 40.03 4.52
2296 3414 2.508663 GTCGCCGTTGGGAGCTAC 60.509 66.667 0.00 0.00 33.60 3.58
2297 3415 4.124351 CGTCGCCGTTGGGAGCTA 62.124 66.667 0.00 0.00 33.60 3.32
2694 3815 4.329545 GCAACCTCGGAGTGCCCA 62.330 66.667 8.91 0.00 34.14 5.36
2697 3818 0.179045 ATATGGCAACCTCGGAGTGC 60.179 55.000 11.09 11.09 0.00 4.40
2698 3819 1.586422 CATATGGCAACCTCGGAGTG 58.414 55.000 4.02 0.00 0.00 3.51
2724 3845 4.565861 CCCATCATCAGGATTCAGGATCAG 60.566 50.000 0.00 0.00 36.43 2.90
2734 3855 1.132462 AGCTCTCCCCATCATCAGGAT 60.132 52.381 0.00 0.00 36.39 3.24
2736 3857 2.021262 TAGCTCTCCCCATCATCAGG 57.979 55.000 0.00 0.00 0.00 3.86
2737 3858 2.289569 GCTTAGCTCTCCCCATCATCAG 60.290 54.545 0.00 0.00 0.00 2.90
2738 3859 1.696336 GCTTAGCTCTCCCCATCATCA 59.304 52.381 0.00 0.00 0.00 3.07
2739 3860 1.337635 CGCTTAGCTCTCCCCATCATC 60.338 57.143 1.76 0.00 0.00 2.92
2740 3861 0.683973 CGCTTAGCTCTCCCCATCAT 59.316 55.000 1.76 0.00 0.00 2.45
2741 3862 0.687757 ACGCTTAGCTCTCCCCATCA 60.688 55.000 1.76 0.00 0.00 3.07
2742 3863 0.466124 AACGCTTAGCTCTCCCCATC 59.534 55.000 1.76 0.00 0.00 3.51
2743 3864 0.179000 CAACGCTTAGCTCTCCCCAT 59.821 55.000 1.76 0.00 0.00 4.00
2744 3865 1.596934 CAACGCTTAGCTCTCCCCA 59.403 57.895 1.76 0.00 0.00 4.96
2745 3866 1.153349 CCAACGCTTAGCTCTCCCC 60.153 63.158 1.76 0.00 0.00 4.81
2746 3867 0.179097 CTCCAACGCTTAGCTCTCCC 60.179 60.000 1.76 0.00 0.00 4.30
2747 3868 0.818296 TCTCCAACGCTTAGCTCTCC 59.182 55.000 1.76 0.00 0.00 3.71
2748 3869 1.474879 ACTCTCCAACGCTTAGCTCTC 59.525 52.381 1.76 0.00 0.00 3.20
2749 3870 1.551452 ACTCTCCAACGCTTAGCTCT 58.449 50.000 1.76 0.00 0.00 4.09
2750 3871 3.505464 TTACTCTCCAACGCTTAGCTC 57.495 47.619 1.76 0.00 0.00 4.09
2751 3872 3.258622 AGTTTACTCTCCAACGCTTAGCT 59.741 43.478 1.76 0.00 0.00 3.32
2752 3873 3.586892 AGTTTACTCTCCAACGCTTAGC 58.413 45.455 0.00 0.00 0.00 3.09
2753 3874 5.100943 GGTAGTTTACTCTCCAACGCTTAG 58.899 45.833 0.00 0.00 0.00 2.18
2754 3875 4.523943 TGGTAGTTTACTCTCCAACGCTTA 59.476 41.667 4.86 0.00 30.91 3.09
2755 3876 3.322828 TGGTAGTTTACTCTCCAACGCTT 59.677 43.478 4.86 0.00 30.91 4.68
2767 3888 6.594159 ACACACATAATCAGCTGGTAGTTTAC 59.406 38.462 15.13 0.00 0.00 2.01
2769 3890 5.560724 ACACACATAATCAGCTGGTAGTTT 58.439 37.500 15.13 3.23 0.00 2.66
2774 3895 3.517100 AGAGACACACATAATCAGCTGGT 59.483 43.478 15.13 2.68 0.00 4.00
2777 3898 4.465660 AGACAGAGACACACATAATCAGCT 59.534 41.667 0.00 0.00 0.00 4.24
2779 3900 4.565962 GCAGACAGAGACACACATAATCAG 59.434 45.833 0.00 0.00 0.00 2.90
2781 3902 4.753233 AGCAGACAGAGACACACATAATC 58.247 43.478 0.00 0.00 0.00 1.75
2782 3903 4.815533 AGCAGACAGAGACACACATAAT 57.184 40.909 0.00 0.00 0.00 1.28
2783 3904 4.607293 AAGCAGACAGAGACACACATAA 57.393 40.909 0.00 0.00 0.00 1.90
2784 3905 4.281941 AGAAAGCAGACAGAGACACACATA 59.718 41.667 0.00 0.00 0.00 2.29
2785 3906 3.070734 AGAAAGCAGACAGAGACACACAT 59.929 43.478 0.00 0.00 0.00 3.21
2786 3907 2.432146 AGAAAGCAGACAGAGACACACA 59.568 45.455 0.00 0.00 0.00 3.72
2787 3908 3.056304 GAGAAAGCAGACAGAGACACAC 58.944 50.000 0.00 0.00 0.00 3.82
2793 3914 4.458989 AGACACTAGAGAAAGCAGACAGAG 59.541 45.833 0.00 0.00 0.00 3.35
2801 3922 1.999024 GCAGCAGACACTAGAGAAAGC 59.001 52.381 0.00 0.00 0.00 3.51
2802 3923 3.252400 CTGCAGCAGACACTAGAGAAAG 58.748 50.000 18.42 0.00 32.44 2.62
2854 3975 0.729690 GATGGAGTTCTTTGCCTCGC 59.270 55.000 0.00 0.00 0.00 5.03
2891 4012 9.520204 CCAAATTAGCTAAATCCTTACAACATG 57.480 33.333 10.85 0.00 0.00 3.21
2953 4076 3.148279 CGGCCTAGCTCCGGTTCT 61.148 66.667 0.00 2.02 42.99 3.01
2979 4102 8.844441 AATTTGCTGAATTTCATGTTTTTGTG 57.156 26.923 0.00 0.00 34.27 3.33
3014 4137 3.616956 TTGTGTTTGTCAAATTGCCCA 57.383 38.095 0.40 0.00 0.00 5.36
3050 4173 7.746566 TTGGAACAGAGGGAGTAAGTCCGTA 62.747 48.000 0.00 0.00 44.02 4.02
3067 4190 5.654650 AGACCACAACACTTATTTTGGAACA 59.345 36.000 0.00 0.00 0.00 3.18
3068 4191 6.144078 AGACCACAACACTTATTTTGGAAC 57.856 37.500 0.00 0.00 0.00 3.62
3108 4231 0.675837 TCCGGTCTCTAGTGTCGTGG 60.676 60.000 0.00 0.00 0.00 4.94
3109 4232 0.727970 CTCCGGTCTCTAGTGTCGTG 59.272 60.000 0.00 0.00 0.00 4.35
3111 4234 1.096386 CCCTCCGGTCTCTAGTGTCG 61.096 65.000 0.00 0.00 0.00 4.35
3112 4235 0.255318 TCCCTCCGGTCTCTAGTGTC 59.745 60.000 0.00 0.00 0.00 3.67
3113 4236 0.256464 CTCCCTCCGGTCTCTAGTGT 59.744 60.000 0.00 0.00 0.00 3.55
3117 4240 4.166725 TGTTTATACTCCCTCCGGTCTCTA 59.833 45.833 0.00 0.00 0.00 2.43
3119 4242 3.294214 TGTTTATACTCCCTCCGGTCTC 58.706 50.000 0.00 0.00 0.00 3.36
3123 4250 4.694339 CTCTTTGTTTATACTCCCTCCGG 58.306 47.826 0.00 0.00 0.00 5.14
3132 4259 4.094442 CCGTTGGAGGCTCTTTGTTTATAC 59.906 45.833 15.23 0.00 0.00 1.47
3154 4281 5.712152 AGAATTTGATGGTTTGTCTGTCC 57.288 39.130 0.00 0.00 0.00 4.02
3159 4286 6.089249 ACAGGAAGAATTTGATGGTTTGTC 57.911 37.500 0.00 0.00 0.00 3.18
3241 4540 1.585592 AGATCAGGTATTCCAGGGGGA 59.414 52.381 0.00 0.00 43.03 4.81
3310 7345 4.757149 AGTGGTGCTTTTAAGATCTGTGTC 59.243 41.667 0.00 0.00 0.00 3.67
3311 7346 4.516698 CAGTGGTGCTTTTAAGATCTGTGT 59.483 41.667 0.00 0.00 0.00 3.72
3325 7360 1.131638 TGGAAGAAGACAGTGGTGCT 58.868 50.000 0.00 0.00 0.00 4.40
3331 7366 1.410004 TCGTGGTGGAAGAAGACAGT 58.590 50.000 0.00 0.00 0.00 3.55
3349 7384 7.855409 GGCTACATGGAAAAACATTTTTGTTTC 59.145 33.333 7.05 0.00 40.67 2.78
3355 7390 5.923204 TGTGGCTACATGGAAAAACATTTT 58.077 33.333 0.00 0.00 0.00 1.82
3361 7396 1.892474 GGCTGTGGCTACATGGAAAAA 59.108 47.619 2.33 0.00 35.97 1.94
3398 7433 0.608640 GTGTGGACGAAGATGACCCT 59.391 55.000 0.00 0.00 0.00 4.34
3407 7442 0.104120 CAGTGTGGAGTGTGGACGAA 59.896 55.000 0.00 0.00 0.00 3.85
3488 7523 5.269991 TCCCTATATATACAGGTCTGCACC 58.730 45.833 6.32 0.00 44.19 5.01
3489 7524 5.361285 CCTCCCTATATATACAGGTCTGCAC 59.639 48.000 6.32 0.00 0.00 4.57
3503 7538 0.719623 GCCCTCCTCCCTCCCTATAT 59.280 60.000 0.00 0.00 0.00 0.86
3613 7657 6.015504 CACACAAAAATCTAGTGCGTGTATC 58.984 40.000 0.00 0.00 36.76 2.24
3689 7734 3.027170 CTTGGCCGTGACGATGCAC 62.027 63.158 6.54 0.00 35.46 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.