Multiple sequence alignment - TraesCS3D01G066400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G066400 chr3D 100.000 2398 0 0 1 2398 29607002 29609399 0.000000e+00 4429.0
1 TraesCS3D01G066400 chr3D 85.684 936 103 24 864 1787 30374834 30373918 0.000000e+00 957.0
2 TraesCS3D01G066400 chr3D 84.615 728 78 16 1076 1787 29410466 29411175 0.000000e+00 693.0
3 TraesCS3D01G066400 chr3D 87.903 248 21 5 803 1042 29410220 29410466 1.400000e-72 283.0
4 TraesCS3D01G066400 chr3D 79.101 378 37 17 367 725 29614802 29615156 3.100000e-54 222.0
5 TraesCS3D01G066400 chr3D 91.837 147 9 2 9 155 525755766 525755909 4.040000e-48 202.0
6 TraesCS3D01G066400 chr3D 95.122 41 1 1 534 574 29382234 29382273 1.990000e-06 63.9
7 TraesCS3D01G066400 chr3B 91.284 1067 49 13 372 1428 50397437 50398469 0.000000e+00 1415.0
8 TraesCS3D01G066400 chr3B 84.109 988 111 25 672 1636 53199941 53198977 0.000000e+00 913.0
9 TraesCS3D01G066400 chr3B 89.058 722 56 11 1435 2151 50407023 50407726 0.000000e+00 874.0
10 TraesCS3D01G066400 chr3B 80.664 1024 133 35 724 1722 50413569 50414552 0.000000e+00 734.0
11 TraesCS3D01G066400 chr3B 84.066 728 83 16 1076 1787 50240066 50240776 0.000000e+00 671.0
12 TraesCS3D01G066400 chr3B 91.117 394 21 8 1 382 50261507 50261898 2.730000e-144 521.0
13 TraesCS3D01G066400 chr3B 85.772 246 24 6 803 1040 50239823 50240065 1.420000e-62 250.0
14 TraesCS3D01G066400 chr3B 77.480 373 53 15 1024 1391 50528494 50528840 6.760000e-46 195.0
15 TraesCS3D01G066400 chr3B 92.453 106 7 1 1683 1787 53198983 53198878 1.480000e-32 150.0
16 TraesCS3D01G066400 chr3B 90.000 50 3 2 2351 2398 50407714 50407763 1.990000e-06 63.9
17 TraesCS3D01G066400 chr3B 100.000 29 0 0 367 395 50423657 50423685 1.000000e-03 54.7
18 TraesCS3D01G066400 chr3A 92.382 827 60 3 995 1820 40173107 40173931 0.000000e+00 1175.0
19 TraesCS3D01G066400 chr3A 85.233 1009 102 29 807 1787 42320471 42319482 0.000000e+00 994.0
20 TraesCS3D01G066400 chr3A 79.887 1064 136 40 749 1784 40185417 40186430 0.000000e+00 708.0
21 TraesCS3D01G066400 chr3A 86.441 649 73 8 1149 1786 42389967 42389323 0.000000e+00 697.0
22 TraesCS3D01G066400 chr4D 95.322 171 7 1 2147 2317 7834912 7835081 1.090000e-68 270.0
23 TraesCS3D01G066400 chr7D 94.675 169 9 0 2149 2317 570823785 570823953 1.830000e-66 263.0
24 TraesCS3D01G066400 chr7D 90.066 151 13 2 7 157 47448013 47447865 6.760000e-46 195.0
25 TraesCS3D01G066400 chr6D 95.181 166 8 0 2153 2318 461504631 461504796 1.830000e-66 263.0
26 TraesCS3D01G066400 chr6D 94.186 172 8 2 2153 2324 161722634 161722465 6.580000e-66 261.0
27 TraesCS3D01G066400 chr6D 93.182 176 12 0 2148 2323 243033059 243032884 2.360000e-65 259.0
28 TraesCS3D01G066400 chr6D 93.605 172 11 0 2146 2317 293177233 293177404 8.510000e-65 257.0
29 TraesCS3D01G066400 chr6D 91.034 145 12 1 13 157 12329277 12329420 6.760000e-46 195.0
30 TraesCS3D01G066400 chr6A 93.605 172 11 0 2146 2317 7099800 7099971 8.510000e-65 257.0
31 TraesCS3D01G066400 chr5D 91.444 187 14 1 2134 2318 514861523 514861337 3.060000e-64 255.0
32 TraesCS3D01G066400 chr4A 93.103 174 12 0 2151 2324 30396705 30396532 3.060000e-64 255.0
33 TraesCS3D01G066400 chr4A 93.793 145 9 0 12 156 584075368 584075512 4.010000e-53 219.0
34 TraesCS3D01G066400 chr2D 94.286 140 8 0 17 156 638240834 638240695 5.190000e-52 215.0
35 TraesCS3D01G066400 chr1D 91.781 146 11 1 12 157 30226633 30226489 4.040000e-48 202.0
36 TraesCS3D01G066400 chr4B 91.667 144 12 0 14 157 130618630 130618773 1.450000e-47 200.0
37 TraesCS3D01G066400 chr2B 91.096 146 13 0 12 157 236050733 236050878 5.230000e-47 198.0
38 TraesCS3D01G066400 chr7B 97.297 37 1 0 1881 1917 712784444 712784480 1.990000e-06 63.9
39 TraesCS3D01G066400 chr1A 90.698 43 4 0 1875 1917 584976714 584976672 9.260000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G066400 chr3D 29607002 29609399 2397 False 4429.00 4429 100.000 1 2398 1 chr3D.!!$F2 2397
1 TraesCS3D01G066400 chr3D 30373918 30374834 916 True 957.00 957 85.684 864 1787 1 chr3D.!!$R1 923
2 TraesCS3D01G066400 chr3D 29410220 29411175 955 False 488.00 693 86.259 803 1787 2 chr3D.!!$F5 984
3 TraesCS3D01G066400 chr3B 50397437 50398469 1032 False 1415.00 1415 91.284 372 1428 1 chr3B.!!$F2 1056
4 TraesCS3D01G066400 chr3B 50413569 50414552 983 False 734.00 734 80.664 724 1722 1 chr3B.!!$F3 998
5 TraesCS3D01G066400 chr3B 53198878 53199941 1063 True 531.50 913 88.281 672 1787 2 chr3B.!!$R1 1115
6 TraesCS3D01G066400 chr3B 50407023 50407763 740 False 468.95 874 89.529 1435 2398 2 chr3B.!!$F7 963
7 TraesCS3D01G066400 chr3B 50239823 50240776 953 False 460.50 671 84.919 803 1787 2 chr3B.!!$F6 984
8 TraesCS3D01G066400 chr3A 40173107 40173931 824 False 1175.00 1175 92.382 995 1820 1 chr3A.!!$F1 825
9 TraesCS3D01G066400 chr3A 42319482 42320471 989 True 994.00 994 85.233 807 1787 1 chr3A.!!$R1 980
10 TraesCS3D01G066400 chr3A 40185417 40186430 1013 False 708.00 708 79.887 749 1784 1 chr3A.!!$F2 1035
11 TraesCS3D01G066400 chr3A 42389323 42389967 644 True 697.00 697 86.441 1149 1786 1 chr3A.!!$R2 637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
170 171 0.095245 CGCTGTTATGCCACTTGTCG 59.905 55.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2092 2181 2.118679 GCTGGAAAATGGGGCCTATTT 58.881 47.619 20.85 20.85 0.0 1.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.425915 GTGCGTATATGTTTTATTTTTGCGA 57.574 32.000 0.00 0.00 0.00 5.10
25 26 7.876596 GTGCGTATATGTTTTATTTTTGCGAA 58.123 30.769 0.00 0.00 0.00 4.70
26 27 8.366666 GTGCGTATATGTTTTATTTTTGCGAAA 58.633 29.630 0.00 0.00 0.00 3.46
27 28 8.912658 TGCGTATATGTTTTATTTTTGCGAAAA 58.087 25.926 14.16 14.16 38.96 2.29
28 29 9.391794 GCGTATATGTTTTATTTTTGCGAAAAG 57.608 29.630 16.68 0.88 38.09 2.27
29 30 9.879973 CGTATATGTTTTATTTTTGCGAAAAGG 57.120 29.630 16.68 0.00 38.09 3.11
33 34 8.600449 ATGTTTTATTTTTGCGAAAAGGATCA 57.400 26.923 16.68 11.77 38.09 2.92
34 35 8.425577 TGTTTTATTTTTGCGAAAAGGATCAA 57.574 26.923 16.68 3.69 38.09 2.57
35 36 8.883731 TGTTTTATTTTTGCGAAAAGGATCAAA 58.116 25.926 16.68 8.93 38.09 2.69
36 37 9.877137 GTTTTATTTTTGCGAAAAGGATCAAAT 57.123 25.926 16.68 1.13 38.09 2.32
38 39 9.487790 TTTATTTTTGCGAAAAGGATCAAATCT 57.512 25.926 16.68 0.00 38.09 2.40
41 42 9.657419 ATTTTTGCGAAAAGGATCAAATCTATT 57.343 25.926 16.68 0.00 38.09 1.73
63 64 9.976511 CTATTATAAAGATTCACCGGAAGTACA 57.023 33.333 9.46 0.00 36.25 2.90
65 66 9.675464 ATTATAAAGATTCACCGGAAGTACAAA 57.325 29.630 9.46 0.00 36.25 2.83
66 67 7.989416 ATAAAGATTCACCGGAAGTACAAAA 57.011 32.000 9.46 0.00 36.25 2.44
67 68 5.684550 AAGATTCACCGGAAGTACAAAAC 57.315 39.130 9.46 0.00 36.25 2.43
68 69 4.710324 AGATTCACCGGAAGTACAAAACA 58.290 39.130 9.46 0.00 36.25 2.83
69 70 4.514066 AGATTCACCGGAAGTACAAAACAC 59.486 41.667 9.46 0.00 36.25 3.32
70 71 2.563702 TCACCGGAAGTACAAAACACC 58.436 47.619 9.46 0.00 0.00 4.16
71 72 2.171027 TCACCGGAAGTACAAAACACCT 59.829 45.455 9.46 0.00 0.00 4.00
72 73 2.546789 CACCGGAAGTACAAAACACCTC 59.453 50.000 9.46 0.00 0.00 3.85
73 74 2.171027 ACCGGAAGTACAAAACACCTCA 59.829 45.455 9.46 0.00 0.00 3.86
74 75 3.207778 CCGGAAGTACAAAACACCTCAA 58.792 45.455 0.00 0.00 0.00 3.02
75 76 3.628487 CCGGAAGTACAAAACACCTCAAA 59.372 43.478 0.00 0.00 0.00 2.69
76 77 4.496840 CCGGAAGTACAAAACACCTCAAAC 60.497 45.833 0.00 0.00 0.00 2.93
77 78 4.095185 CGGAAGTACAAAACACCTCAAACA 59.905 41.667 0.00 0.00 0.00 2.83
78 79 5.220970 CGGAAGTACAAAACACCTCAAACAT 60.221 40.000 0.00 0.00 0.00 2.71
79 80 6.017770 CGGAAGTACAAAACACCTCAAACATA 60.018 38.462 0.00 0.00 0.00 2.29
80 81 7.467539 CGGAAGTACAAAACACCTCAAACATAA 60.468 37.037 0.00 0.00 0.00 1.90
81 82 8.357402 GGAAGTACAAAACACCTCAAACATAAT 58.643 33.333 0.00 0.00 0.00 1.28
101 102 9.621629 ACATAATAAAAATTACATCGAGGTCCA 57.378 29.630 5.75 0.00 0.00 4.02
104 105 5.835113 AAAAATTACATCGAGGTCCATGG 57.165 39.130 5.75 4.97 0.00 3.66
105 106 4.771114 AAATTACATCGAGGTCCATGGA 57.229 40.909 11.44 11.44 0.00 3.41
106 107 3.753294 ATTACATCGAGGTCCATGGAC 57.247 47.619 33.14 33.14 43.87 4.02
114 115 4.296265 GTCCATGGACCACCGAAC 57.704 61.111 31.37 6.91 39.08 3.95
115 116 1.740296 GTCCATGGACCACCGAACG 60.740 63.158 31.37 0.00 39.08 3.95
116 117 1.909287 TCCATGGACCACCGAACGA 60.909 57.895 11.44 0.00 39.42 3.85
117 118 1.740296 CCATGGACCACCGAACGAC 60.740 63.158 5.56 0.00 39.42 4.34
118 119 1.740296 CATGGACCACCGAACGACC 60.740 63.158 0.00 0.00 39.42 4.79
119 120 2.211410 ATGGACCACCGAACGACCA 61.211 57.895 0.00 0.00 39.42 4.02
120 121 1.550130 ATGGACCACCGAACGACCAT 61.550 55.000 0.00 0.00 39.42 3.55
121 122 1.004200 GGACCACCGAACGACCATT 60.004 57.895 0.00 0.00 0.00 3.16
122 123 1.296056 GGACCACCGAACGACCATTG 61.296 60.000 0.00 0.00 0.00 2.82
123 124 1.908066 GACCACCGAACGACCATTGC 61.908 60.000 0.00 0.00 0.00 3.56
124 125 2.686816 CCACCGAACGACCATTGCC 61.687 63.158 0.00 0.00 0.00 4.52
125 126 2.740826 ACCGAACGACCATTGCCG 60.741 61.111 0.00 0.00 0.00 5.69
126 127 2.740826 CCGAACGACCATTGCCGT 60.741 61.111 0.00 0.00 41.14 5.68
129 130 4.150994 AACGACCATTGCCGTTGT 57.849 50.000 12.18 0.00 45.73 3.32
130 131 1.946267 AACGACCATTGCCGTTGTC 59.054 52.632 12.18 0.00 45.73 3.18
131 132 0.816018 AACGACCATTGCCGTTGTCA 60.816 50.000 12.18 0.00 45.73 3.58
132 133 1.227999 ACGACCATTGCCGTTGTCAG 61.228 55.000 0.00 0.00 35.21 3.51
133 134 0.948623 CGACCATTGCCGTTGTCAGA 60.949 55.000 0.00 0.00 0.00 3.27
134 135 1.234821 GACCATTGCCGTTGTCAGAA 58.765 50.000 0.00 0.00 0.00 3.02
135 136 0.951558 ACCATTGCCGTTGTCAGAAC 59.048 50.000 0.00 0.00 0.00 3.01
136 137 0.110238 CCATTGCCGTTGTCAGAACG 60.110 55.000 0.00 0.00 42.74 3.95
137 138 0.865111 CATTGCCGTTGTCAGAACGA 59.135 50.000 8.98 0.00 45.64 3.85
138 139 1.136252 CATTGCCGTTGTCAGAACGAG 60.136 52.381 8.98 0.00 45.64 4.18
139 140 1.495584 TTGCCGTTGTCAGAACGAGC 61.496 55.000 8.98 10.72 45.64 5.03
140 141 2.668280 GCCGTTGTCAGAACGAGCC 61.668 63.158 8.98 0.00 45.64 4.70
141 142 2.372690 CCGTTGTCAGAACGAGCCG 61.373 63.158 8.98 0.00 45.64 5.52
142 143 2.853914 GTTGTCAGAACGAGCCGC 59.146 61.111 0.00 0.00 0.00 6.53
143 144 2.357034 TTGTCAGAACGAGCCGCC 60.357 61.111 0.00 0.00 0.00 6.13
144 145 4.717629 TGTCAGAACGAGCCGCCG 62.718 66.667 0.00 0.44 0.00 6.46
145 146 4.415332 GTCAGAACGAGCCGCCGA 62.415 66.667 8.04 0.00 0.00 5.54
146 147 4.415332 TCAGAACGAGCCGCCGAC 62.415 66.667 8.04 2.94 0.00 4.79
160 161 4.265630 CGACGCGCCGCTGTTATG 62.266 66.667 5.73 0.00 0.00 1.90
161 162 4.575245 GACGCGCCGCTGTTATGC 62.575 66.667 5.73 0.00 0.00 3.14
164 165 4.536687 GCGCCGCTGTTATGCCAC 62.537 66.667 0.00 0.00 0.00 5.01
165 166 2.819595 CGCCGCTGTTATGCCACT 60.820 61.111 0.00 0.00 0.00 4.00
166 167 2.398554 CGCCGCTGTTATGCCACTT 61.399 57.895 0.00 0.00 0.00 3.16
167 168 1.137404 GCCGCTGTTATGCCACTTG 59.863 57.895 0.00 0.00 0.00 3.16
168 169 1.586154 GCCGCTGTTATGCCACTTGT 61.586 55.000 0.00 0.00 0.00 3.16
169 170 0.447801 CCGCTGTTATGCCACTTGTC 59.552 55.000 0.00 0.00 0.00 3.18
170 171 0.095245 CGCTGTTATGCCACTTGTCG 59.905 55.000 0.00 0.00 0.00 4.35
171 172 0.179189 GCTGTTATGCCACTTGTCGC 60.179 55.000 0.00 0.00 0.00 5.19
172 173 0.447801 CTGTTATGCCACTTGTCGCC 59.552 55.000 0.00 0.00 0.00 5.54
173 174 0.250510 TGTTATGCCACTTGTCGCCA 60.251 50.000 0.00 0.00 0.00 5.69
174 175 1.094785 GTTATGCCACTTGTCGCCAT 58.905 50.000 0.00 0.00 0.00 4.40
175 176 1.472480 GTTATGCCACTTGTCGCCATT 59.528 47.619 0.00 0.00 0.00 3.16
176 177 2.680841 GTTATGCCACTTGTCGCCATTA 59.319 45.455 0.00 0.00 0.00 1.90
177 178 1.382522 ATGCCACTTGTCGCCATTAG 58.617 50.000 0.00 0.00 0.00 1.73
178 179 0.323302 TGCCACTTGTCGCCATTAGA 59.677 50.000 0.00 0.00 0.00 2.10
179 180 1.009829 GCCACTTGTCGCCATTAGAG 58.990 55.000 0.00 0.00 0.00 2.43
180 181 1.656652 CCACTTGTCGCCATTAGAGG 58.343 55.000 0.00 0.00 0.00 3.69
181 182 1.207089 CCACTTGTCGCCATTAGAGGA 59.793 52.381 0.00 0.00 0.00 3.71
182 183 2.544685 CACTTGTCGCCATTAGAGGAG 58.455 52.381 0.00 0.00 0.00 3.69
183 184 2.093973 CACTTGTCGCCATTAGAGGAGT 60.094 50.000 0.00 0.00 0.00 3.85
184 185 2.567615 ACTTGTCGCCATTAGAGGAGTT 59.432 45.455 0.00 0.00 0.00 3.01
185 186 3.008049 ACTTGTCGCCATTAGAGGAGTTT 59.992 43.478 0.00 0.00 0.00 2.66
186 187 3.695830 TGTCGCCATTAGAGGAGTTTT 57.304 42.857 0.00 0.00 0.00 2.43
187 188 4.811969 TGTCGCCATTAGAGGAGTTTTA 57.188 40.909 0.00 0.00 0.00 1.52
188 189 4.755411 TGTCGCCATTAGAGGAGTTTTAG 58.245 43.478 0.00 0.00 0.00 1.85
189 190 4.120589 GTCGCCATTAGAGGAGTTTTAGG 58.879 47.826 0.00 0.00 0.00 2.69
190 191 3.134081 TCGCCATTAGAGGAGTTTTAGGG 59.866 47.826 0.00 0.00 0.00 3.53
191 192 3.118371 CGCCATTAGAGGAGTTTTAGGGT 60.118 47.826 0.00 0.00 0.00 4.34
192 193 4.200092 GCCATTAGAGGAGTTTTAGGGTG 58.800 47.826 0.00 0.00 0.00 4.61
193 194 4.324331 GCCATTAGAGGAGTTTTAGGGTGT 60.324 45.833 0.00 0.00 0.00 4.16
194 195 5.429130 CCATTAGAGGAGTTTTAGGGTGTC 58.571 45.833 0.00 0.00 0.00 3.67
195 196 5.045869 CCATTAGAGGAGTTTTAGGGTGTCA 60.046 44.000 0.00 0.00 0.00 3.58
196 197 6.472887 CATTAGAGGAGTTTTAGGGTGTCAA 58.527 40.000 0.00 0.00 0.00 3.18
197 198 6.503560 TTAGAGGAGTTTTAGGGTGTCAAA 57.496 37.500 0.00 0.00 0.00 2.69
198 199 5.382664 AGAGGAGTTTTAGGGTGTCAAAA 57.617 39.130 0.00 0.00 0.00 2.44
199 200 5.953571 AGAGGAGTTTTAGGGTGTCAAAAT 58.046 37.500 0.00 0.00 0.00 1.82
200 201 5.770162 AGAGGAGTTTTAGGGTGTCAAAATG 59.230 40.000 0.00 0.00 0.00 2.32
201 202 5.454966 AGGAGTTTTAGGGTGTCAAAATGT 58.545 37.500 0.00 0.00 0.00 2.71
202 203 5.301805 AGGAGTTTTAGGGTGTCAAAATGTG 59.698 40.000 0.00 0.00 0.00 3.21
203 204 5.508994 GGAGTTTTAGGGTGTCAAAATGTGG 60.509 44.000 0.00 0.00 0.00 4.17
204 205 4.055360 GTTTTAGGGTGTCAAAATGTGGC 58.945 43.478 0.00 0.00 0.00 5.01
205 206 1.529226 TAGGGTGTCAAAATGTGGCG 58.471 50.000 0.00 0.00 33.03 5.69
206 207 1.178534 AGGGTGTCAAAATGTGGCGG 61.179 55.000 0.00 0.00 33.03 6.13
207 208 1.175983 GGGTGTCAAAATGTGGCGGA 61.176 55.000 0.00 0.00 33.03 5.54
208 209 0.240945 GGTGTCAAAATGTGGCGGAG 59.759 55.000 0.00 0.00 33.03 4.63
224 225 3.546002 CGGAGCGTAAACCAAATTCAA 57.454 42.857 0.00 0.00 0.00 2.69
225 226 3.488489 CGGAGCGTAAACCAAATTCAAG 58.512 45.455 0.00 0.00 0.00 3.02
226 227 3.058501 CGGAGCGTAAACCAAATTCAAGT 60.059 43.478 0.00 0.00 0.00 3.16
227 228 4.226761 GGAGCGTAAACCAAATTCAAGTG 58.773 43.478 0.00 0.00 0.00 3.16
228 229 4.261447 GGAGCGTAAACCAAATTCAAGTGT 60.261 41.667 0.00 0.00 0.00 3.55
229 230 4.606961 AGCGTAAACCAAATTCAAGTGTG 58.393 39.130 0.00 0.00 0.00 3.82
230 231 4.097286 AGCGTAAACCAAATTCAAGTGTGT 59.903 37.500 0.00 0.00 0.00 3.72
231 232 4.439776 GCGTAAACCAAATTCAAGTGTGTC 59.560 41.667 0.00 0.00 0.00 3.67
232 233 5.574082 CGTAAACCAAATTCAAGTGTGTCA 58.426 37.500 0.00 0.00 0.00 3.58
233 234 6.030849 CGTAAACCAAATTCAAGTGTGTCAA 58.969 36.000 0.00 0.00 0.00 3.18
234 235 6.528423 CGTAAACCAAATTCAAGTGTGTCAAA 59.472 34.615 0.00 0.00 0.00 2.69
235 236 7.062371 CGTAAACCAAATTCAAGTGTGTCAAAA 59.938 33.333 0.00 0.00 0.00 2.44
236 237 7.920160 AAACCAAATTCAAGTGTGTCAAAAT 57.080 28.000 0.00 0.00 0.00 1.82
237 238 6.907206 ACCAAATTCAAGTGTGTCAAAATG 57.093 33.333 0.00 0.00 0.00 2.32
238 239 6.405538 ACCAAATTCAAGTGTGTCAAAATGT 58.594 32.000 0.00 0.00 0.00 2.71
239 240 6.313411 ACCAAATTCAAGTGTGTCAAAATGTG 59.687 34.615 0.00 0.00 0.00 3.21
240 241 6.238157 CCAAATTCAAGTGTGTCAAAATGTGG 60.238 38.462 0.00 0.00 0.00 4.17
241 242 4.383850 TTCAAGTGTGTCAAAATGTGGG 57.616 40.909 0.00 0.00 0.00 4.61
242 243 3.625853 TCAAGTGTGTCAAAATGTGGGA 58.374 40.909 0.00 0.00 0.00 4.37
243 244 3.631686 TCAAGTGTGTCAAAATGTGGGAG 59.368 43.478 0.00 0.00 0.00 4.30
244 245 1.956477 AGTGTGTCAAAATGTGGGAGC 59.044 47.619 0.00 0.00 0.00 4.70
245 246 1.680735 GTGTGTCAAAATGTGGGAGCA 59.319 47.619 0.00 0.00 0.00 4.26
246 247 2.297033 GTGTGTCAAAATGTGGGAGCAT 59.703 45.455 0.00 0.00 0.00 3.79
247 248 2.296752 TGTGTCAAAATGTGGGAGCATG 59.703 45.455 0.00 0.00 0.00 4.06
248 249 1.894466 TGTCAAAATGTGGGAGCATGG 59.106 47.619 0.00 0.00 0.00 3.66
249 250 0.896923 TCAAAATGTGGGAGCATGGC 59.103 50.000 0.00 0.00 0.00 4.40
250 251 0.108041 CAAAATGTGGGAGCATGGCC 60.108 55.000 0.00 0.00 0.00 5.36
251 252 0.252375 AAAATGTGGGAGCATGGCCT 60.252 50.000 3.32 0.00 0.00 5.19
252 253 0.630673 AAATGTGGGAGCATGGCCTA 59.369 50.000 3.32 0.00 0.00 3.93
253 254 0.855598 AATGTGGGAGCATGGCCTAT 59.144 50.000 3.32 0.00 0.00 2.57
254 255 1.746157 ATGTGGGAGCATGGCCTATA 58.254 50.000 3.32 0.00 0.00 1.31
255 256 1.517238 TGTGGGAGCATGGCCTATAA 58.483 50.000 3.32 0.00 0.00 0.98
256 257 1.849692 TGTGGGAGCATGGCCTATAAA 59.150 47.619 3.32 0.00 0.00 1.40
257 258 2.243478 TGTGGGAGCATGGCCTATAAAA 59.757 45.455 3.32 0.00 0.00 1.52
258 259 3.295973 GTGGGAGCATGGCCTATAAAAA 58.704 45.455 3.32 0.00 0.00 1.94
259 260 3.068165 GTGGGAGCATGGCCTATAAAAAC 59.932 47.826 3.32 0.00 0.00 2.43
260 261 3.052944 TGGGAGCATGGCCTATAAAAACT 60.053 43.478 3.32 0.00 0.00 2.66
261 262 3.960755 GGGAGCATGGCCTATAAAAACTT 59.039 43.478 3.32 0.00 0.00 2.66
262 263 5.137551 GGGAGCATGGCCTATAAAAACTTA 58.862 41.667 3.32 0.00 0.00 2.24
263 264 5.241728 GGGAGCATGGCCTATAAAAACTTAG 59.758 44.000 3.32 0.00 0.00 2.18
264 265 5.241728 GGAGCATGGCCTATAAAAACTTAGG 59.758 44.000 3.32 0.00 38.42 2.69
265 266 5.140454 AGCATGGCCTATAAAAACTTAGGG 58.860 41.667 3.32 0.00 36.32 3.53
266 267 4.893524 GCATGGCCTATAAAAACTTAGGGT 59.106 41.667 3.32 0.00 36.32 4.34
267 268 5.221244 GCATGGCCTATAAAAACTTAGGGTG 60.221 44.000 3.32 0.00 36.32 4.61
268 269 4.862371 TGGCCTATAAAAACTTAGGGTGG 58.138 43.478 3.32 0.00 36.32 4.61
269 270 4.292836 TGGCCTATAAAAACTTAGGGTGGT 59.707 41.667 3.32 0.00 36.32 4.16
270 271 4.885907 GGCCTATAAAAACTTAGGGTGGTC 59.114 45.833 0.00 0.00 36.32 4.02
271 272 5.503002 GCCTATAAAAACTTAGGGTGGTCA 58.497 41.667 0.00 0.00 36.32 4.02
272 273 5.947566 GCCTATAAAAACTTAGGGTGGTCAA 59.052 40.000 0.00 0.00 36.32 3.18
273 274 6.434965 GCCTATAAAAACTTAGGGTGGTCAAA 59.565 38.462 0.00 0.00 36.32 2.69
274 275 7.362660 GCCTATAAAAACTTAGGGTGGTCAAAG 60.363 40.741 0.00 0.00 36.32 2.77
275 276 7.668469 CCTATAAAAACTTAGGGTGGTCAAAGT 59.332 37.037 0.00 0.00 32.83 2.66
276 277 5.592104 AAAAACTTAGGGTGGTCAAAGTG 57.408 39.130 0.00 0.00 32.69 3.16
277 278 2.951229 ACTTAGGGTGGTCAAAGTGG 57.049 50.000 0.00 0.00 31.20 4.00
278 279 1.423921 ACTTAGGGTGGTCAAAGTGGG 59.576 52.381 0.00 0.00 31.20 4.61
279 280 0.111639 TTAGGGTGGTCAAAGTGGGC 59.888 55.000 0.00 0.00 0.00 5.36
280 281 2.119484 TAGGGTGGTCAAAGTGGGCG 62.119 60.000 0.00 0.00 0.00 6.13
281 282 2.983592 GGTGGTCAAAGTGGGCGG 60.984 66.667 0.00 0.00 0.00 6.13
282 283 2.112297 GTGGTCAAAGTGGGCGGA 59.888 61.111 0.00 0.00 0.00 5.54
283 284 1.527380 GTGGTCAAAGTGGGCGGAA 60.527 57.895 0.00 0.00 0.00 4.30
284 285 1.228124 TGGTCAAAGTGGGCGGAAG 60.228 57.895 0.00 0.00 0.00 3.46
285 286 1.072505 GGTCAAAGTGGGCGGAAGA 59.927 57.895 0.00 0.00 0.00 2.87
286 287 0.322546 GGTCAAAGTGGGCGGAAGAT 60.323 55.000 0.00 0.00 0.00 2.40
287 288 1.534729 GTCAAAGTGGGCGGAAGATT 58.465 50.000 0.00 0.00 0.00 2.40
288 289 2.617021 GGTCAAAGTGGGCGGAAGATTA 60.617 50.000 0.00 0.00 0.00 1.75
289 290 3.078837 GTCAAAGTGGGCGGAAGATTAA 58.921 45.455 0.00 0.00 0.00 1.40
290 291 3.078837 TCAAAGTGGGCGGAAGATTAAC 58.921 45.455 0.00 0.00 0.00 2.01
291 292 2.817258 CAAAGTGGGCGGAAGATTAACA 59.183 45.455 0.00 0.00 0.00 2.41
292 293 2.109425 AGTGGGCGGAAGATTAACAC 57.891 50.000 0.00 0.00 0.00 3.32
293 294 1.349688 AGTGGGCGGAAGATTAACACA 59.650 47.619 0.00 0.00 0.00 3.72
294 295 2.026262 AGTGGGCGGAAGATTAACACAT 60.026 45.455 0.00 0.00 0.00 3.21
295 296 2.752903 GTGGGCGGAAGATTAACACATT 59.247 45.455 0.00 0.00 0.00 2.71
296 297 3.192633 GTGGGCGGAAGATTAACACATTT 59.807 43.478 0.00 0.00 0.00 2.32
297 298 3.442273 TGGGCGGAAGATTAACACATTTC 59.558 43.478 0.00 0.00 0.00 2.17
298 299 3.442273 GGGCGGAAGATTAACACATTTCA 59.558 43.478 0.00 0.00 0.00 2.69
299 300 4.412207 GGCGGAAGATTAACACATTTCAC 58.588 43.478 0.00 0.00 0.00 3.18
300 301 4.156008 GGCGGAAGATTAACACATTTCACT 59.844 41.667 0.00 0.00 0.00 3.41
301 302 5.335661 GGCGGAAGATTAACACATTTCACTT 60.336 40.000 0.00 0.00 0.00 3.16
302 303 5.569059 GCGGAAGATTAACACATTTCACTTG 59.431 40.000 0.00 0.00 0.00 3.16
303 304 6.086222 CGGAAGATTAACACATTTCACTTGG 58.914 40.000 0.00 0.00 0.00 3.61
304 305 6.072728 CGGAAGATTAACACATTTCACTTGGA 60.073 38.462 0.00 0.00 0.00 3.53
305 306 7.521423 CGGAAGATTAACACATTTCACTTGGAA 60.521 37.037 0.00 0.00 0.00 3.53
306 307 7.809806 GGAAGATTAACACATTTCACTTGGAAG 59.190 37.037 0.00 0.00 36.72 3.46
307 308 7.219484 AGATTAACACATTTCACTTGGAAGG 57.781 36.000 0.00 0.00 36.72 3.46
308 309 5.782893 TTAACACATTTCACTTGGAAGGG 57.217 39.130 0.00 0.00 36.72 3.95
309 310 2.597455 ACACATTTCACTTGGAAGGGG 58.403 47.619 0.00 0.00 36.72 4.79
310 311 2.091333 ACACATTTCACTTGGAAGGGGT 60.091 45.455 0.00 0.00 36.72 4.95
311 312 3.139397 ACACATTTCACTTGGAAGGGGTA 59.861 43.478 0.00 0.00 36.72 3.69
312 313 3.506067 CACATTTCACTTGGAAGGGGTAC 59.494 47.826 0.00 0.00 36.72 3.34
334 335 3.728373 GCCCGGGGTGGTTCTGAT 61.728 66.667 25.28 0.00 35.15 2.90
335 336 2.272146 CCCGGGGTGGTTCTGATG 59.728 66.667 14.71 0.00 35.15 3.07
336 337 2.297895 CCCGGGGTGGTTCTGATGA 61.298 63.158 14.71 0.00 35.15 2.92
337 338 1.635817 CCCGGGGTGGTTCTGATGAT 61.636 60.000 14.71 0.00 35.15 2.45
338 339 0.464373 CCGGGGTGGTTCTGATGATG 60.464 60.000 0.00 0.00 0.00 3.07
339 340 1.097547 CGGGGTGGTTCTGATGATGC 61.098 60.000 0.00 0.00 0.00 3.91
340 341 0.257039 GGGGTGGTTCTGATGATGCT 59.743 55.000 0.00 0.00 0.00 3.79
341 342 1.673168 GGGTGGTTCTGATGATGCTC 58.327 55.000 0.00 0.00 0.00 4.26
342 343 1.673168 GGTGGTTCTGATGATGCTCC 58.327 55.000 0.00 0.00 0.00 4.70
343 344 1.065199 GGTGGTTCTGATGATGCTCCA 60.065 52.381 0.00 0.00 0.00 3.86
344 345 2.012673 GTGGTTCTGATGATGCTCCAC 58.987 52.381 0.00 0.00 37.33 4.02
345 346 1.065199 TGGTTCTGATGATGCTCCACC 60.065 52.381 0.00 0.00 0.00 4.61
346 347 1.065199 GGTTCTGATGATGCTCCACCA 60.065 52.381 0.00 0.00 0.00 4.17
347 348 2.012673 GTTCTGATGATGCTCCACCAC 58.987 52.381 0.00 0.00 0.00 4.16
348 349 1.576577 TCTGATGATGCTCCACCACT 58.423 50.000 0.00 0.00 0.00 4.00
349 350 1.208776 TCTGATGATGCTCCACCACTG 59.791 52.381 0.00 0.00 0.00 3.66
350 351 0.253894 TGATGATGCTCCACCACTGG 59.746 55.000 0.00 0.00 39.23 4.00
351 352 0.465097 GATGATGCTCCACCACTGGG 60.465 60.000 0.00 0.00 38.25 4.45
423 424 4.322057 ACATCTAATTTGGGCTGTCCTT 57.678 40.909 0.00 0.00 36.20 3.36
441 442 3.019564 CCTTTAAGCTGCCATGCTAGTT 58.980 45.455 0.00 0.00 43.24 2.24
443 444 2.042686 TAAGCTGCCATGCTAGTTGG 57.957 50.000 8.94 8.94 43.24 3.77
448 449 3.211963 CCATGCTAGTTGGGCCGC 61.212 66.667 0.00 0.00 0.00 6.53
457 458 3.381136 TTGGGCCGCTCCATTTGC 61.381 61.111 0.00 0.00 36.58 3.68
466 467 1.689959 GCTCCATTTGCGTTTCTGTG 58.310 50.000 0.00 0.00 0.00 3.66
467 468 1.266718 GCTCCATTTGCGTTTCTGTGA 59.733 47.619 0.00 0.00 0.00 3.58
468 469 2.287547 GCTCCATTTGCGTTTCTGTGAA 60.288 45.455 0.00 0.00 0.00 3.18
469 470 3.300009 CTCCATTTGCGTTTCTGTGAAC 58.700 45.455 0.00 0.00 0.00 3.18
477 478 3.169207 CGTTTCTGTGAACGGACATTC 57.831 47.619 9.87 0.00 46.29 2.67
478 479 2.096417 CGTTTCTGTGAACGGACATTCC 60.096 50.000 9.87 0.00 46.29 3.01
498 499 3.202151 TCCCTGGATAGGCCTTACTTTTG 59.798 47.826 12.58 0.00 43.16 2.44
531 532 0.890996 AAGCAACTGGGCTGCAGTAC 60.891 55.000 16.64 9.19 45.07 2.73
599 600 8.902540 AACAAAGATTCTCAAATAAAAACCCC 57.097 30.769 0.00 0.00 0.00 4.95
795 801 4.218417 GCACAACATATACATCCATTCCCC 59.782 45.833 0.00 0.00 0.00 4.81
796 802 5.384336 CACAACATATACATCCATTCCCCA 58.616 41.667 0.00 0.00 0.00 4.96
938 954 7.109884 CACAACAAATCACAAATAACAACACG 58.890 34.615 0.00 0.00 0.00 4.49
956 974 2.028930 CACGGAGAAAAGGAGCTGTAGT 60.029 50.000 0.00 0.00 0.00 2.73
987 1005 2.292918 TGTGGTTAGCCTCCTCCTGTAT 60.293 50.000 0.00 0.00 35.27 2.29
1057 1075 4.881440 TCATGGCCGCCCTCATGC 62.881 66.667 7.03 0.00 40.20 4.06
1295 1330 4.892934 TGCTACTCCAAACACTTTCCAAAT 59.107 37.500 0.00 0.00 0.00 2.32
1428 1473 1.400494 GCGCCGTTGAAGTAATCCAAT 59.600 47.619 0.00 0.00 0.00 3.16
1431 1476 4.116961 CGCCGTTGAAGTAATCCAATAGA 58.883 43.478 0.00 0.00 0.00 1.98
1433 1478 5.501897 CGCCGTTGAAGTAATCCAATAGAAC 60.502 44.000 0.00 0.00 0.00 3.01
1522 1570 7.806014 TCCAGCAATTTTTGTAGTAACGATTTC 59.194 33.333 0.00 0.00 0.00 2.17
1641 1711 6.384178 AGCACAAACAAGTTTTTCGTTTAC 57.616 33.333 0.00 0.00 31.85 2.01
1676 1746 6.775594 ACATGAGTATGTGAGCAAGTACTA 57.224 37.500 0.00 0.00 45.54 1.82
1690 1760 7.094549 TGAGCAAGTACTATTGGCGTTTTTAAT 60.095 33.333 0.00 0.00 0.00 1.40
1836 1912 2.128771 GCCAGGAGCAGTAAAATCCA 57.871 50.000 0.00 0.00 42.97 3.41
1837 1913 2.446435 GCCAGGAGCAGTAAAATCCAA 58.554 47.619 0.00 0.00 42.97 3.53
1838 1914 2.825532 GCCAGGAGCAGTAAAATCCAAA 59.174 45.455 0.00 0.00 42.97 3.28
1839 1915 3.258123 GCCAGGAGCAGTAAAATCCAAAA 59.742 43.478 0.00 0.00 42.97 2.44
1840 1916 4.081476 GCCAGGAGCAGTAAAATCCAAAAT 60.081 41.667 0.00 0.00 42.97 1.82
1841 1917 5.127031 GCCAGGAGCAGTAAAATCCAAAATA 59.873 40.000 0.00 0.00 42.97 1.40
1843 1919 7.633553 GCCAGGAGCAGTAAAATCCAAAATAAT 60.634 37.037 0.00 0.00 42.97 1.28
1844 1920 8.260114 CCAGGAGCAGTAAAATCCAAAATAATT 58.740 33.333 0.00 0.00 35.45 1.40
1899 1985 7.043961 TGTGCCATACTTTCACAAATGTTTA 57.956 32.000 0.00 0.00 37.73 2.01
1936 2022 5.462034 TTTGAGAACATTTTGCAAAACCG 57.538 34.783 26.05 21.09 0.00 4.44
1996 2082 9.893634 AAATCATGAATAATTTCAAAGCCATGA 57.106 25.926 0.00 0.00 44.70 3.07
2012 2098 9.158233 CAAAGCCATGAACATTTATTGAAATCT 57.842 29.630 0.00 0.00 32.73 2.40
2092 2181 5.439721 ACTATCAAGCATGCAGGTCAAATA 58.560 37.500 21.98 6.61 0.00 1.40
2109 2198 6.288294 GTCAAATAAATAGGCCCCATTTTCC 58.712 40.000 15.92 0.00 0.00 3.13
2122 2211 3.512724 CCCATTTTCCAGCACAAAGATCT 59.487 43.478 0.00 0.00 0.00 2.75
2139 2228 8.424133 ACAAAGATCTTCACTTGCCTTTTAAAT 58.576 29.630 8.78 0.00 0.00 1.40
2165 2254 9.790344 TTGTACTATATACTACTCCCTCAGTTC 57.210 37.037 0.00 0.00 36.43 3.01
2166 2255 8.381636 TGTACTATATACTACTCCCTCAGTTCC 58.618 40.741 0.00 0.00 36.43 3.62
2167 2256 7.651229 ACTATATACTACTCCCTCAGTTCCT 57.349 40.000 0.00 0.00 36.43 3.36
2168 2257 8.754258 ACTATATACTACTCCCTCAGTTCCTA 57.246 38.462 0.00 0.00 36.43 2.94
2169 2258 9.180282 ACTATATACTACTCCCTCAGTTCCTAA 57.820 37.037 0.00 0.00 36.43 2.69
2176 2265 9.369672 ACTACTCCCTCAGTTCCTAAATATAAG 57.630 37.037 0.00 0.00 36.43 1.73
2177 2266 9.369672 CTACTCCCTCAGTTCCTAAATATAAGT 57.630 37.037 0.00 0.00 36.43 2.24
2178 2267 8.252624 ACTCCCTCAGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 26.56 3.01
2179 2268 8.068733 ACTCCCTCAGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 26.56 3.24
2180 2269 8.855804 TCCCTCAGTTCCTAAATATAAGTCTT 57.144 34.615 0.00 0.00 0.00 3.01
2181 2270 9.280456 TCCCTCAGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
2182 2271 9.907229 CCCTCAGTTCCTAAATATAAGTCTTTT 57.093 33.333 0.00 0.00 0.00 2.27
2215 2304 2.394930 TGGACAACCACATACGGATG 57.605 50.000 5.94 5.94 41.77 3.51
2217 2306 2.832733 TGGACAACCACATACGGATGTA 59.167 45.455 14.23 0.00 44.82 2.29
2218 2307 3.452990 TGGACAACCACATACGGATGTAT 59.547 43.478 14.23 1.38 44.82 2.29
2219 2308 4.650131 TGGACAACCACATACGGATGTATA 59.350 41.667 14.23 0.00 44.82 1.47
2220 2309 5.305902 TGGACAACCACATACGGATGTATAT 59.694 40.000 14.23 0.00 44.82 0.86
2221 2310 6.494146 TGGACAACCACATACGGATGTATATA 59.506 38.462 14.23 0.00 44.82 0.86
2222 2311 7.033791 GGACAACCACATACGGATGTATATAG 58.966 42.308 14.23 5.46 44.82 1.31
2223 2312 7.094075 GGACAACCACATACGGATGTATATAGA 60.094 40.741 14.23 0.00 44.82 1.98
2224 2313 7.600065 ACAACCACATACGGATGTATATAGAC 58.400 38.462 14.23 0.00 44.82 2.59
2225 2314 7.231925 ACAACCACATACGGATGTATATAGACA 59.768 37.037 14.23 2.07 44.82 3.41
2226 2315 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
2227 2316 9.470399 AACCACATACGGATGTATATAGACATA 57.530 33.333 14.23 0.00 44.82 2.29
2228 2317 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
2249 2338 9.851686 ACATATTTTGGAGTATAGATTTGCTCA 57.148 29.630 0.00 0.00 0.00 4.26
2254 2343 9.859427 TTTTGGAGTATAGATTTGCTCATTTTG 57.141 29.630 0.00 0.00 0.00 2.44
2255 2344 7.031226 TGGAGTATAGATTTGCTCATTTTGC 57.969 36.000 0.00 0.00 0.00 3.68
2256 2345 6.830324 TGGAGTATAGATTTGCTCATTTTGCT 59.170 34.615 0.00 0.00 0.00 3.91
2257 2346 7.012704 TGGAGTATAGATTTGCTCATTTTGCTC 59.987 37.037 0.00 0.00 0.00 4.26
2258 2347 7.269477 AGTATAGATTTGCTCATTTTGCTCC 57.731 36.000 0.00 0.00 0.00 4.70
2259 2348 3.498927 AGATTTGCTCATTTTGCTCCG 57.501 42.857 0.00 0.00 0.00 4.63
2260 2349 2.821969 AGATTTGCTCATTTTGCTCCGT 59.178 40.909 0.00 0.00 0.00 4.69
2261 2350 4.009675 AGATTTGCTCATTTTGCTCCGTA 58.990 39.130 0.00 0.00 0.00 4.02
2262 2351 4.641989 AGATTTGCTCATTTTGCTCCGTAT 59.358 37.500 0.00 0.00 0.00 3.06
2263 2352 3.763097 TTGCTCATTTTGCTCCGTATG 57.237 42.857 0.00 0.00 0.00 2.39
2264 2353 2.710377 TGCTCATTTTGCTCCGTATGT 58.290 42.857 0.00 0.00 0.00 2.29
2265 2354 3.867857 TGCTCATTTTGCTCCGTATGTA 58.132 40.909 0.00 0.00 0.00 2.29
2266 2355 3.871006 TGCTCATTTTGCTCCGTATGTAG 59.129 43.478 0.00 0.00 0.00 2.74
2267 2356 3.871594 GCTCATTTTGCTCCGTATGTAGT 59.128 43.478 0.00 0.00 0.00 2.73
2268 2357 4.025647 GCTCATTTTGCTCCGTATGTAGTC 60.026 45.833 0.00 0.00 0.00 2.59
2269 2358 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2270 2359 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2271 2360 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
2272 2361 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
2273 2362 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
2274 2363 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
2275 2364 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
2276 2365 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
2277 2366 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
2278 2367 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
2279 2368 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
2280 2369 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
2281 2370 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
2282 2371 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
2283 2372 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
2284 2373 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
2285 2374 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
2286 2375 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
2287 2376 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
2288 2377 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
2289 2378 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
2290 2379 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
2291 2380 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
2292 2381 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
2293 2382 7.657761 TCACTTGTTGAAATCTCTAGAAAGACC 59.342 37.037 0.00 0.00 0.00 3.85
2294 2383 7.659390 CACTTGTTGAAATCTCTAGAAAGACCT 59.341 37.037 0.00 0.00 0.00 3.85
2295 2384 8.871125 ACTTGTTGAAATCTCTAGAAAGACCTA 58.129 33.333 0.00 0.00 0.00 3.08
2296 2385 9.883142 CTTGTTGAAATCTCTAGAAAGACCTAT 57.117 33.333 0.00 0.00 0.00 2.57
2317 2406 7.957992 CTATATTTAGGAACGGAGGGAGTAT 57.042 40.000 0.00 0.00 0.00 2.12
2318 2407 6.854091 ATATTTAGGAACGGAGGGAGTATC 57.146 41.667 0.00 0.00 0.00 2.24
2319 2408 3.967467 TTAGGAACGGAGGGAGTATCT 57.033 47.619 0.00 0.00 33.73 1.98
2320 2409 2.074729 AGGAACGGAGGGAGTATCTG 57.925 55.000 0.00 0.00 33.73 2.90
2321 2410 1.569548 AGGAACGGAGGGAGTATCTGA 59.430 52.381 0.00 0.00 33.73 3.27
2322 2411 1.682323 GGAACGGAGGGAGTATCTGAC 59.318 57.143 0.00 0.00 33.73 3.51
2323 2412 2.376109 GAACGGAGGGAGTATCTGACA 58.624 52.381 0.00 0.00 33.73 3.58
2324 2413 1.765230 ACGGAGGGAGTATCTGACAC 58.235 55.000 0.00 0.00 33.73 3.67
2325 2414 0.663688 CGGAGGGAGTATCTGACACG 59.336 60.000 0.00 0.00 33.73 4.49
2326 2415 1.033574 GGAGGGAGTATCTGACACGG 58.966 60.000 0.00 0.00 33.73 4.94
2327 2416 1.033574 GAGGGAGTATCTGACACGGG 58.966 60.000 0.00 0.00 33.73 5.28
2328 2417 0.629596 AGGGAGTATCTGACACGGGA 59.370 55.000 0.00 0.00 33.73 5.14
2329 2418 1.218196 AGGGAGTATCTGACACGGGAT 59.782 52.381 0.00 0.00 33.73 3.85
2330 2419 2.445905 AGGGAGTATCTGACACGGGATA 59.554 50.000 0.00 0.00 33.73 2.59
2331 2420 2.557490 GGGAGTATCTGACACGGGATAC 59.443 54.545 0.00 5.57 42.46 2.24
2332 2421 3.220110 GGAGTATCTGACACGGGATACA 58.780 50.000 13.06 0.00 43.74 2.29
2333 2422 3.253677 GGAGTATCTGACACGGGATACAG 59.746 52.174 13.06 0.00 43.74 2.74
2334 2423 4.135306 GAGTATCTGACACGGGATACAGA 58.865 47.826 13.75 13.75 43.74 3.41
2335 2424 4.533815 AGTATCTGACACGGGATACAGAA 58.466 43.478 14.88 5.58 43.74 3.02
2336 2425 4.580995 AGTATCTGACACGGGATACAGAAG 59.419 45.833 14.88 0.00 43.74 2.85
2337 2426 2.100197 TCTGACACGGGATACAGAAGG 58.900 52.381 10.32 0.00 36.63 3.46
2338 2427 0.535335 TGACACGGGATACAGAAGGC 59.465 55.000 0.00 0.00 39.74 4.35
2339 2428 0.179081 GACACGGGATACAGAAGGCC 60.179 60.000 0.00 0.00 39.74 5.19
2340 2429 0.617820 ACACGGGATACAGAAGGCCT 60.618 55.000 0.00 0.00 39.74 5.19
2341 2430 0.105039 CACGGGATACAGAAGGCCTC 59.895 60.000 5.23 0.00 39.74 4.70
2342 2431 1.364171 CGGGATACAGAAGGCCTCG 59.636 63.158 5.23 0.00 39.74 4.63
2343 2432 1.749033 GGGATACAGAAGGCCTCGG 59.251 63.158 5.23 3.03 39.74 4.63
2344 2433 1.049289 GGGATACAGAAGGCCTCGGT 61.049 60.000 5.23 9.43 36.37 4.69
2345 2434 0.105039 GGATACAGAAGGCCTCGGTG 59.895 60.000 5.23 6.56 34.07 4.94
2346 2435 0.105039 GATACAGAAGGCCTCGGTGG 59.895 60.000 5.23 0.00 34.07 4.61
2347 2436 0.325296 ATACAGAAGGCCTCGGTGGA 60.325 55.000 5.23 0.00 38.35 4.02
2353 2442 2.893398 GGCCTCGGTGGACTACTG 59.107 66.667 0.00 0.00 41.93 2.74
2354 2443 1.982938 GGCCTCGGTGGACTACTGT 60.983 63.158 0.00 0.00 41.93 3.55
2355 2444 0.682209 GGCCTCGGTGGACTACTGTA 60.682 60.000 0.00 0.00 41.93 2.74
2356 2445 0.455005 GCCTCGGTGGACTACTGTAC 59.545 60.000 0.00 0.00 38.35 2.90
2357 2446 1.101331 CCTCGGTGGACTACTGTACC 58.899 60.000 0.00 0.00 38.35 3.34
2358 2447 1.615116 CCTCGGTGGACTACTGTACCA 60.615 57.143 0.00 0.00 38.35 3.25
2359 2448 2.376109 CTCGGTGGACTACTGTACCAT 58.624 52.381 1.08 0.00 36.98 3.55
2360 2449 2.758979 CTCGGTGGACTACTGTACCATT 59.241 50.000 1.08 0.00 36.98 3.16
2361 2450 3.949754 CTCGGTGGACTACTGTACCATTA 59.050 47.826 1.08 0.00 36.98 1.90
2362 2451 4.343231 TCGGTGGACTACTGTACCATTAA 58.657 43.478 1.08 0.00 36.98 1.40
2363 2452 4.400251 TCGGTGGACTACTGTACCATTAAG 59.600 45.833 1.08 0.00 36.98 1.85
2364 2453 4.159135 CGGTGGACTACTGTACCATTAAGT 59.841 45.833 1.08 0.00 36.09 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.425915 TCGCAAAAATAAAACATATACGCAC 57.574 32.000 0.00 0.00 0.00 5.34
2 3 9.391794 CTTTTCGCAAAAATAAAACATATACGC 57.608 29.630 0.00 0.00 34.00 4.42
3 4 9.879973 CCTTTTCGCAAAAATAAAACATATACG 57.120 29.630 0.00 0.00 34.00 3.06
8 9 8.600449 TGATCCTTTTCGCAAAAATAAAACAT 57.400 26.923 0.00 0.00 34.00 2.71
9 10 8.425577 TTGATCCTTTTCGCAAAAATAAAACA 57.574 26.923 0.00 0.00 34.00 2.83
10 11 9.877137 ATTTGATCCTTTTCGCAAAAATAAAAC 57.123 25.926 0.00 0.00 34.00 2.43
12 13 9.487790 AGATTTGATCCTTTTCGCAAAAATAAA 57.512 25.926 0.00 0.00 34.00 1.40
15 16 9.657419 AATAGATTTGATCCTTTTCGCAAAAAT 57.343 25.926 0.00 0.00 34.00 1.82
37 38 9.976511 TGTACTTCCGGTGAATCTTTATAATAG 57.023 33.333 0.00 0.00 0.00 1.73
39 40 9.675464 TTTGTACTTCCGGTGAATCTTTATAAT 57.325 29.630 0.00 0.00 0.00 1.28
40 41 9.504708 TTTTGTACTTCCGGTGAATCTTTATAA 57.495 29.630 0.00 0.00 0.00 0.98
41 42 8.938906 GTTTTGTACTTCCGGTGAATCTTTATA 58.061 33.333 0.00 0.00 0.00 0.98
42 43 7.446013 TGTTTTGTACTTCCGGTGAATCTTTAT 59.554 33.333 0.00 0.00 0.00 1.40
43 44 6.766944 TGTTTTGTACTTCCGGTGAATCTTTA 59.233 34.615 0.00 0.00 0.00 1.85
44 45 5.591067 TGTTTTGTACTTCCGGTGAATCTTT 59.409 36.000 0.00 0.00 0.00 2.52
45 46 5.008316 GTGTTTTGTACTTCCGGTGAATCTT 59.992 40.000 0.00 0.00 0.00 2.40
46 47 4.514066 GTGTTTTGTACTTCCGGTGAATCT 59.486 41.667 0.00 0.00 0.00 2.40
47 48 4.319984 GGTGTTTTGTACTTCCGGTGAATC 60.320 45.833 0.00 0.00 0.00 2.52
48 49 3.566742 GGTGTTTTGTACTTCCGGTGAAT 59.433 43.478 0.00 0.00 0.00 2.57
49 50 2.944349 GGTGTTTTGTACTTCCGGTGAA 59.056 45.455 0.00 0.00 0.00 3.18
50 51 2.171027 AGGTGTTTTGTACTTCCGGTGA 59.829 45.455 0.00 0.00 0.00 4.02
51 52 2.546789 GAGGTGTTTTGTACTTCCGGTG 59.453 50.000 0.00 0.00 0.00 4.94
52 53 2.171027 TGAGGTGTTTTGTACTTCCGGT 59.829 45.455 0.00 0.00 0.00 5.28
53 54 2.841215 TGAGGTGTTTTGTACTTCCGG 58.159 47.619 0.00 0.00 0.00 5.14
54 55 4.095185 TGTTTGAGGTGTTTTGTACTTCCG 59.905 41.667 0.00 0.00 0.00 4.30
55 56 5.570234 TGTTTGAGGTGTTTTGTACTTCC 57.430 39.130 0.00 0.00 0.00 3.46
75 76 9.621629 TGGACCTCGATGTAATTTTTATTATGT 57.378 29.630 0.00 0.00 0.00 2.29
78 79 9.062524 CCATGGACCTCGATGTAATTTTTATTA 57.937 33.333 5.56 0.00 31.27 0.98
79 80 7.777910 TCCATGGACCTCGATGTAATTTTTATT 59.222 33.333 11.44 0.00 31.27 1.40
80 81 7.228706 GTCCATGGACCTCGATGTAATTTTTAT 59.771 37.037 31.37 0.00 39.08 1.40
81 82 6.540914 GTCCATGGACCTCGATGTAATTTTTA 59.459 38.462 31.37 0.00 39.08 1.52
82 83 5.357032 GTCCATGGACCTCGATGTAATTTTT 59.643 40.000 31.37 0.00 39.08 1.94
83 84 4.881850 GTCCATGGACCTCGATGTAATTTT 59.118 41.667 31.37 0.00 39.08 1.82
84 85 4.451900 GTCCATGGACCTCGATGTAATTT 58.548 43.478 31.37 0.00 39.08 1.82
85 86 4.073293 GTCCATGGACCTCGATGTAATT 57.927 45.455 31.37 0.00 39.08 1.40
86 87 3.753294 GTCCATGGACCTCGATGTAAT 57.247 47.619 31.37 0.00 39.08 1.89
97 98 1.740296 CGTTCGGTGGTCCATGGAC 60.740 63.158 33.14 33.14 43.87 4.02
98 99 1.909287 TCGTTCGGTGGTCCATGGA 60.909 57.895 11.44 11.44 0.00 3.41
99 100 1.740296 GTCGTTCGGTGGTCCATGG 60.740 63.158 4.97 4.97 0.00 3.66
100 101 1.740296 GGTCGTTCGGTGGTCCATG 60.740 63.158 0.00 0.00 0.00 3.66
101 102 1.550130 ATGGTCGTTCGGTGGTCCAT 61.550 55.000 0.00 0.00 0.00 3.41
102 103 1.760479 AATGGTCGTTCGGTGGTCCA 61.760 55.000 0.00 0.00 0.00 4.02
103 104 1.004200 AATGGTCGTTCGGTGGTCC 60.004 57.895 0.00 0.00 0.00 4.46
104 105 1.908066 GCAATGGTCGTTCGGTGGTC 61.908 60.000 0.00 0.00 0.00 4.02
105 106 1.964373 GCAATGGTCGTTCGGTGGT 60.964 57.895 0.00 0.00 0.00 4.16
106 107 2.686816 GGCAATGGTCGTTCGGTGG 61.687 63.158 0.00 0.00 0.00 4.61
107 108 2.867472 GGCAATGGTCGTTCGGTG 59.133 61.111 0.00 0.00 0.00 4.94
108 109 2.740826 CGGCAATGGTCGTTCGGT 60.741 61.111 0.00 0.00 37.35 4.69
115 116 1.069227 GTTCTGACAACGGCAATGGTC 60.069 52.381 0.00 0.00 0.00 4.02
116 117 0.951558 GTTCTGACAACGGCAATGGT 59.048 50.000 0.00 0.00 0.00 3.55
117 118 0.110238 CGTTCTGACAACGGCAATGG 60.110 55.000 0.00 0.00 39.73 3.16
118 119 0.865111 TCGTTCTGACAACGGCAATG 59.135 50.000 7.01 0.00 43.24 2.82
119 120 1.148310 CTCGTTCTGACAACGGCAAT 58.852 50.000 7.01 0.00 43.24 3.56
120 121 1.495584 GCTCGTTCTGACAACGGCAA 61.496 55.000 7.01 0.00 43.24 4.52
121 122 1.954146 GCTCGTTCTGACAACGGCA 60.954 57.895 7.01 0.00 43.24 5.69
122 123 2.668280 GGCTCGTTCTGACAACGGC 61.668 63.158 7.01 8.82 43.24 5.68
123 124 2.372690 CGGCTCGTTCTGACAACGG 61.373 63.158 7.01 0.17 43.24 4.44
124 125 3.000080 GCGGCTCGTTCTGACAACG 62.000 63.158 0.39 0.39 44.29 4.10
125 126 2.668280 GGCGGCTCGTTCTGACAAC 61.668 63.158 0.00 0.00 0.00 3.32
126 127 2.357034 GGCGGCTCGTTCTGACAA 60.357 61.111 0.00 0.00 0.00 3.18
127 128 4.717629 CGGCGGCTCGTTCTGACA 62.718 66.667 7.61 0.00 0.00 3.58
128 129 4.415332 TCGGCGGCTCGTTCTGAC 62.415 66.667 7.21 0.00 0.00 3.51
129 130 4.415332 GTCGGCGGCTCGTTCTGA 62.415 66.667 3.23 0.00 0.00 3.27
143 144 4.265630 CATAACAGCGGCGCGTCG 62.266 66.667 31.31 31.31 0.00 5.12
144 145 4.575245 GCATAACAGCGGCGCGTC 62.575 66.667 27.59 3.30 0.00 5.19
147 148 4.536687 GTGGCATAACAGCGGCGC 62.537 66.667 26.86 26.86 34.64 6.53
148 149 2.398554 AAGTGGCATAACAGCGGCG 61.399 57.895 0.51 0.51 34.64 6.46
149 150 1.137404 CAAGTGGCATAACAGCGGC 59.863 57.895 0.00 0.00 34.64 6.53
150 151 0.447801 GACAAGTGGCATAACAGCGG 59.552 55.000 0.00 0.00 34.64 5.52
151 152 0.095245 CGACAAGTGGCATAACAGCG 59.905 55.000 0.00 0.00 34.64 5.18
152 153 0.179189 GCGACAAGTGGCATAACAGC 60.179 55.000 2.21 0.00 34.31 4.40
153 154 0.447801 GGCGACAAGTGGCATAACAG 59.552 55.000 9.36 0.00 35.94 3.16
154 155 0.250510 TGGCGACAAGTGGCATAACA 60.251 50.000 9.36 0.00 36.93 2.41
155 156 2.550487 TGGCGACAAGTGGCATAAC 58.450 52.632 9.36 0.00 36.93 1.89
167 168 4.120589 CCTAAAACTCCTCTAATGGCGAC 58.879 47.826 0.00 0.00 0.00 5.19
168 169 3.134081 CCCTAAAACTCCTCTAATGGCGA 59.866 47.826 0.00 0.00 0.00 5.54
169 170 3.118371 ACCCTAAAACTCCTCTAATGGCG 60.118 47.826 0.00 0.00 0.00 5.69
170 171 4.200092 CACCCTAAAACTCCTCTAATGGC 58.800 47.826 0.00 0.00 0.00 4.40
171 172 5.045869 TGACACCCTAAAACTCCTCTAATGG 60.046 44.000 0.00 0.00 0.00 3.16
172 173 6.049955 TGACACCCTAAAACTCCTCTAATG 57.950 41.667 0.00 0.00 0.00 1.90
173 174 6.697641 TTGACACCCTAAAACTCCTCTAAT 57.302 37.500 0.00 0.00 0.00 1.73
174 175 6.503560 TTTGACACCCTAAAACTCCTCTAA 57.496 37.500 0.00 0.00 0.00 2.10
175 176 6.503560 TTTTGACACCCTAAAACTCCTCTA 57.496 37.500 0.00 0.00 0.00 2.43
176 177 5.382664 TTTTGACACCCTAAAACTCCTCT 57.617 39.130 0.00 0.00 0.00 3.69
177 178 5.535030 ACATTTTGACACCCTAAAACTCCTC 59.465 40.000 0.00 0.00 0.00 3.71
178 179 5.301805 CACATTTTGACACCCTAAAACTCCT 59.698 40.000 0.00 0.00 0.00 3.69
179 180 5.508994 CCACATTTTGACACCCTAAAACTCC 60.509 44.000 0.00 0.00 0.00 3.85
180 181 5.528870 CCACATTTTGACACCCTAAAACTC 58.471 41.667 0.00 0.00 0.00 3.01
181 182 4.202212 GCCACATTTTGACACCCTAAAACT 60.202 41.667 0.00 0.00 0.00 2.66
182 183 4.055360 GCCACATTTTGACACCCTAAAAC 58.945 43.478 0.00 0.00 0.00 2.43
183 184 3.243569 CGCCACATTTTGACACCCTAAAA 60.244 43.478 0.00 0.00 0.00 1.52
184 185 2.294791 CGCCACATTTTGACACCCTAAA 59.705 45.455 0.00 0.00 0.00 1.85
185 186 1.883275 CGCCACATTTTGACACCCTAA 59.117 47.619 0.00 0.00 0.00 2.69
186 187 1.529226 CGCCACATTTTGACACCCTA 58.471 50.000 0.00 0.00 0.00 3.53
187 188 1.178534 CCGCCACATTTTGACACCCT 61.179 55.000 0.00 0.00 0.00 4.34
188 189 1.175983 TCCGCCACATTTTGACACCC 61.176 55.000 0.00 0.00 0.00 4.61
189 190 0.240945 CTCCGCCACATTTTGACACC 59.759 55.000 0.00 0.00 0.00 4.16
190 191 0.387239 GCTCCGCCACATTTTGACAC 60.387 55.000 0.00 0.00 0.00 3.67
191 192 1.851021 CGCTCCGCCACATTTTGACA 61.851 55.000 0.00 0.00 0.00 3.58
192 193 1.154225 CGCTCCGCCACATTTTGAC 60.154 57.895 0.00 0.00 0.00 3.18
193 194 0.320858 TACGCTCCGCCACATTTTGA 60.321 50.000 0.00 0.00 0.00 2.69
194 195 0.519519 TTACGCTCCGCCACATTTTG 59.480 50.000 0.00 0.00 0.00 2.44
195 196 1.068816 GTTTACGCTCCGCCACATTTT 60.069 47.619 0.00 0.00 0.00 1.82
196 197 0.519961 GTTTACGCTCCGCCACATTT 59.480 50.000 0.00 0.00 0.00 2.32
197 198 1.303091 GGTTTACGCTCCGCCACATT 61.303 55.000 0.00 0.00 0.00 2.71
198 199 1.743995 GGTTTACGCTCCGCCACAT 60.744 57.895 0.00 0.00 0.00 3.21
199 200 2.357760 GGTTTACGCTCCGCCACA 60.358 61.111 0.00 0.00 0.00 4.17
200 201 1.508808 TTTGGTTTACGCTCCGCCAC 61.509 55.000 0.00 0.00 0.00 5.01
201 202 0.606944 ATTTGGTTTACGCTCCGCCA 60.607 50.000 0.00 0.00 0.00 5.69
202 203 0.524414 AATTTGGTTTACGCTCCGCC 59.476 50.000 0.00 0.00 0.00 6.13
203 204 1.198178 TGAATTTGGTTTACGCTCCGC 59.802 47.619 0.00 0.00 0.00 5.54
204 205 3.058501 ACTTGAATTTGGTTTACGCTCCG 60.059 43.478 0.00 0.00 0.00 4.63
205 206 4.226761 CACTTGAATTTGGTTTACGCTCC 58.773 43.478 0.00 0.00 0.00 4.70
206 207 4.675114 CACACTTGAATTTGGTTTACGCTC 59.325 41.667 0.00 0.00 0.00 5.03
207 208 4.097286 ACACACTTGAATTTGGTTTACGCT 59.903 37.500 0.00 0.00 0.00 5.07
208 209 4.356289 ACACACTTGAATTTGGTTTACGC 58.644 39.130 0.00 0.00 0.00 4.42
209 210 5.574082 TGACACACTTGAATTTGGTTTACG 58.426 37.500 0.00 0.00 0.00 3.18
210 211 7.820044 TTTGACACACTTGAATTTGGTTTAC 57.180 32.000 0.00 0.00 0.00 2.01
211 212 8.877779 CATTTTGACACACTTGAATTTGGTTTA 58.122 29.630 0.00 0.00 0.00 2.01
212 213 7.390162 ACATTTTGACACACTTGAATTTGGTTT 59.610 29.630 0.00 0.00 0.00 3.27
213 214 6.878389 ACATTTTGACACACTTGAATTTGGTT 59.122 30.769 0.00 0.00 0.00 3.67
214 215 6.313411 CACATTTTGACACACTTGAATTTGGT 59.687 34.615 0.00 0.00 0.00 3.67
215 216 6.238157 CCACATTTTGACACACTTGAATTTGG 60.238 38.462 0.00 0.00 0.00 3.28
216 217 6.238157 CCCACATTTTGACACACTTGAATTTG 60.238 38.462 0.00 0.00 0.00 2.32
217 218 5.816777 CCCACATTTTGACACACTTGAATTT 59.183 36.000 0.00 0.00 0.00 1.82
218 219 5.128499 TCCCACATTTTGACACACTTGAATT 59.872 36.000 0.00 0.00 0.00 2.17
219 220 4.648762 TCCCACATTTTGACACACTTGAAT 59.351 37.500 0.00 0.00 0.00 2.57
220 221 4.019858 TCCCACATTTTGACACACTTGAA 58.980 39.130 0.00 0.00 0.00 2.69
221 222 3.625853 TCCCACATTTTGACACACTTGA 58.374 40.909 0.00 0.00 0.00 3.02
222 223 3.796504 GCTCCCACATTTTGACACACTTG 60.797 47.826 0.00 0.00 0.00 3.16
223 224 2.362077 GCTCCCACATTTTGACACACTT 59.638 45.455 0.00 0.00 0.00 3.16
224 225 1.956477 GCTCCCACATTTTGACACACT 59.044 47.619 0.00 0.00 0.00 3.55
225 226 1.680735 TGCTCCCACATTTTGACACAC 59.319 47.619 0.00 0.00 0.00 3.82
226 227 2.064434 TGCTCCCACATTTTGACACA 57.936 45.000 0.00 0.00 0.00 3.72
227 228 2.353011 CCATGCTCCCACATTTTGACAC 60.353 50.000 0.00 0.00 0.00 3.67
228 229 1.894466 CCATGCTCCCACATTTTGACA 59.106 47.619 0.00 0.00 0.00 3.58
229 230 1.404583 GCCATGCTCCCACATTTTGAC 60.405 52.381 0.00 0.00 0.00 3.18
230 231 0.896923 GCCATGCTCCCACATTTTGA 59.103 50.000 0.00 0.00 0.00 2.69
231 232 0.108041 GGCCATGCTCCCACATTTTG 60.108 55.000 0.00 0.00 0.00 2.44
232 233 0.252375 AGGCCATGCTCCCACATTTT 60.252 50.000 5.01 0.00 0.00 1.82
233 234 0.630673 TAGGCCATGCTCCCACATTT 59.369 50.000 5.01 0.00 0.00 2.32
234 235 0.855598 ATAGGCCATGCTCCCACATT 59.144 50.000 5.01 0.00 0.00 2.71
235 236 1.746157 TATAGGCCATGCTCCCACAT 58.254 50.000 5.01 0.00 0.00 3.21
236 237 1.517238 TTATAGGCCATGCTCCCACA 58.483 50.000 5.01 0.00 0.00 4.17
237 238 2.656947 TTTATAGGCCATGCTCCCAC 57.343 50.000 5.01 0.00 0.00 4.61
238 239 3.052944 AGTTTTTATAGGCCATGCTCCCA 60.053 43.478 5.01 0.00 0.00 4.37
239 240 3.566351 AGTTTTTATAGGCCATGCTCCC 58.434 45.455 5.01 0.00 0.00 4.30
240 241 5.241728 CCTAAGTTTTTATAGGCCATGCTCC 59.758 44.000 5.01 0.00 32.82 4.70
241 242 5.241728 CCCTAAGTTTTTATAGGCCATGCTC 59.758 44.000 5.01 0.00 37.87 4.26
242 243 5.140454 CCCTAAGTTTTTATAGGCCATGCT 58.860 41.667 5.01 0.00 37.87 3.79
243 244 4.893524 ACCCTAAGTTTTTATAGGCCATGC 59.106 41.667 5.01 0.00 37.87 4.06
244 245 5.301805 CCACCCTAAGTTTTTATAGGCCATG 59.698 44.000 5.01 0.00 37.87 3.66
245 246 5.043657 ACCACCCTAAGTTTTTATAGGCCAT 60.044 40.000 5.01 0.00 37.87 4.40
246 247 4.292836 ACCACCCTAAGTTTTTATAGGCCA 59.707 41.667 5.01 0.00 37.87 5.36
247 248 4.863548 ACCACCCTAAGTTTTTATAGGCC 58.136 43.478 0.00 0.00 37.87 5.19
248 249 5.503002 TGACCACCCTAAGTTTTTATAGGC 58.497 41.667 0.00 0.00 37.87 3.93
249 250 7.668469 ACTTTGACCACCCTAAGTTTTTATAGG 59.332 37.037 0.00 0.00 38.74 2.57
250 251 8.512138 CACTTTGACCACCCTAAGTTTTTATAG 58.488 37.037 0.00 0.00 0.00 1.31
251 252 7.449086 CCACTTTGACCACCCTAAGTTTTTATA 59.551 37.037 0.00 0.00 0.00 0.98
252 253 6.266786 CCACTTTGACCACCCTAAGTTTTTAT 59.733 38.462 0.00 0.00 0.00 1.40
253 254 5.595133 CCACTTTGACCACCCTAAGTTTTTA 59.405 40.000 0.00 0.00 0.00 1.52
254 255 4.404394 CCACTTTGACCACCCTAAGTTTTT 59.596 41.667 0.00 0.00 0.00 1.94
255 256 3.958147 CCACTTTGACCACCCTAAGTTTT 59.042 43.478 0.00 0.00 0.00 2.43
256 257 3.562182 CCACTTTGACCACCCTAAGTTT 58.438 45.455 0.00 0.00 0.00 2.66
257 258 2.158519 CCCACTTTGACCACCCTAAGTT 60.159 50.000 0.00 0.00 0.00 2.66
258 259 1.423921 CCCACTTTGACCACCCTAAGT 59.576 52.381 0.00 0.00 0.00 2.24
259 260 1.886655 GCCCACTTTGACCACCCTAAG 60.887 57.143 0.00 0.00 0.00 2.18
260 261 0.111639 GCCCACTTTGACCACCCTAA 59.888 55.000 0.00 0.00 0.00 2.69
261 262 1.765074 GCCCACTTTGACCACCCTA 59.235 57.895 0.00 0.00 0.00 3.53
262 263 2.520968 GCCCACTTTGACCACCCT 59.479 61.111 0.00 0.00 0.00 4.34
263 264 2.983592 CGCCCACTTTGACCACCC 60.984 66.667 0.00 0.00 0.00 4.61
264 265 2.969300 TTCCGCCCACTTTGACCACC 62.969 60.000 0.00 0.00 0.00 4.61
265 266 1.515521 CTTCCGCCCACTTTGACCAC 61.516 60.000 0.00 0.00 0.00 4.16
266 267 1.228124 CTTCCGCCCACTTTGACCA 60.228 57.895 0.00 0.00 0.00 4.02
267 268 0.322546 ATCTTCCGCCCACTTTGACC 60.323 55.000 0.00 0.00 0.00 4.02
268 269 1.534729 AATCTTCCGCCCACTTTGAC 58.465 50.000 0.00 0.00 0.00 3.18
269 270 3.078837 GTTAATCTTCCGCCCACTTTGA 58.921 45.455 0.00 0.00 0.00 2.69
270 271 2.817258 TGTTAATCTTCCGCCCACTTTG 59.183 45.455 0.00 0.00 0.00 2.77
271 272 2.817844 GTGTTAATCTTCCGCCCACTTT 59.182 45.455 0.00 0.00 0.00 2.66
272 273 2.224670 TGTGTTAATCTTCCGCCCACTT 60.225 45.455 0.00 0.00 0.00 3.16
273 274 1.349688 TGTGTTAATCTTCCGCCCACT 59.650 47.619 0.00 0.00 0.00 4.00
274 275 1.816074 TGTGTTAATCTTCCGCCCAC 58.184 50.000 0.00 0.00 0.00 4.61
275 276 2.799126 ATGTGTTAATCTTCCGCCCA 57.201 45.000 0.00 0.00 0.00 5.36
276 277 3.442273 TGAAATGTGTTAATCTTCCGCCC 59.558 43.478 0.00 0.00 0.00 6.13
277 278 4.156008 AGTGAAATGTGTTAATCTTCCGCC 59.844 41.667 0.00 0.00 0.00 6.13
278 279 5.296813 AGTGAAATGTGTTAATCTTCCGC 57.703 39.130 0.00 0.00 0.00 5.54
279 280 6.072728 TCCAAGTGAAATGTGTTAATCTTCCG 60.073 38.462 0.00 0.00 0.00 4.30
280 281 7.214467 TCCAAGTGAAATGTGTTAATCTTCC 57.786 36.000 0.00 0.00 0.00 3.46
281 282 7.809806 CCTTCCAAGTGAAATGTGTTAATCTTC 59.190 37.037 0.00 0.00 31.06 2.87
282 283 7.255942 CCCTTCCAAGTGAAATGTGTTAATCTT 60.256 37.037 0.00 0.00 31.06 2.40
283 284 6.209391 CCCTTCCAAGTGAAATGTGTTAATCT 59.791 38.462 0.00 0.00 31.06 2.40
284 285 6.389906 CCCTTCCAAGTGAAATGTGTTAATC 58.610 40.000 0.00 0.00 31.06 1.75
285 286 5.245977 CCCCTTCCAAGTGAAATGTGTTAAT 59.754 40.000 0.00 0.00 31.06 1.40
286 287 4.586841 CCCCTTCCAAGTGAAATGTGTTAA 59.413 41.667 0.00 0.00 31.06 2.01
287 288 4.148838 CCCCTTCCAAGTGAAATGTGTTA 58.851 43.478 0.00 0.00 31.06 2.41
288 289 2.965147 CCCCTTCCAAGTGAAATGTGTT 59.035 45.455 0.00 0.00 31.06 3.32
289 290 2.091333 ACCCCTTCCAAGTGAAATGTGT 60.091 45.455 0.00 0.00 31.06 3.72
290 291 2.597455 ACCCCTTCCAAGTGAAATGTG 58.403 47.619 0.00 0.00 31.06 3.21
291 292 3.499745 GGTACCCCTTCCAAGTGAAATGT 60.500 47.826 0.00 0.00 31.06 2.71
292 293 3.089284 GGTACCCCTTCCAAGTGAAATG 58.911 50.000 0.00 0.00 31.06 2.32
293 294 2.290705 CGGTACCCCTTCCAAGTGAAAT 60.291 50.000 6.25 0.00 31.06 2.17
294 295 1.072648 CGGTACCCCTTCCAAGTGAAA 59.927 52.381 6.25 0.00 31.06 2.69
295 296 0.688487 CGGTACCCCTTCCAAGTGAA 59.312 55.000 6.25 0.00 0.00 3.18
296 297 1.196104 CCGGTACCCCTTCCAAGTGA 61.196 60.000 6.25 0.00 0.00 3.41
297 298 1.298667 CCGGTACCCCTTCCAAGTG 59.701 63.158 6.25 0.00 0.00 3.16
298 299 1.151965 ACCGGTACCCCTTCCAAGT 60.152 57.895 4.49 0.00 0.00 3.16
299 300 1.298667 CACCGGTACCCCTTCCAAG 59.701 63.158 6.87 0.00 0.00 3.61
300 301 2.897762 GCACCGGTACCCCTTCCAA 61.898 63.158 6.87 0.00 0.00 3.53
301 302 3.324108 GCACCGGTACCCCTTCCA 61.324 66.667 6.87 0.00 0.00 3.53
302 303 4.105553 GGCACCGGTACCCCTTCC 62.106 72.222 13.46 0.00 0.00 3.46
303 304 4.105553 GGGCACCGGTACCCCTTC 62.106 72.222 30.51 6.86 40.86 3.46
317 318 3.728373 ATCAGAACCACCCCGGGC 61.728 66.667 17.73 0.00 40.22 6.13
318 319 1.635817 ATCATCAGAACCACCCCGGG 61.636 60.000 15.80 15.80 40.22 5.73
319 320 0.464373 CATCATCAGAACCACCCCGG 60.464 60.000 0.00 0.00 42.50 5.73
320 321 1.097547 GCATCATCAGAACCACCCCG 61.098 60.000 0.00 0.00 0.00 5.73
321 322 0.257039 AGCATCATCAGAACCACCCC 59.743 55.000 0.00 0.00 0.00 4.95
322 323 1.673168 GAGCATCATCAGAACCACCC 58.327 55.000 0.00 0.00 33.17 4.61
323 324 1.065199 TGGAGCATCATCAGAACCACC 60.065 52.381 0.00 0.00 36.25 4.61
324 325 2.012673 GTGGAGCATCATCAGAACCAC 58.987 52.381 0.00 0.00 39.20 4.16
325 326 1.065199 GGTGGAGCATCATCAGAACCA 60.065 52.381 0.00 0.00 36.25 3.67
326 327 1.065199 TGGTGGAGCATCATCAGAACC 60.065 52.381 0.00 0.00 36.25 3.62
327 328 2.012673 GTGGTGGAGCATCATCAGAAC 58.987 52.381 0.00 0.00 36.25 3.01
328 329 1.911357 AGTGGTGGAGCATCATCAGAA 59.089 47.619 0.00 0.00 36.25 3.02
329 330 1.208776 CAGTGGTGGAGCATCATCAGA 59.791 52.381 0.00 0.00 36.25 3.27
330 331 1.664873 CAGTGGTGGAGCATCATCAG 58.335 55.000 0.00 0.00 36.25 2.90
331 332 3.867549 CAGTGGTGGAGCATCATCA 57.132 52.632 0.00 0.00 36.25 3.07
344 345 3.361786 CCCAATTAAAGGTACCCAGTGG 58.638 50.000 8.74 9.19 37.80 4.00
345 346 3.010808 TCCCCAATTAAAGGTACCCAGTG 59.989 47.826 8.74 0.00 0.00 3.66
346 347 3.270812 TCCCCAATTAAAGGTACCCAGT 58.729 45.455 8.74 0.00 0.00 4.00
347 348 4.536295 ATCCCCAATTAAAGGTACCCAG 57.464 45.455 8.74 0.00 0.00 4.45
348 349 4.976870 AATCCCCAATTAAAGGTACCCA 57.023 40.909 8.74 0.00 0.00 4.51
349 350 4.652421 GGAAATCCCCAATTAAAGGTACCC 59.348 45.833 8.74 0.00 0.00 3.69
350 351 5.525484 AGGAAATCCCCAATTAAAGGTACC 58.475 41.667 2.73 2.73 36.42 3.34
351 352 7.490657 AAAGGAAATCCCCAATTAAAGGTAC 57.509 36.000 0.00 0.00 36.42 3.34
352 353 9.791781 ATAAAAGGAAATCCCCAATTAAAGGTA 57.208 29.630 0.00 0.00 36.42 3.08
353 354 8.694171 ATAAAAGGAAATCCCCAATTAAAGGT 57.306 30.769 0.00 0.00 36.42 3.50
354 355 9.973661 AAATAAAAGGAAATCCCCAATTAAAGG 57.026 29.630 0.00 0.00 36.42 3.11
359 360 9.116080 AGAGAAAATAAAAGGAAATCCCCAATT 57.884 29.630 0.00 0.00 36.42 2.32
360 361 8.685257 AGAGAAAATAAAAGGAAATCCCCAAT 57.315 30.769 0.00 0.00 36.42 3.16
361 362 8.504811 AAGAGAAAATAAAAGGAAATCCCCAA 57.495 30.769 0.00 0.00 36.42 4.12
362 363 9.608718 TTAAGAGAAAATAAAAGGAAATCCCCA 57.391 29.630 0.00 0.00 36.42 4.96
402 403 4.322057 AAGGACAGCCCAAATTAGATGT 57.678 40.909 0.00 0.00 37.41 3.06
413 414 1.315981 GGCAGCTTAAAGGACAGCCC 61.316 60.000 0.00 0.00 36.62 5.19
416 417 1.133790 GCATGGCAGCTTAAAGGACAG 59.866 52.381 0.00 0.00 0.00 3.51
423 424 2.368439 CCAACTAGCATGGCAGCTTAA 58.632 47.619 14.91 0.38 43.70 1.85
448 449 3.300009 GTTCACAGAAACGCAAATGGAG 58.700 45.455 0.00 0.00 0.00 3.86
462 463 1.442769 CAGGGAATGTCCGTTCACAG 58.557 55.000 4.44 0.00 37.43 3.66
463 464 0.036164 CCAGGGAATGTCCGTTCACA 59.964 55.000 4.44 0.00 37.43 3.58
464 465 0.323629 TCCAGGGAATGTCCGTTCAC 59.676 55.000 1.99 0.00 37.43 3.18
465 466 1.285280 ATCCAGGGAATGTCCGTTCA 58.715 50.000 0.00 0.00 37.43 3.18
466 467 2.224305 CCTATCCAGGGAATGTCCGTTC 60.224 54.545 0.00 0.00 37.43 3.95
467 468 1.768870 CCTATCCAGGGAATGTCCGTT 59.231 52.381 0.00 0.00 37.43 4.44
468 469 1.424638 CCTATCCAGGGAATGTCCGT 58.575 55.000 0.00 0.00 37.43 4.69
469 470 0.035458 GCCTATCCAGGGAATGTCCG 59.965 60.000 0.00 0.00 42.88 4.79
470 471 0.402121 GGCCTATCCAGGGAATGTCC 59.598 60.000 0.00 0.00 42.88 4.02
471 472 1.439543 AGGCCTATCCAGGGAATGTC 58.560 55.000 1.29 0.00 42.88 3.06
472 473 1.912862 AAGGCCTATCCAGGGAATGT 58.087 50.000 5.16 0.00 42.88 2.71
473 474 2.982488 AGTAAGGCCTATCCAGGGAATG 59.018 50.000 5.16 0.00 42.88 2.67
474 475 3.368921 AGTAAGGCCTATCCAGGGAAT 57.631 47.619 5.16 0.00 42.88 3.01
475 476 2.889522 AGTAAGGCCTATCCAGGGAA 57.110 50.000 5.16 0.00 42.88 3.97
476 477 2.889522 AAGTAAGGCCTATCCAGGGA 57.110 50.000 5.16 0.00 42.88 4.20
477 478 3.555966 CAAAAGTAAGGCCTATCCAGGG 58.444 50.000 5.16 0.00 42.88 4.45
478 479 3.555966 CCAAAAGTAAGGCCTATCCAGG 58.444 50.000 5.16 0.00 45.77 4.45
531 532 1.742761 ATTGAGCCCACGAATCACAG 58.257 50.000 0.00 0.00 0.00 3.66
938 954 4.174762 CGTAACTACAGCTCCTTTTCTCC 58.825 47.826 0.00 0.00 0.00 3.71
956 974 4.559153 GAGGCTAACCACACTTAACGTAA 58.441 43.478 0.00 0.00 39.06 3.18
987 1005 3.809279 GCATCACCATGATCGATGTACAA 59.191 43.478 0.54 0.00 39.00 2.41
1042 1060 4.889112 CAGCATGAGGGCGGCCAT 62.889 66.667 31.59 15.24 39.69 4.40
1057 1075 2.753043 GGTGGCAGCCATGACCAG 60.753 66.667 19.75 0.00 35.28 4.00
1349 1384 4.226095 TTGCAAAAGGCCCCGGGA 62.226 61.111 26.32 0.00 43.89 5.14
1394 1429 7.440255 ACTTCAACGGCGCTTATAATTAACTAT 59.560 33.333 6.90 0.00 0.00 2.12
1431 1476 7.670979 TGCTTATATTATTGGCATCTCCATGTT 59.329 33.333 0.00 0.00 46.04 2.71
1433 1478 7.634671 TGCTTATATTATTGGCATCTCCATG 57.365 36.000 0.00 0.00 46.04 3.66
1522 1570 6.037500 ACGAACCAATGAGACATACAATGATG 59.962 38.462 0.00 0.00 0.00 3.07
1641 1711 4.520874 ACATACTCATGTCCATCTAGTCGG 59.479 45.833 0.00 0.00 41.75 4.79
1676 1746 4.962155 TGGGTGAAATTAAAAACGCCAAT 58.038 34.783 0.00 0.00 35.01 3.16
1690 1760 3.565307 AGAGACTTGCATTTGGGTGAAA 58.435 40.909 0.00 0.00 0.00 2.69
1817 1893 2.128771 TGGATTTTACTGCTCCTGGC 57.871 50.000 0.00 0.00 42.22 4.85
1877 1953 8.147058 ACAATAAACATTTGTGAAAGTATGGCA 58.853 29.630 0.00 0.00 36.02 4.92
1878 1954 8.532977 ACAATAAACATTTGTGAAAGTATGGC 57.467 30.769 0.00 0.00 36.02 4.40
1895 1981 7.574496 TCTCAAATTTTGCATGCACAATAAAC 58.426 30.769 27.48 0.00 0.00 2.01
1899 1985 5.527951 TGTTCTCAAATTTTGCATGCACAAT 59.472 32.000 23.16 23.16 0.00 2.71
1911 1997 6.966066 CGGTTTTGCAAAATGTTCTCAAATTT 59.034 30.769 26.24 0.00 0.00 1.82
1986 2072 9.158233 AGATTTCAATAAATGTTCATGGCTTTG 57.842 29.630 0.00 0.00 35.41 2.77
2061 2150 5.355071 CCTGCATGCTTGATAGTTAGAACAA 59.645 40.000 20.33 0.00 0.00 2.83
2062 2151 4.877823 CCTGCATGCTTGATAGTTAGAACA 59.122 41.667 20.33 0.00 0.00 3.18
2063 2152 4.878397 ACCTGCATGCTTGATAGTTAGAAC 59.122 41.667 20.33 0.00 0.00 3.01
2064 2153 5.102953 ACCTGCATGCTTGATAGTTAGAA 57.897 39.130 20.33 0.00 0.00 2.10
2065 2154 4.162131 TGACCTGCATGCTTGATAGTTAGA 59.838 41.667 20.33 0.00 0.00 2.10
2092 2181 2.118679 GCTGGAAAATGGGGCCTATTT 58.881 47.619 20.85 20.85 0.00 1.40
2109 2198 3.562505 GCAAGTGAAGATCTTTGTGCTG 58.437 45.455 9.87 5.44 0.00 4.41
2139 2228 9.790344 GAACTGAGGGAGTAGTATATAGTACAA 57.210 37.037 23.58 6.73 35.15 2.41
2151 2240 9.369672 ACTTATATTTAGGAACTGAGGGAGTAG 57.630 37.037 0.00 0.00 41.52 2.57
2152 2241 9.364653 GACTTATATTTAGGAACTGAGGGAGTA 57.635 37.037 0.00 0.00 41.52 2.59
2153 2242 8.068733 AGACTTATATTTAGGAACTGAGGGAGT 58.931 37.037 0.00 0.00 41.52 3.85
2154 2243 8.485578 AGACTTATATTTAGGAACTGAGGGAG 57.514 38.462 0.00 0.00 41.52 4.30
2155 2244 8.855804 AAGACTTATATTTAGGAACTGAGGGA 57.144 34.615 0.00 0.00 41.52 4.20
2156 2245 9.907229 AAAAGACTTATATTTAGGAACTGAGGG 57.093 33.333 0.00 0.00 41.52 4.30
2180 2269 9.535878 GTGGTTGTCCATTTAAAATCACTAAAA 57.464 29.630 0.00 0.00 46.20 1.52
2181 2270 8.696374 TGTGGTTGTCCATTTAAAATCACTAAA 58.304 29.630 0.00 0.00 46.20 1.85
2182 2271 8.239038 TGTGGTTGTCCATTTAAAATCACTAA 57.761 30.769 0.00 0.00 46.20 2.24
2183 2272 7.825331 TGTGGTTGTCCATTTAAAATCACTA 57.175 32.000 0.00 0.00 46.20 2.74
2184 2273 6.723298 TGTGGTTGTCCATTTAAAATCACT 57.277 33.333 0.00 0.00 46.20 3.41
2185 2274 7.272515 CGTATGTGGTTGTCCATTTAAAATCAC 59.727 37.037 0.00 0.00 46.20 3.06
2186 2275 7.309177 CGTATGTGGTTGTCCATTTAAAATCA 58.691 34.615 0.00 0.00 46.20 2.57
2187 2276 6.750039 CCGTATGTGGTTGTCCATTTAAAATC 59.250 38.462 0.00 0.00 46.20 2.17
2188 2277 6.434652 TCCGTATGTGGTTGTCCATTTAAAAT 59.565 34.615 0.00 0.00 46.20 1.82
2189 2278 5.768662 TCCGTATGTGGTTGTCCATTTAAAA 59.231 36.000 0.00 0.00 46.20 1.52
2190 2279 5.314529 TCCGTATGTGGTTGTCCATTTAAA 58.685 37.500 0.00 0.00 46.20 1.52
2191 2280 4.907809 TCCGTATGTGGTTGTCCATTTAA 58.092 39.130 0.00 0.00 46.20 1.52
2192 2281 4.554960 TCCGTATGTGGTTGTCCATTTA 57.445 40.909 0.00 0.00 46.20 1.40
2193 2282 3.426787 TCCGTATGTGGTTGTCCATTT 57.573 42.857 0.00 0.00 46.20 2.32
2194 2283 3.278574 CATCCGTATGTGGTTGTCCATT 58.721 45.455 0.00 0.00 46.20 3.16
2195 2284 2.238646 ACATCCGTATGTGGTTGTCCAT 59.761 45.455 0.00 0.00 44.79 3.41
2196 2285 1.626321 ACATCCGTATGTGGTTGTCCA 59.374 47.619 0.00 0.00 44.79 4.02
2197 2286 2.396590 ACATCCGTATGTGGTTGTCC 57.603 50.000 0.00 0.00 44.79 4.02
2198 2287 7.754027 GTCTATATACATCCGTATGTGGTTGTC 59.246 40.741 3.56 0.00 45.99 3.18
2199 2288 7.231925 TGTCTATATACATCCGTATGTGGTTGT 59.768 37.037 3.56 6.89 45.99 3.32
2200 2289 7.599171 TGTCTATATACATCCGTATGTGGTTG 58.401 38.462 3.56 0.00 45.99 3.77
2201 2290 7.770366 TGTCTATATACATCCGTATGTGGTT 57.230 36.000 3.56 0.00 45.99 3.67
2202 2291 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
2223 2312 9.851686 TGAGCAAATCTATACTCCAAAATATGT 57.148 29.630 0.00 0.00 0.00 2.29
2228 2317 9.859427 CAAAATGAGCAAATCTATACTCCAAAA 57.141 29.630 0.00 0.00 0.00 2.44
2229 2318 7.975616 GCAAAATGAGCAAATCTATACTCCAAA 59.024 33.333 0.00 0.00 0.00 3.28
2230 2319 7.340232 AGCAAAATGAGCAAATCTATACTCCAA 59.660 33.333 0.00 0.00 0.00 3.53
2231 2320 6.830324 AGCAAAATGAGCAAATCTATACTCCA 59.170 34.615 0.00 0.00 0.00 3.86
2232 2321 7.269477 AGCAAAATGAGCAAATCTATACTCC 57.731 36.000 0.00 0.00 0.00 3.85
2233 2322 7.358830 GGAGCAAAATGAGCAAATCTATACTC 58.641 38.462 0.00 0.00 0.00 2.59
2234 2323 6.017605 CGGAGCAAAATGAGCAAATCTATACT 60.018 38.462 0.00 0.00 0.00 2.12
2235 2324 6.138761 CGGAGCAAAATGAGCAAATCTATAC 58.861 40.000 0.00 0.00 0.00 1.47
2236 2325 5.822519 ACGGAGCAAAATGAGCAAATCTATA 59.177 36.000 0.00 0.00 0.00 1.31
2237 2326 4.641989 ACGGAGCAAAATGAGCAAATCTAT 59.358 37.500 0.00 0.00 0.00 1.98
2238 2327 4.009675 ACGGAGCAAAATGAGCAAATCTA 58.990 39.130 0.00 0.00 0.00 1.98
2239 2328 2.821969 ACGGAGCAAAATGAGCAAATCT 59.178 40.909 0.00 0.00 0.00 2.40
2240 2329 3.221964 ACGGAGCAAAATGAGCAAATC 57.778 42.857 0.00 0.00 0.00 2.17
2241 2330 4.158394 ACATACGGAGCAAAATGAGCAAAT 59.842 37.500 0.00 0.00 0.00 2.32
2242 2331 3.505680 ACATACGGAGCAAAATGAGCAAA 59.494 39.130 0.00 0.00 0.00 3.68
2243 2332 3.081061 ACATACGGAGCAAAATGAGCAA 58.919 40.909 0.00 0.00 0.00 3.91
2244 2333 2.710377 ACATACGGAGCAAAATGAGCA 58.290 42.857 0.00 0.00 0.00 4.26
2245 2334 3.871594 ACTACATACGGAGCAAAATGAGC 59.128 43.478 0.00 0.00 0.00 4.26
2246 2335 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
2247 2336 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2248 2337 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
2249 2338 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
2250 2339 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
2251 2340 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
2252 2341 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
2253 2342 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
2254 2343 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
2255 2344 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
2256 2345 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
2257 2346 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
2258 2347 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
2259 2348 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
2261 2350 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
2262 2351 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
2263 2352 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
2264 2353 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
2265 2354 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
2266 2355 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
2267 2356 7.657761 GGTCTTTCTAGAGATTTCAACAAGTGA 59.342 37.037 0.00 0.00 0.00 3.41
2268 2357 7.659390 AGGTCTTTCTAGAGATTTCAACAAGTG 59.341 37.037 0.00 0.00 0.00 3.16
2269 2358 7.740805 AGGTCTTTCTAGAGATTTCAACAAGT 58.259 34.615 0.00 0.00 0.00 3.16
2270 2359 9.883142 ATAGGTCTTTCTAGAGATTTCAACAAG 57.117 33.333 0.00 0.00 0.00 3.16
2293 2382 7.835181 AGATACTCCCTCCGTTCCTAAATATAG 59.165 40.741 0.00 0.00 0.00 1.31
2294 2383 7.614583 CAGATACTCCCTCCGTTCCTAAATATA 59.385 40.741 0.00 0.00 0.00 0.86
2295 2384 6.437793 CAGATACTCCCTCCGTTCCTAAATAT 59.562 42.308 0.00 0.00 0.00 1.28
2296 2385 5.773680 CAGATACTCCCTCCGTTCCTAAATA 59.226 44.000 0.00 0.00 0.00 1.40
2297 2386 4.589374 CAGATACTCCCTCCGTTCCTAAAT 59.411 45.833 0.00 0.00 0.00 1.40
2298 2387 3.958798 CAGATACTCCCTCCGTTCCTAAA 59.041 47.826 0.00 0.00 0.00 1.85
2299 2388 3.203710 TCAGATACTCCCTCCGTTCCTAA 59.796 47.826 0.00 0.00 0.00 2.69
2300 2389 2.781757 TCAGATACTCCCTCCGTTCCTA 59.218 50.000 0.00 0.00 0.00 2.94
2301 2390 1.569548 TCAGATACTCCCTCCGTTCCT 59.430 52.381 0.00 0.00 0.00 3.36
2302 2391 1.682323 GTCAGATACTCCCTCCGTTCC 59.318 57.143 0.00 0.00 0.00 3.62
2303 2392 2.099427 GTGTCAGATACTCCCTCCGTTC 59.901 54.545 0.00 0.00 0.00 3.95
2304 2393 2.100989 GTGTCAGATACTCCCTCCGTT 58.899 52.381 0.00 0.00 0.00 4.44
2305 2394 1.765230 GTGTCAGATACTCCCTCCGT 58.235 55.000 0.00 0.00 0.00 4.69
2306 2395 0.663688 CGTGTCAGATACTCCCTCCG 59.336 60.000 0.00 0.00 0.00 4.63
2307 2396 1.033574 CCGTGTCAGATACTCCCTCC 58.966 60.000 0.00 0.00 0.00 4.30
2308 2397 1.033574 CCCGTGTCAGATACTCCCTC 58.966 60.000 0.00 0.00 0.00 4.30
2309 2398 0.629596 TCCCGTGTCAGATACTCCCT 59.370 55.000 0.00 0.00 0.00 4.20
2310 2399 1.705873 ATCCCGTGTCAGATACTCCC 58.294 55.000 0.00 0.00 0.00 4.30
2311 2400 3.220110 TGTATCCCGTGTCAGATACTCC 58.780 50.000 10.52 0.00 43.42 3.85
2312 2401 4.135306 TCTGTATCCCGTGTCAGATACTC 58.865 47.826 10.52 0.00 43.42 2.59
2313 2402 4.166246 TCTGTATCCCGTGTCAGATACT 57.834 45.455 10.52 0.00 43.42 2.12
2314 2403 4.261656 CCTTCTGTATCCCGTGTCAGATAC 60.262 50.000 3.73 3.73 43.36 2.24
2315 2404 3.889538 CCTTCTGTATCCCGTGTCAGATA 59.110 47.826 0.00 0.00 36.91 1.98
2316 2405 2.695666 CCTTCTGTATCCCGTGTCAGAT 59.304 50.000 0.00 0.00 36.91 2.90
2317 2406 2.100197 CCTTCTGTATCCCGTGTCAGA 58.900 52.381 0.00 0.00 35.54 3.27
2318 2407 1.471676 GCCTTCTGTATCCCGTGTCAG 60.472 57.143 0.00 0.00 0.00 3.51
2319 2408 0.535335 GCCTTCTGTATCCCGTGTCA 59.465 55.000 0.00 0.00 0.00 3.58
2320 2409 0.179081 GGCCTTCTGTATCCCGTGTC 60.179 60.000 0.00 0.00 0.00 3.67
2321 2410 0.617820 AGGCCTTCTGTATCCCGTGT 60.618 55.000 0.00 0.00 0.00 4.49
2322 2411 0.105039 GAGGCCTTCTGTATCCCGTG 59.895 60.000 6.77 0.00 0.00 4.94
2323 2412 1.392710 CGAGGCCTTCTGTATCCCGT 61.393 60.000 6.77 0.00 0.00 5.28
2324 2413 1.364171 CGAGGCCTTCTGTATCCCG 59.636 63.158 6.77 0.00 0.00 5.14
2325 2414 1.049289 ACCGAGGCCTTCTGTATCCC 61.049 60.000 6.77 0.00 0.00 3.85
2326 2415 0.105039 CACCGAGGCCTTCTGTATCC 59.895 60.000 6.77 0.00 0.00 2.59
2327 2416 0.105039 CCACCGAGGCCTTCTGTATC 59.895 60.000 6.77 0.00 0.00 2.24
2328 2417 0.325296 TCCACCGAGGCCTTCTGTAT 60.325 55.000 6.77 0.00 37.29 2.29
2329 2418 1.077805 TCCACCGAGGCCTTCTGTA 59.922 57.895 6.77 0.00 37.29 2.74
2330 2419 2.203788 TCCACCGAGGCCTTCTGT 60.204 61.111 6.77 1.04 37.29 3.41
2331 2420 0.970937 TAGTCCACCGAGGCCTTCTG 60.971 60.000 6.77 2.10 37.29 3.02
2332 2421 0.971447 GTAGTCCACCGAGGCCTTCT 60.971 60.000 6.77 0.00 37.29 2.85
2333 2422 0.971447 AGTAGTCCACCGAGGCCTTC 60.971 60.000 6.77 0.00 37.29 3.46
2334 2423 1.078710 AGTAGTCCACCGAGGCCTT 59.921 57.895 6.77 0.00 37.29 4.35
2335 2424 1.682684 CAGTAGTCCACCGAGGCCT 60.683 63.158 3.86 3.86 37.29 5.19
2336 2425 0.682209 TACAGTAGTCCACCGAGGCC 60.682 60.000 0.00 0.00 37.29 5.19
2337 2426 0.455005 GTACAGTAGTCCACCGAGGC 59.545 60.000 0.00 0.00 37.29 4.70
2338 2427 1.101331 GGTACAGTAGTCCACCGAGG 58.899 60.000 0.00 0.00 39.47 4.63
2339 2428 1.830279 TGGTACAGTAGTCCACCGAG 58.170 55.000 0.00 0.00 33.55 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.