Multiple sequence alignment - TraesCS3D01G064800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G064800 chr3D 100.000 3661 0 0 1 3661 28502150 28498490 0.000000e+00 6761.0
1 TraesCS3D01G064800 chr3D 88.571 1120 126 2 1586 2704 4468280 4469398 0.000000e+00 1358.0
2 TraesCS3D01G064800 chr3D 78.247 639 118 14 838 1470 4467568 4468191 1.230000e-104 390.0
3 TraesCS3D01G064800 chr3D 100.000 45 0 0 1429 1473 28500677 28500633 2.340000e-12 84.2
4 TraesCS3D01G064800 chr3D 100.000 45 0 0 1474 1518 28500722 28500678 2.340000e-12 84.2
5 TraesCS3D01G064800 chr3A 92.945 1630 95 9 1474 3083 38266241 38264612 0.000000e+00 2355.0
6 TraesCS3D01G064800 chr3A 93.308 1599 86 11 1474 3057 38259952 38258360 0.000000e+00 2340.0
7 TraesCS3D01G064800 chr3A 88.694 1424 117 27 66 1473 38267592 38266197 0.000000e+00 1698.0
8 TraesCS3D01G064800 chr3A 86.576 1326 158 14 1574 2880 10271153 10272477 0.000000e+00 1445.0
9 TraesCS3D01G064800 chr3A 88.706 912 73 22 571 1473 38260798 38259908 0.000000e+00 1086.0
10 TraesCS3D01G064800 chr3A 93.043 230 13 1 3327 3556 38258119 38257893 2.110000e-87 333.0
11 TraesCS3D01G064800 chr3A 90.446 157 11 2 3248 3404 38264446 38264294 1.720000e-48 204.0
12 TraesCS3D01G064800 chr3B 92.531 1513 97 9 1474 2974 47460068 47458560 0.000000e+00 2154.0
13 TraesCS3D01G064800 chr3B 88.649 1665 148 22 1474 3123 50343646 50345284 0.000000e+00 1989.0
14 TraesCS3D01G064800 chr3B 89.363 1429 105 25 66 1473 47461426 47460024 0.000000e+00 1753.0
15 TraesCS3D01G064800 chr3B 86.318 1491 182 18 1574 3048 188493345 188494829 0.000000e+00 1604.0
16 TraesCS3D01G064800 chr3B 86.232 1489 186 16 1574 3048 188465277 188466760 0.000000e+00 1596.0
17 TraesCS3D01G064800 chr3B 82.725 1123 140 32 357 1470 50342610 50343687 0.000000e+00 950.0
18 TraesCS3D01G064800 chr3B 86.499 437 29 5 3240 3661 50346061 50346482 1.550000e-123 453.0
19 TraesCS3D01G064800 chr3B 92.823 209 13 1 2980 3188 50345679 50345885 5.940000e-78 302.0
20 TraesCS3D01G064800 chr3B 88.304 171 5 8 3506 3661 47458032 47457862 1.340000e-44 191.0
21 TraesCS3D01G064800 chr3B 86.957 138 17 1 2718 2854 46300137 46300274 1.760000e-33 154.0
22 TraesCS3D01G064800 chrUn 86.574 1229 151 12 1586 2802 35685380 35684154 0.000000e+00 1343.0
23 TraesCS3D01G064800 chr1A 100.000 43 0 0 27 69 544459946 544459904 3.030000e-11 80.5
24 TraesCS3D01G064800 chr6D 94.231 52 2 1 19 69 216786014 216785963 1.090000e-10 78.7
25 TraesCS3D01G064800 chr6D 100.000 41 0 0 29 69 142418743 142418703 3.920000e-10 76.8
26 TraesCS3D01G064800 chr7D 100.000 41 0 0 29 69 578628262 578628302 3.920000e-10 76.8
27 TraesCS3D01G064800 chr7B 100.000 41 0 0 29 69 595442351 595442391 3.920000e-10 76.8
28 TraesCS3D01G064800 chr7A 100.000 41 0 0 29 69 247658714 247658674 3.920000e-10 76.8
29 TraesCS3D01G064800 chr7A 100.000 39 0 0 31 69 17910782 17910744 5.070000e-09 73.1
30 TraesCS3D01G064800 chr4B 100.000 41 0 0 29 69 657294814 657294774 3.920000e-10 76.8
31 TraesCS3D01G064800 chr1D 100.000 41 0 0 29 69 168668647 168668607 3.920000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G064800 chr3D 28498490 28502150 3660 True 2309.8 6761 100.000000 1 3661 3 chr3D.!!$R1 3660
1 TraesCS3D01G064800 chr3D 4467568 4469398 1830 False 874.0 1358 83.409000 838 2704 2 chr3D.!!$F1 1866
2 TraesCS3D01G064800 chr3A 10271153 10272477 1324 False 1445.0 1445 86.576000 1574 2880 1 chr3A.!!$F1 1306
3 TraesCS3D01G064800 chr3A 38257893 38267592 9699 True 1336.0 2355 91.190333 66 3556 6 chr3A.!!$R1 3490
4 TraesCS3D01G064800 chr3B 188493345 188494829 1484 False 1604.0 1604 86.318000 1574 3048 1 chr3B.!!$F3 1474
5 TraesCS3D01G064800 chr3B 188465277 188466760 1483 False 1596.0 1596 86.232000 1574 3048 1 chr3B.!!$F2 1474
6 TraesCS3D01G064800 chr3B 47457862 47461426 3564 True 1366.0 2154 90.066000 66 3661 3 chr3B.!!$R1 3595
7 TraesCS3D01G064800 chr3B 50342610 50346482 3872 False 923.5 1989 87.674000 357 3661 4 chr3B.!!$F4 3304
8 TraesCS3D01G064800 chrUn 35684154 35685380 1226 True 1343.0 1343 86.574000 1586 2802 1 chrUn.!!$R1 1216

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.318120 CCAAGAGTTGCCGCCATTTT 59.682 50.0 0.00 0.0 0.0 1.82 F
1240 1276 0.034756 AGCGCATGTACAGTGTTCCA 59.965 50.0 11.47 0.0 0.0 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1508 1553 0.248289 GTCCTTTGCGTAGTGGCCTA 59.752 55.0 3.32 0.0 0.00 3.93 R
3200 9754 0.317479 GTACCTGTTGACTCGCTGGT 59.683 55.0 0.00 0.0 39.64 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.776526 TGCCCACCACCCAAGAGT 60.777 61.111 0.00 0.00 0.00 3.24
18 19 2.391130 TGCCCACCACCCAAGAGTT 61.391 57.895 0.00 0.00 0.00 3.01
19 20 1.903404 GCCCACCACCCAAGAGTTG 60.903 63.158 0.00 0.00 0.00 3.16
20 21 1.903404 CCCACCACCCAAGAGTTGC 60.903 63.158 0.00 0.00 0.00 4.17
21 22 1.903404 CCACCACCCAAGAGTTGCC 60.903 63.158 0.00 0.00 0.00 4.52
22 23 2.113139 ACCACCCAAGAGTTGCCG 59.887 61.111 0.00 0.00 0.00 5.69
23 24 3.365265 CCACCCAAGAGTTGCCGC 61.365 66.667 0.00 0.00 0.00 6.53
24 25 3.365265 CACCCAAGAGTTGCCGCC 61.365 66.667 0.00 0.00 0.00 6.13
25 26 3.884774 ACCCAAGAGTTGCCGCCA 61.885 61.111 0.00 0.00 0.00 5.69
26 27 2.361610 CCCAAGAGTTGCCGCCAT 60.362 61.111 0.00 0.00 0.00 4.40
27 28 1.978617 CCCAAGAGTTGCCGCCATT 60.979 57.895 0.00 0.00 0.00 3.16
28 29 1.535204 CCCAAGAGTTGCCGCCATTT 61.535 55.000 0.00 0.00 0.00 2.32
29 30 0.318120 CCAAGAGTTGCCGCCATTTT 59.682 50.000 0.00 0.00 0.00 1.82
30 31 1.270252 CCAAGAGTTGCCGCCATTTTT 60.270 47.619 0.00 0.00 0.00 1.94
51 52 2.880963 TTTTTGACGAAAAGGCAGGG 57.119 45.000 0.00 0.00 40.28 4.45
52 53 0.387565 TTTTGACGAAAAGGCAGGGC 59.612 50.000 0.00 0.00 40.28 5.19
64 65 4.179361 CAGGGCCACTGCTTTTCA 57.821 55.556 6.18 0.00 40.97 2.69
141 155 3.160585 CTCAACTCACTGGCCCCA 58.839 61.111 0.00 0.00 0.00 4.96
159 173 3.152341 CCCAATGATCCTGTTCCATAGC 58.848 50.000 0.00 0.00 0.00 2.97
179 196 1.267261 CGATCTCGACCCCACAGATAC 59.733 57.143 0.00 0.00 43.02 2.24
269 287 7.308435 CGTGAGCATATACATCAGATTAGACA 58.692 38.462 0.00 0.00 0.00 3.41
272 290 9.082313 TGAGCATATACATCAGATTAGACAAGA 57.918 33.333 0.00 0.00 0.00 3.02
283 301 6.655003 TCAGATTAGACAAGAAATGAACACCC 59.345 38.462 0.00 0.00 0.00 4.61
324 347 8.717821 TCATTGAGTAATACAGGTTTTCTTTCG 58.282 33.333 0.00 0.00 0.00 3.46
353 376 9.899226 AAAAAGAAGAAGAAGAAAATATGTCGG 57.101 29.630 0.00 0.00 0.00 4.79
355 378 6.173339 AGAAGAAGAAGAAAATATGTCGGCA 58.827 36.000 0.00 0.00 0.00 5.69
436 463 5.964958 ACTTGGTAAGGATGTTCAACATG 57.035 39.130 8.05 0.00 39.27 3.21
437 464 5.385198 ACTTGGTAAGGATGTTCAACATGT 58.615 37.500 8.05 0.00 39.27 3.21
438 465 6.539173 ACTTGGTAAGGATGTTCAACATGTA 58.461 36.000 8.05 0.00 39.27 2.29
439 466 6.430000 ACTTGGTAAGGATGTTCAACATGTAC 59.570 38.462 8.05 7.32 39.27 2.90
440 467 5.870706 TGGTAAGGATGTTCAACATGTACA 58.129 37.500 8.05 0.00 39.27 2.90
441 468 6.480763 TGGTAAGGATGTTCAACATGTACAT 58.519 36.000 8.05 11.63 40.34 2.29
463 493 5.304686 TGAGGTTGAAAGGAGCTAAGAAA 57.695 39.130 0.00 0.00 0.00 2.52
464 494 5.690865 TGAGGTTGAAAGGAGCTAAGAAAA 58.309 37.500 0.00 0.00 0.00 2.29
467 497 5.532779 AGGTTGAAAGGAGCTAAGAAAAGTG 59.467 40.000 0.00 0.00 0.00 3.16
491 521 1.004044 AGCTACCACAAGCAGCAATCT 59.996 47.619 0.00 0.00 45.30 2.40
492 522 1.399791 GCTACCACAAGCAGCAATCTC 59.600 52.381 0.00 0.00 42.30 2.75
493 523 2.012673 CTACCACAAGCAGCAATCTCC 58.987 52.381 0.00 0.00 0.00 3.71
494 524 0.610232 ACCACAAGCAGCAATCTCCC 60.610 55.000 0.00 0.00 0.00 4.30
495 525 0.323178 CCACAAGCAGCAATCTCCCT 60.323 55.000 0.00 0.00 0.00 4.20
496 526 1.093159 CACAAGCAGCAATCTCCCTC 58.907 55.000 0.00 0.00 0.00 4.30
497 527 0.694771 ACAAGCAGCAATCTCCCTCA 59.305 50.000 0.00 0.00 0.00 3.86
501 531 1.353694 AGCAGCAATCTCCCTCAAGTT 59.646 47.619 0.00 0.00 0.00 2.66
502 532 1.471684 GCAGCAATCTCCCTCAAGTTG 59.528 52.381 0.00 0.00 0.00 3.16
585 615 3.062042 ACCGTAGACCGTTGAACATTTC 58.938 45.455 0.00 0.00 33.66 2.17
662 697 1.069823 CATCTCATCCAAGAGGGGTCG 59.930 57.143 0.00 0.00 36.30 4.79
710 746 3.957919 GGTACCTCCTCCCTGAGC 58.042 66.667 4.06 0.00 0.00 4.26
950 986 1.007387 GTTTGACGGCAAAGGCAGG 60.007 57.895 18.78 0.00 44.12 4.85
1008 1044 2.158842 GCCTGCAAGATAGATGGTCAGT 60.159 50.000 0.00 0.00 34.07 3.41
1077 1113 1.740025 GTTTCTTTGGCATCTCCCTCG 59.260 52.381 0.00 0.00 0.00 4.63
1079 1115 1.500474 TCTTTGGCATCTCCCTCGAT 58.500 50.000 0.00 0.00 0.00 3.59
1107 1143 2.253610 TCAACGTACCCATGGAGTTCT 58.746 47.619 15.22 0.00 0.00 3.01
1155 1191 1.142688 ATCAGGGTGCAGAAAGGGGT 61.143 55.000 0.00 0.00 0.00 4.95
1157 1193 2.035783 GGGTGCAGAAAGGGGTCC 59.964 66.667 0.00 0.00 0.00 4.46
1205 1241 4.441695 CCGAGCGAGCTCAAGGCA 62.442 66.667 22.81 0.00 42.86 4.75
1231 1267 4.751539 CTGCAACAGCGCATGTAC 57.248 55.556 11.47 7.91 43.00 2.90
1238 1274 1.148310 ACAGCGCATGTACAGTGTTC 58.852 50.000 11.47 0.00 41.60 3.18
1239 1275 0.443869 CAGCGCATGTACAGTGTTCC 59.556 55.000 11.47 0.00 0.00 3.62
1240 1276 0.034756 AGCGCATGTACAGTGTTCCA 59.965 50.000 11.47 0.00 0.00 3.53
1241 1277 0.443869 GCGCATGTACAGTGTTCCAG 59.556 55.000 0.30 0.00 0.00 3.86
1242 1278 1.078709 CGCATGTACAGTGTTCCAGG 58.921 55.000 0.00 1.85 0.00 4.45
1243 1279 1.337728 CGCATGTACAGTGTTCCAGGA 60.338 52.381 0.00 0.00 0.00 3.86
1244 1280 2.350522 GCATGTACAGTGTTCCAGGAG 58.649 52.381 0.00 0.00 0.00 3.69
1245 1281 2.350522 CATGTACAGTGTTCCAGGAGC 58.649 52.381 0.00 0.00 0.00 4.70
1246 1282 1.419381 TGTACAGTGTTCCAGGAGCA 58.581 50.000 0.00 0.90 0.00 4.26
1247 1283 1.344438 TGTACAGTGTTCCAGGAGCAG 59.656 52.381 6.17 0.00 0.00 4.24
1250 1286 1.701847 ACAGTGTTCCAGGAGCAGAAT 59.298 47.619 6.17 0.00 0.00 2.40
1254 1290 4.334759 CAGTGTTCCAGGAGCAGAATAATG 59.665 45.833 6.17 0.00 0.00 1.90
1255 1291 3.629398 GTGTTCCAGGAGCAGAATAATGG 59.371 47.826 6.17 0.00 0.00 3.16
1256 1292 3.266772 TGTTCCAGGAGCAGAATAATGGT 59.733 43.478 0.90 0.00 0.00 3.55
1257 1293 4.473196 TGTTCCAGGAGCAGAATAATGGTA 59.527 41.667 0.90 0.00 0.00 3.25
1273 1315 5.551305 AATGGTATGTACTGCTGCTATGA 57.449 39.130 0.00 0.00 0.00 2.15
1274 1316 4.590850 TGGTATGTACTGCTGCTATGAG 57.409 45.455 0.00 0.00 0.00 2.90
1346 1388 2.436173 GGAGGCAATAAGCTACTCCAGT 59.564 50.000 0.00 0.00 45.65 4.00
1353 1395 5.121811 CAATAAGCTACTCCAGTGATGCTT 58.878 41.667 15.61 15.61 40.50 3.91
1361 1403 1.911357 TCCAGTGATGCTTCCACAGAT 59.089 47.619 0.00 0.00 37.01 2.90
1365 1407 4.511527 CAGTGATGCTTCCACAGATACTT 58.488 43.478 0.00 0.00 37.01 2.24
1373 1415 4.034975 GCTTCCACAGATACTTCATTCAGC 59.965 45.833 0.00 0.00 0.00 4.26
1381 1423 2.226962 ACTTCATTCAGCTGCCCATT 57.773 45.000 9.47 0.00 0.00 3.16
1382 1424 2.532843 ACTTCATTCAGCTGCCCATTT 58.467 42.857 9.47 0.00 0.00 2.32
1389 1431 0.664761 CAGCTGCCCATTTGATACCG 59.335 55.000 0.00 0.00 0.00 4.02
1394 1436 3.807209 GCTGCCCATTTGATACCGACTAT 60.807 47.826 0.00 0.00 0.00 2.12
1416 1458 1.450312 GTCATCTTCTGCCCACCGG 60.450 63.158 0.00 0.00 0.00 5.28
1455 1500 2.763448 CCTCCAAGTCCTCCTAACTCAG 59.237 54.545 0.00 0.00 0.00 3.35
1459 1504 2.828520 CAAGTCCTCCTAACTCAGCTGA 59.171 50.000 17.19 17.19 0.00 4.26
1461 1506 3.295973 AGTCCTCCTAACTCAGCTGATC 58.704 50.000 18.63 0.00 0.00 2.92
1470 1515 1.484240 ACTCAGCTGATCTTAGGCCAC 59.516 52.381 18.63 0.00 0.00 5.01
1473 1518 3.577848 CTCAGCTGATCTTAGGCCACTAT 59.422 47.826 18.63 0.00 0.00 2.12
1474 1519 3.576118 TCAGCTGATCTTAGGCCACTATC 59.424 47.826 13.74 2.81 0.00 2.08
1475 1520 3.577848 CAGCTGATCTTAGGCCACTATCT 59.422 47.826 8.42 0.00 0.00 1.98
1476 1521 4.040217 CAGCTGATCTTAGGCCACTATCTT 59.960 45.833 8.42 0.00 0.00 2.40
1477 1522 4.283212 AGCTGATCTTAGGCCACTATCTTC 59.717 45.833 5.01 0.00 0.00 2.87
1478 1523 4.039730 GCTGATCTTAGGCCACTATCTTCA 59.960 45.833 5.01 0.00 0.00 3.02
1479 1524 5.537188 CTGATCTTAGGCCACTATCTTCAC 58.463 45.833 5.01 0.00 0.00 3.18
1480 1525 4.345257 TGATCTTAGGCCACTATCTTCACC 59.655 45.833 5.01 0.00 0.00 4.02
1481 1526 3.995636 TCTTAGGCCACTATCTTCACCT 58.004 45.455 5.01 0.00 0.00 4.00
1482 1527 3.961408 TCTTAGGCCACTATCTTCACCTC 59.039 47.826 5.01 0.00 0.00 3.85
1483 1528 1.501582 AGGCCACTATCTTCACCTCC 58.498 55.000 5.01 0.00 0.00 4.30
1484 1529 1.204146 GGCCACTATCTTCACCTCCA 58.796 55.000 0.00 0.00 0.00 3.86
1485 1530 1.559682 GGCCACTATCTTCACCTCCAA 59.440 52.381 0.00 0.00 0.00 3.53
1486 1531 2.420687 GGCCACTATCTTCACCTCCAAG 60.421 54.545 0.00 0.00 0.00 3.61
1487 1532 2.237392 GCCACTATCTTCACCTCCAAGT 59.763 50.000 0.00 0.00 0.00 3.16
1488 1533 3.680196 GCCACTATCTTCACCTCCAAGTC 60.680 52.174 0.00 0.00 0.00 3.01
1489 1534 3.118592 CCACTATCTTCACCTCCAAGTCC 60.119 52.174 0.00 0.00 0.00 3.85
1490 1535 3.772025 CACTATCTTCACCTCCAAGTCCT 59.228 47.826 0.00 0.00 0.00 3.85
1491 1536 4.027437 ACTATCTTCACCTCCAAGTCCTC 58.973 47.826 0.00 0.00 0.00 3.71
1492 1537 1.645710 TCTTCACCTCCAAGTCCTCC 58.354 55.000 0.00 0.00 0.00 4.30
1493 1538 1.150135 TCTTCACCTCCAAGTCCTCCT 59.850 52.381 0.00 0.00 0.00 3.69
1494 1539 2.382305 TCTTCACCTCCAAGTCCTCCTA 59.618 50.000 0.00 0.00 0.00 2.94
1495 1540 3.173965 CTTCACCTCCAAGTCCTCCTAA 58.826 50.000 0.00 0.00 0.00 2.69
1496 1541 2.537143 TCACCTCCAAGTCCTCCTAAC 58.463 52.381 0.00 0.00 0.00 2.34
1497 1542 2.111972 TCACCTCCAAGTCCTCCTAACT 59.888 50.000 0.00 0.00 0.00 2.24
1498 1543 2.498078 CACCTCCAAGTCCTCCTAACTC 59.502 54.545 0.00 0.00 0.00 3.01
1499 1544 2.111972 ACCTCCAAGTCCTCCTAACTCA 59.888 50.000 0.00 0.00 0.00 3.41
1500 1545 2.763448 CCTCCAAGTCCTCCTAACTCAG 59.237 54.545 0.00 0.00 0.00 3.35
1501 1546 2.167487 CTCCAAGTCCTCCTAACTCAGC 59.833 54.545 0.00 0.00 0.00 4.26
1502 1547 2.183679 CCAAGTCCTCCTAACTCAGCT 58.816 52.381 0.00 0.00 0.00 4.24
1503 1548 2.093764 CCAAGTCCTCCTAACTCAGCTG 60.094 54.545 7.63 7.63 0.00 4.24
1504 1549 2.828520 CAAGTCCTCCTAACTCAGCTGA 59.171 50.000 17.19 17.19 0.00 4.26
1505 1550 3.396685 AGTCCTCCTAACTCAGCTGAT 57.603 47.619 18.63 5.89 0.00 2.90
1506 1551 3.295973 AGTCCTCCTAACTCAGCTGATC 58.704 50.000 18.63 0.00 0.00 2.92
1507 1552 3.052944 AGTCCTCCTAACTCAGCTGATCT 60.053 47.826 18.63 9.88 0.00 2.75
1508 1553 3.704061 GTCCTCCTAACTCAGCTGATCTT 59.296 47.826 18.63 13.81 0.00 2.40
1509 1554 4.890581 GTCCTCCTAACTCAGCTGATCTTA 59.109 45.833 18.63 14.20 0.00 2.10
1510 1555 5.009610 GTCCTCCTAACTCAGCTGATCTTAG 59.990 48.000 18.63 21.55 0.00 2.18
1511 1556 4.280677 CCTCCTAACTCAGCTGATCTTAGG 59.719 50.000 32.26 32.26 36.56 2.69
1512 1557 3.639094 TCCTAACTCAGCTGATCTTAGGC 59.361 47.826 32.74 2.32 35.90 3.93
1513 1558 2.998316 AACTCAGCTGATCTTAGGCC 57.002 50.000 18.63 0.00 0.00 5.19
1514 1559 1.871418 ACTCAGCTGATCTTAGGCCA 58.129 50.000 18.63 0.00 0.00 5.36
1515 1560 1.484240 ACTCAGCTGATCTTAGGCCAC 59.516 52.381 18.63 0.00 0.00 5.01
1516 1561 1.761784 CTCAGCTGATCTTAGGCCACT 59.238 52.381 18.63 0.00 0.00 4.00
1517 1562 2.961741 CTCAGCTGATCTTAGGCCACTA 59.038 50.000 18.63 0.00 0.00 2.74
1518 1563 2.695666 TCAGCTGATCTTAGGCCACTAC 59.304 50.000 13.74 0.00 0.00 2.73
1522 1567 1.828595 TGATCTTAGGCCACTACGCAA 59.171 47.619 5.01 0.00 0.00 4.85
1533 1578 1.053424 ACTACGCAAAGGACCCTCAA 58.947 50.000 0.00 0.00 0.00 3.02
1542 1596 1.972588 AGGACCCTCAATAGGCACTT 58.027 50.000 0.00 0.00 42.14 3.16
1551 1605 5.464168 CCTCAATAGGCACTTTTGTTTCAG 58.536 41.667 0.00 0.00 45.35 3.02
1560 1614 5.023286 GCACTTTTGTTTCAGTTGCAATTG 58.977 37.500 15.31 15.31 0.00 2.32
1580 1643 4.981806 TGCAGGTGCCATAGTTTTAATC 57.018 40.909 0.00 0.00 41.18 1.75
1584 1647 4.634004 CAGGTGCCATAGTTTTAATCGTCA 59.366 41.667 0.00 0.00 0.00 4.35
1599 1662 9.958234 TTTTAATCGTCACATTCATCTTTTTCA 57.042 25.926 0.00 0.00 0.00 2.69
1606 1669 7.371615 CGTCACATTCATCTTTTTCATCATACG 59.628 37.037 0.00 0.00 0.00 3.06
1776 8125 2.027192 TCTGTTTTCGAAGGGCAGCTAT 60.027 45.455 16.01 0.00 0.00 2.97
1936 8285 5.059833 CCATAGGCTCTTGGTTTATGAGTC 58.940 45.833 7.98 0.00 35.90 3.36
2341 8690 4.499865 CGACACTTCCTTGTCTGAAGAGAA 60.500 45.833 6.99 0.00 43.30 2.87
2443 8792 2.097038 AAGCACACGAGCGAGATGC 61.097 57.895 0.00 3.49 46.98 3.91
2676 9025 3.960571 AGGTGAAATGAGACAATCCCAG 58.039 45.455 0.00 0.00 0.00 4.45
2687 9037 1.377725 AATCCCAGCAAGACAGCCG 60.378 57.895 0.00 0.00 34.23 5.52
2690 9040 2.662596 CCAGCAAGACAGCCGGTA 59.337 61.111 1.90 0.00 34.23 4.02
2731 9093 8.208224 TGATGTTCTGAAAGTAAAAGACCTGTA 58.792 33.333 0.00 0.00 33.76 2.74
2734 9103 7.041372 TGTTCTGAAAGTAAAAGACCTGTATGC 60.041 37.037 0.00 0.00 33.76 3.14
2746 9116 5.352284 AGACCTGTATGCTGTATCTTTTCG 58.648 41.667 0.00 0.00 0.00 3.46
2766 9136 5.258456 TCGAATTAGTACAATCCGAAGCT 57.742 39.130 0.00 0.00 0.00 3.74
2780 9150 2.863137 CCGAAGCTGCTTATCTTGAGTC 59.137 50.000 15.95 0.00 0.00 3.36
2869 9242 7.611213 ATTCTATAGTTTGTTCAGTTTCCCG 57.389 36.000 0.00 0.00 0.00 5.14
2892 9265 4.098914 TGTAATGCAGACTTGTTTCCCT 57.901 40.909 0.00 0.00 0.00 4.20
2946 9328 6.041296 CCAAAATGCTCCTAGCTCCAATAAAT 59.959 38.462 0.00 0.00 42.97 1.40
2948 9330 5.573380 ATGCTCCTAGCTCCAATAAATGA 57.427 39.130 0.00 0.00 42.97 2.57
2957 9339 8.782144 CCTAGCTCCAATAAATGAAGAGAAATC 58.218 37.037 0.00 0.00 0.00 2.17
2964 9346 8.668353 CCAATAAATGAAGAGAAATCGACAGAA 58.332 33.333 0.00 0.00 0.00 3.02
2971 9353 7.745972 TGAAGAGAAATCGACAGAATGAATTG 58.254 34.615 0.00 0.00 39.69 2.32
2974 9356 8.503458 AGAGAAATCGACAGAATGAATTGAAT 57.497 30.769 0.00 0.00 39.69 2.57
2976 9441 8.906636 AGAAATCGACAGAATGAATTGAATTG 57.093 30.769 0.00 0.00 39.69 2.32
2980 9445 7.319142 TCGACAGAATGAATTGAATTGCATA 57.681 32.000 0.00 0.00 39.69 3.14
2981 9446 7.412063 TCGACAGAATGAATTGAATTGCATAG 58.588 34.615 0.00 0.00 39.69 2.23
3050 9517 6.839134 ACACTTTTAAGTTCTCCCAATTTCCT 59.161 34.615 0.00 0.00 37.08 3.36
3057 9524 4.351111 AGTTCTCCCAATTTCCTGTGTAGT 59.649 41.667 0.00 0.00 0.00 2.73
3059 9526 3.056107 TCTCCCAATTTCCTGTGTAGTCG 60.056 47.826 0.00 0.00 0.00 4.18
3080 9547 2.282745 GCCCTGCCTCAAGCTGTT 60.283 61.111 0.00 0.00 44.23 3.16
3092 9559 2.297880 TCAAGCTGTTTGTAGCCTACGA 59.702 45.455 4.16 0.00 44.76 3.43
3101 9568 5.009210 TGTTTGTAGCCTACGATTTTGCTTT 59.991 36.000 0.00 0.00 35.34 3.51
3102 9569 4.678509 TGTAGCCTACGATTTTGCTTTG 57.321 40.909 0.00 0.00 35.34 2.77
3113 9580 4.318974 CGATTTTGCTTTGCTTCCCTTTTG 60.319 41.667 0.00 0.00 0.00 2.44
3119 9586 4.155644 TGCTTTGCTTCCCTTTTGTTTTTG 59.844 37.500 0.00 0.00 0.00 2.44
3120 9587 4.394610 GCTTTGCTTCCCTTTTGTTTTTGA 59.605 37.500 0.00 0.00 0.00 2.69
3121 9588 5.066375 GCTTTGCTTCCCTTTTGTTTTTGAT 59.934 36.000 0.00 0.00 0.00 2.57
3122 9589 6.259829 GCTTTGCTTCCCTTTTGTTTTTGATA 59.740 34.615 0.00 0.00 0.00 2.15
3123 9590 7.518848 GCTTTGCTTCCCTTTTGTTTTTGATAG 60.519 37.037 0.00 0.00 0.00 2.08
3124 9591 5.296748 TGCTTCCCTTTTGTTTTTGATAGC 58.703 37.500 0.00 0.00 0.00 2.97
3125 9592 5.070313 TGCTTCCCTTTTGTTTTTGATAGCT 59.930 36.000 0.00 0.00 0.00 3.32
3126 9593 5.991606 GCTTCCCTTTTGTTTTTGATAGCTT 59.008 36.000 0.00 0.00 0.00 3.74
3159 9713 8.755028 TGCCTTCTAATACACTTAATACAGACA 58.245 33.333 0.00 0.00 0.00 3.41
3165 9719 9.350357 CTAATACACTTAATACAGACAACACGT 57.650 33.333 0.00 0.00 0.00 4.49
3175 9729 2.653766 CAACACGTGTTTGGGCGC 60.654 61.111 30.49 0.00 35.83 6.53
3176 9730 3.134792 AACACGTGTTTGGGCGCA 61.135 55.556 27.70 0.00 33.93 6.09
3177 9731 2.701780 AACACGTGTTTGGGCGCAA 61.702 52.632 27.70 12.81 33.93 4.85
3178 9732 2.103143 CACGTGTTTGGGCGCAAA 59.897 55.556 23.49 23.49 0.00 3.68
3179 9733 2.103340 ACGTGTTTGGGCGCAAAC 59.897 55.556 38.20 38.20 43.29 2.93
3180 9734 3.021788 CGTGTTTGGGCGCAAACG 61.022 61.111 37.99 30.20 45.24 3.60
3183 9737 3.906879 GTTTGGGCGCAAACGGGT 61.907 61.111 34.36 0.00 40.57 5.28
3188 9742 4.025401 GGCGCAAACGGGTGTCTG 62.025 66.667 10.83 0.00 40.57 3.51
3190 9744 2.954753 GCGCAAACGGGTGTCTGAG 61.955 63.158 0.30 0.00 40.57 3.35
3192 9746 0.878523 CGCAAACGGGTGTCTGAGAA 60.879 55.000 0.00 0.00 34.97 2.87
3193 9747 1.305201 GCAAACGGGTGTCTGAGAAA 58.695 50.000 0.00 0.00 0.00 2.52
3194 9748 1.673920 GCAAACGGGTGTCTGAGAAAA 59.326 47.619 0.00 0.00 0.00 2.29
3195 9749 2.098443 GCAAACGGGTGTCTGAGAAAAA 59.902 45.455 0.00 0.00 0.00 1.94
3214 9768 2.902705 AAGTTACCAGCGAGTCAACA 57.097 45.000 0.00 0.00 0.00 3.33
3216 9770 1.000955 AGTTACCAGCGAGTCAACAGG 59.999 52.381 0.00 0.00 0.00 4.00
3236 9790 5.291905 AGGTACTGTTGTGCTTAGAAAGT 57.708 39.130 0.00 0.00 37.18 2.66
3237 9791 5.057149 AGGTACTGTTGTGCTTAGAAAGTG 58.943 41.667 0.00 0.00 37.18 3.16
3238 9792 4.814771 GGTACTGTTGTGCTTAGAAAGTGT 59.185 41.667 0.00 0.00 0.00 3.55
3239 9793 5.987347 GGTACTGTTGTGCTTAGAAAGTGTA 59.013 40.000 0.00 0.00 0.00 2.90
3240 9794 6.649557 GGTACTGTTGTGCTTAGAAAGTGTAT 59.350 38.462 0.00 0.00 0.00 2.29
3241 9795 6.787085 ACTGTTGTGCTTAGAAAGTGTATC 57.213 37.500 0.00 0.00 0.00 2.24
3242 9796 6.288294 ACTGTTGTGCTTAGAAAGTGTATCA 58.712 36.000 0.00 0.00 0.00 2.15
3243 9797 6.936900 ACTGTTGTGCTTAGAAAGTGTATCAT 59.063 34.615 0.00 0.00 0.00 2.45
3244 9798 8.094548 ACTGTTGTGCTTAGAAAGTGTATCATA 58.905 33.333 0.00 0.00 0.00 2.15
3246 9800 9.448438 TGTTGTGCTTAGAAAGTGTATCATATT 57.552 29.630 0.00 0.00 0.00 1.28
3249 9803 9.448438 TGTGCTTAGAAAGTGTATCATATTTGT 57.552 29.630 0.00 0.00 0.00 2.83
3250 9804 9.922305 GTGCTTAGAAAGTGTATCATATTTGTC 57.078 33.333 0.00 0.00 0.00 3.18
3251 9805 9.665719 TGCTTAGAAAGTGTATCATATTTGTCA 57.334 29.630 0.00 0.00 0.00 3.58
3279 9833 7.765695 AAGATTCAATTCAGTTAGCCTTTGA 57.234 32.000 0.00 0.00 0.00 2.69
3280 9834 7.388460 AGATTCAATTCAGTTAGCCTTTGAG 57.612 36.000 0.00 0.00 0.00 3.02
3281 9835 7.170965 AGATTCAATTCAGTTAGCCTTTGAGA 58.829 34.615 0.00 0.00 0.00 3.27
3282 9836 6.560253 TTCAATTCAGTTAGCCTTTGAGAC 57.440 37.500 0.00 0.00 0.00 3.36
3283 9837 4.690748 TCAATTCAGTTAGCCTTTGAGACG 59.309 41.667 0.00 0.00 0.00 4.18
3284 9838 3.746045 TTCAGTTAGCCTTTGAGACGT 57.254 42.857 0.00 0.00 0.00 4.34
3285 9839 4.859304 TTCAGTTAGCCTTTGAGACGTA 57.141 40.909 0.00 0.00 0.00 3.57
3286 9840 4.436242 TCAGTTAGCCTTTGAGACGTAG 57.564 45.455 0.00 0.00 0.00 3.51
3287 9841 3.192844 TCAGTTAGCCTTTGAGACGTAGG 59.807 47.826 0.00 0.00 0.00 3.18
3288 9842 2.496470 AGTTAGCCTTTGAGACGTAGGG 59.504 50.000 3.57 0.00 0.00 3.53
3289 9843 0.822164 TAGCCTTTGAGACGTAGGGC 59.178 55.000 1.11 1.11 39.82 5.19
3290 9844 1.192146 AGCCTTTGAGACGTAGGGCA 61.192 55.000 11.29 0.00 41.71 5.36
3291 9845 0.107654 GCCTTTGAGACGTAGGGCAT 60.108 55.000 4.45 0.00 39.38 4.40
3292 9846 1.941325 CCTTTGAGACGTAGGGCATC 58.059 55.000 0.00 0.00 0.00 3.91
3293 9847 1.560923 CTTTGAGACGTAGGGCATCG 58.439 55.000 0.00 0.00 0.00 3.84
3294 9848 0.459585 TTTGAGACGTAGGGCATCGC 60.460 55.000 0.00 0.00 0.00 4.58
3295 9849 2.353607 GAGACGTAGGGCATCGCG 60.354 66.667 0.00 0.00 0.00 5.87
3296 9850 4.570663 AGACGTAGGGCATCGCGC 62.571 66.667 0.00 0.00 41.91 6.86
3300 9854 3.925238 GTAGGGCATCGCGCGTTG 61.925 66.667 30.93 30.93 46.18 4.10
3313 9867 3.648982 CGTTGCGACAGCTGGCAA 61.649 61.111 22.03 21.89 46.06 4.52
3315 9869 2.203195 TTGCGACAGCTGGCAACT 60.203 55.556 22.03 0.00 43.63 3.16
3316 9870 1.823470 TTGCGACAGCTGGCAACTT 60.823 52.632 22.03 0.00 43.63 2.66
3317 9871 2.062361 TTGCGACAGCTGGCAACTTG 62.062 55.000 22.03 3.31 43.63 3.16
3318 9872 2.949106 CGACAGCTGGCAACTTGG 59.051 61.111 22.03 0.00 37.61 3.61
3319 9873 2.647297 GACAGCTGGCAACTTGGC 59.353 61.111 16.81 8.38 44.03 4.52
3320 9874 1.900498 GACAGCTGGCAACTTGGCT 60.900 57.895 16.81 1.46 44.10 4.75
3321 9875 2.649034 CAGCTGGCAACTTGGCTG 59.351 61.111 15.73 15.57 44.10 4.85
3322 9876 2.517414 AGCTGGCAACTTGGCTGA 59.483 55.556 21.74 1.48 44.10 4.26
3323 9877 1.602888 AGCTGGCAACTTGGCTGAG 60.603 57.895 21.74 11.17 44.10 3.35
3324 9878 1.900498 GCTGGCAACTTGGCTGAGT 60.900 57.895 21.74 0.00 44.10 3.41
3325 9879 1.860484 GCTGGCAACTTGGCTGAGTC 61.860 60.000 21.74 4.94 44.10 3.36
3347 9901 0.108186 TACACGAGAAGCCAGCCATG 60.108 55.000 0.00 0.00 0.00 3.66
3370 9924 3.944087 ACTACTTTCCTGCTCATGGAAC 58.056 45.455 0.00 0.00 42.57 3.62
3379 9933 3.264947 CTGCTCATGGAACGAAAGATCA 58.735 45.455 0.00 0.00 34.15 2.92
3404 10609 1.726322 CCTAGCACGTATCGCGCTC 60.726 63.158 5.56 0.00 41.46 5.03
3428 10633 2.417924 CCGGATCATCTATGCTACTGCC 60.418 54.545 0.00 0.00 38.71 4.85
3501 10706 8.065407 CACATGAGATTTGACAAACATTTTTGG 58.935 33.333 9.06 0.00 45.65 3.28
3502 10707 7.227116 ACATGAGATTTGACAAACATTTTTGGG 59.773 33.333 9.06 0.00 45.65 4.12
3514 10719 9.927668 ACAAACATTTTTGGGATTTGATAGTAG 57.072 29.630 9.06 0.00 45.65 2.57
3585 10790 4.813809 TCTGGATTATTCCTCTGAGCTCT 58.186 43.478 16.19 0.00 43.07 4.09
3623 10843 1.005340 CTCAGAATCCTTGCACGAGC 58.995 55.000 0.00 0.00 42.57 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.391130 AACTCTTGGGTGGTGGGCA 61.391 57.895 0.00 0.00 0.00 5.36
1 2 1.903404 CAACTCTTGGGTGGTGGGC 60.903 63.158 0.00 0.00 0.00 5.36
2 3 1.903404 GCAACTCTTGGGTGGTGGG 60.903 63.158 0.00 0.00 32.24 4.61
3 4 1.903404 GGCAACTCTTGGGTGGTGG 60.903 63.158 0.00 0.00 32.24 4.61
4 5 2.260869 CGGCAACTCTTGGGTGGTG 61.261 63.158 0.00 0.00 32.24 4.17
5 6 2.113139 CGGCAACTCTTGGGTGGT 59.887 61.111 0.00 0.00 32.24 4.16
6 7 3.365265 GCGGCAACTCTTGGGTGG 61.365 66.667 0.00 0.00 32.24 4.61
7 8 3.365265 GGCGGCAACTCTTGGGTG 61.365 66.667 3.07 0.00 35.33 4.61
8 9 2.713531 AATGGCGGCAACTCTTGGGT 62.714 55.000 18.31 0.00 0.00 4.51
9 10 1.535204 AAATGGCGGCAACTCTTGGG 61.535 55.000 18.31 0.00 0.00 4.12
10 11 0.318120 AAAATGGCGGCAACTCTTGG 59.682 50.000 18.31 0.00 0.00 3.61
11 12 2.153366 AAAAATGGCGGCAACTCTTG 57.847 45.000 18.31 0.00 0.00 3.02
32 33 1.202475 GCCCTGCCTTTTCGTCAAAAA 60.202 47.619 0.00 0.00 35.56 1.94
33 34 0.387565 GCCCTGCCTTTTCGTCAAAA 59.612 50.000 0.00 0.00 0.00 2.44
34 35 1.460273 GGCCCTGCCTTTTCGTCAAA 61.460 55.000 0.00 0.00 46.69 2.69
35 36 1.901464 GGCCCTGCCTTTTCGTCAA 60.901 57.895 0.00 0.00 46.69 3.18
36 37 2.282180 GGCCCTGCCTTTTCGTCA 60.282 61.111 0.00 0.00 46.69 4.35
47 48 0.971386 AATGAAAAGCAGTGGCCCTG 59.029 50.000 14.87 14.87 44.53 4.45
48 49 0.971386 CAATGAAAAGCAGTGGCCCT 59.029 50.000 0.00 0.00 42.56 5.19
49 50 0.671472 GCAATGAAAAGCAGTGGCCC 60.671 55.000 0.00 0.00 42.57 5.80
50 51 2.831597 GCAATGAAAAGCAGTGGCC 58.168 52.632 0.00 0.00 42.57 5.36
52 53 1.010419 GCGGCAATGAAAAGCAGTGG 61.010 55.000 0.00 0.00 42.57 4.00
53 54 1.010419 GGCGGCAATGAAAAGCAGTG 61.010 55.000 3.07 0.00 44.98 3.66
54 55 1.290009 GGCGGCAATGAAAAGCAGT 59.710 52.632 3.07 0.00 0.00 4.40
55 56 0.108520 ATGGCGGCAATGAAAAGCAG 60.109 50.000 18.31 0.00 0.00 4.24
56 57 0.321021 AATGGCGGCAATGAAAAGCA 59.679 45.000 18.31 0.00 0.00 3.91
57 58 0.722848 CAATGGCGGCAATGAAAAGC 59.277 50.000 21.56 0.00 0.00 3.51
58 59 2.083167 ACAATGGCGGCAATGAAAAG 57.917 45.000 31.10 6.89 0.00 2.27
59 60 2.141517 CAACAATGGCGGCAATGAAAA 58.858 42.857 31.10 0.00 0.00 2.29
60 61 1.342496 TCAACAATGGCGGCAATGAAA 59.658 42.857 31.10 13.96 0.00 2.69
61 62 0.964700 TCAACAATGGCGGCAATGAA 59.035 45.000 31.10 14.30 0.00 2.57
62 63 0.243365 GTCAACAATGGCGGCAATGA 59.757 50.000 31.10 21.40 0.00 2.57
63 64 0.737019 GGTCAACAATGGCGGCAATG 60.737 55.000 23.98 23.98 29.54 2.82
64 65 0.899717 AGGTCAACAATGGCGGCAAT 60.900 50.000 18.31 4.06 29.54 3.56
128 142 0.257039 GATCATTGGGGCCAGTGAGT 59.743 55.000 4.39 0.00 43.89 3.41
132 146 1.217057 ACAGGATCATTGGGGCCAGT 61.217 55.000 4.39 0.00 0.00 4.00
159 173 1.267261 GTATCTGTGGGGTCGAGATCG 59.733 57.143 0.00 0.00 41.45 3.69
238 256 0.383949 TGTATATGCTCACGCTGCGA 59.616 50.000 30.47 5.85 36.97 5.10
245 263 9.138062 CTTGTCTAATCTGATGTATATGCTCAC 57.862 37.037 0.00 0.00 0.00 3.51
269 287 2.582052 TGCTTCGGGTGTTCATTTCTT 58.418 42.857 0.00 0.00 0.00 2.52
272 290 3.810310 TTTTGCTTCGGGTGTTCATTT 57.190 38.095 0.00 0.00 0.00 2.32
338 361 8.745837 CAAACATATTGCCGACATATTTTCTTC 58.254 33.333 0.00 0.00 0.00 2.87
340 363 6.697019 GCAAACATATTGCCGACATATTTTCT 59.303 34.615 1.80 0.00 39.38 2.52
341 364 6.475076 TGCAAACATATTGCCGACATATTTTC 59.525 34.615 10.34 0.00 44.32 2.29
342 365 6.255453 GTGCAAACATATTGCCGACATATTTT 59.745 34.615 10.34 0.00 44.32 1.82
353 376 3.201726 ACGACAGTGCAAACATATTGC 57.798 42.857 6.23 6.23 45.11 3.56
355 378 4.454161 TGCTTACGACAGTGCAAACATATT 59.546 37.500 0.00 0.00 32.12 1.28
436 463 3.944087 AGCTCCTTTCAACCTCATGTAC 58.056 45.455 0.00 0.00 0.00 2.90
437 464 5.483937 TCTTAGCTCCTTTCAACCTCATGTA 59.516 40.000 0.00 0.00 0.00 2.29
438 465 4.287067 TCTTAGCTCCTTTCAACCTCATGT 59.713 41.667 0.00 0.00 0.00 3.21
439 466 4.836825 TCTTAGCTCCTTTCAACCTCATG 58.163 43.478 0.00 0.00 0.00 3.07
440 467 5.505181 TTCTTAGCTCCTTTCAACCTCAT 57.495 39.130 0.00 0.00 0.00 2.90
441 468 4.974645 TTCTTAGCTCCTTTCAACCTCA 57.025 40.909 0.00 0.00 0.00 3.86
463 493 2.222027 GCTTGTGGTAGCTGTTCACTT 58.778 47.619 14.09 0.00 38.15 3.16
464 494 1.140852 TGCTTGTGGTAGCTGTTCACT 59.859 47.619 14.09 0.00 41.76 3.41
493 523 1.303643 GACAGGCCCCAACTTGAGG 60.304 63.158 0.00 0.00 0.00 3.86
494 524 0.178992 TTGACAGGCCCCAACTTGAG 60.179 55.000 0.00 0.00 0.00 3.02
495 525 0.260230 TTTGACAGGCCCCAACTTGA 59.740 50.000 0.00 0.00 0.00 3.02
496 526 0.389025 GTTTGACAGGCCCCAACTTG 59.611 55.000 0.00 0.00 0.00 3.16
497 527 0.261696 AGTTTGACAGGCCCCAACTT 59.738 50.000 0.00 0.00 0.00 2.66
501 531 0.032615 AAACAGTTTGACAGGCCCCA 60.033 50.000 0.00 0.00 0.00 4.96
502 532 0.389025 CAAACAGTTTGACAGGCCCC 59.611 55.000 19.79 0.00 43.26 5.80
615 645 6.446909 AAGGAGGAATGGAGATTTAGATCC 57.553 41.667 0.00 0.00 36.05 3.36
622 652 7.294245 TGAGATGATAAAGGAGGAATGGAGATT 59.706 37.037 0.00 0.00 0.00 2.40
624 654 6.146047 TGAGATGATAAAGGAGGAATGGAGA 58.854 40.000 0.00 0.00 0.00 3.71
662 697 3.924686 CCAACTGTGTCGTCTGGTAATAC 59.075 47.826 0.00 0.00 0.00 1.89
710 746 3.330720 GGAGGTGGGTGGTGGAGG 61.331 72.222 0.00 0.00 0.00 4.30
950 986 4.394712 CCTGTCTGGCACGACCCC 62.395 72.222 12.45 0.00 37.83 4.95
1008 1044 0.538746 TCAGCAGACGTGTAGGGTGA 60.539 55.000 0.00 0.00 35.63 4.02
1077 1113 1.653151 GGTACGTTGAAGCCCTGATC 58.347 55.000 0.00 0.00 0.00 2.92
1079 1115 1.122632 TGGGTACGTTGAAGCCCTGA 61.123 55.000 0.00 0.00 41.59 3.86
1107 1143 2.274645 CCTTGACCGGCATTGGCAA 61.275 57.895 11.10 0.68 43.71 4.52
1157 1193 1.978617 GATGTTGGCCCCACAGTGG 60.979 63.158 13.35 13.35 37.25 4.00
1205 1241 4.335647 CTGTTGCAGCCTCCCGGT 62.336 66.667 0.00 0.00 0.00 5.28
1231 1267 2.486472 ATTCTGCTCCTGGAACACTG 57.514 50.000 0.00 0.00 0.00 3.66
1238 1274 4.978099 ACATACCATTATTCTGCTCCTGG 58.022 43.478 0.00 0.00 0.00 4.45
1239 1275 6.648310 CAGTACATACCATTATTCTGCTCCTG 59.352 42.308 0.00 0.00 0.00 3.86
1240 1276 6.742644 GCAGTACATACCATTATTCTGCTCCT 60.743 42.308 0.00 0.00 42.16 3.69
1241 1277 5.409826 GCAGTACATACCATTATTCTGCTCC 59.590 44.000 0.00 0.00 42.16 4.70
1242 1278 6.473397 GCAGTACATACCATTATTCTGCTC 57.527 41.667 0.00 0.00 42.16 4.26
1244 1280 5.334414 GCAGCAGTACATACCATTATTCTGC 60.334 44.000 0.00 0.00 44.61 4.26
1245 1281 5.994054 AGCAGCAGTACATACCATTATTCTG 59.006 40.000 0.00 0.00 0.00 3.02
1246 1282 6.179906 AGCAGCAGTACATACCATTATTCT 57.820 37.500 0.00 0.00 0.00 2.40
1247 1283 7.819415 TCATAGCAGCAGTACATACCATTATTC 59.181 37.037 0.00 0.00 0.00 1.75
1250 1286 6.493458 TCTCATAGCAGCAGTACATACCATTA 59.507 38.462 0.00 0.00 0.00 1.90
1254 1290 4.804108 CTCTCATAGCAGCAGTACATACC 58.196 47.826 0.00 0.00 0.00 2.73
1273 1315 1.133513 TGTTGGGTTCACATTGGCTCT 60.134 47.619 0.00 0.00 0.00 4.09
1274 1316 1.327303 TGTTGGGTTCACATTGGCTC 58.673 50.000 0.00 0.00 0.00 4.70
1280 1322 3.756434 CCGAGTATTTGTTGGGTTCACAT 59.244 43.478 0.00 0.00 0.00 3.21
1328 1370 3.543680 TCACTGGAGTAGCTTATTGCC 57.456 47.619 0.00 0.00 44.23 4.52
1332 1374 4.202305 GGAAGCATCACTGGAGTAGCTTAT 60.202 45.833 11.17 0.00 38.79 1.73
1339 1381 1.002888 CTGTGGAAGCATCACTGGAGT 59.997 52.381 0.00 0.00 36.21 3.85
1346 1388 4.824479 TGAAGTATCTGTGGAAGCATCA 57.176 40.909 0.00 0.00 0.00 3.07
1353 1395 4.763073 CAGCTGAATGAAGTATCTGTGGA 58.237 43.478 8.42 0.00 0.00 4.02
1361 1403 3.370840 AATGGGCAGCTGAATGAAGTA 57.629 42.857 20.43 0.00 0.00 2.24
1365 1407 2.219080 TCAAATGGGCAGCTGAATGA 57.781 45.000 20.43 8.53 0.00 2.57
1373 1415 2.332063 AGTCGGTATCAAATGGGCAG 57.668 50.000 0.00 0.00 0.00 4.85
1381 1423 5.386060 AGATGACCTGATAGTCGGTATCAA 58.614 41.667 8.99 0.00 45.71 2.57
1382 1424 4.986783 AGATGACCTGATAGTCGGTATCA 58.013 43.478 7.80 7.80 44.52 2.15
1389 1431 3.988819 GGCAGAAGATGACCTGATAGTC 58.011 50.000 0.00 0.00 37.28 2.59
1416 1458 4.174762 GGAGGTGAAGACGTTAGATTGAC 58.825 47.826 0.00 0.00 0.00 3.18
1455 1500 4.039730 TGAAGATAGTGGCCTAAGATCAGC 59.960 45.833 3.32 0.00 0.00 4.26
1459 1504 4.561752 AGGTGAAGATAGTGGCCTAAGAT 58.438 43.478 3.32 0.00 0.00 2.40
1461 1506 3.070302 GGAGGTGAAGATAGTGGCCTAAG 59.930 52.174 3.32 0.00 0.00 2.18
1470 1515 3.386402 GGAGGACTTGGAGGTGAAGATAG 59.614 52.174 0.00 0.00 0.00 2.08
1473 1518 1.150135 AGGAGGACTTGGAGGTGAAGA 59.850 52.381 0.00 0.00 0.00 2.87
1474 1519 1.650528 AGGAGGACTTGGAGGTGAAG 58.349 55.000 0.00 0.00 0.00 3.02
1475 1520 2.904434 GTTAGGAGGACTTGGAGGTGAA 59.096 50.000 0.00 0.00 0.00 3.18
1476 1521 2.111972 AGTTAGGAGGACTTGGAGGTGA 59.888 50.000 0.00 0.00 0.00 4.02
1477 1522 2.498078 GAGTTAGGAGGACTTGGAGGTG 59.502 54.545 0.00 0.00 0.00 4.00
1478 1523 2.111972 TGAGTTAGGAGGACTTGGAGGT 59.888 50.000 0.00 0.00 0.00 3.85
1479 1524 2.763448 CTGAGTTAGGAGGACTTGGAGG 59.237 54.545 0.00 0.00 0.00 4.30
1480 1525 2.167487 GCTGAGTTAGGAGGACTTGGAG 59.833 54.545 0.00 0.00 0.00 3.86
1481 1526 2.180276 GCTGAGTTAGGAGGACTTGGA 58.820 52.381 0.00 0.00 0.00 3.53
1482 1527 2.093764 CAGCTGAGTTAGGAGGACTTGG 60.094 54.545 8.42 0.00 0.00 3.61
1483 1528 2.828520 TCAGCTGAGTTAGGAGGACTTG 59.171 50.000 13.74 0.00 0.00 3.16
1484 1529 3.176924 TCAGCTGAGTTAGGAGGACTT 57.823 47.619 13.74 0.00 0.00 3.01
1485 1530 2.909504 TCAGCTGAGTTAGGAGGACT 57.090 50.000 13.74 0.00 0.00 3.85
1486 1531 3.295973 AGATCAGCTGAGTTAGGAGGAC 58.704 50.000 22.96 3.45 0.00 3.85
1487 1532 3.678965 AGATCAGCTGAGTTAGGAGGA 57.321 47.619 22.96 0.00 0.00 3.71
1488 1533 4.280677 CCTAAGATCAGCTGAGTTAGGAGG 59.719 50.000 37.31 26.97 42.08 4.30
1489 1534 4.261994 GCCTAAGATCAGCTGAGTTAGGAG 60.262 50.000 40.64 27.93 42.08 3.69
1490 1535 3.639094 GCCTAAGATCAGCTGAGTTAGGA 59.361 47.826 40.64 21.02 42.08 2.94
1491 1536 3.244044 GGCCTAAGATCAGCTGAGTTAGG 60.244 52.174 36.70 36.70 42.23 2.69
1492 1537 3.386078 TGGCCTAAGATCAGCTGAGTTAG 59.614 47.826 27.25 27.25 0.00 2.34
1493 1538 3.133003 GTGGCCTAAGATCAGCTGAGTTA 59.867 47.826 22.96 19.13 0.00 2.24
1494 1539 2.093235 GTGGCCTAAGATCAGCTGAGTT 60.093 50.000 22.96 19.03 0.00 3.01
1495 1540 1.484240 GTGGCCTAAGATCAGCTGAGT 59.516 52.381 22.96 12.15 0.00 3.41
1496 1541 1.761784 AGTGGCCTAAGATCAGCTGAG 59.238 52.381 22.96 8.30 0.00 3.35
1497 1542 1.871418 AGTGGCCTAAGATCAGCTGA 58.129 50.000 20.79 20.79 0.00 4.26
1498 1543 2.544694 CGTAGTGGCCTAAGATCAGCTG 60.545 54.545 7.63 7.63 0.00 4.24
1499 1544 1.683917 CGTAGTGGCCTAAGATCAGCT 59.316 52.381 3.32 0.00 0.00 4.24
1500 1545 1.870167 GCGTAGTGGCCTAAGATCAGC 60.870 57.143 3.32 0.00 0.00 4.26
1501 1546 1.409064 TGCGTAGTGGCCTAAGATCAG 59.591 52.381 3.32 0.00 0.00 2.90
1502 1547 1.480789 TGCGTAGTGGCCTAAGATCA 58.519 50.000 3.32 0.00 0.00 2.92
1503 1548 2.596904 TTGCGTAGTGGCCTAAGATC 57.403 50.000 3.32 0.00 0.00 2.75
1504 1549 2.420129 CCTTTGCGTAGTGGCCTAAGAT 60.420 50.000 3.32 0.00 0.00 2.40
1505 1550 1.066430 CCTTTGCGTAGTGGCCTAAGA 60.066 52.381 3.32 0.00 0.00 2.10
1506 1551 1.066430 TCCTTTGCGTAGTGGCCTAAG 60.066 52.381 3.32 0.00 0.00 2.18
1507 1552 0.978151 TCCTTTGCGTAGTGGCCTAA 59.022 50.000 3.32 0.00 0.00 2.69
1508 1553 0.248289 GTCCTTTGCGTAGTGGCCTA 59.752 55.000 3.32 0.00 0.00 3.93
1509 1554 1.003718 GTCCTTTGCGTAGTGGCCT 60.004 57.895 3.32 0.00 0.00 5.19
1510 1555 2.038837 GGTCCTTTGCGTAGTGGCC 61.039 63.158 0.00 0.00 0.00 5.36
1511 1556 2.038837 GGGTCCTTTGCGTAGTGGC 61.039 63.158 0.00 0.00 0.00 5.01
1512 1557 0.391263 GAGGGTCCTTTGCGTAGTGG 60.391 60.000 0.00 0.00 0.00 4.00
1513 1558 0.320374 TGAGGGTCCTTTGCGTAGTG 59.680 55.000 0.00 0.00 0.00 2.74
1514 1559 1.053424 TTGAGGGTCCTTTGCGTAGT 58.947 50.000 0.00 0.00 0.00 2.73
1515 1560 2.403252 ATTGAGGGTCCTTTGCGTAG 57.597 50.000 0.00 0.00 0.00 3.51
1516 1561 2.169769 CCTATTGAGGGTCCTTTGCGTA 59.830 50.000 0.00 0.00 39.48 4.42
1517 1562 1.065418 CCTATTGAGGGTCCTTTGCGT 60.065 52.381 0.00 0.00 39.48 5.24
1518 1563 1.668419 CCTATTGAGGGTCCTTTGCG 58.332 55.000 0.00 0.00 39.48 4.85
1522 1567 1.972588 AGTGCCTATTGAGGGTCCTT 58.027 50.000 0.00 0.00 43.97 3.36
1533 1578 4.099266 TGCAACTGAAACAAAAGTGCCTAT 59.901 37.500 0.00 0.00 0.00 2.57
1560 1614 3.377172 ACGATTAAAACTATGGCACCTGC 59.623 43.478 0.00 0.00 41.14 4.85
1566 1620 6.781138 TGAATGTGACGATTAAAACTATGGC 58.219 36.000 0.00 0.00 0.00 4.40
1580 1643 7.371615 CGTATGATGAAAAAGATGAATGTGACG 59.628 37.037 0.00 0.00 0.00 4.35
1584 1647 7.277760 TCGACGTATGATGAAAAAGATGAATGT 59.722 33.333 0.00 0.00 0.00 2.71
1599 1662 4.096311 CGTGTTCTTCTTCGACGTATGAT 58.904 43.478 0.00 0.00 0.00 2.45
1606 1669 1.707637 GTCGTCGTGTTCTTCTTCGAC 59.292 52.381 6.50 6.50 45.70 4.20
1776 8125 1.745115 CCGCAATCCTTTCCTCGCA 60.745 57.895 0.00 0.00 0.00 5.10
1936 8285 3.633986 GTCCAAGGATCCTTTTGGCATAG 59.366 47.826 24.93 10.48 42.82 2.23
2048 8397 5.682234 TGCACTCCTCATGAAGATAAGAA 57.318 39.130 0.00 0.00 0.00 2.52
2341 8690 7.888514 TCCAATAGGGTAATAAGATGGATGT 57.111 36.000 0.00 0.00 38.11 3.06
2443 8792 2.155347 GCGAGCTTCATCATCTGAATCG 59.845 50.000 0.00 6.60 43.97 3.34
2676 9025 0.739813 AATCGTACCGGCTGTCTTGC 60.740 55.000 0.00 0.00 0.00 4.01
2687 9037 5.473931 ACATCATCTGCTCATAATCGTACC 58.526 41.667 0.00 0.00 0.00 3.34
2690 9040 5.695363 CAGAACATCATCTGCTCATAATCGT 59.305 40.000 0.00 0.00 40.31 3.73
2706 9056 7.497925 ACAGGTCTTTTACTTTCAGAACATC 57.502 36.000 0.00 0.00 0.00 3.06
2731 9093 8.942338 TGTACTAATTCGAAAAGATACAGCAT 57.058 30.769 15.52 0.00 0.00 3.79
2746 9116 4.811557 AGCAGCTTCGGATTGTACTAATTC 59.188 41.667 0.00 0.00 0.00 2.17
2766 9136 7.362056 GCAGGTAAAATTGACTCAAGATAAGCA 60.362 37.037 0.00 0.00 0.00 3.91
2843 9215 8.818057 CGGGAAACTGAACAAACTATAGAATAG 58.182 37.037 6.78 0.00 39.98 1.73
2867 9240 1.442769 ACAAGTCTGCATTACAGCGG 58.557 50.000 0.00 0.00 46.76 5.52
2869 9242 3.366374 GGGAAACAAGTCTGCATTACAGC 60.366 47.826 0.00 0.00 46.76 4.40
2946 9328 7.603784 TCAATTCATTCTGTCGATTTCTCTTCA 59.396 33.333 0.00 0.00 0.00 3.02
2948 9330 7.912056 TCAATTCATTCTGTCGATTTCTCTT 57.088 32.000 0.00 0.00 0.00 2.85
2957 9339 7.191551 ACTATGCAATTCAATTCATTCTGTCG 58.808 34.615 0.00 0.00 0.00 4.35
2964 9346 9.499479 CTACTCCTACTATGCAATTCAATTCAT 57.501 33.333 0.00 2.09 0.00 2.57
2971 9353 9.425577 GTTATTCCTACTCCTACTATGCAATTC 57.574 37.037 0.00 0.00 0.00 2.17
2974 9356 9.650714 TTAGTTATTCCTACTCCTACTATGCAA 57.349 33.333 0.00 0.00 0.00 4.08
2976 9441 9.075678 TGTTAGTTATTCCTACTCCTACTATGC 57.924 37.037 0.00 0.00 0.00 3.14
2980 9445 8.334734 TCTGTGTTAGTTATTCCTACTCCTACT 58.665 37.037 0.00 0.00 0.00 2.57
2981 9446 8.517062 TCTGTGTTAGTTATTCCTACTCCTAC 57.483 38.462 0.00 0.00 0.00 3.18
3017 9484 8.050930 TGGGAGAACTTAAAAGTGTTTCTAACT 58.949 33.333 0.00 0.00 39.66 2.24
3018 9485 8.217131 TGGGAGAACTTAAAAGTGTTTCTAAC 57.783 34.615 0.00 0.00 39.66 2.34
3019 9486 8.810990 TTGGGAGAACTTAAAAGTGTTTCTAA 57.189 30.769 0.00 0.00 39.66 2.10
3020 9487 8.990163 ATTGGGAGAACTTAAAAGTGTTTCTA 57.010 30.769 0.00 0.00 39.66 2.10
3022 9489 8.942338 AAATTGGGAGAACTTAAAAGTGTTTC 57.058 30.769 0.00 0.00 39.66 2.78
3023 9490 7.985184 GGAAATTGGGAGAACTTAAAAGTGTTT 59.015 33.333 0.00 0.00 39.66 2.83
3024 9491 7.344612 AGGAAATTGGGAGAACTTAAAAGTGTT 59.655 33.333 0.00 0.00 39.66 3.32
3025 9492 6.839134 AGGAAATTGGGAGAACTTAAAAGTGT 59.161 34.615 0.00 0.00 39.66 3.55
3026 9493 7.147976 CAGGAAATTGGGAGAACTTAAAAGTG 58.852 38.462 0.00 0.00 39.66 3.16
3027 9494 6.839134 ACAGGAAATTGGGAGAACTTAAAAGT 59.161 34.615 0.00 0.00 42.04 2.66
3050 9517 2.675423 AGGGCTCGCGACTACACA 60.675 61.111 3.71 0.00 0.00 3.72
3072 9539 2.683968 TCGTAGGCTACAAACAGCTTG 58.316 47.619 23.46 4.95 41.50 4.01
3080 9547 4.614993 GCAAAGCAAAATCGTAGGCTACAA 60.615 41.667 23.46 6.62 35.11 2.41
3092 9559 4.525996 ACAAAAGGGAAGCAAAGCAAAAT 58.474 34.783 0.00 0.00 0.00 1.82
3101 9568 5.070313 AGCTATCAAAAACAAAAGGGAAGCA 59.930 36.000 0.00 0.00 0.00 3.91
3102 9569 5.541845 AGCTATCAAAAACAAAAGGGAAGC 58.458 37.500 0.00 0.00 0.00 3.86
3132 9599 9.595823 GTCTGTATTAAGTGTATTAGAAGGCAA 57.404 33.333 0.00 0.00 0.00 4.52
3133 9600 8.755028 TGTCTGTATTAAGTGTATTAGAAGGCA 58.245 33.333 0.00 0.00 0.00 4.75
3134 9601 9.595823 TTGTCTGTATTAAGTGTATTAGAAGGC 57.404 33.333 0.00 0.00 0.00 4.35
3156 9710 1.298041 CGCCCAAACACGTGTTGTC 60.298 57.895 32.89 19.88 37.51 3.18
3157 9711 2.795297 CGCCCAAACACGTGTTGT 59.205 55.556 32.89 19.90 41.74 3.32
3159 9713 2.214181 TTTGCGCCCAAACACGTGTT 62.214 50.000 27.70 27.70 40.50 3.32
3192 9746 3.942748 TGTTGACTCGCTGGTAACTTTTT 59.057 39.130 0.00 0.00 37.61 1.94
3193 9747 3.537580 TGTTGACTCGCTGGTAACTTTT 58.462 40.909 0.00 0.00 37.61 2.27
3194 9748 3.131396 CTGTTGACTCGCTGGTAACTTT 58.869 45.455 0.00 0.00 37.61 2.66
3195 9749 2.548067 CCTGTTGACTCGCTGGTAACTT 60.548 50.000 0.00 0.00 37.61 2.66
3199 9753 1.542915 GTACCTGTTGACTCGCTGGTA 59.457 52.381 0.00 0.00 37.89 3.25
3200 9754 0.317479 GTACCTGTTGACTCGCTGGT 59.683 55.000 0.00 0.00 39.64 4.00
3201 9755 0.603569 AGTACCTGTTGACTCGCTGG 59.396 55.000 0.00 0.00 0.00 4.85
3202 9756 1.000163 ACAGTACCTGTTGACTCGCTG 60.000 52.381 0.00 0.00 42.59 5.18
3203 9757 1.329256 ACAGTACCTGTTGACTCGCT 58.671 50.000 0.00 0.00 42.59 4.93
3204 9758 3.888093 ACAGTACCTGTTGACTCGC 57.112 52.632 0.00 0.00 42.59 5.03
3214 9768 5.057149 CACTTTCTAAGCACAACAGTACCT 58.943 41.667 0.00 0.00 0.00 3.08
3216 9770 5.986004 ACACTTTCTAAGCACAACAGTAC 57.014 39.130 0.00 0.00 0.00 2.73
3253 9807 9.466497 TCAAAGGCTAACTGAATTGAATCTTAT 57.534 29.630 0.00 0.00 0.00 1.73
3254 9808 8.862325 TCAAAGGCTAACTGAATTGAATCTTA 57.138 30.769 0.00 0.00 0.00 2.10
3255 9809 7.667219 TCTCAAAGGCTAACTGAATTGAATCTT 59.333 33.333 0.00 0.00 0.00 2.40
3256 9810 7.120432 GTCTCAAAGGCTAACTGAATTGAATCT 59.880 37.037 0.00 0.00 0.00 2.40
3257 9811 7.247019 GTCTCAAAGGCTAACTGAATTGAATC 58.753 38.462 0.00 0.00 0.00 2.52
3258 9812 6.128172 CGTCTCAAAGGCTAACTGAATTGAAT 60.128 38.462 0.00 0.00 0.00 2.57
3259 9813 5.179368 CGTCTCAAAGGCTAACTGAATTGAA 59.821 40.000 0.00 0.00 0.00 2.69
3260 9814 4.690748 CGTCTCAAAGGCTAACTGAATTGA 59.309 41.667 0.00 0.00 0.00 2.57
3261 9815 4.452455 ACGTCTCAAAGGCTAACTGAATTG 59.548 41.667 0.00 0.00 0.00 2.32
3262 9816 4.642429 ACGTCTCAAAGGCTAACTGAATT 58.358 39.130 0.00 0.00 0.00 2.17
3263 9817 4.273148 ACGTCTCAAAGGCTAACTGAAT 57.727 40.909 0.00 0.00 0.00 2.57
3264 9818 3.746045 ACGTCTCAAAGGCTAACTGAA 57.254 42.857 0.00 0.00 0.00 3.02
3265 9819 3.192844 CCTACGTCTCAAAGGCTAACTGA 59.807 47.826 0.00 0.00 0.00 3.41
3266 9820 3.512680 CCTACGTCTCAAAGGCTAACTG 58.487 50.000 0.00 0.00 0.00 3.16
3267 9821 2.496470 CCCTACGTCTCAAAGGCTAACT 59.504 50.000 0.00 0.00 0.00 2.24
3268 9822 2.889852 CCCTACGTCTCAAAGGCTAAC 58.110 52.381 0.00 0.00 0.00 2.34
3269 9823 1.206371 GCCCTACGTCTCAAAGGCTAA 59.794 52.381 0.00 0.00 37.42 3.09
3270 9824 0.822164 GCCCTACGTCTCAAAGGCTA 59.178 55.000 0.00 0.00 37.42 3.93
3271 9825 1.192146 TGCCCTACGTCTCAAAGGCT 61.192 55.000 0.00 0.00 41.08 4.58
3272 9826 0.107654 ATGCCCTACGTCTCAAAGGC 60.108 55.000 0.00 0.00 40.87 4.35
3273 9827 1.802880 CGATGCCCTACGTCTCAAAGG 60.803 57.143 0.00 0.00 31.56 3.11
3274 9828 1.560923 CGATGCCCTACGTCTCAAAG 58.439 55.000 0.00 0.00 31.56 2.77
3275 9829 0.459585 GCGATGCCCTACGTCTCAAA 60.460 55.000 0.00 0.00 31.56 2.69
3276 9830 1.141019 GCGATGCCCTACGTCTCAA 59.859 57.895 0.00 0.00 31.56 3.02
3277 9831 2.805546 GCGATGCCCTACGTCTCA 59.194 61.111 0.00 0.00 31.56 3.27
3278 9832 2.353607 CGCGATGCCCTACGTCTC 60.354 66.667 0.00 0.00 31.56 3.36
3279 9833 4.570663 GCGCGATGCCCTACGTCT 62.571 66.667 12.10 0.00 37.76 4.18
3283 9837 3.925238 CAACGCGCGATGCCCTAC 61.925 66.667 39.36 0.00 42.08 3.18
3296 9850 3.648982 TTGCCAGCTGTCGCAACG 61.649 61.111 21.80 3.22 39.96 4.10
3298 9852 1.823470 AAGTTGCCAGCTGTCGCAA 60.823 52.632 21.80 21.80 42.48 4.85
3299 9853 2.203195 AAGTTGCCAGCTGTCGCA 60.203 55.556 13.81 13.31 39.10 5.10
3300 9854 2.253452 CAAGTTGCCAGCTGTCGC 59.747 61.111 13.81 10.56 0.00 5.19
3301 9855 2.949106 CCAAGTTGCCAGCTGTCG 59.051 61.111 13.81 0.00 0.00 4.35
3302 9856 1.900498 AGCCAAGTTGCCAGCTGTC 60.900 57.895 13.81 0.00 33.41 3.51
3303 9857 2.196776 AGCCAAGTTGCCAGCTGT 59.803 55.556 13.81 0.00 33.41 4.40
3304 9858 2.649034 CAGCCAAGTTGCCAGCTG 59.351 61.111 15.28 15.28 45.92 4.24
3305 9859 1.602888 CTCAGCCAAGTTGCCAGCT 60.603 57.895 0.00 0.00 35.52 4.24
3306 9860 1.860484 GACTCAGCCAAGTTGCCAGC 61.860 60.000 0.00 0.00 0.00 4.85
3307 9861 0.250640 AGACTCAGCCAAGTTGCCAG 60.251 55.000 0.00 0.00 0.00 4.85
3308 9862 0.535780 CAGACTCAGCCAAGTTGCCA 60.536 55.000 0.00 0.00 0.00 4.92
3309 9863 0.536006 ACAGACTCAGCCAAGTTGCC 60.536 55.000 0.00 0.00 0.00 4.52
3310 9864 1.801178 GTACAGACTCAGCCAAGTTGC 59.199 52.381 0.00 0.00 0.00 4.17
3311 9865 2.802816 GTGTACAGACTCAGCCAAGTTG 59.197 50.000 0.00 0.00 0.00 3.16
3312 9866 2.545952 CGTGTACAGACTCAGCCAAGTT 60.546 50.000 0.00 0.00 0.00 2.66
3313 9867 1.000163 CGTGTACAGACTCAGCCAAGT 60.000 52.381 0.00 0.00 0.00 3.16
3314 9868 1.269723 TCGTGTACAGACTCAGCCAAG 59.730 52.381 0.00 0.00 0.00 3.61
3315 9869 1.269723 CTCGTGTACAGACTCAGCCAA 59.730 52.381 0.00 0.00 0.00 4.52
3316 9870 0.881796 CTCGTGTACAGACTCAGCCA 59.118 55.000 0.00 0.00 0.00 4.75
3317 9871 1.166129 TCTCGTGTACAGACTCAGCC 58.834 55.000 0.00 0.00 0.00 4.85
3318 9872 2.857618 CTTCTCGTGTACAGACTCAGC 58.142 52.381 0.00 0.00 0.00 4.26
3319 9873 2.414824 GGCTTCTCGTGTACAGACTCAG 60.415 54.545 0.00 0.00 0.00 3.35
3320 9874 1.540267 GGCTTCTCGTGTACAGACTCA 59.460 52.381 0.00 0.00 0.00 3.41
3321 9875 1.540267 TGGCTTCTCGTGTACAGACTC 59.460 52.381 0.00 0.00 0.00 3.36
3322 9876 1.542030 CTGGCTTCTCGTGTACAGACT 59.458 52.381 0.00 0.00 0.00 3.24
3323 9877 1.983972 CTGGCTTCTCGTGTACAGAC 58.016 55.000 0.00 0.00 0.00 3.51
3324 9878 0.243907 GCTGGCTTCTCGTGTACAGA 59.756 55.000 0.00 0.00 0.00 3.41
3325 9879 0.737715 GGCTGGCTTCTCGTGTACAG 60.738 60.000 0.00 0.00 0.00 2.74
3347 9901 4.207891 TCCATGAGCAGGAAAGTAGTTC 57.792 45.455 0.00 0.00 35.28 3.01
3370 9924 1.927174 CTAGGCACGGTTGATCTTTCG 59.073 52.381 0.00 0.00 0.00 3.46
3399 10604 1.853114 TAGATGATCCGGTCGAGCGC 61.853 60.000 30.24 17.69 0.00 5.92
3404 10609 2.750166 AGTAGCATAGATGATCCGGTCG 59.250 50.000 0.00 0.00 0.00 4.79
3428 10633 1.372582 AGCAGCATTACATGGTCACG 58.627 50.000 0.00 0.00 39.29 4.35
3480 10685 7.967890 ATCCCAAAAATGTTTGTCAAATCTC 57.032 32.000 7.58 0.00 42.26 2.75
3487 10692 8.831715 ACTATCAAATCCCAAAAATGTTTGTC 57.168 30.769 7.58 0.00 42.26 3.18
3501 10706 8.921353 TCCTGACTAGTACTACTATCAAATCC 57.079 38.462 0.00 0.00 29.08 3.01
3514 10719 5.164954 CAGCAACTTCTTCCTGACTAGTAC 58.835 45.833 0.00 0.00 0.00 2.73
3623 10843 4.078639 GGATCCTCCTACCAATCAACTG 57.921 50.000 3.84 0.00 32.53 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.