Multiple sequence alignment - TraesCS3D01G065500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G065500 chr3D 100.000 3204 0 0 1 3204 28943365 28946568 0.000000e+00 5917.0
1 TraesCS3D01G065500 chr3D 87.844 1563 104 40 833 2342 28592494 28590965 0.000000e+00 1755.0
2 TraesCS3D01G065500 chr3D 90.664 1296 92 13 1071 2352 28547892 28546612 0.000000e+00 1696.0
3 TraesCS3D01G065500 chr3D 87.184 515 64 2 1191 1704 28864700 28864187 4.610000e-163 584.0
4 TraesCS3D01G065500 chr3D 84.344 511 30 23 336 805 28592989 28592488 3.770000e-124 455.0
5 TraesCS3D01G065500 chr3D 85.640 383 26 16 248 615 28548984 28548616 3.020000e-100 375.0
6 TraesCS3D01G065500 chr3D 84.127 378 25 16 254 616 28869192 28868835 1.840000e-87 333.0
7 TraesCS3D01G065500 chr3D 87.624 202 16 5 851 1048 28548259 28548063 3.220000e-55 226.0
8 TraesCS3D01G065500 chr3D 93.396 106 6 1 923 1028 28867069 28866965 4.280000e-34 156.0
9 TraesCS3D01G065500 chr3D 100.000 70 0 0 1 70 576761857 576761788 2.590000e-26 130.0
10 TraesCS3D01G065500 chr3B 92.257 1214 79 8 1150 2356 49152120 49153325 0.000000e+00 1707.0
11 TraesCS3D01G065500 chr3B 89.502 943 76 7 1429 2360 47476690 47475760 0.000000e+00 1171.0
12 TraesCS3D01G065500 chr3B 88.671 865 62 19 1528 2361 47742099 47741240 0.000000e+00 1022.0
13 TraesCS3D01G065500 chr3B 88.092 865 67 19 1528 2361 48079295 48078436 0.000000e+00 994.0
14 TraesCS3D01G065500 chr3B 94.888 489 23 2 2716 3203 47633823 47634310 0.000000e+00 763.0
15 TraesCS3D01G065500 chr3B 94.683 489 24 2 2716 3203 47649074 47649561 0.000000e+00 758.0
16 TraesCS3D01G065500 chr3B 90.365 384 33 4 1148 1529 48080064 48079683 4.770000e-138 501.0
17 TraesCS3D01G065500 chr3B 89.817 383 37 2 1148 1529 47864486 47864105 1.030000e-134 490.0
18 TraesCS3D01G065500 chr3B 89.295 383 39 2 1148 1529 47810601 47810220 2.240000e-131 479.0
19 TraesCS3D01G065500 chr3B 94.444 306 15 2 2899 3203 49130332 49130028 1.350000e-128 470.0
20 TraesCS3D01G065500 chr3B 83.854 384 43 9 249 615 47543916 47543535 6.580000e-92 348.0
21 TraesCS3D01G065500 chr3B 84.238 387 29 14 242 614 49151165 49151533 6.580000e-92 348.0
22 TraesCS3D01G065500 chr3B 95.238 189 8 1 2716 2904 49145635 49145448 6.720000e-77 298.0
23 TraesCS3D01G065500 chr3B 82.769 325 28 13 248 553 47745782 47745467 6.820000e-67 265.0
24 TraesCS3D01G065500 chr3B 82.769 325 28 13 248 553 47867115 47866800 6.820000e-67 265.0
25 TraesCS3D01G065500 chr3B 82.154 325 30 13 248 553 47813537 47813222 1.480000e-63 254.0
26 TraesCS3D01G065500 chr3B 81.846 325 31 13 248 553 48083051 48082736 6.860000e-62 248.0
27 TraesCS3D01G065500 chr3B 95.395 152 7 0 2525 2676 47647406 47647557 3.190000e-60 243.0
28 TraesCS3D01G065500 chr3B 87.850 214 13 7 2527 2728 49156774 49156986 4.130000e-59 239.0
29 TraesCS3D01G065500 chr3B 94.737 152 8 0 2525 2676 47632151 47632302 1.490000e-58 237.0
30 TraesCS3D01G065500 chr3B 87.356 174 16 5 851 1018 47543209 47543036 9.070000e-46 195.0
31 TraesCS3D01G065500 chr3B 81.622 185 15 6 244 413 47605739 47605559 5.580000e-28 135.0
32 TraesCS3D01G065500 chr3B 87.000 100 7 3 948 1045 47743101 47743006 1.220000e-19 108.0
33 TraesCS3D01G065500 chr3B 87.000 100 7 3 948 1045 47810857 47810762 1.220000e-19 108.0
34 TraesCS3D01G065500 chr3B 87.000 100 7 3 948 1045 47864746 47864651 1.220000e-19 108.0
35 TraesCS3D01G065500 chr3B 87.000 100 7 3 948 1045 48080324 48080229 1.220000e-19 108.0
36 TraesCS3D01G065500 chr3B 93.651 63 4 0 554 616 47744986 47744924 9.460000e-16 95.3
37 TraesCS3D01G065500 chr3B 93.651 63 4 0 554 616 47812742 47812680 9.460000e-16 95.3
38 TraesCS3D01G065500 chr3B 95.349 43 2 0 629 671 47744888 47744846 5.740000e-08 69.4
39 TraesCS3D01G065500 chr3B 95.349 43 2 0 629 671 47812644 47812602 5.740000e-08 69.4
40 TraesCS3D01G065500 chr3B 91.111 45 2 2 1060 1102 49152022 49152066 3.450000e-05 60.2
41 TraesCS3D01G065500 chr3A 90.287 1256 90 13 1121 2360 38281662 38280423 0.000000e+00 1615.0
42 TraesCS3D01G065500 chr3A 90.238 1219 92 11 1150 2357 38300570 38301772 0.000000e+00 1567.0
43 TraesCS3D01G065500 chr3A 89.910 446 40 5 2761 3204 38304314 38304756 1.290000e-158 569.0
44 TraesCS3D01G065500 chr3A 80.967 331 27 11 330 651 38299674 38299977 2.490000e-56 230.0
45 TraesCS3D01G065500 chr3A 80.749 187 21 10 851 1028 38282077 38281897 7.210000e-27 132.0
46 TraesCS3D01G065500 chr6B 90.414 1064 82 9 1152 2214 131693922 131694966 0.000000e+00 1382.0
47 TraesCS3D01G065500 chr6B 86.571 350 26 11 330 669 131691859 131692197 1.820000e-97 366.0
48 TraesCS3D01G065500 chr6B 89.825 285 15 5 2087 2357 131719616 131719900 1.410000e-93 353.0
49 TraesCS3D01G065500 chr6B 82.303 356 32 14 705 1047 131693260 131693597 2.430000e-71 279.0
50 TraesCS3D01G065500 chr4A 80.994 684 111 12 2530 3198 47299816 47300495 2.830000e-145 525.0
51 TraesCS3D01G065500 chr7A 80.617 681 113 12 2530 3195 99915911 99916587 2.850000e-140 508.0
52 TraesCS3D01G065500 chr7A 98.611 72 1 0 1 72 71392025 71391954 9.330000e-26 128.0
53 TraesCS3D01G065500 chr7A 98.611 72 1 0 1 72 664751453 664751524 9.330000e-26 128.0
54 TraesCS3D01G065500 chr2A 80.495 687 115 12 2533 3204 115326543 115325861 2.850000e-140 508.0
55 TraesCS3D01G065500 chr7B 100.000 70 0 0 1 70 2443691 2443760 2.590000e-26 130.0
56 TraesCS3D01G065500 chr1D 98.630 73 1 0 1 73 72955314 72955242 2.590000e-26 130.0
57 TraesCS3D01G065500 chrUn 100.000 69 0 0 1 69 232284286 232284354 9.330000e-26 128.0
58 TraesCS3D01G065500 chrUn 97.297 74 2 0 1 74 42136201 42136128 3.360000e-25 126.0
59 TraesCS3D01G065500 chrUn 97.297 74 2 0 1 74 314460892 314460819 3.360000e-25 126.0
60 TraesCS3D01G065500 chr4D 100.000 69 0 0 1 69 426767318 426767250 9.330000e-26 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G065500 chr3D 28943365 28946568 3203 False 5917.000000 5917 100.000000 1 3204 1 chr3D.!!$F1 3203
1 TraesCS3D01G065500 chr3D 28590965 28592989 2024 True 1105.000000 1755 86.094000 336 2342 2 chr3D.!!$R3 2006
2 TraesCS3D01G065500 chr3D 28546612 28548984 2372 True 765.666667 1696 87.976000 248 2352 3 chr3D.!!$R2 2104
3 TraesCS3D01G065500 chr3D 28864187 28869192 5005 True 357.666667 584 88.235667 254 1704 3 chr3D.!!$R4 1450
4 TraesCS3D01G065500 chr3B 47475760 47476690 930 True 1171.000000 1171 89.502000 1429 2360 1 chr3B.!!$R1 931
5 TraesCS3D01G065500 chr3B 49151165 49156986 5821 False 588.550000 1707 88.864000 242 2728 4 chr3B.!!$F3 2486
6 TraesCS3D01G065500 chr3B 47647406 47649561 2155 False 500.500000 758 95.039000 2525 3203 2 chr3B.!!$F2 678
7 TraesCS3D01G065500 chr3B 47632151 47634310 2159 False 500.000000 763 94.812500 2525 3203 2 chr3B.!!$F1 678
8 TraesCS3D01G065500 chr3B 48078436 48083051 4615 True 462.750000 994 86.825750 248 2361 4 chr3B.!!$R9 2113
9 TraesCS3D01G065500 chr3B 47741240 47745782 4542 True 311.940000 1022 89.488000 248 2361 5 chr3B.!!$R6 2113
10 TraesCS3D01G065500 chr3B 47864105 47867115 3010 True 287.666667 490 86.528667 248 1529 3 chr3B.!!$R8 1281
11 TraesCS3D01G065500 chr3B 47543036 47543916 880 True 271.500000 348 85.605000 249 1018 2 chr3B.!!$R5 769
12 TraesCS3D01G065500 chr3B 47810220 47813537 3317 True 201.140000 479 89.489800 248 1529 5 chr3B.!!$R7 1281
13 TraesCS3D01G065500 chr3A 38280423 38282077 1654 True 873.500000 1615 85.518000 851 2360 2 chr3A.!!$R1 1509
14 TraesCS3D01G065500 chr3A 38299674 38304756 5082 False 788.666667 1567 87.038333 330 3204 3 chr3A.!!$F1 2874
15 TraesCS3D01G065500 chr6B 131691859 131694966 3107 False 675.666667 1382 86.429333 330 2214 3 chr6B.!!$F2 1884
16 TraesCS3D01G065500 chr4A 47299816 47300495 679 False 525.000000 525 80.994000 2530 3198 1 chr4A.!!$F1 668
17 TraesCS3D01G065500 chr7A 99915911 99916587 676 False 508.000000 508 80.617000 2530 3195 1 chr7A.!!$F1 665
18 TraesCS3D01G065500 chr2A 115325861 115326543 682 True 508.000000 508 80.495000 2533 3204 1 chr2A.!!$R1 671

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
937 5786 0.037975 CAACCAACCATCCAAGCAGC 60.038 55.0 0.0 0.0 0.0 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2472 11022 0.537188 GTTCTGATTCCCTCGCCTCA 59.463 55.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.018423 ACATGGGCCTCAAGATTAACC 57.982 47.619 4.53 0.00 0.00 2.85
23 24 2.311542 ACATGGGCCTCAAGATTAACCA 59.688 45.455 4.53 0.00 0.00 3.67
24 25 2.806945 TGGGCCTCAAGATTAACCAG 57.193 50.000 4.53 0.00 0.00 4.00
25 26 1.284785 TGGGCCTCAAGATTAACCAGG 59.715 52.381 4.53 0.00 0.00 4.45
26 27 1.410224 GGGCCTCAAGATTAACCAGGG 60.410 57.143 0.84 0.00 0.00 4.45
27 28 1.564348 GGCCTCAAGATTAACCAGGGA 59.436 52.381 0.00 0.00 0.00 4.20
28 29 2.175715 GGCCTCAAGATTAACCAGGGAT 59.824 50.000 0.00 0.00 0.00 3.85
29 30 3.373110 GGCCTCAAGATTAACCAGGGATT 60.373 47.826 0.00 0.00 0.00 3.01
30 31 4.141251 GGCCTCAAGATTAACCAGGGATTA 60.141 45.833 0.00 0.00 0.00 1.75
31 32 5.066593 GCCTCAAGATTAACCAGGGATTAG 58.933 45.833 0.00 0.00 0.00 1.73
32 33 5.398012 GCCTCAAGATTAACCAGGGATTAGT 60.398 44.000 0.00 0.00 0.00 2.24
33 34 6.058183 CCTCAAGATTAACCAGGGATTAGTG 58.942 44.000 0.00 0.00 0.00 2.74
34 35 6.353082 CCTCAAGATTAACCAGGGATTAGTGT 60.353 42.308 0.00 0.00 0.00 3.55
35 36 6.650120 TCAAGATTAACCAGGGATTAGTGTC 58.350 40.000 0.00 0.00 0.00 3.67
36 37 6.443849 TCAAGATTAACCAGGGATTAGTGTCT 59.556 38.462 0.00 0.00 0.00 3.41
37 38 6.893020 AGATTAACCAGGGATTAGTGTCTT 57.107 37.500 0.00 0.00 0.00 3.01
38 39 7.989947 AGATTAACCAGGGATTAGTGTCTTA 57.010 36.000 0.00 0.00 0.00 2.10
39 40 8.568617 AGATTAACCAGGGATTAGTGTCTTAT 57.431 34.615 0.00 0.00 0.00 1.73
40 41 9.670442 AGATTAACCAGGGATTAGTGTCTTATA 57.330 33.333 0.00 0.00 0.00 0.98
43 44 6.688073 ACCAGGGATTAGTGTCTTATATGG 57.312 41.667 0.00 0.00 0.00 2.74
44 45 5.548056 ACCAGGGATTAGTGTCTTATATGGG 59.452 44.000 0.00 0.00 0.00 4.00
45 46 5.491982 CAGGGATTAGTGTCTTATATGGGC 58.508 45.833 0.00 0.00 0.00 5.36
46 47 4.536489 AGGGATTAGTGTCTTATATGGGCC 59.464 45.833 0.00 0.00 0.00 5.80
47 48 4.536489 GGGATTAGTGTCTTATATGGGCCT 59.464 45.833 4.53 0.00 0.00 5.19
48 49 5.724854 GGGATTAGTGTCTTATATGGGCCTA 59.275 44.000 4.53 0.00 0.00 3.93
49 50 6.214819 GGGATTAGTGTCTTATATGGGCCTAA 59.785 42.308 4.53 0.00 0.00 2.69
50 51 7.331791 GGATTAGTGTCTTATATGGGCCTAAG 58.668 42.308 4.53 4.81 0.00 2.18
51 52 4.625607 AGTGTCTTATATGGGCCTAAGC 57.374 45.455 4.53 2.34 38.76 3.09
64 65 2.728007 GCCTAAGCCCATCCATAATCC 58.272 52.381 0.00 0.00 0.00 3.01
65 66 2.041620 GCCTAAGCCCATCCATAATCCA 59.958 50.000 0.00 0.00 0.00 3.41
66 67 3.309410 GCCTAAGCCCATCCATAATCCAT 60.309 47.826 0.00 0.00 0.00 3.41
67 68 4.530875 CCTAAGCCCATCCATAATCCATC 58.469 47.826 0.00 0.00 0.00 3.51
68 69 4.018141 CCTAAGCCCATCCATAATCCATCA 60.018 45.833 0.00 0.00 0.00 3.07
69 70 4.687262 AAGCCCATCCATAATCCATCAT 57.313 40.909 0.00 0.00 0.00 2.45
70 71 3.977312 AGCCCATCCATAATCCATCATG 58.023 45.455 0.00 0.00 0.00 3.07
71 72 3.594685 AGCCCATCCATAATCCATCATGA 59.405 43.478 0.00 0.00 0.00 3.07
72 73 4.232122 AGCCCATCCATAATCCATCATGAT 59.768 41.667 1.18 1.18 0.00 2.45
73 74 4.341235 GCCCATCCATAATCCATCATGATG 59.659 45.833 25.97 25.97 38.51 3.07
87 88 6.628919 CATCATGATGGAGAAAATAGCACA 57.371 37.500 25.37 0.00 35.24 4.57
88 89 7.215719 CATCATGATGGAGAAAATAGCACAT 57.784 36.000 25.37 0.00 35.24 3.21
89 90 6.872628 TCATGATGGAGAAAATAGCACATC 57.127 37.500 0.00 0.00 36.25 3.06
90 91 6.598503 TCATGATGGAGAAAATAGCACATCT 58.401 36.000 0.00 0.00 36.56 2.90
91 92 7.058525 TCATGATGGAGAAAATAGCACATCTT 58.941 34.615 0.00 0.00 36.56 2.40
92 93 7.558807 TCATGATGGAGAAAATAGCACATCTTT 59.441 33.333 0.00 0.00 36.56 2.52
93 94 7.092137 TGATGGAGAAAATAGCACATCTTTG 57.908 36.000 0.00 0.00 36.56 2.77
94 95 5.902613 TGGAGAAAATAGCACATCTTTGG 57.097 39.130 0.00 0.00 0.00 3.28
95 96 4.158394 TGGAGAAAATAGCACATCTTTGGC 59.842 41.667 0.00 0.00 0.00 4.52
96 97 4.158394 GGAGAAAATAGCACATCTTTGGCA 59.842 41.667 0.00 0.00 0.00 4.92
97 98 5.064441 AGAAAATAGCACATCTTTGGCAC 57.936 39.130 0.00 0.00 0.00 5.01
98 99 3.874392 AAATAGCACATCTTTGGCACC 57.126 42.857 0.00 0.00 0.00 5.01
99 100 2.814805 ATAGCACATCTTTGGCACCT 57.185 45.000 0.00 0.00 0.00 4.00
100 101 1.825090 TAGCACATCTTTGGCACCTG 58.175 50.000 0.00 0.00 0.00 4.00
101 102 0.111061 AGCACATCTTTGGCACCTGA 59.889 50.000 0.00 0.00 0.00 3.86
102 103 0.961019 GCACATCTTTGGCACCTGAA 59.039 50.000 0.00 0.00 0.00 3.02
103 104 1.340889 GCACATCTTTGGCACCTGAAA 59.659 47.619 0.00 0.00 0.00 2.69
104 105 2.863704 GCACATCTTTGGCACCTGAAAC 60.864 50.000 0.00 0.00 0.00 2.78
105 106 1.608590 ACATCTTTGGCACCTGAAACG 59.391 47.619 0.00 0.00 0.00 3.60
106 107 1.068333 CATCTTTGGCACCTGAAACGG 60.068 52.381 0.00 0.00 0.00 4.44
107 108 0.181587 TCTTTGGCACCTGAAACGGA 59.818 50.000 0.00 0.00 0.00 4.69
108 109 0.310854 CTTTGGCACCTGAAACGGAC 59.689 55.000 0.00 0.00 0.00 4.79
109 110 0.394488 TTTGGCACCTGAAACGGACA 60.394 50.000 0.00 0.00 0.00 4.02
110 111 0.394488 TTGGCACCTGAAACGGACAA 60.394 50.000 0.00 0.00 0.00 3.18
111 112 0.817634 TGGCACCTGAAACGGACAAG 60.818 55.000 0.00 0.00 0.00 3.16
112 113 1.515521 GGCACCTGAAACGGACAAGG 61.516 60.000 0.00 0.00 0.00 3.61
113 114 0.534203 GCACCTGAAACGGACAAGGA 60.534 55.000 3.80 0.00 0.00 3.36
114 115 1.512926 CACCTGAAACGGACAAGGAG 58.487 55.000 3.80 0.00 0.00 3.69
115 116 1.129058 ACCTGAAACGGACAAGGAGT 58.871 50.000 3.80 0.00 0.00 3.85
116 117 1.489230 ACCTGAAACGGACAAGGAGTT 59.511 47.619 3.80 0.00 0.00 3.01
117 118 2.092592 ACCTGAAACGGACAAGGAGTTT 60.093 45.455 3.80 0.00 40.32 2.66
121 122 4.895224 GAAACGGACAAGGAGTTTCTTT 57.105 40.909 11.58 0.00 45.88 2.52
122 123 4.598062 GAAACGGACAAGGAGTTTCTTTG 58.402 43.478 11.58 0.10 45.88 2.77
123 124 1.947456 ACGGACAAGGAGTTTCTTTGC 59.053 47.619 1.41 0.00 37.01 3.68
124 125 1.266989 CGGACAAGGAGTTTCTTTGCC 59.733 52.381 1.41 3.59 37.01 4.52
125 126 1.266989 GGACAAGGAGTTTCTTTGCCG 59.733 52.381 1.41 0.00 37.01 5.69
126 127 1.266989 GACAAGGAGTTTCTTTGCCGG 59.733 52.381 0.00 0.00 37.01 6.13
127 128 0.598065 CAAGGAGTTTCTTTGCCGGG 59.402 55.000 2.18 0.00 0.00 5.73
128 129 1.179174 AAGGAGTTTCTTTGCCGGGC 61.179 55.000 13.32 13.32 0.00 6.13
129 130 1.603739 GGAGTTTCTTTGCCGGGCT 60.604 57.895 21.46 0.00 0.00 5.19
130 131 1.587043 GGAGTTTCTTTGCCGGGCTC 61.587 60.000 21.46 6.33 0.00 4.70
131 132 0.889186 GAGTTTCTTTGCCGGGCTCA 60.889 55.000 21.46 3.74 0.00 4.26
132 133 0.467290 AGTTTCTTTGCCGGGCTCAA 60.467 50.000 21.46 11.94 0.00 3.02
133 134 0.387565 GTTTCTTTGCCGGGCTCAAA 59.612 50.000 21.46 12.18 33.04 2.69
134 135 1.000843 GTTTCTTTGCCGGGCTCAAAT 59.999 47.619 21.46 0.00 33.54 2.32
135 136 0.602562 TTCTTTGCCGGGCTCAAATG 59.397 50.000 21.46 8.66 33.54 2.32
136 137 0.251121 TCTTTGCCGGGCTCAAATGA 60.251 50.000 21.46 10.83 33.54 2.57
137 138 0.819582 CTTTGCCGGGCTCAAATGAT 59.180 50.000 21.46 0.00 33.54 2.45
138 139 0.817013 TTTGCCGGGCTCAAATGATC 59.183 50.000 21.46 0.00 0.00 2.92
139 140 1.375853 TTGCCGGGCTCAAATGATCG 61.376 55.000 21.46 0.00 0.00 3.69
140 141 3.025619 CCGGGCTCAAATGATCGC 58.974 61.111 0.00 0.00 0.00 4.58
141 142 1.819208 CCGGGCTCAAATGATCGCA 60.819 57.895 0.00 0.00 0.00 5.10
142 143 1.645455 CGGGCTCAAATGATCGCAG 59.355 57.895 2.90 0.00 0.00 5.18
143 144 0.811219 CGGGCTCAAATGATCGCAGA 60.811 55.000 2.90 0.00 45.75 4.26
144 145 1.602311 GGGCTCAAATGATCGCAGAT 58.398 50.000 0.00 0.00 45.12 2.90
145 146 1.266175 GGGCTCAAATGATCGCAGATG 59.734 52.381 0.00 0.00 45.12 2.90
146 147 2.216046 GGCTCAAATGATCGCAGATGA 58.784 47.619 0.00 0.00 45.12 2.92
147 148 2.615447 GGCTCAAATGATCGCAGATGAA 59.385 45.455 0.00 0.00 45.12 2.57
148 149 3.547613 GGCTCAAATGATCGCAGATGAAC 60.548 47.826 0.00 0.00 45.12 3.18
149 150 3.064408 GCTCAAATGATCGCAGATGAACA 59.936 43.478 0.00 0.00 45.12 3.18
150 151 4.785658 GCTCAAATGATCGCAGATGAACAG 60.786 45.833 0.00 0.00 45.12 3.16
151 152 4.256110 TCAAATGATCGCAGATGAACAGT 58.744 39.130 0.00 0.00 45.12 3.55
152 153 5.418676 TCAAATGATCGCAGATGAACAGTA 58.581 37.500 0.00 0.00 45.12 2.74
153 154 5.874261 TCAAATGATCGCAGATGAACAGTAA 59.126 36.000 0.00 0.00 45.12 2.24
154 155 6.371271 TCAAATGATCGCAGATGAACAGTAAA 59.629 34.615 0.00 0.00 45.12 2.01
155 156 5.980698 ATGATCGCAGATGAACAGTAAAG 57.019 39.130 0.00 0.00 45.12 1.85
156 157 4.820897 TGATCGCAGATGAACAGTAAAGT 58.179 39.130 0.00 0.00 45.12 2.66
157 158 4.864806 TGATCGCAGATGAACAGTAAAGTC 59.135 41.667 0.00 0.00 45.12 3.01
158 159 4.251543 TCGCAGATGAACAGTAAAGTCA 57.748 40.909 0.00 0.00 0.00 3.41
159 160 4.627058 TCGCAGATGAACAGTAAAGTCAA 58.373 39.130 0.00 0.00 0.00 3.18
160 161 4.686091 TCGCAGATGAACAGTAAAGTCAAG 59.314 41.667 0.00 0.00 0.00 3.02
161 162 4.686091 CGCAGATGAACAGTAAAGTCAAGA 59.314 41.667 0.00 0.00 0.00 3.02
162 163 5.177511 CGCAGATGAACAGTAAAGTCAAGAA 59.822 40.000 0.00 0.00 0.00 2.52
163 164 6.292865 CGCAGATGAACAGTAAAGTCAAGAAA 60.293 38.462 0.00 0.00 0.00 2.52
164 165 7.417612 GCAGATGAACAGTAAAGTCAAGAAAA 58.582 34.615 0.00 0.00 0.00 2.29
165 166 7.915397 GCAGATGAACAGTAAAGTCAAGAAAAA 59.085 33.333 0.00 0.00 0.00 1.94
166 167 9.956720 CAGATGAACAGTAAAGTCAAGAAAAAT 57.043 29.630 0.00 0.00 0.00 1.82
167 168 9.956720 AGATGAACAGTAAAGTCAAGAAAAATG 57.043 29.630 0.00 0.00 0.00 2.32
168 169 9.736023 GATGAACAGTAAAGTCAAGAAAAATGT 57.264 29.630 0.00 0.00 0.00 2.71
170 171 9.921637 TGAACAGTAAAGTCAAGAAAAATGTTT 57.078 25.926 0.00 0.00 0.00 2.83
173 174 9.705290 ACAGTAAAGTCAAGAAAAATGTTTTGT 57.295 25.926 0.00 0.00 0.00 2.83
216 217 6.857777 TTTTGTGGCCAACATTAAGAAATG 57.142 33.333 7.24 0.00 46.66 2.32
230 231 7.944061 CATTAAGAAATGTGCCTCAATATCCA 58.056 34.615 0.00 0.00 38.15 3.41
231 232 8.582437 CATTAAGAAATGTGCCTCAATATCCAT 58.418 33.333 0.00 0.00 38.15 3.41
232 233 6.645790 AAGAAATGTGCCTCAATATCCATC 57.354 37.500 0.00 0.00 0.00 3.51
233 234 5.075493 AGAAATGTGCCTCAATATCCATCC 58.925 41.667 0.00 0.00 0.00 3.51
234 235 4.458256 AATGTGCCTCAATATCCATCCA 57.542 40.909 0.00 0.00 0.00 3.41
235 236 3.949586 TGTGCCTCAATATCCATCCAA 57.050 42.857 0.00 0.00 0.00 3.53
236 237 4.458256 TGTGCCTCAATATCCATCCAAT 57.542 40.909 0.00 0.00 0.00 3.16
237 238 5.581350 TGTGCCTCAATATCCATCCAATA 57.419 39.130 0.00 0.00 0.00 1.90
238 239 6.143551 TGTGCCTCAATATCCATCCAATAT 57.856 37.500 0.00 0.00 0.00 1.28
239 240 5.947566 TGTGCCTCAATATCCATCCAATATG 59.052 40.000 0.00 0.00 0.00 1.78
240 241 5.359009 GTGCCTCAATATCCATCCAATATGG 59.641 44.000 0.00 0.00 40.48 2.74
244 245 7.363268 GCCTCAATATCCATCCAATATGGTTTC 60.363 40.741 4.06 0.00 39.03 2.78
285 286 5.574188 ACTTAGCTTTGGTGAAATCCATCT 58.426 37.500 0.00 0.00 37.33 2.90
318 319 1.265365 GTTGTGCTCAGCAGAAACCTC 59.735 52.381 11.46 0.00 43.09 3.85
331 344 5.573337 CAGAAACCTCTGGAAATCCATTC 57.427 43.478 1.93 3.85 46.46 2.67
354 367 1.024271 TCACAGAGGCAGCAAAACAC 58.976 50.000 0.00 0.00 0.00 3.32
358 371 0.963962 AGAGGCAGCAAAACACATGG 59.036 50.000 0.00 0.00 0.00 3.66
377 395 1.986413 CCAGAACCAGGACCAGGAG 59.014 63.158 10.44 0.00 0.00 3.69
413 432 2.570135 GATCTCACATCCCAAAGCTCC 58.430 52.381 0.00 0.00 0.00 4.70
414 433 1.661463 TCTCACATCCCAAAGCTCCT 58.339 50.000 0.00 0.00 0.00 3.69
415 434 1.280133 TCTCACATCCCAAAGCTCCTG 59.720 52.381 0.00 0.00 0.00 3.86
417 436 1.171308 CACATCCCAAAGCTCCTGTG 58.829 55.000 0.00 0.00 0.00 3.66
640 1517 1.200020 CATCGGGTTGTTCTTGCCTTC 59.800 52.381 0.00 0.00 0.00 3.46
671 1548 2.149973 ATTTTGACCAGGGCATCTCC 57.850 50.000 0.00 0.00 0.00 3.71
673 1550 1.075601 TTTGACCAGGGCATCTCCTT 58.924 50.000 0.00 0.00 34.31 3.36
675 1552 0.329261 TGACCAGGGCATCTCCTTTG 59.671 55.000 0.00 0.00 34.31 2.77
676 1553 1.000396 ACCAGGGCATCTCCTTTGC 60.000 57.895 0.00 0.00 39.41 3.68
680 1594 1.897802 CAGGGCATCTCCTTTGCTTTT 59.102 47.619 0.00 0.00 40.03 2.27
682 1596 2.564504 AGGGCATCTCCTTTGCTTTTTC 59.435 45.455 0.00 0.00 40.03 2.29
809 4194 7.263100 CATGAATATGCTACTGCCAACTTTA 57.737 36.000 0.00 0.00 38.71 1.85
894 4377 0.968405 AATGCCATCCGTTTTGCAGT 59.032 45.000 0.00 0.00 37.12 4.40
915 4408 5.045872 AGTTACATAAATAGCCGTCCGTTC 58.954 41.667 0.00 0.00 0.00 3.95
936 5785 0.604578 CCAACCAACCATCCAAGCAG 59.395 55.000 0.00 0.00 0.00 4.24
937 5786 0.037975 CAACCAACCATCCAAGCAGC 60.038 55.000 0.00 0.00 0.00 5.25
989 5844 3.306088 GCACTTGCTTAGGTGACTCACTA 60.306 47.826 9.08 0.00 39.06 2.74
1103 6435 3.818387 CACGATCACACGTACTACAACT 58.182 45.455 0.00 0.00 44.76 3.16
1104 6436 3.844657 CACGATCACACGTACTACAACTC 59.155 47.826 0.00 0.00 44.76 3.01
1105 6437 3.750130 ACGATCACACGTACTACAACTCT 59.250 43.478 0.00 0.00 44.72 3.24
1107 6439 4.787083 CGATCACACGTACTACAACTCTTC 59.213 45.833 0.00 0.00 0.00 2.87
1108 6440 5.616204 CGATCACACGTACTACAACTCTTCA 60.616 44.000 0.00 0.00 0.00 3.02
1109 6441 5.104562 TCACACGTACTACAACTCTTCAG 57.895 43.478 0.00 0.00 0.00 3.02
1114 6446 5.958372 CACGTACTACAACTCTTCAGATACG 59.042 44.000 0.00 0.00 38.95 3.06
1115 6447 4.962751 CGTACTACAACTCTTCAGATACGC 59.037 45.833 0.00 0.00 0.00 4.42
1116 6448 5.220624 CGTACTACAACTCTTCAGATACGCT 60.221 44.000 0.00 0.00 0.00 5.07
1117 6449 4.987832 ACTACAACTCTTCAGATACGCTG 58.012 43.478 0.00 0.00 46.31 5.18
1118 6450 3.944055 ACAACTCTTCAGATACGCTGT 57.056 42.857 0.00 0.00 45.14 4.40
1128 6460 5.342806 TCAGATACGCTGTTGTTTTCTTG 57.657 39.130 0.00 0.00 45.14 3.02
1141 6473 3.003275 TGTTTTCTTGTTGCTGACGATCC 59.997 43.478 0.00 0.00 0.00 3.36
1241 8419 3.681835 GGTCGTCGCACCACTCCT 61.682 66.667 8.44 0.00 36.32 3.69
1463 8641 0.175760 CGCTTCGATTCCCTCTTCCA 59.824 55.000 0.00 0.00 0.00 3.53
1477 8655 0.252479 CTTCCATGCAGAGCCTCACT 59.748 55.000 0.00 0.00 0.00 3.41
1479 8657 0.826715 TCCATGCAGAGCCTCACTAC 59.173 55.000 0.00 0.00 0.00 2.73
1777 9361 3.967987 AGCAATCTTATTACTCCTCCCGT 59.032 43.478 0.00 0.00 0.00 5.28
2048 9632 2.226315 ATGAGCCACCTGCACCTGA 61.226 57.895 0.00 0.00 44.83 3.86
2158 9742 1.447838 GCTCCTCGCGATGTCCAAA 60.448 57.895 10.36 0.00 0.00 3.28
2234 9850 1.593006 CTCCCAACGGAATTCGAATCG 59.407 52.381 11.83 13.92 42.43 3.34
2245 9861 0.110419 TTCGAATCGTGGCGCTTTTG 60.110 50.000 7.64 0.00 0.00 2.44
2352 9990 6.039941 TGGTGGTCGAATAAATCACAGTTTTT 59.960 34.615 0.00 0.00 0.00 1.94
2400 10039 5.814705 TGTTTTGTTGAAGTAATTTGCCTGG 59.185 36.000 0.00 0.00 0.00 4.45
2412 10051 8.133024 AGTAATTTGCCTGGATTTCAAATGTA 57.867 30.769 9.72 4.31 39.50 2.29
2416 10539 5.186256 TGCCTGGATTTCAAATGTAGGTA 57.814 39.130 0.00 4.29 0.00 3.08
2417 10540 4.947388 TGCCTGGATTTCAAATGTAGGTAC 59.053 41.667 0.00 0.00 0.00 3.34
2418 10541 4.035208 GCCTGGATTTCAAATGTAGGTACG 59.965 45.833 0.00 0.00 0.00 3.67
2419 10542 5.183228 CCTGGATTTCAAATGTAGGTACGT 58.817 41.667 0.00 0.00 0.00 3.57
2420 10543 6.342906 CCTGGATTTCAAATGTAGGTACGTA 58.657 40.000 0.00 0.00 0.00 3.57
2430 10553 9.800433 TCAAATGTAGGTACGTAATTCGATTTA 57.200 29.630 0.00 0.00 42.86 1.40
2452 10575 3.670105 TGGGAACAAAGATGGAGGC 57.330 52.632 0.00 0.00 37.44 4.70
2456 11006 1.538047 GAACAAAGATGGAGGCTGCA 58.462 50.000 12.23 12.23 0.00 4.41
2458 11008 0.957395 ACAAAGATGGAGGCTGCACG 60.957 55.000 12.06 0.16 0.00 5.34
2485 11035 3.470888 CCGGTGAGGCGAGGGAAT 61.471 66.667 0.00 0.00 0.00 3.01
2486 11036 2.107141 CGGTGAGGCGAGGGAATC 59.893 66.667 0.00 0.00 0.00 2.52
2487 11037 2.721167 CGGTGAGGCGAGGGAATCA 61.721 63.158 0.00 0.00 0.00 2.57
2488 11038 1.144936 GGTGAGGCGAGGGAATCAG 59.855 63.158 0.00 0.00 0.00 2.90
2489 11039 1.330655 GGTGAGGCGAGGGAATCAGA 61.331 60.000 0.00 0.00 0.00 3.27
2490 11040 0.537188 GTGAGGCGAGGGAATCAGAA 59.463 55.000 0.00 0.00 0.00 3.02
2493 11043 2.174319 GGCGAGGGAATCAGAACGC 61.174 63.158 0.00 0.00 44.18 4.84
2494 11044 1.447838 GCGAGGGAATCAGAACGCA 60.448 57.895 0.00 0.00 44.29 5.24
2503 13086 3.064545 GGAATCAGAACGCAATGAAGAGG 59.935 47.826 0.00 0.00 0.00 3.69
2504 13087 1.442769 TCAGAACGCAATGAAGAGGC 58.557 50.000 0.00 0.00 0.00 4.70
2505 13088 1.159285 CAGAACGCAATGAAGAGGCA 58.841 50.000 0.00 0.00 0.00 4.75
2508 13091 2.622942 AGAACGCAATGAAGAGGCAAAA 59.377 40.909 0.00 0.00 0.00 2.44
2510 13093 1.956477 ACGCAATGAAGAGGCAAAACT 59.044 42.857 0.00 0.00 0.00 2.66
2511 13094 2.287788 ACGCAATGAAGAGGCAAAACTG 60.288 45.455 0.00 0.00 0.00 3.16
2517 13100 3.784338 TGAAGAGGCAAAACTGCAAAAG 58.216 40.909 0.00 0.00 36.33 2.27
2521 13104 3.448660 AGAGGCAAAACTGCAAAAGAGTT 59.551 39.130 0.00 0.00 35.08 3.01
2522 13105 3.524541 AGGCAAAACTGCAAAAGAGTTG 58.475 40.909 0.00 0.00 33.85 3.16
2523 13106 2.030823 GGCAAAACTGCAAAAGAGTTGC 59.969 45.455 4.12 4.12 42.97 4.17
2564 14507 2.496871 TGCCCACTTCTTTTATGCCATG 59.503 45.455 0.00 0.00 0.00 3.66
2703 14761 6.184580 ACAACTACAGTCACTAATCTCTCG 57.815 41.667 0.00 0.00 0.00 4.04
2713 14771 3.933332 CACTAATCTCTCGAAACCCCAAC 59.067 47.826 0.00 0.00 0.00 3.77
2850 16274 9.710900 TTGTTGTCACAGTCATATATCCATATC 57.289 33.333 0.00 0.00 33.22 1.63
2856 16280 8.683615 TCACAGTCATATATCCATATCGTTACC 58.316 37.037 0.00 0.00 0.00 2.85
2912 16336 5.121298 TCGCTGACAAGAATCATTGAAGAAG 59.879 40.000 0.00 0.00 34.20 2.85
3006 16430 1.452145 GAAACGTGGGCAGGCTTTGA 61.452 55.000 0.00 0.00 0.00 2.69
3011 16435 0.244721 GTGGGCAGGCTTTGAACATC 59.755 55.000 0.00 0.00 0.00 3.06
3014 16438 1.344114 GGGCAGGCTTTGAACATCAAA 59.656 47.619 5.50 5.50 43.37 2.69
3025 16449 7.171337 GGCTTTGAACATCAAATTTCTAAAGCA 59.829 33.333 20.21 3.12 44.37 3.91
3105 16529 1.539065 CCCTAAGCGCGTCAAGATCAT 60.539 52.381 8.43 0.00 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.167892 TGGTTAATCTTGAGGCCCATGTAT 59.832 41.667 0.00 0.00 0.00 2.29
1 2 3.525609 TGGTTAATCTTGAGGCCCATGTA 59.474 43.478 0.00 0.00 0.00 2.29
2 3 2.311542 TGGTTAATCTTGAGGCCCATGT 59.688 45.455 0.00 0.00 0.00 3.21
3 4 2.954318 CTGGTTAATCTTGAGGCCCATG 59.046 50.000 0.00 0.00 0.00 3.66
4 5 2.091665 CCTGGTTAATCTTGAGGCCCAT 60.092 50.000 0.00 0.00 0.00 4.00
5 6 1.284785 CCTGGTTAATCTTGAGGCCCA 59.715 52.381 0.00 0.00 0.00 5.36
6 7 1.410224 CCCTGGTTAATCTTGAGGCCC 60.410 57.143 0.00 0.00 0.00 5.80
7 8 1.564348 TCCCTGGTTAATCTTGAGGCC 59.436 52.381 0.00 0.00 0.00 5.19
8 9 3.584733 ATCCCTGGTTAATCTTGAGGC 57.415 47.619 0.00 0.00 0.00 4.70
9 10 6.058183 CACTAATCCCTGGTTAATCTTGAGG 58.942 44.000 0.00 0.00 0.00 3.86
10 11 6.653989 ACACTAATCCCTGGTTAATCTTGAG 58.346 40.000 0.00 0.00 0.00 3.02
11 12 6.443849 AGACACTAATCCCTGGTTAATCTTGA 59.556 38.462 0.00 0.00 0.00 3.02
12 13 6.653989 AGACACTAATCCCTGGTTAATCTTG 58.346 40.000 0.00 0.00 0.00 3.02
13 14 6.893020 AGACACTAATCCCTGGTTAATCTT 57.107 37.500 0.00 0.00 0.00 2.40
14 15 6.893020 AAGACACTAATCCCTGGTTAATCT 57.107 37.500 0.00 0.00 0.00 2.40
17 18 8.656806 CCATATAAGACACTAATCCCTGGTTAA 58.343 37.037 0.00 0.00 0.00 2.01
18 19 7.236847 CCCATATAAGACACTAATCCCTGGTTA 59.763 40.741 0.00 0.00 0.00 2.85
19 20 6.044404 CCCATATAAGACACTAATCCCTGGTT 59.956 42.308 0.00 0.00 0.00 3.67
20 21 5.548056 CCCATATAAGACACTAATCCCTGGT 59.452 44.000 0.00 0.00 0.00 4.00
21 22 5.571658 GCCCATATAAGACACTAATCCCTGG 60.572 48.000 0.00 0.00 0.00 4.45
22 23 5.491982 GCCCATATAAGACACTAATCCCTG 58.508 45.833 0.00 0.00 0.00 4.45
23 24 4.536489 GGCCCATATAAGACACTAATCCCT 59.464 45.833 0.00 0.00 0.00 4.20
24 25 4.536489 AGGCCCATATAAGACACTAATCCC 59.464 45.833 0.00 0.00 0.00 3.85
25 26 5.763876 AGGCCCATATAAGACACTAATCC 57.236 43.478 0.00 0.00 0.00 3.01
26 27 6.819146 GCTTAGGCCCATATAAGACACTAATC 59.181 42.308 12.46 0.00 31.87 1.75
27 28 6.712276 GCTTAGGCCCATATAAGACACTAAT 58.288 40.000 12.46 0.00 31.87 1.73
28 29 6.110411 GCTTAGGCCCATATAAGACACTAA 57.890 41.667 12.46 0.00 31.87 2.24
29 30 5.740290 GCTTAGGCCCATATAAGACACTA 57.260 43.478 12.46 0.00 31.87 2.74
30 31 4.625607 GCTTAGGCCCATATAAGACACT 57.374 45.455 12.46 0.00 31.87 3.55
44 45 2.041620 TGGATTATGGATGGGCTTAGGC 59.958 50.000 0.00 0.00 37.82 3.93
45 46 4.018141 TGATGGATTATGGATGGGCTTAGG 60.018 45.833 0.00 0.00 0.00 2.69
46 47 5.183530 TGATGGATTATGGATGGGCTTAG 57.816 43.478 0.00 0.00 0.00 2.18
47 48 5.253564 TCATGATGGATTATGGATGGGCTTA 59.746 40.000 0.00 0.00 0.00 3.09
48 49 4.044952 TCATGATGGATTATGGATGGGCTT 59.955 41.667 0.00 0.00 0.00 4.35
49 50 3.594685 TCATGATGGATTATGGATGGGCT 59.405 43.478 0.00 0.00 0.00 5.19
50 51 3.972133 TCATGATGGATTATGGATGGGC 58.028 45.455 0.00 0.00 0.00 5.36
64 65 6.628919 TGTGCTATTTTCTCCATCATGATG 57.371 37.500 25.97 25.97 38.51 3.07
65 66 7.232188 AGATGTGCTATTTTCTCCATCATGAT 58.768 34.615 1.18 1.18 32.98 2.45
66 67 6.598503 AGATGTGCTATTTTCTCCATCATGA 58.401 36.000 0.00 0.00 32.98 3.07
67 68 6.879276 AGATGTGCTATTTTCTCCATCATG 57.121 37.500 0.00 0.00 32.98 3.07
68 69 7.201884 CCAAAGATGTGCTATTTTCTCCATCAT 60.202 37.037 0.00 0.00 32.98 2.45
69 70 6.095860 CCAAAGATGTGCTATTTTCTCCATCA 59.904 38.462 0.00 0.00 32.98 3.07
70 71 6.501781 CCAAAGATGTGCTATTTTCTCCATC 58.498 40.000 0.00 0.00 0.00 3.51
71 72 5.163478 GCCAAAGATGTGCTATTTTCTCCAT 60.163 40.000 0.00 0.00 0.00 3.41
72 73 4.158394 GCCAAAGATGTGCTATTTTCTCCA 59.842 41.667 0.00 0.00 0.00 3.86
73 74 4.158394 TGCCAAAGATGTGCTATTTTCTCC 59.842 41.667 0.00 0.00 0.00 3.71
74 75 5.098211 GTGCCAAAGATGTGCTATTTTCTC 58.902 41.667 0.00 0.00 0.00 2.87
75 76 4.082026 GGTGCCAAAGATGTGCTATTTTCT 60.082 41.667 0.00 0.00 0.00 2.52
76 77 4.082026 AGGTGCCAAAGATGTGCTATTTTC 60.082 41.667 0.00 0.00 0.00 2.29
77 78 3.834231 AGGTGCCAAAGATGTGCTATTTT 59.166 39.130 0.00 0.00 0.00 1.82
78 79 3.194116 CAGGTGCCAAAGATGTGCTATTT 59.806 43.478 0.00 0.00 0.00 1.40
79 80 2.756760 CAGGTGCCAAAGATGTGCTATT 59.243 45.455 0.00 0.00 0.00 1.73
80 81 2.025981 TCAGGTGCCAAAGATGTGCTAT 60.026 45.455 0.00 0.00 0.00 2.97
81 82 1.350684 TCAGGTGCCAAAGATGTGCTA 59.649 47.619 0.00 0.00 0.00 3.49
82 83 0.111061 TCAGGTGCCAAAGATGTGCT 59.889 50.000 0.00 0.00 0.00 4.40
83 84 0.961019 TTCAGGTGCCAAAGATGTGC 59.039 50.000 0.00 0.00 0.00 4.57
84 85 2.605338 CGTTTCAGGTGCCAAAGATGTG 60.605 50.000 0.00 0.00 0.00 3.21
85 86 1.608590 CGTTTCAGGTGCCAAAGATGT 59.391 47.619 0.00 0.00 0.00 3.06
86 87 1.068333 CCGTTTCAGGTGCCAAAGATG 60.068 52.381 0.00 0.00 0.00 2.90
87 88 1.202879 TCCGTTTCAGGTGCCAAAGAT 60.203 47.619 0.00 0.00 0.00 2.40
88 89 0.181587 TCCGTTTCAGGTGCCAAAGA 59.818 50.000 0.00 0.00 0.00 2.52
89 90 0.310854 GTCCGTTTCAGGTGCCAAAG 59.689 55.000 0.00 0.00 0.00 2.77
90 91 0.394488 TGTCCGTTTCAGGTGCCAAA 60.394 50.000 0.00 0.00 0.00 3.28
91 92 0.394488 TTGTCCGTTTCAGGTGCCAA 60.394 50.000 0.00 0.00 0.00 4.52
92 93 0.817634 CTTGTCCGTTTCAGGTGCCA 60.818 55.000 0.00 0.00 0.00 4.92
93 94 1.515521 CCTTGTCCGTTTCAGGTGCC 61.516 60.000 0.00 0.00 0.00 5.01
94 95 0.534203 TCCTTGTCCGTTTCAGGTGC 60.534 55.000 0.00 0.00 0.00 5.01
95 96 1.202651 ACTCCTTGTCCGTTTCAGGTG 60.203 52.381 0.00 0.00 0.00 4.00
96 97 1.129058 ACTCCTTGTCCGTTTCAGGT 58.871 50.000 0.00 0.00 0.00 4.00
97 98 2.256117 AACTCCTTGTCCGTTTCAGG 57.744 50.000 0.00 0.00 0.00 3.86
98 99 3.467803 AGAAACTCCTTGTCCGTTTCAG 58.532 45.455 14.22 0.00 45.37 3.02
99 100 3.553828 AGAAACTCCTTGTCCGTTTCA 57.446 42.857 14.22 0.00 45.37 2.69
100 101 4.598062 CAAAGAAACTCCTTGTCCGTTTC 58.402 43.478 0.00 0.00 44.07 2.78
101 102 3.181490 GCAAAGAAACTCCTTGTCCGTTT 60.181 43.478 0.00 0.00 33.91 3.60
102 103 2.357952 GCAAAGAAACTCCTTGTCCGTT 59.642 45.455 0.00 0.00 0.00 4.44
103 104 1.947456 GCAAAGAAACTCCTTGTCCGT 59.053 47.619 0.00 0.00 0.00 4.69
104 105 1.266989 GGCAAAGAAACTCCTTGTCCG 59.733 52.381 0.00 0.00 0.00 4.79
105 106 1.266989 CGGCAAAGAAACTCCTTGTCC 59.733 52.381 0.00 0.00 0.00 4.02
106 107 1.266989 CCGGCAAAGAAACTCCTTGTC 59.733 52.381 0.00 0.00 0.00 3.18
107 108 1.318576 CCGGCAAAGAAACTCCTTGT 58.681 50.000 0.00 0.00 0.00 3.16
108 109 0.598065 CCCGGCAAAGAAACTCCTTG 59.402 55.000 0.00 0.00 0.00 3.61
109 110 1.179174 GCCCGGCAAAGAAACTCCTT 61.179 55.000 3.91 0.00 0.00 3.36
110 111 1.603739 GCCCGGCAAAGAAACTCCT 60.604 57.895 3.91 0.00 0.00 3.69
111 112 1.587043 GAGCCCGGCAAAGAAACTCC 61.587 60.000 13.15 0.00 0.00 3.85
112 113 0.889186 TGAGCCCGGCAAAGAAACTC 60.889 55.000 13.15 0.00 0.00 3.01
113 114 0.467290 TTGAGCCCGGCAAAGAAACT 60.467 50.000 13.15 0.00 0.00 2.66
114 115 0.387565 TTTGAGCCCGGCAAAGAAAC 59.612 50.000 13.15 0.00 32.04 2.78
115 116 1.000731 CATTTGAGCCCGGCAAAGAAA 59.999 47.619 13.15 5.00 38.48 2.52
116 117 0.602562 CATTTGAGCCCGGCAAAGAA 59.397 50.000 13.15 1.06 38.48 2.52
117 118 0.251121 TCATTTGAGCCCGGCAAAGA 60.251 50.000 13.15 0.00 38.48 2.52
118 119 0.819582 ATCATTTGAGCCCGGCAAAG 59.180 50.000 13.15 0.00 38.48 2.77
119 120 0.817013 GATCATTTGAGCCCGGCAAA 59.183 50.000 13.15 4.68 39.31 3.68
120 121 1.375853 CGATCATTTGAGCCCGGCAA 61.376 55.000 13.15 0.00 0.00 4.52
121 122 1.819208 CGATCATTTGAGCCCGGCA 60.819 57.895 13.15 0.00 0.00 5.69
122 123 3.025619 CGATCATTTGAGCCCGGC 58.974 61.111 0.00 0.00 0.00 6.13
123 124 1.779025 CTGCGATCATTTGAGCCCGG 61.779 60.000 0.00 0.00 0.00 5.73
124 125 0.811219 TCTGCGATCATTTGAGCCCG 60.811 55.000 0.00 0.00 0.00 6.13
125 126 1.266175 CATCTGCGATCATTTGAGCCC 59.734 52.381 0.00 0.00 0.00 5.19
126 127 2.216046 TCATCTGCGATCATTTGAGCC 58.784 47.619 0.00 0.00 0.00 4.70
127 128 3.064408 TGTTCATCTGCGATCATTTGAGC 59.936 43.478 0.00 0.00 0.00 4.26
128 129 4.331992 ACTGTTCATCTGCGATCATTTGAG 59.668 41.667 0.00 0.00 0.00 3.02
129 130 4.256110 ACTGTTCATCTGCGATCATTTGA 58.744 39.130 0.00 0.00 0.00 2.69
130 131 4.611310 ACTGTTCATCTGCGATCATTTG 57.389 40.909 0.00 0.00 0.00 2.32
131 132 6.372659 ACTTTACTGTTCATCTGCGATCATTT 59.627 34.615 0.00 0.00 0.00 2.32
132 133 5.877012 ACTTTACTGTTCATCTGCGATCATT 59.123 36.000 0.00 0.00 0.00 2.57
133 134 5.423015 ACTTTACTGTTCATCTGCGATCAT 58.577 37.500 0.00 0.00 0.00 2.45
134 135 4.820897 ACTTTACTGTTCATCTGCGATCA 58.179 39.130 0.00 0.00 0.00 2.92
135 136 4.864806 TGACTTTACTGTTCATCTGCGATC 59.135 41.667 0.00 0.00 0.00 3.69
136 137 4.820897 TGACTTTACTGTTCATCTGCGAT 58.179 39.130 0.00 0.00 0.00 4.58
137 138 4.251543 TGACTTTACTGTTCATCTGCGA 57.748 40.909 0.00 0.00 0.00 5.10
138 139 4.686091 TCTTGACTTTACTGTTCATCTGCG 59.314 41.667 0.00 0.00 0.00 5.18
139 140 6.545504 TTCTTGACTTTACTGTTCATCTGC 57.454 37.500 0.00 0.00 0.00 4.26
140 141 9.956720 ATTTTTCTTGACTTTACTGTTCATCTG 57.043 29.630 0.00 0.00 0.00 2.90
141 142 9.956720 CATTTTTCTTGACTTTACTGTTCATCT 57.043 29.630 0.00 0.00 0.00 2.90
142 143 9.736023 ACATTTTTCTTGACTTTACTGTTCATC 57.264 29.630 0.00 0.00 0.00 2.92
144 145 9.921637 AAACATTTTTCTTGACTTTACTGTTCA 57.078 25.926 0.00 0.00 0.00 3.18
147 148 9.705290 ACAAAACATTTTTCTTGACTTTACTGT 57.295 25.926 0.00 0.00 0.00 3.55
192 193 7.256756 CATTTCTTAATGTTGGCCACAAAAA 57.743 32.000 3.88 5.38 39.50 1.94
193 194 6.857777 CATTTCTTAATGTTGGCCACAAAA 57.142 33.333 3.88 4.88 39.50 2.44
205 206 7.944061 TGGATATTGAGGCACATTTCTTAATG 58.056 34.615 0.00 0.00 45.39 1.90
206 207 8.716674 ATGGATATTGAGGCACATTTCTTAAT 57.283 30.769 0.00 0.00 0.00 1.40
207 208 7.231317 GGATGGATATTGAGGCACATTTCTTAA 59.769 37.037 0.00 0.00 0.00 1.85
208 209 6.716628 GGATGGATATTGAGGCACATTTCTTA 59.283 38.462 0.00 0.00 0.00 2.10
209 210 5.537674 GGATGGATATTGAGGCACATTTCTT 59.462 40.000 0.00 0.00 0.00 2.52
210 211 5.075493 GGATGGATATTGAGGCACATTTCT 58.925 41.667 0.00 0.00 0.00 2.52
211 212 4.828939 TGGATGGATATTGAGGCACATTTC 59.171 41.667 0.00 0.00 0.00 2.17
212 213 4.806892 TGGATGGATATTGAGGCACATTT 58.193 39.130 0.00 0.00 0.00 2.32
213 214 4.458256 TGGATGGATATTGAGGCACATT 57.542 40.909 0.00 0.00 0.00 2.71
214 215 4.458256 TTGGATGGATATTGAGGCACAT 57.542 40.909 0.00 0.00 0.00 3.21
215 216 3.949586 TTGGATGGATATTGAGGCACA 57.050 42.857 0.00 0.00 0.00 4.57
216 217 5.359009 CCATATTGGATGGATATTGAGGCAC 59.641 44.000 0.00 0.00 40.96 5.01
217 218 5.015497 ACCATATTGGATGGATATTGAGGCA 59.985 40.000 10.52 0.00 40.96 4.75
218 219 5.513233 ACCATATTGGATGGATATTGAGGC 58.487 41.667 10.52 0.00 40.96 4.70
219 220 7.123247 GGAAACCATATTGGATGGATATTGAGG 59.877 40.741 10.52 0.00 40.96 3.86
220 221 8.059798 GGAAACCATATTGGATGGATATTGAG 57.940 38.462 10.52 0.00 40.96 3.02
240 241 3.228188 TGGCATATCATGAGGGGAAAC 57.772 47.619 0.09 0.00 0.00 2.78
244 245 3.234234 AGTTTGGCATATCATGAGGGG 57.766 47.619 0.09 0.00 0.00 4.79
277 278 6.321181 ACAACAAACGGCATATTAGATGGATT 59.679 34.615 0.00 0.00 0.00 3.01
285 286 3.753797 TGAGCACAACAAACGGCATATTA 59.246 39.130 0.00 0.00 0.00 0.98
331 344 0.535780 TTTGCTGCCTCTGTGACTGG 60.536 55.000 0.00 0.00 0.00 4.00
354 367 1.379044 GGTCCTGGTTCTGGCCATG 60.379 63.158 5.51 0.00 37.96 3.66
358 371 2.190488 CTCCTGGTCCTGGTTCTGGC 62.190 65.000 14.11 0.00 0.00 4.85
377 395 3.567585 TGAGATCGATGTCCTCATCTCAC 59.432 47.826 18.91 0.00 45.76 3.51
393 411 2.172293 AGGAGCTTTGGGATGTGAGATC 59.828 50.000 0.00 0.00 0.00 2.75
394 412 2.092538 CAGGAGCTTTGGGATGTGAGAT 60.093 50.000 0.00 0.00 0.00 2.75
395 413 1.280133 CAGGAGCTTTGGGATGTGAGA 59.720 52.381 0.00 0.00 0.00 3.27
413 432 0.833287 CATACCCTCTCCACCCACAG 59.167 60.000 0.00 0.00 0.00 3.66
414 433 0.118346 ACATACCCTCTCCACCCACA 59.882 55.000 0.00 0.00 0.00 4.17
415 434 1.209747 GAACATACCCTCTCCACCCAC 59.790 57.143 0.00 0.00 0.00 4.61
417 436 0.837940 GGAACATACCCTCTCCACCC 59.162 60.000 0.00 0.00 0.00 4.61
549 597 0.830866 GCCCGGCAGGTAGGTATAGT 60.831 60.000 3.91 0.00 38.26 2.12
551 599 1.904865 CGCCCGGCAGGTAGGTATA 60.905 63.158 10.77 0.00 38.26 1.47
552 600 3.231736 CGCCCGGCAGGTAGGTAT 61.232 66.667 10.77 0.00 38.26 2.73
583 1429 2.507854 GGATTCCGGCCGGAGATCA 61.508 63.158 39.65 32.24 46.06 2.92
640 1517 4.096382 CCTGGTCAAAATATCCGGTTTGAG 59.904 45.833 15.94 6.98 42.72 3.02
671 1548 3.181472 ACTGCCCTCAAGAAAAAGCAAAG 60.181 43.478 0.00 0.00 0.00 2.77
673 1550 2.362077 GACTGCCCTCAAGAAAAAGCAA 59.638 45.455 0.00 0.00 0.00 3.91
675 1552 2.030451 CAGACTGCCCTCAAGAAAAAGC 60.030 50.000 0.00 0.00 0.00 3.51
676 1553 2.555757 CCAGACTGCCCTCAAGAAAAAG 59.444 50.000 0.00 0.00 0.00 2.27
680 1594 0.397941 CACCAGACTGCCCTCAAGAA 59.602 55.000 0.00 0.00 0.00 2.52
682 1596 0.321122 GACACCAGACTGCCCTCAAG 60.321 60.000 0.00 0.00 0.00 3.02
760 4132 0.392327 TTCCGGAGATGCGATGCAAA 60.392 50.000 3.34 0.00 43.62 3.68
763 4135 2.247437 GGTTCCGGAGATGCGATGC 61.247 63.158 3.34 0.00 0.00 3.91
764 4136 0.179073 AAGGTTCCGGAGATGCGATG 60.179 55.000 3.34 0.00 0.00 3.84
765 4137 0.179073 CAAGGTTCCGGAGATGCGAT 60.179 55.000 3.34 0.00 0.00 4.58
859 4334 2.182842 ATTCGATTCCTGCCAGCGC 61.183 57.895 0.00 0.00 0.00 5.92
865 4340 0.595095 GGATGGCATTCGATTCCTGC 59.405 55.000 0.00 0.00 35.16 4.85
894 4377 4.370917 GGAACGGACGGCTATTTATGTAA 58.629 43.478 0.00 0.00 0.00 2.41
915 4408 1.543944 GCTTGGATGGTTGGTTGGGG 61.544 60.000 0.00 0.00 0.00 4.96
936 5785 1.824272 AAACCGTAGTCGTTGTGCGC 61.824 55.000 0.00 0.00 41.07 6.09
937 5786 0.111442 CAAACCGTAGTCGTTGTGCG 60.111 55.000 0.00 0.00 43.01 5.34
989 5844 0.889186 GTTGTCCATGGTCGGCAGTT 60.889 55.000 12.58 0.00 0.00 3.16
1103 6435 5.297547 AGAAAACAACAGCGTATCTGAAGA 58.702 37.500 0.00 0.00 45.72 2.87
1104 6436 5.597813 AGAAAACAACAGCGTATCTGAAG 57.402 39.130 0.00 0.00 45.72 3.02
1105 6437 5.295787 ACAAGAAAACAACAGCGTATCTGAA 59.704 36.000 0.00 0.00 45.72 3.02
1108 6440 5.510671 CAACAAGAAAACAACAGCGTATCT 58.489 37.500 0.00 0.00 0.00 1.98
1109 6441 4.146443 GCAACAAGAAAACAACAGCGTATC 59.854 41.667 0.00 0.00 0.00 2.24
1114 6446 3.304293 GTCAGCAACAAGAAAACAACAGC 59.696 43.478 0.00 0.00 0.00 4.40
1115 6447 3.543494 CGTCAGCAACAAGAAAACAACAG 59.457 43.478 0.00 0.00 0.00 3.16
1116 6448 3.189495 TCGTCAGCAACAAGAAAACAACA 59.811 39.130 0.00 0.00 0.00 3.33
1117 6449 3.753842 TCGTCAGCAACAAGAAAACAAC 58.246 40.909 0.00 0.00 0.00 3.32
1118 6450 4.497340 GGATCGTCAGCAACAAGAAAACAA 60.497 41.667 0.00 0.00 0.00 2.83
1128 6460 2.029838 ATTCCTGGATCGTCAGCAAC 57.970 50.000 0.00 0.00 33.64 4.17
1141 6473 0.447801 GGCTGCACGTACAATTCCTG 59.552 55.000 0.50 0.00 0.00 3.86
1186 6539 1.648467 GCTCCATCCGGTTGAACTGC 61.648 60.000 14.27 8.31 0.00 4.40
1378 8556 2.654877 GGGAAGACGACGAGGCAA 59.345 61.111 0.00 0.00 0.00 4.52
1448 8626 1.139654 CTGCATGGAAGAGGGAATCGA 59.860 52.381 0.00 0.00 0.00 3.59
1463 8641 0.457851 GTCGTAGTGAGGCTCTGCAT 59.542 55.000 16.72 1.50 0.00 3.96
1526 9095 1.228831 CCACCATCTTGCACCCCAA 60.229 57.895 0.00 0.00 0.00 4.12
1637 9206 1.040893 TAGTGCGTGACCGGGATGAT 61.041 55.000 6.32 0.00 33.68 2.45
2058 9642 1.396301 ACTCATCGTCGTCGTCCTTAC 59.604 52.381 1.33 0.00 38.33 2.34
2059 9643 1.662629 GACTCATCGTCGTCGTCCTTA 59.337 52.381 1.33 0.00 38.33 2.69
2071 9655 1.811266 CTTGGCCGTGGACTCATCG 60.811 63.158 0.00 0.00 0.00 3.84
2158 9742 3.948735 CCAACATTGGTAGTCGGGT 57.051 52.632 2.22 0.00 43.43 5.28
2220 9836 1.418342 CGCCACGATTCGAATTCCGT 61.418 55.000 16.49 16.49 39.75 4.69
2234 9850 1.950630 CACCAAGCAAAAGCGCCAC 60.951 57.895 2.29 0.00 0.00 5.01
2245 9861 3.507233 TCTTTTCATCATCACCACCAAGC 59.493 43.478 0.00 0.00 0.00 4.01
2357 9995 4.116747 ACAAAACTGTTCCATCGCAAAA 57.883 36.364 0.00 0.00 0.00 2.44
2361 9999 3.862845 ACAAAACAAAACTGTTCCATCGC 59.137 39.130 0.00 0.00 0.00 4.58
2362 10000 5.574830 TCAACAAAACAAAACTGTTCCATCG 59.425 36.000 0.00 0.00 30.99 3.84
2363 10001 6.959671 TCAACAAAACAAAACTGTTCCATC 57.040 33.333 0.00 0.00 30.99 3.51
2364 10002 6.934083 ACTTCAACAAAACAAAACTGTTCCAT 59.066 30.769 0.00 0.00 30.99 3.41
2365 10003 6.284459 ACTTCAACAAAACAAAACTGTTCCA 58.716 32.000 0.00 0.00 30.99 3.53
2366 10004 6.779115 ACTTCAACAAAACAAAACTGTTCC 57.221 33.333 0.00 0.00 30.99 3.62
2370 10008 9.049974 GCAAATTACTTCAACAAAACAAAACTG 57.950 29.630 0.00 0.00 0.00 3.16
2371 10009 8.233868 GGCAAATTACTTCAACAAAACAAAACT 58.766 29.630 0.00 0.00 0.00 2.66
2372 10010 8.233868 AGGCAAATTACTTCAACAAAACAAAAC 58.766 29.630 0.00 0.00 0.00 2.43
2373 10011 8.233190 CAGGCAAATTACTTCAACAAAACAAAA 58.767 29.630 0.00 0.00 0.00 2.44
2374 10012 7.148340 CCAGGCAAATTACTTCAACAAAACAAA 60.148 33.333 0.00 0.00 0.00 2.83
2375 10013 6.314896 CCAGGCAAATTACTTCAACAAAACAA 59.685 34.615 0.00 0.00 0.00 2.83
2376 10014 5.814705 CCAGGCAAATTACTTCAACAAAACA 59.185 36.000 0.00 0.00 0.00 2.83
2377 10015 6.045955 TCCAGGCAAATTACTTCAACAAAAC 58.954 36.000 0.00 0.00 0.00 2.43
2378 10016 6.227298 TCCAGGCAAATTACTTCAACAAAA 57.773 33.333 0.00 0.00 0.00 2.44
2379 10017 5.860941 TCCAGGCAAATTACTTCAACAAA 57.139 34.783 0.00 0.00 0.00 2.83
2380 10018 6.418057 AATCCAGGCAAATTACTTCAACAA 57.582 33.333 0.00 0.00 0.00 2.83
2381 10019 6.041409 TGAAATCCAGGCAAATTACTTCAACA 59.959 34.615 0.00 0.00 0.00 3.33
2382 10020 6.454795 TGAAATCCAGGCAAATTACTTCAAC 58.545 36.000 0.00 0.00 0.00 3.18
2383 10021 6.662865 TGAAATCCAGGCAAATTACTTCAA 57.337 33.333 0.00 0.00 0.00 2.69
2384 10022 6.662865 TTGAAATCCAGGCAAATTACTTCA 57.337 33.333 0.00 0.00 0.00 3.02
2392 10031 4.837860 ACCTACATTTGAAATCCAGGCAAA 59.162 37.500 12.11 0.00 36.15 3.68
2400 10039 8.810427 TCGAATTACGTACCTACATTTGAAATC 58.190 33.333 0.00 0.00 43.13 2.17
2412 10051 6.536224 CCCAAACTAAATCGAATTACGTACCT 59.464 38.462 0.00 0.00 43.13 3.08
2416 10539 6.427547 TGTTCCCAAACTAAATCGAATTACGT 59.572 34.615 0.00 0.00 38.47 3.57
2417 10540 6.833839 TGTTCCCAAACTAAATCGAATTACG 58.166 36.000 0.00 0.00 38.58 3.18
2418 10541 9.124807 CTTTGTTCCCAAACTAAATCGAATTAC 57.875 33.333 0.00 0.00 35.67 1.89
2419 10542 9.069082 TCTTTGTTCCCAAACTAAATCGAATTA 57.931 29.630 0.00 0.00 35.67 1.40
2420 10543 7.947282 TCTTTGTTCCCAAACTAAATCGAATT 58.053 30.769 0.00 0.00 35.67 2.17
2430 10553 3.500343 CCTCCATCTTTGTTCCCAAACT 58.500 45.455 0.00 0.00 35.67 2.66
2472 11022 0.537188 GTTCTGATTCCCTCGCCTCA 59.463 55.000 0.00 0.00 0.00 3.86
2474 11024 1.517832 CGTTCTGATTCCCTCGCCT 59.482 57.895 0.00 0.00 0.00 5.52
2478 11028 2.632377 TCATTGCGTTCTGATTCCCTC 58.368 47.619 0.00 0.00 0.00 4.30
2479 11029 2.787473 TCATTGCGTTCTGATTCCCT 57.213 45.000 0.00 0.00 0.00 4.20
2483 11033 2.421424 GCCTCTTCATTGCGTTCTGATT 59.579 45.455 0.00 0.00 0.00 2.57
2484 11034 2.012673 GCCTCTTCATTGCGTTCTGAT 58.987 47.619 0.00 0.00 0.00 2.90
2485 11035 1.270785 TGCCTCTTCATTGCGTTCTGA 60.271 47.619 0.00 0.00 0.00 3.27
2486 11036 1.159285 TGCCTCTTCATTGCGTTCTG 58.841 50.000 0.00 0.00 0.00 3.02
2487 11037 1.896220 TTGCCTCTTCATTGCGTTCT 58.104 45.000 0.00 0.00 0.00 3.01
2488 11038 2.704725 TTTGCCTCTTCATTGCGTTC 57.295 45.000 0.00 0.00 0.00 3.95
2489 11039 2.362077 AGTTTTGCCTCTTCATTGCGTT 59.638 40.909 0.00 0.00 0.00 4.84
2490 11040 1.956477 AGTTTTGCCTCTTCATTGCGT 59.044 42.857 0.00 0.00 0.00 5.24
2504 13087 2.282290 CGGCAACTCTTTTGCAGTTTTG 59.718 45.455 10.90 0.00 46.58 2.44
2505 13088 2.165437 TCGGCAACTCTTTTGCAGTTTT 59.835 40.909 10.90 0.00 46.58 2.43
2508 13091 0.663153 GTCGGCAACTCTTTTGCAGT 59.337 50.000 10.90 0.00 46.58 4.40
2510 13093 1.098869 TTGTCGGCAACTCTTTTGCA 58.901 45.000 0.00 0.00 46.58 4.08
2511 13094 3.936585 TTGTCGGCAACTCTTTTGC 57.063 47.368 0.00 0.17 44.22 3.68
2521 13104 2.560981 TCTCTATGAAGTGTTGTCGGCA 59.439 45.455 0.00 0.00 0.00 5.69
2522 13105 3.232213 TCTCTATGAAGTGTTGTCGGC 57.768 47.619 0.00 0.00 0.00 5.54
2523 13106 3.553511 GCATCTCTATGAAGTGTTGTCGG 59.446 47.826 0.00 0.00 34.84 4.79
2564 14507 5.172411 CACGTTGTTAACCTTATTGTGCAAC 59.828 40.000 2.48 0.00 33.74 4.17
2703 14761 1.254026 GCTTACCTGGTTGGGGTTTC 58.746 55.000 3.84 0.00 41.11 2.78
2713 14771 2.026822 ACTTGGTGAGATGCTTACCTGG 60.027 50.000 9.39 0.00 40.27 4.45
2780 16204 5.574188 AGCCTACAGAAGAAAATCATTGGT 58.426 37.500 0.00 0.00 0.00 3.67
2883 16307 5.239306 TCAATGATTCTTGTCAGCGAGTTTT 59.761 36.000 0.00 0.00 0.00 2.43
2912 16336 4.200838 AGAGAAGGCTAAGCTCAAGAAC 57.799 45.455 12.54 0.00 0.00 3.01
3006 16430 6.970484 AGACGTGCTTTAGAAATTTGATGTT 58.030 32.000 0.00 0.00 0.00 2.71
3011 16435 9.445786 TTTTAGAAGACGTGCTTTAGAAATTTG 57.554 29.630 0.00 0.00 36.83 2.32
3025 16449 7.927048 AGTGTTTGCTTATTTTTAGAAGACGT 58.073 30.769 0.00 0.00 0.00 4.34
3105 16529 2.345760 GGCGTCCGGACTTGAGGTA 61.346 63.158 30.92 0.00 0.00 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.