Multiple sequence alignment - TraesCS3D01G065300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G065300 chr3D 100.000 4110 0 0 1 4110 28732212 28736321 0.000000e+00 7590.0
1 TraesCS3D01G065300 chr3D 99.132 2188 16 2 1425 3611 28744932 28747117 0.000000e+00 3932.0
2 TraesCS3D01G065300 chr3D 100.000 701 0 0 1 701 28743205 28743905 0.000000e+00 1295.0
3 TraesCS3D01G065300 chr3D 91.765 170 3 1 3609 3778 28747481 28747639 4.130000e-55 226.0
4 TraesCS3D01G065300 chr3D 83.071 254 8 7 3776 4028 28747752 28747971 9.010000e-47 198.0
5 TraesCS3D01G065300 chr3D 93.846 65 4 0 4028 4092 28868699 28868763 9.400000e-17 99.0
6 TraesCS3D01G065300 chr3B 96.567 3379 67 9 1 3373 48027619 48024284 0.000000e+00 5552.0
7 TraesCS3D01G065300 chr3B 97.009 2775 40 9 604 3373 47684003 47681267 0.000000e+00 4625.0
8 TraesCS3D01G065300 chr3B 95.224 2764 73 22 876 3608 49116451 49119186 0.000000e+00 4318.0
9 TraesCS3D01G065300 chr3B 96.284 619 23 0 1 619 47684637 47684019 0.000000e+00 1016.0
10 TraesCS3D01G065300 chr3B 91.176 374 21 6 876 1246 47701308 47700944 7.930000e-137 497.0
11 TraesCS3D01G065300 chr3B 91.176 374 22 5 876 1246 47830488 47830123 7.930000e-137 497.0
12 TraesCS3D01G065300 chr3B 90.642 374 24 4 876 1246 47696171 47695806 1.720000e-133 486.0
13 TraesCS3D01G065300 chr3B 90.642 374 24 4 876 1246 48101153 48100788 1.720000e-133 486.0
14 TraesCS3D01G065300 chr3B 90.374 374 25 7 876 1246 48039172 48038807 7.990000e-132 481.0
15 TraesCS3D01G065300 chr3B 95.436 241 10 1 3372 3611 47681185 47680945 2.320000e-102 383.0
16 TraesCS3D01G065300 chr3B 95.021 241 11 1 3372 3611 48024202 48023962 1.080000e-100 377.0
17 TraesCS3D01G065300 chr3B 96.791 187 4 2 3609 3793 49119571 49119757 1.110000e-80 311.0
18 TraesCS3D01G065300 chr3B 95.722 187 6 2 3609 3793 48023574 48023388 2.400000e-77 300.0
19 TraesCS3D01G065300 chr3B 94.652 187 8 2 3609 3793 47680553 47680367 5.200000e-74 289.0
20 TraesCS3D01G065300 chr3B 85.827 127 7 3 622 748 49116274 49116389 1.550000e-24 124.0
21 TraesCS3D01G065300 chr3B 95.588 68 3 0 4025 4092 47543398 47543465 4.340000e-20 110.0
22 TraesCS3D01G065300 chr3B 90.769 65 5 1 4028 4092 49151669 49151606 7.320000e-13 86.1
23 TraesCS3D01G065300 chr3B 83.077 65 5 4 587 647 49116251 49116189 2.000000e-03 54.7
24 TraesCS3D01G065300 chr3A 94.373 2186 75 8 1438 3611 38290753 38288604 0.000000e+00 3312.0
25 TraesCS3D01G065300 chr3A 81.562 461 65 17 281 735 38293035 38292589 3.020000e-96 363.0
26 TraesCS3D01G065300 chr3A 84.071 226 9 3 3807 4028 38288492 38288290 4.190000e-45 193.0
27 TraesCS3D01G065300 chr3A 96.190 105 4 0 1209 1313 38292242 38292138 5.460000e-39 172.0
28 TraesCS3D01G065300 chr3A 97.059 68 1 1 4025 4092 38282256 38282322 3.360000e-21 113.0
29 TraesCS3D01G065300 chr6B 95.296 1977 63 5 1636 3611 131222536 131220589 0.000000e+00 3109.0
30 TraesCS3D01G065300 chr6B 95.434 876 25 6 706 1579 131223395 131222533 0.000000e+00 1382.0
31 TraesCS3D01G065300 chr6B 91.449 421 15 9 3609 4028 131220212 131219812 3.590000e-155 558.0
32 TraesCS3D01G065300 chr6B 87.558 217 20 2 307 523 131287880 131287671 1.140000e-60 244.0
33 TraesCS3D01G065300 chr2D 85.046 2073 209 37 1210 3254 648385899 648387898 0.000000e+00 2017.0
34 TraesCS3D01G065300 chrUn 84.796 1276 148 22 1210 2464 30962032 30960782 0.000000e+00 1240.0
35 TraesCS3D01G065300 chrUn 95.611 319 9 2 3055 3373 479036147 479036460 1.320000e-139 507.0
36 TraesCS3D01G065300 chr6D 89.474 57 5 1 531 587 110214531 110214476 2.050000e-08 71.3
37 TraesCS3D01G065300 chr2A 91.304 46 4 0 2787 2832 138526707 138526662 3.430000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G065300 chr3D 28732212 28736321 4109 False 7590.000000 7590 100.000000 1 4110 1 chr3D.!!$F1 4109
1 TraesCS3D01G065300 chr3D 28743205 28747971 4766 False 1412.750000 3932 93.492000 1 4028 4 chr3D.!!$F3 4027
2 TraesCS3D01G065300 chr3B 48023388 48027619 4231 True 2076.333333 5552 95.770000 1 3793 3 chr3B.!!$R9 3792
3 TraesCS3D01G065300 chr3B 49116274 49119757 3483 False 1584.333333 4318 92.614000 622 3793 3 chr3B.!!$F2 3171
4 TraesCS3D01G065300 chr3B 47680367 47684637 4270 True 1578.250000 4625 95.845250 1 3793 4 chr3B.!!$R8 3792
5 TraesCS3D01G065300 chr3A 38288290 38293035 4745 True 1010.000000 3312 89.049000 281 4028 4 chr3A.!!$R1 3747
6 TraesCS3D01G065300 chr6B 131219812 131223395 3583 True 1683.000000 3109 94.059667 706 4028 3 chr6B.!!$R2 3322
7 TraesCS3D01G065300 chr2D 648385899 648387898 1999 False 2017.000000 2017 85.046000 1210 3254 1 chr2D.!!$F1 2044
8 TraesCS3D01G065300 chrUn 30960782 30962032 1250 True 1240.000000 1240 84.796000 1210 2464 1 chrUn.!!$R1 1254

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
752 787 1.149288 ACCTTGTGTGGACTAGAGGGA 59.851 52.381 0.00 0.0 0.00 4.20 F
756 791 1.361197 TGTGTGGACTAGAGGGATCCA 59.639 52.381 15.23 0.0 40.27 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
3034 4760 1.355720 ACCTCTGGTTCATCCCTTTGG 59.644 52.381 0.0 0.0 27.29 3.28 R
3235 4964 7.914427 TCAGTCATAGTTGGACAGGTTATAT 57.086 36.000 0.0 0.0 37.74 0.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
748 783 5.818678 ATAACAACCTTGTGTGGACTAGA 57.181 39.130 0.00 0.00 41.31 2.43
750 785 2.368875 ACAACCTTGTGTGGACTAGAGG 59.631 50.000 0.00 0.00 40.49 3.69
751 786 1.645710 ACCTTGTGTGGACTAGAGGG 58.354 55.000 0.00 0.00 0.00 4.30
752 787 1.149288 ACCTTGTGTGGACTAGAGGGA 59.851 52.381 0.00 0.00 0.00 4.20
753 788 2.225650 ACCTTGTGTGGACTAGAGGGAT 60.226 50.000 0.00 0.00 0.00 3.85
756 791 1.361197 TGTGTGGACTAGAGGGATCCA 59.639 52.381 15.23 0.00 40.27 3.41
757 792 2.023015 TGTGTGGACTAGAGGGATCCAT 60.023 50.000 15.23 6.26 44.21 3.41
759 794 2.252714 GTGGACTAGAGGGATCCATCC 58.747 57.143 22.47 13.63 44.21 3.51
767 802 4.085876 GGATCCATCCCATTGGCG 57.914 61.111 6.95 0.00 41.20 5.69
768 803 1.604593 GGATCCATCCCATTGGCGG 60.605 63.158 6.95 0.00 41.20 6.13
3034 4760 1.165270 CGGGTGTTGACAGGGATTTC 58.835 55.000 0.00 0.00 0.00 2.17
3235 4964 8.246871 GCATCTGCATCGGATTAGCTATATATA 58.753 37.037 0.00 0.00 41.59 0.86
3265 4994 3.261643 TGTCCAACTATGACTGATGCACT 59.738 43.478 0.00 0.00 33.83 4.40
3600 5416 7.078851 TGTTTTCATCATGCAATGCAATTTTC 58.921 30.769 13.45 0.00 46.21 2.29
3601 5417 7.041030 TGTTTTCATCATGCAATGCAATTTTCT 60.041 29.630 13.45 0.00 46.21 2.52
3603 5419 6.656314 TCATCATGCAATGCAATTTTCTTC 57.344 33.333 13.45 0.00 46.21 2.87
3605 5421 5.155278 TCATGCAATGCAATTTTCTTCCT 57.845 34.783 13.45 0.00 46.21 3.36
3607 5423 6.699366 TCATGCAATGCAATTTTCTTCCTTA 58.301 32.000 13.45 0.00 46.21 2.69
3802 6130 3.808466 TCTGGTAGCATAGCTGACTTG 57.192 47.619 0.00 0.00 41.14 3.16
3803 6131 3.099905 TCTGGTAGCATAGCTGACTTGT 58.900 45.455 0.00 0.00 41.14 3.16
3804 6132 4.278310 TCTGGTAGCATAGCTGACTTGTA 58.722 43.478 0.00 0.00 41.14 2.41
3805 6133 4.098044 TCTGGTAGCATAGCTGACTTGTAC 59.902 45.833 0.00 0.00 41.14 2.90
3846 6174 6.319141 ACCTGCTTTCTTGTCTGATTAAAC 57.681 37.500 0.00 0.00 0.00 2.01
3849 6177 6.205464 CCTGCTTTCTTGTCTGATTAAACAGA 59.795 38.462 11.09 11.09 43.39 3.41
3850 6178 7.194607 TGCTTTCTTGTCTGATTAAACAGAG 57.805 36.000 15.06 5.14 45.67 3.35
3851 6179 6.767902 TGCTTTCTTGTCTGATTAAACAGAGT 59.232 34.615 15.06 0.00 45.67 3.24
3852 6180 7.931407 TGCTTTCTTGTCTGATTAAACAGAGTA 59.069 33.333 15.06 5.75 45.67 2.59
3853 6181 8.224437 GCTTTCTTGTCTGATTAAACAGAGTAC 58.776 37.037 15.06 6.00 45.67 2.73
3854 6182 9.261180 CTTTCTTGTCTGATTAAACAGAGTACA 57.739 33.333 15.06 8.35 45.67 2.90
3855 6183 8.818141 TTCTTGTCTGATTAAACAGAGTACAG 57.182 34.615 15.06 9.09 45.67 2.74
3856 6184 7.952671 TCTTGTCTGATTAAACAGAGTACAGT 58.047 34.615 15.06 0.00 45.67 3.55
3857 6185 8.082852 TCTTGTCTGATTAAACAGAGTACAGTC 58.917 37.037 15.06 3.54 45.67 3.51
3883 6220 7.661847 CAGTAGTCTGGTTTTACTCAAGGAAAT 59.338 37.037 0.00 0.00 37.97 2.17
3889 6226 8.215050 TCTGGTTTTACTCAAGGAAATAAGTGA 58.785 33.333 0.00 0.00 0.00 3.41
3890 6227 8.754991 TGGTTTTACTCAAGGAAATAAGTGAA 57.245 30.769 0.00 0.00 0.00 3.18
3891 6228 9.362151 TGGTTTTACTCAAGGAAATAAGTGAAT 57.638 29.630 0.00 0.00 0.00 2.57
3898 6235 9.232473 ACTCAAGGAAATAAGTGAATTTACCTC 57.768 33.333 0.00 0.00 31.07 3.85
3899 6236 8.263940 TCAAGGAAATAAGTGAATTTACCTCG 57.736 34.615 0.00 0.00 31.07 4.63
3900 6237 8.098286 TCAAGGAAATAAGTGAATTTACCTCGA 58.902 33.333 0.00 0.00 31.07 4.04
3901 6238 8.391106 CAAGGAAATAAGTGAATTTACCTCGAG 58.609 37.037 5.13 5.13 31.07 4.04
3902 6239 7.048512 AGGAAATAAGTGAATTTACCTCGAGG 58.951 38.462 30.11 30.11 42.17 4.63
3903 6240 7.046033 GGAAATAAGTGAATTTACCTCGAGGA 58.954 38.462 37.69 16.59 38.94 3.71
3911 6248 5.699458 TGAATTTACCTCGAGGAAACAAGTC 59.301 40.000 37.69 26.67 38.94 3.01
3944 6289 1.476488 GTGCATGACGCCCCTTATTTT 59.524 47.619 0.00 0.00 41.33 1.82
3988 6337 8.229253 TGATAAATTAGCGTCCAGTAAGTAGA 57.771 34.615 0.00 0.00 0.00 2.59
4028 6377 5.924825 AGTCGTGTGTAAACTGAAGTTATCC 59.075 40.000 0.00 0.00 37.25 2.59
4029 6378 5.924825 GTCGTGTGTAAACTGAAGTTATCCT 59.075 40.000 0.00 0.00 37.25 3.24
4030 6379 6.089150 GTCGTGTGTAAACTGAAGTTATCCTC 59.911 42.308 0.00 0.00 37.25 3.71
4031 6380 5.924254 CGTGTGTAAACTGAAGTTATCCTCA 59.076 40.000 0.00 0.00 37.25 3.86
4032 6381 6.422701 CGTGTGTAAACTGAAGTTATCCTCAA 59.577 38.462 0.00 0.00 37.25 3.02
4033 6382 7.568861 CGTGTGTAAACTGAAGTTATCCTCAAC 60.569 40.741 0.00 0.00 37.25 3.18
4034 6383 7.225931 GTGTGTAAACTGAAGTTATCCTCAACA 59.774 37.037 0.00 0.00 37.25 3.33
4035 6384 7.936847 TGTGTAAACTGAAGTTATCCTCAACAT 59.063 33.333 0.00 0.00 37.25 2.71
4036 6385 9.431887 GTGTAAACTGAAGTTATCCTCAACATA 57.568 33.333 0.00 0.00 37.25 2.29
4037 6386 9.431887 TGTAAACTGAAGTTATCCTCAACATAC 57.568 33.333 0.00 0.00 37.25 2.39
4038 6387 9.431887 GTAAACTGAAGTTATCCTCAACATACA 57.568 33.333 0.00 0.00 37.25 2.29
4039 6388 7.907214 AACTGAAGTTATCCTCAACATACAC 57.093 36.000 0.00 0.00 36.32 2.90
4040 6389 6.407202 ACTGAAGTTATCCTCAACATACACC 58.593 40.000 0.00 0.00 0.00 4.16
4041 6390 5.741011 TGAAGTTATCCTCAACATACACCC 58.259 41.667 0.00 0.00 0.00 4.61
4042 6391 5.249622 TGAAGTTATCCTCAACATACACCCA 59.750 40.000 0.00 0.00 0.00 4.51
4043 6392 5.099042 AGTTATCCTCAACATACACCCAC 57.901 43.478 0.00 0.00 0.00 4.61
4044 6393 4.080526 AGTTATCCTCAACATACACCCACC 60.081 45.833 0.00 0.00 0.00 4.61
4045 6394 0.611200 TCCTCAACATACACCCACCG 59.389 55.000 0.00 0.00 0.00 4.94
4046 6395 0.392461 CCTCAACATACACCCACCGG 60.392 60.000 0.00 0.00 0.00 5.28
4047 6396 0.323629 CTCAACATACACCCACCGGT 59.676 55.000 0.00 0.00 46.31 5.28
4048 6397 0.766131 TCAACATACACCCACCGGTT 59.234 50.000 2.97 0.00 42.04 4.44
4049 6398 0.878416 CAACATACACCCACCGGTTG 59.122 55.000 2.97 3.08 42.04 3.77
4050 6399 0.891904 AACATACACCCACCGGTTGC 60.892 55.000 2.97 0.00 42.04 4.17
4051 6400 1.002624 CATACACCCACCGGTTGCT 60.003 57.895 2.97 0.00 42.04 3.91
4052 6401 0.608035 CATACACCCACCGGTTGCTT 60.608 55.000 2.97 0.00 42.04 3.91
4053 6402 0.111639 ATACACCCACCGGTTGCTTT 59.888 50.000 2.97 0.00 42.04 3.51
4054 6403 0.106619 TACACCCACCGGTTGCTTTT 60.107 50.000 2.97 0.00 42.04 2.27
4055 6404 0.973496 ACACCCACCGGTTGCTTTTT 60.973 50.000 2.97 0.00 42.04 1.94
4056 6405 0.529555 CACCCACCGGTTGCTTTTTG 60.530 55.000 2.97 0.00 42.04 2.44
4057 6406 1.594021 CCCACCGGTTGCTTTTTGC 60.594 57.895 2.97 0.00 43.25 3.68
4072 6421 6.892310 GCTTTTTGCAGAAAGAAAAAGAGA 57.108 33.333 28.50 0.00 45.74 3.10
4073 6422 7.474398 GCTTTTTGCAGAAAGAAAAAGAGAT 57.526 32.000 28.50 0.00 45.74 2.75
4074 6423 7.342942 GCTTTTTGCAGAAAGAAAAAGAGATG 58.657 34.615 28.50 3.84 45.74 2.90
4075 6424 7.223387 GCTTTTTGCAGAAAGAAAAAGAGATGA 59.777 33.333 28.50 0.00 45.74 2.92
4076 6425 9.257651 CTTTTTGCAGAAAGAAAAAGAGATGAT 57.742 29.630 21.91 0.00 45.74 2.45
4077 6426 8.583810 TTTTGCAGAAAGAAAAAGAGATGATG 57.416 30.769 0.00 0.00 29.56 3.07
4078 6427 7.514784 TTGCAGAAAGAAAAAGAGATGATGA 57.485 32.000 0.00 0.00 0.00 2.92
4079 6428 7.142306 TGCAGAAAGAAAAAGAGATGATGAG 57.858 36.000 0.00 0.00 0.00 2.90
4080 6429 6.938596 TGCAGAAAGAAAAAGAGATGATGAGA 59.061 34.615 0.00 0.00 0.00 3.27
4081 6430 7.446319 TGCAGAAAGAAAAAGAGATGATGAGAA 59.554 33.333 0.00 0.00 0.00 2.87
4082 6431 7.750014 GCAGAAAGAAAAAGAGATGATGAGAAC 59.250 37.037 0.00 0.00 0.00 3.01
4083 6432 8.781196 CAGAAAGAAAAAGAGATGATGAGAACA 58.219 33.333 0.00 0.00 0.00 3.18
4084 6433 9.001542 AGAAAGAAAAAGAGATGATGAGAACAG 57.998 33.333 0.00 0.00 0.00 3.16
4085 6434 8.915057 AAAGAAAAAGAGATGATGAGAACAGA 57.085 30.769 0.00 0.00 0.00 3.41
4086 6435 9.517868 AAAGAAAAAGAGATGATGAGAACAGAT 57.482 29.630 0.00 0.00 0.00 2.90
4088 6437 9.598517 AGAAAAAGAGATGATGAGAACAGATAC 57.401 33.333 0.00 0.00 0.00 2.24
4089 6438 9.598517 GAAAAAGAGATGATGAGAACAGATACT 57.401 33.333 0.00 0.00 0.00 2.12
4090 6439 9.598517 AAAAAGAGATGATGAGAACAGATACTC 57.401 33.333 0.00 0.00 0.00 2.59
4091 6440 8.537728 AAAGAGATGATGAGAACAGATACTCT 57.462 34.615 0.00 0.00 34.65 3.24
4092 6441 8.537728 AAGAGATGATGAGAACAGATACTCTT 57.462 34.615 0.00 0.00 36.57 2.85
4093 6442 8.537728 AGAGATGATGAGAACAGATACTCTTT 57.462 34.615 0.00 0.00 34.65 2.52
4094 6443 8.415553 AGAGATGATGAGAACAGATACTCTTTG 58.584 37.037 0.00 0.00 34.65 2.77
4095 6444 8.076910 AGATGATGAGAACAGATACTCTTTGT 57.923 34.615 0.00 0.00 34.65 2.83
4096 6445 8.538701 AGATGATGAGAACAGATACTCTTTGTT 58.461 33.333 0.00 0.00 37.72 2.83
4097 6446 9.809096 GATGATGAGAACAGATACTCTTTGTTA 57.191 33.333 0.00 0.00 35.35 2.41
4099 6448 9.996554 TGATGAGAACAGATACTCTTTGTTAAA 57.003 29.630 0.00 0.00 35.35 1.52
4102 6451 9.832445 TGAGAACAGATACTCTTTGTTAAAACT 57.168 29.630 0.00 0.00 35.35 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
750 785 1.604593 CCGCCAATGGGATGGATCC 60.605 63.158 4.20 4.20 43.54 3.36
751 786 4.085876 CCGCCAATGGGATGGATC 57.914 61.111 0.00 0.00 43.54 3.36
3034 4760 1.355720 ACCTCTGGTTCATCCCTTTGG 59.644 52.381 0.00 0.00 27.29 3.28
3235 4964 7.914427 TCAGTCATAGTTGGACAGGTTATAT 57.086 36.000 0.00 0.00 37.74 0.86
3236 4965 7.686859 GCATCAGTCATAGTTGGACAGGTTATA 60.687 40.741 0.00 0.00 37.74 0.98
3265 4994 3.511934 ACAACCAAACAAACAGTTGCCTA 59.488 39.130 0.00 0.00 42.61 3.93
3328 5057 7.066163 CAGACCATAGCAGATTAATCAACACAA 59.934 37.037 17.56 0.00 0.00 3.33
3592 5408 5.829233 GTGCAACTAAGGAAGAAAATTGC 57.171 39.130 0.00 0.00 40.99 3.56
3802 6130 7.416022 CAGGTAGTAGCAGTACAATACAGTAC 58.584 42.308 1.58 0.00 43.61 2.73
3803 6131 6.039047 GCAGGTAGTAGCAGTACAATACAGTA 59.961 42.308 1.58 0.00 0.00 2.74
3804 6132 5.163540 GCAGGTAGTAGCAGTACAATACAGT 60.164 44.000 1.58 0.00 0.00 3.55
3805 6133 5.067936 AGCAGGTAGTAGCAGTACAATACAG 59.932 44.000 1.58 0.00 0.00 2.74
3846 6174 4.328536 ACCAGACTACTGACTGTACTCTG 58.671 47.826 15.87 15.87 46.03 3.35
3849 6177 6.776603 AGTAAAACCAGACTACTGACTGTACT 59.223 38.462 0.00 0.00 46.03 2.73
3850 6178 6.979465 AGTAAAACCAGACTACTGACTGTAC 58.021 40.000 0.00 0.00 46.03 2.90
3851 6179 6.774170 TGAGTAAAACCAGACTACTGACTGTA 59.226 38.462 0.00 0.00 46.03 2.74
3852 6180 5.597182 TGAGTAAAACCAGACTACTGACTGT 59.403 40.000 0.00 0.00 46.03 3.55
3853 6181 6.085555 TGAGTAAAACCAGACTACTGACTG 57.914 41.667 0.00 0.00 46.03 3.51
3854 6182 6.239345 CCTTGAGTAAAACCAGACTACTGACT 60.239 42.308 0.00 0.00 46.03 3.41
3855 6183 5.927115 CCTTGAGTAAAACCAGACTACTGAC 59.073 44.000 0.00 0.00 46.03 3.51
3856 6184 5.836898 TCCTTGAGTAAAACCAGACTACTGA 59.163 40.000 0.00 0.00 46.03 3.41
3857 6185 6.097915 TCCTTGAGTAAAACCAGACTACTG 57.902 41.667 0.00 0.00 43.12 2.74
3883 6220 6.761312 TGTTTCCTCGAGGTAAATTCACTTA 58.239 36.000 30.17 4.05 36.34 2.24
3889 6226 5.617252 TGACTTGTTTCCTCGAGGTAAATT 58.383 37.500 30.17 14.24 36.34 1.82
3890 6227 5.223449 TGACTTGTTTCCTCGAGGTAAAT 57.777 39.130 30.17 13.43 36.34 1.40
3891 6228 4.675976 TGACTTGTTTCCTCGAGGTAAA 57.324 40.909 30.17 23.66 36.34 2.01
3892 6229 4.675976 TTGACTTGTTTCCTCGAGGTAA 57.324 40.909 30.17 24.31 36.34 2.85
3893 6230 4.884668 ATTGACTTGTTTCCTCGAGGTA 57.115 40.909 30.17 19.48 36.34 3.08
3894 6231 3.771577 ATTGACTTGTTTCCTCGAGGT 57.228 42.857 30.17 9.94 36.34 3.85
3895 6232 5.106673 GGTAAATTGACTTGTTTCCTCGAGG 60.107 44.000 26.32 26.32 0.00 4.63
3896 6233 5.701290 AGGTAAATTGACTTGTTTCCTCGAG 59.299 40.000 5.13 5.13 0.00 4.04
3897 6234 5.617252 AGGTAAATTGACTTGTTTCCTCGA 58.383 37.500 0.00 0.00 0.00 4.04
3898 6235 5.468746 TGAGGTAAATTGACTTGTTTCCTCG 59.531 40.000 0.00 0.00 36.06 4.63
3899 6236 6.072452 CCTGAGGTAAATTGACTTGTTTCCTC 60.072 42.308 0.00 0.00 35.08 3.71
3900 6237 5.770162 CCTGAGGTAAATTGACTTGTTTCCT 59.230 40.000 0.00 0.00 0.00 3.36
3901 6238 5.535030 ACCTGAGGTAAATTGACTTGTTTCC 59.465 40.000 0.07 0.00 32.11 3.13
3902 6239 6.438763 CACCTGAGGTAAATTGACTTGTTTC 58.561 40.000 2.59 0.00 32.11 2.78
3903 6240 5.221244 GCACCTGAGGTAAATTGACTTGTTT 60.221 40.000 2.59 0.00 32.11 2.83
3911 6248 3.181507 CGTCATGCACCTGAGGTAAATTG 60.182 47.826 2.59 0.04 32.11 2.32
3944 6289 2.027285 TCAGACAATCGCCTGATGGAAA 60.027 45.455 0.00 0.00 34.78 3.13
3967 6313 6.276832 TGTCTACTTACTGGACGCTAATTT 57.723 37.500 0.00 0.00 33.21 1.82
4028 6377 3.153024 CCGGTGGGTGTATGTTGAG 57.847 57.895 0.00 0.00 0.00 3.02
4039 6388 1.594021 GCAAAAAGCAACCGGTGGG 60.594 57.895 8.52 4.69 44.79 4.61
4040 6389 4.026226 GCAAAAAGCAACCGGTGG 57.974 55.556 8.52 6.08 44.79 4.61
4049 6398 6.892310 TCTCTTTTTCTTTCTGCAAAAAGC 57.108 33.333 7.68 0.00 44.22 3.51
4050 6399 8.638685 TCATCTCTTTTTCTTTCTGCAAAAAG 57.361 30.769 6.15 6.15 45.21 2.27
4051 6400 9.037737 CATCATCTCTTTTTCTTTCTGCAAAAA 57.962 29.630 0.00 0.00 32.05 1.94
4052 6401 8.415553 TCATCATCTCTTTTTCTTTCTGCAAAA 58.584 29.630 0.00 0.00 0.00 2.44
4053 6402 7.944061 TCATCATCTCTTTTTCTTTCTGCAAA 58.056 30.769 0.00 0.00 0.00 3.68
4054 6403 7.446319 TCTCATCATCTCTTTTTCTTTCTGCAA 59.554 33.333 0.00 0.00 0.00 4.08
4055 6404 6.938596 TCTCATCATCTCTTTTTCTTTCTGCA 59.061 34.615 0.00 0.00 0.00 4.41
4056 6405 7.375106 TCTCATCATCTCTTTTTCTTTCTGC 57.625 36.000 0.00 0.00 0.00 4.26
4057 6406 8.781196 TGTTCTCATCATCTCTTTTTCTTTCTG 58.219 33.333 0.00 0.00 0.00 3.02
4058 6407 8.915057 TGTTCTCATCATCTCTTTTTCTTTCT 57.085 30.769 0.00 0.00 0.00 2.52
4059 6408 8.997323 TCTGTTCTCATCATCTCTTTTTCTTTC 58.003 33.333 0.00 0.00 0.00 2.62
4060 6409 8.915057 TCTGTTCTCATCATCTCTTTTTCTTT 57.085 30.769 0.00 0.00 0.00 2.52
4062 6411 9.598517 GTATCTGTTCTCATCATCTCTTTTTCT 57.401 33.333 0.00 0.00 0.00 2.52
4063 6412 9.598517 AGTATCTGTTCTCATCATCTCTTTTTC 57.401 33.333 0.00 0.00 0.00 2.29
4064 6413 9.598517 GAGTATCTGTTCTCATCATCTCTTTTT 57.401 33.333 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.