Multiple sequence alignment - TraesCS3D01G064700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G064700 chr3D 100.000 3932 0 0 1 3932 28496678 28492747 0.000000e+00 7262.0
1 TraesCS3D01G064700 chr3D 82.225 2813 352 71 842 3564 27655823 27658577 0.000000e+00 2289.0
2 TraesCS3D01G064700 chr3D 89.535 1376 111 18 1760 3121 28129977 28128621 0.000000e+00 1712.0
3 TraesCS3D01G064700 chr3D 90.266 1315 112 5 1154 2464 27760363 27761665 0.000000e+00 1705.0
4 TraesCS3D01G064700 chr3D 91.505 1236 80 12 1760 2983 28134804 28133582 0.000000e+00 1677.0
5 TraesCS3D01G064700 chr3D 83.282 323 42 8 842 1163 27759592 27759903 1.790000e-73 287.0
6 TraesCS3D01G064700 chr3D 73.820 699 142 27 843 1517 27651487 27652168 5.080000e-59 239.0
7 TraesCS3D01G064700 chr3D 73.789 702 137 32 842 1517 28135724 28135044 2.360000e-57 233.0
8 TraesCS3D01G064700 chr3D 93.548 62 3 1 505 566 428242725 428242665 1.500000e-14 91.6
9 TraesCS3D01G064700 chr3D 87.324 71 2 2 569 639 5341858 5341795 1.520000e-09 75.0
10 TraesCS3D01G064700 chr3B 94.147 3229 151 24 722 3932 47455042 47451834 0.000000e+00 4881.0
11 TraesCS3D01G064700 chr3B 85.844 1872 171 46 1760 3564 46282218 46284062 0.000000e+00 1903.0
12 TraesCS3D01G064700 chr3B 93.769 321 17 3 947 1265 50355767 50356086 2.750000e-131 479.0
13 TraesCS3D01G064700 chr3B 83.836 464 45 17 13 463 47455752 47455306 7.860000e-112 414.0
14 TraesCS3D01G064700 chr3B 88.608 237 16 7 723 955 50350222 50350451 1.080000e-70 278.0
15 TraesCS3D01G064700 chr3B 72.576 660 142 26 881 1517 46281335 46281978 3.120000e-41 180.0
16 TraesCS3D01G064700 chr3B 85.897 78 11 0 562 639 116817503 116817426 2.520000e-12 84.2
17 TraesCS3D01G064700 chr3B 81.522 92 10 6 483 569 779138516 779138605 7.050000e-08 69.4
18 TraesCS3D01G064700 chr3B 97.222 36 0 1 693 728 47455111 47455077 4.240000e-05 60.2
19 TraesCS3D01G064700 chr3A 92.902 2860 151 26 722 3564 38254328 38251504 0.000000e+00 4109.0
20 TraesCS3D01G064700 chr3A 90.504 1390 102 13 1760 3134 38021525 38020151 0.000000e+00 1808.0
21 TraesCS3D01G064700 chr3A 90.094 1282 103 13 1764 3032 38035726 38034456 0.000000e+00 1642.0
22 TraesCS3D01G064700 chr3A 83.179 1831 268 22 1037 2847 10531986 10530176 0.000000e+00 1639.0
23 TraesCS3D01G064700 chr3A 84.839 310 28 11 274 566 38254715 38254408 1.070000e-75 294.0
24 TraesCS3D01G064700 chr3A 73.930 771 170 25 959 1716 38036637 38035885 8.320000e-72 281.0
25 TraesCS3D01G064700 chr3A 86.667 135 14 4 372 502 38255276 38255142 3.170000e-31 147.0
26 TraesCS3D01G064700 chr3A 86.726 113 9 3 193 305 38261967 38261861 1.920000e-23 121.0
27 TraesCS3D01G064700 chr3A 87.619 105 8 2 773 875 38260879 38260778 2.480000e-22 117.0
28 TraesCS3D01G064700 chr3A 90.476 84 7 1 3849 3932 38235376 38235294 4.150000e-20 110.0
29 TraesCS3D01G064700 chr3A 87.234 94 8 3 778 869 38255038 38254947 1.930000e-18 104.0
30 TraesCS3D01G064700 chr3A 90.741 54 3 2 680 732 38254411 38254359 1.960000e-08 71.3
31 TraesCS3D01G064700 chr2D 75.951 736 149 21 1000 1715 533856649 533857376 1.740000e-93 353.0
32 TraesCS3D01G064700 chr2D 91.935 62 2 3 505 566 562221049 562221107 2.520000e-12 84.2
33 TraesCS3D01G064700 chr2B 78.947 475 90 7 1094 1562 634171883 634172353 8.200000e-82 315.0
34 TraesCS3D01G064700 chr2B 79.817 109 11 8 564 669 164900371 164900471 7.050000e-08 69.4
35 TraesCS3D01G064700 chr7B 88.608 79 8 1 562 640 254488576 254488499 1.160000e-15 95.3
36 TraesCS3D01G064700 chr7B 85.366 82 11 1 559 640 208276698 208276778 2.520000e-12 84.2
37 TraesCS3D01G064700 chr7B 97.222 36 1 0 569 604 556689195 556689160 1.180000e-05 62.1
38 TraesCS3D01G064700 chr4B 87.500 72 7 1 569 640 413521287 413521356 9.060000e-12 82.4
39 TraesCS3D01G064700 chr1B 88.333 60 4 1 505 564 31327732 31327676 7.050000e-08 69.4
40 TraesCS3D01G064700 chr1B 89.583 48 5 0 641 688 359434099 359434052 1.180000e-05 62.1
41 TraesCS3D01G064700 chr7A 83.333 78 7 4 563 640 657371643 657371572 2.540000e-07 67.6
42 TraesCS3D01G064700 chr6A 86.885 61 7 1 505 565 397245970 397246029 2.540000e-07 67.6
43 TraesCS3D01G064700 chr2A 86.667 60 6 1 505 564 10577832 10577889 9.120000e-07 65.8
44 TraesCS3D01G064700 chr1A 86.667 60 6 1 505 564 27244093 27244036 9.120000e-07 65.8
45 TraesCS3D01G064700 chr6D 92.683 41 3 0 642 682 9470873 9470833 4.240000e-05 60.2
46 TraesCS3D01G064700 chr1D 85.714 56 6 1 510 565 19880444 19880391 1.530000e-04 58.4
47 TraesCS3D01G064700 chr7D 90.698 43 3 1 641 683 434783949 434783908 5.490000e-04 56.5
48 TraesCS3D01G064700 chr7D 94.286 35 2 0 642 676 295855468 295855502 2.000000e-03 54.7
49 TraesCS3D01G064700 chr4A 90.698 43 3 1 641 683 239413572 239413613 5.490000e-04 56.5
50 TraesCS3D01G064700 chr4A 94.595 37 1 1 565 601 681905609 681905644 5.490000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G064700 chr3D 28492747 28496678 3931 True 7262.000000 7262 100.0000 1 3932 1 chr3D.!!$R2 3931
1 TraesCS3D01G064700 chr3D 27651487 27658577 7090 False 1264.000000 2289 78.0225 842 3564 2 chr3D.!!$F1 2722
2 TraesCS3D01G064700 chr3D 28128621 28135724 7103 True 1207.333333 1712 84.9430 842 3121 3 chr3D.!!$R4 2279
3 TraesCS3D01G064700 chr3D 27759592 27761665 2073 False 996.000000 1705 86.7740 842 2464 2 chr3D.!!$F2 1622
4 TraesCS3D01G064700 chr3B 47451834 47455752 3918 True 1785.066667 4881 91.7350 13 3932 3 chr3B.!!$R2 3919
5 TraesCS3D01G064700 chr3B 46281335 46284062 2727 False 1041.500000 1903 79.2100 881 3564 2 chr3B.!!$F4 2683
6 TraesCS3D01G064700 chr3A 38020151 38021525 1374 True 1808.000000 1808 90.5040 1760 3134 1 chr3A.!!$R2 1374
7 TraesCS3D01G064700 chr3A 10530176 10531986 1810 True 1639.000000 1639 83.1790 1037 2847 1 chr3A.!!$R1 1810
8 TraesCS3D01G064700 chr3A 38034456 38036637 2181 True 961.500000 1642 82.0120 959 3032 2 chr3A.!!$R4 2073
9 TraesCS3D01G064700 chr3A 38251504 38255276 3772 True 945.060000 4109 88.4766 274 3564 5 chr3A.!!$R5 3290
10 TraesCS3D01G064700 chr2D 533856649 533857376 727 False 353.000000 353 75.9510 1000 1715 1 chr2D.!!$F1 715

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
291 293 0.322546 CCCCAACCACCAGCTACTTC 60.323 60.0 0.00 0.0 0.00 3.01 F
1650 6903 0.111061 GCTACCCCATGGATGATGCA 59.889 55.0 15.22 0.0 34.81 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1986 7365 0.179179 GCTTGTCTGCGAATTGCTCC 60.179 55.0 0.00 0.0 46.63 4.70 R
3590 13979 0.462581 TCACCAGCGGCAATCTCATC 60.463 55.0 1.45 0.0 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.166459 TCACCATAGCTCGAAACCTCAG 59.834 50.000 0.00 0.00 0.00 3.35
44 45 2.093973 CACCATAGCTCGAAACCTCAGT 60.094 50.000 0.00 0.00 0.00 3.41
52 53 0.660300 CGAAACCTCAGTTTTGGCGC 60.660 55.000 0.00 0.00 46.25 6.53
53 54 0.668535 GAAACCTCAGTTTTGGCGCT 59.331 50.000 7.64 0.00 46.25 5.92
66 67 0.670706 TGGCGCTGCAAAATGTACAA 59.329 45.000 7.64 0.00 0.00 2.41
100 101 3.374058 CCACAATTACCTTCCGCTAGTTG 59.626 47.826 0.00 0.00 0.00 3.16
102 103 4.092968 CACAATTACCTTCCGCTAGTTGAC 59.907 45.833 0.00 0.00 0.00 3.18
133 134 3.434637 CACAAAGAACACAAGGTTTCCG 58.565 45.455 0.00 0.00 40.63 4.30
141 142 1.971695 CAAGGTTTCCGCCACCCTC 60.972 63.158 0.00 0.00 34.44 4.30
163 164 1.073897 AGGGAGCAAACCTGACAGC 59.926 57.895 0.00 0.00 36.85 4.40
167 168 1.508632 GAGCAAACCTGACAGCGTTA 58.491 50.000 9.00 0.00 0.00 3.18
199 200 3.209410 GAGACAAGGCTCCATATGGTTG 58.791 50.000 21.28 18.90 36.34 3.77
200 201 2.846206 AGACAAGGCTCCATATGGTTGA 59.154 45.455 22.89 5.77 36.34 3.18
201 202 3.461085 AGACAAGGCTCCATATGGTTGAT 59.539 43.478 22.89 12.05 36.34 2.57
202 203 3.559069 ACAAGGCTCCATATGGTTGATG 58.441 45.455 22.89 17.46 36.34 3.07
206 208 1.479205 GCTCCATATGGTTGATGGCCA 60.479 52.381 21.28 8.56 43.17 5.36
223 225 0.742281 CCAGTCAACGAGGCATCCAG 60.742 60.000 0.00 0.00 0.00 3.86
274 276 3.993535 CTGCCTTCAGCTTGACCC 58.006 61.111 0.00 0.00 44.23 4.46
278 280 1.527433 GCCTTCAGCTTGACCCCAAC 61.527 60.000 0.00 0.00 38.99 3.77
281 283 0.467290 TTCAGCTTGACCCCAACCAC 60.467 55.000 0.00 0.00 0.00 4.16
285 287 1.903404 CTTGACCCCAACCACCAGC 60.903 63.158 0.00 0.00 0.00 4.85
291 293 0.322546 CCCCAACCACCAGCTACTTC 60.323 60.000 0.00 0.00 0.00 3.01
312 317 3.251729 TCTTGCAAAGTGATCACTCTTGC 59.748 43.478 36.78 36.78 46.34 4.01
318 323 1.079503 GTGATCACTCTTGCCCGTTC 58.920 55.000 18.83 0.00 0.00 3.95
324 329 1.371183 CTCTTGCCCGTTCCTGTCA 59.629 57.895 0.00 0.00 0.00 3.58
339 344 2.559668 CCTGTCACAACAAAGCATGGAT 59.440 45.455 0.00 0.00 34.24 3.41
341 346 3.220940 TGTCACAACAAAGCATGGATCA 58.779 40.909 0.00 0.00 30.70 2.92
354 364 4.019174 GCATGGATCAGGAAGGAAGAAAA 58.981 43.478 0.00 0.00 0.00 2.29
355 365 4.097589 GCATGGATCAGGAAGGAAGAAAAG 59.902 45.833 0.00 0.00 0.00 2.27
356 366 4.307032 TGGATCAGGAAGGAAGAAAAGG 57.693 45.455 0.00 0.00 0.00 3.11
364 374 0.668535 AGGAAGAAAAGGCGTGCAAC 59.331 50.000 0.00 0.00 0.00 4.17
369 379 0.874175 GAAAAGGCGTGCAACCCAAC 60.874 55.000 3.41 0.00 30.65 3.77
370 380 1.608717 AAAAGGCGTGCAACCCAACA 61.609 50.000 3.41 0.00 30.65 3.33
456 473 2.665165 AGCCTACTCTCTGATGGTGAG 58.335 52.381 0.00 0.00 40.30 3.51
458 475 2.360801 GCCTACTCTCTGATGGTGAGAC 59.639 54.545 0.00 0.00 38.49 3.36
460 477 4.277476 CCTACTCTCTGATGGTGAGACTT 58.723 47.826 0.00 0.00 38.49 3.01
487 505 6.200665 CCAAACTGTGTGTTTTATTCATGTGG 59.799 38.462 0.00 0.00 45.69 4.17
491 509 6.978080 ACTGTGTGTTTTATTCATGTGGAAAC 59.022 34.615 0.00 1.76 39.39 2.78
507 525 4.901868 TGGAAACACCTATGTAACACTCC 58.098 43.478 0.00 0.00 38.45 3.85
508 526 3.930848 GGAAACACCTATGTAACACTCCG 59.069 47.826 0.00 0.00 38.45 4.63
509 527 4.562143 GGAAACACCTATGTAACACTCCGT 60.562 45.833 0.00 0.00 38.45 4.69
510 528 5.336690 GGAAACACCTATGTAACACTCCGTA 60.337 44.000 0.00 0.00 38.45 4.02
511 529 5.726980 AACACCTATGTAACACTCCGTAA 57.273 39.130 0.00 0.00 38.45 3.18
512 530 5.927281 ACACCTATGTAACACTCCGTAAT 57.073 39.130 0.00 0.00 37.26 1.89
513 531 6.290294 ACACCTATGTAACACTCCGTAATT 57.710 37.500 0.00 0.00 37.26 1.40
514 532 6.704310 ACACCTATGTAACACTCCGTAATTT 58.296 36.000 0.00 0.00 37.26 1.82
515 533 7.163441 ACACCTATGTAACACTCCGTAATTTT 58.837 34.615 0.00 0.00 37.26 1.82
516 534 7.662669 ACACCTATGTAACACTCCGTAATTTTT 59.337 33.333 0.00 0.00 37.26 1.94
581 675 8.840200 TGTCTTATATATTACTCCCTCCATCC 57.160 38.462 0.00 0.00 0.00 3.51
582 676 7.844779 TGTCTTATATATTACTCCCTCCATCCC 59.155 40.741 0.00 0.00 0.00 3.85
584 678 8.587244 TCTTATATATTACTCCCTCCATCCCAT 58.413 37.037 0.00 0.00 0.00 4.00
588 682 5.786121 ATTACTCCCTCCATCCCATAATG 57.214 43.478 0.00 0.00 0.00 1.90
591 685 4.577096 ACTCCCTCCATCCCATAATGTAA 58.423 43.478 0.00 0.00 0.00 2.41
592 686 4.981647 ACTCCCTCCATCCCATAATGTAAA 59.018 41.667 0.00 0.00 0.00 2.01
595 689 5.194740 TCCCTCCATCCCATAATGTAAAACA 59.805 40.000 0.00 0.00 0.00 2.83
646 740 8.807948 AAAATGTCTTACAATATGGCTAGTGT 57.192 30.769 0.00 3.40 39.36 3.55
647 741 8.438676 AAATGTCTTACAATATGGCTAGTGTC 57.561 34.615 0.00 0.00 37.37 3.67
648 742 6.538945 TGTCTTACAATATGGCTAGTGTCA 57.461 37.500 0.00 0.00 37.37 3.58
649 743 6.941857 TGTCTTACAATATGGCTAGTGTCAA 58.058 36.000 0.00 0.00 37.37 3.18
650 744 7.390823 TGTCTTACAATATGGCTAGTGTCAAA 58.609 34.615 0.00 0.00 37.37 2.69
651 745 7.880713 TGTCTTACAATATGGCTAGTGTCAAAA 59.119 33.333 0.00 0.00 37.37 2.44
652 746 8.726988 GTCTTACAATATGGCTAGTGTCAAAAA 58.273 33.333 0.00 0.00 37.37 1.94
672 766 6.949578 AAAAATGTCTTGCATTATGGAACG 57.050 33.333 0.00 0.00 46.29 3.95
673 767 4.637483 AATGTCTTGCATTATGGAACGG 57.363 40.909 0.00 0.00 45.26 4.44
674 768 3.342377 TGTCTTGCATTATGGAACGGA 57.658 42.857 0.00 0.00 0.00 4.69
675 769 3.270027 TGTCTTGCATTATGGAACGGAG 58.730 45.455 0.00 0.00 0.00 4.63
676 770 3.055458 TGTCTTGCATTATGGAACGGAGA 60.055 43.478 0.00 0.00 0.00 3.71
677 771 3.557595 GTCTTGCATTATGGAACGGAGAG 59.442 47.826 0.00 0.00 0.00 3.20
678 772 3.450817 TCTTGCATTATGGAACGGAGAGA 59.549 43.478 0.00 0.00 0.00 3.10
679 773 3.904800 TGCATTATGGAACGGAGAGAA 57.095 42.857 0.00 0.00 0.00 2.87
680 774 4.422073 TGCATTATGGAACGGAGAGAAT 57.578 40.909 0.00 0.00 0.00 2.40
681 775 5.545063 TGCATTATGGAACGGAGAGAATA 57.455 39.130 0.00 0.00 0.00 1.75
682 776 5.297547 TGCATTATGGAACGGAGAGAATAC 58.702 41.667 0.00 0.00 0.00 1.89
683 777 5.070446 TGCATTATGGAACGGAGAGAATACT 59.930 40.000 0.00 0.00 0.00 2.12
684 778 6.266786 TGCATTATGGAACGGAGAGAATACTA 59.733 38.462 0.00 0.00 0.00 1.82
685 779 7.152645 GCATTATGGAACGGAGAGAATACTAA 58.847 38.462 0.00 0.00 0.00 2.24
686 780 7.329717 GCATTATGGAACGGAGAGAATACTAAG 59.670 40.741 0.00 0.00 0.00 2.18
687 781 7.893124 TTATGGAACGGAGAGAATACTAAGT 57.107 36.000 0.00 0.00 0.00 2.24
688 782 6.793505 ATGGAACGGAGAGAATACTAAGTT 57.206 37.500 0.00 0.00 0.00 2.66
689 783 7.893124 ATGGAACGGAGAGAATACTAAGTTA 57.107 36.000 0.00 0.00 0.00 2.24
690 784 7.707624 TGGAACGGAGAGAATACTAAGTTAA 57.292 36.000 0.00 0.00 0.00 2.01
691 785 8.125978 TGGAACGGAGAGAATACTAAGTTAAA 57.874 34.615 0.00 0.00 0.00 1.52
744 879 2.084610 TGCGGATATACAGATGCAGC 57.915 50.000 0.00 0.00 0.00 5.25
755 890 1.203994 CAGATGCAGCTCCCCTTTTTG 59.796 52.381 0.00 0.00 0.00 2.44
756 891 0.533951 GATGCAGCTCCCCTTTTTGG 59.466 55.000 0.00 0.00 0.00 3.28
774 910 1.893137 TGGGAAGACGCGCAGATATAT 59.107 47.619 5.73 0.00 0.00 0.86
775 911 3.086282 TGGGAAGACGCGCAGATATATA 58.914 45.455 5.73 0.00 0.00 0.86
776 912 3.508402 TGGGAAGACGCGCAGATATATAA 59.492 43.478 5.73 0.00 0.00 0.98
804 943 2.195922 GCAAGCAAACAAGTTCCACAG 58.804 47.619 0.00 0.00 0.00 3.66
821 960 2.026822 CACAGTCAAGCCTGGTCCTATT 60.027 50.000 0.00 0.00 36.75 1.73
823 962 4.040755 ACAGTCAAGCCTGGTCCTATTAT 58.959 43.478 0.00 0.00 36.75 1.28
826 965 4.721776 AGTCAAGCCTGGTCCTATTATCAA 59.278 41.667 0.00 0.00 0.00 2.57
831 970 4.137543 GCCTGGTCCTATTATCAAACAGG 58.862 47.826 0.00 0.00 45.29 4.00
1572 6825 3.323758 TACCAGGAGCGCGGCAAAT 62.324 57.895 8.83 0.00 0.00 2.32
1650 6903 0.111061 GCTACCCCATGGATGATGCA 59.889 55.000 15.22 0.00 34.81 3.96
1732 7072 2.972505 AAGCAACACCGCCGAGTG 60.973 61.111 4.51 4.51 43.65 3.51
1797 7164 4.653341 ACAACCATGAAACCAAAATCCTCA 59.347 37.500 0.00 0.00 0.00 3.86
1897 7276 1.007038 CGAAGAACCCAACGACGGA 60.007 57.895 0.00 0.00 0.00 4.69
1950 7329 0.984995 GGGAGCTACAAGGAACACCT 59.015 55.000 0.00 0.00 35.26 4.00
1986 7365 4.145876 TGAACAGCTAAAATCAGCAACG 57.854 40.909 0.00 0.00 44.35 4.10
2094 7473 0.032117 TGGATCGATCTGGTCAGGGT 60.032 55.000 23.96 0.00 0.00 4.34
2118 7497 2.979240 AGAGAATTTTCGGCAGAGGTC 58.021 47.619 0.00 0.00 0.00 3.85
2304 7683 4.083217 ACGCGGTGCAAAATTATAACTCAA 60.083 37.500 12.47 0.00 0.00 3.02
2397 7776 9.347240 CCACAAAATATCCTCTTAGATGACAAT 57.653 33.333 0.00 0.00 0.00 2.71
2425 7804 8.587608 TCAATGCTAAACTTTCTGATTTTGGAT 58.412 29.630 0.00 0.00 0.00 3.41
2517 7896 4.267536 CTCCTGAATGGTTGACATCACAT 58.732 43.478 0.00 0.00 39.40 3.21
2681 8060 7.279981 TCGGTTGGTAGATTTGATTGACAATAG 59.720 37.037 0.00 0.00 38.36 1.73
2790 8169 2.749621 GCCTAAAATGTCTGAGGTGGTG 59.250 50.000 0.00 0.00 0.00 4.17
2817 8196 5.646360 AGTATTGGAAGGTACCATGAAAACG 59.354 40.000 15.94 0.00 39.82 3.60
2922 13249 4.406456 CTCTAGCCTCAGATGTATCAGGT 58.594 47.826 0.00 0.00 0.00 4.00
2944 13271 2.816087 CCCAGGTGAAACAGAGACAATG 59.184 50.000 0.00 0.00 39.98 2.82
2946 13273 3.499918 CCAGGTGAAACAGAGACAATGAC 59.500 47.826 0.00 0.00 39.98 3.06
2985 13316 7.777095 AGATTGTGTGTAGGAGATTCTCTTAC 58.223 38.462 22.53 22.53 41.45 2.34
2986 13317 6.911250 TTGTGTGTAGGAGATTCTCTTACA 57.089 37.500 26.16 26.16 45.96 2.41
3068 13402 6.932356 ACTGATGTTAACCTGCAGAATATG 57.068 37.500 17.39 0.00 0.00 1.78
3073 13407 4.635765 TGTTAACCTGCAGAATATGTCAGC 59.364 41.667 17.39 0.00 39.16 4.26
3096 13430 0.310854 GCAAACCTTGTTCGGTCCAG 59.689 55.000 0.00 0.00 35.89 3.86
3198 13556 6.875948 ACAAGTTTTAAAATTCCCATTGCC 57.124 33.333 3.52 0.00 0.00 4.52
3293 13653 3.821033 ACCACAAGTGCCTTTATGTTCTC 59.179 43.478 0.00 0.00 0.00 2.87
3318 13678 4.020307 AGCATTTCCACTGGGTTTTTATGG 60.020 41.667 0.00 0.00 34.93 2.74
3319 13679 4.252878 CATTTCCACTGGGTTTTTATGGC 58.747 43.478 0.00 0.00 34.93 4.40
3320 13680 2.685106 TCCACTGGGTTTTTATGGCA 57.315 45.000 0.00 0.00 34.93 4.92
3321 13681 3.182887 TCCACTGGGTTTTTATGGCAT 57.817 42.857 4.88 4.88 34.93 4.40
3322 13682 3.515562 TCCACTGGGTTTTTATGGCATT 58.484 40.909 4.78 0.00 34.93 3.56
3323 13683 4.678256 TCCACTGGGTTTTTATGGCATTA 58.322 39.130 4.78 0.00 34.93 1.90
3324 13684 4.709397 TCCACTGGGTTTTTATGGCATTAG 59.291 41.667 4.78 0.00 34.93 1.73
3325 13685 4.432712 CACTGGGTTTTTATGGCATTAGC 58.567 43.478 4.78 0.00 41.10 3.09
3389 13751 4.201724 CGCTCAAACCTGTTATAAGCTGTC 60.202 45.833 0.00 0.00 0.00 3.51
3401 13763 6.704493 TGTTATAAGCTGTCACGAGAAAACTT 59.296 34.615 0.00 0.00 0.00 2.66
3407 13769 6.255950 AGCTGTCACGAGAAAACTTTAAAAC 58.744 36.000 0.00 0.00 0.00 2.43
3497 13886 5.005740 CCATTGACTGTGAGAGGATTTTGA 58.994 41.667 0.00 0.00 0.00 2.69
3506 13895 9.739276 ACTGTGAGAGGATTTTGATACATTTTA 57.261 29.630 0.00 0.00 0.00 1.52
3590 13979 1.091771 CCATGCCTACCTCACAAGCG 61.092 60.000 0.00 0.00 0.00 4.68
3622 14011 1.408702 GCTGGTGAGCTTTTTGTGGAA 59.591 47.619 0.00 0.00 42.52 3.53
3637 14026 9.617975 CTTTTTGTGGAAGAGAAGAAATGATAC 57.382 33.333 0.00 0.00 0.00 2.24
3658 14047 2.050144 AGGGAAACAGAGCAAGAGACA 58.950 47.619 0.00 0.00 0.00 3.41
3667 14056 0.539051 AGCAAGAGACAGGGGATTCG 59.461 55.000 0.00 0.00 0.00 3.34
3686 14075 7.244192 GGATTCGGTTTCTGTTCATTTTCTAG 58.756 38.462 0.00 0.00 0.00 2.43
3722 14111 1.831736 TGCTCAGCCCTTAAGTACCTC 59.168 52.381 0.00 0.00 0.00 3.85
3724 14113 2.100989 CTCAGCCCTTAAGTACCTCGT 58.899 52.381 0.97 0.00 0.00 4.18
3735 14124 0.456628 GTACCTCGTCTCCTCTTGCC 59.543 60.000 0.00 0.00 0.00 4.52
3760 14149 4.778143 GCCCACGCACCCCTACAG 62.778 72.222 0.00 0.00 34.03 2.74
3766 14155 1.066143 CACGCACCCCTACAGAATCTT 60.066 52.381 0.00 0.00 0.00 2.40
3771 14160 4.698304 CGCACCCCTACAGAATCTTTAAAA 59.302 41.667 0.00 0.00 0.00 1.52
3783 14172 9.301897 ACAGAATCTTTAAAAAGACATAAGGCT 57.698 29.630 7.29 0.00 46.80 4.58
3827 14216 6.932400 CACTAACAACTTCAGGTTACATGGTA 59.068 38.462 0.00 0.00 36.23 3.25
3834 14223 5.247564 ACTTCAGGTTACATGGTAGCAACTA 59.752 40.000 0.00 0.00 0.00 2.24
3916 14305 7.839680 AATTCCCTTGATTTGTTCAGTAACT 57.160 32.000 0.00 0.00 36.51 2.24
3925 14314 9.549078 TTGATTTGTTCAGTAACTACACACATA 57.451 29.630 0.00 0.00 36.51 2.29
3926 14315 9.719355 TGATTTGTTCAGTAACTACACACATAT 57.281 29.630 0.00 0.00 36.51 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.969628 ACTGAGGTTTCGAGCTATGG 57.030 50.000 0.00 0.00 0.00 2.74
30 31 1.335051 GCCAAAACTGAGGTTTCGAGC 60.335 52.381 0.00 0.00 43.90 5.03
31 32 1.069906 CGCCAAAACTGAGGTTTCGAG 60.070 52.381 0.00 0.00 43.90 4.04
34 35 0.668535 AGCGCCAAAACTGAGGTTTC 59.331 50.000 2.29 0.00 43.90 2.78
43 44 0.936600 ACATTTTGCAGCGCCAAAAC 59.063 45.000 21.55 1.81 44.60 2.43
44 45 2.131183 GTACATTTTGCAGCGCCAAAA 58.869 42.857 21.42 21.42 45.50 2.44
72 73 2.433436 GGAAGGTAATTGTGGCGACTT 58.567 47.619 0.00 0.00 0.00 3.01
73 74 1.674817 CGGAAGGTAATTGTGGCGACT 60.675 52.381 0.00 0.00 0.00 4.18
74 75 0.725117 CGGAAGGTAATTGTGGCGAC 59.275 55.000 0.00 0.00 0.00 5.19
75 76 1.022451 GCGGAAGGTAATTGTGGCGA 61.022 55.000 0.00 0.00 0.00 5.54
76 77 1.024579 AGCGGAAGGTAATTGTGGCG 61.025 55.000 0.00 0.00 41.99 5.69
78 79 3.261981 ACTAGCGGAAGGTAATTGTGG 57.738 47.619 0.00 0.00 44.35 4.17
79 80 4.600012 CAACTAGCGGAAGGTAATTGTG 57.400 45.455 0.00 0.00 43.71 3.33
89 90 2.299013 ACATCTGTGTCAACTAGCGGAA 59.701 45.455 0.00 0.00 31.41 4.30
102 103 3.627123 TGTGTTCTTTGTGGACATCTGTG 59.373 43.478 0.00 0.00 0.00 3.66
111 112 3.733684 CGGAAACCTTGTGTTCTTTGTGG 60.734 47.826 0.00 0.00 35.67 4.17
147 148 1.166531 AACGCTGTCAGGTTTGCTCC 61.167 55.000 1.14 0.00 0.00 4.70
163 164 4.625742 CCTTGTCTCACTAACCACATAACG 59.374 45.833 0.00 0.00 0.00 3.18
167 168 2.639839 AGCCTTGTCTCACTAACCACAT 59.360 45.455 0.00 0.00 0.00 3.21
199 200 2.109126 GCCTCGTTGACTGGCCATC 61.109 63.158 5.51 7.08 40.71 3.51
200 201 2.045926 GCCTCGTTGACTGGCCAT 60.046 61.111 5.51 0.00 40.71 4.40
201 202 2.803155 GATGCCTCGTTGACTGGCCA 62.803 60.000 4.71 4.71 45.56 5.36
202 203 2.045926 ATGCCTCGTTGACTGGCC 60.046 61.111 0.00 0.00 45.56 5.36
206 208 1.078848 GCTGGATGCCTCGTTGACT 60.079 57.895 0.00 0.00 35.15 3.41
257 259 1.676967 GGGGTCAAGCTGAAGGCAG 60.677 63.158 0.00 0.00 44.79 4.85
258 260 2.005606 TTGGGGTCAAGCTGAAGGCA 62.006 55.000 0.00 0.00 44.79 4.75
259 261 1.228552 TTGGGGTCAAGCTGAAGGC 60.229 57.895 0.00 0.00 42.19 4.35
260 262 0.895559 GGTTGGGGTCAAGCTGAAGG 60.896 60.000 0.00 0.00 45.10 3.46
267 269 1.903404 GCTGGTGGTTGGGGTCAAG 60.903 63.158 0.00 0.00 32.92 3.02
268 270 1.063070 TAGCTGGTGGTTGGGGTCAA 61.063 55.000 0.00 0.00 0.00 3.18
269 271 1.462432 TAGCTGGTGGTTGGGGTCA 60.462 57.895 0.00 0.00 0.00 4.02
270 272 1.002502 GTAGCTGGTGGTTGGGGTC 60.003 63.158 0.00 0.00 0.00 4.46
271 273 1.065997 AAGTAGCTGGTGGTTGGGGT 61.066 55.000 0.00 0.00 0.00 4.95
272 274 0.322546 GAAGTAGCTGGTGGTTGGGG 60.323 60.000 0.00 0.00 0.00 4.96
273 275 0.693049 AGAAGTAGCTGGTGGTTGGG 59.307 55.000 0.00 0.00 0.00 4.12
274 276 2.154462 CAAGAAGTAGCTGGTGGTTGG 58.846 52.381 0.00 0.00 0.00 3.77
278 280 1.896220 TTGCAAGAAGTAGCTGGTGG 58.104 50.000 0.00 0.00 0.00 4.61
281 283 3.141398 TCACTTTGCAAGAAGTAGCTGG 58.859 45.455 3.51 0.00 37.76 4.85
285 287 5.931146 AGAGTGATCACTTTGCAAGAAGTAG 59.069 40.000 28.46 0.00 42.66 2.57
291 293 3.562505 GCAAGAGTGATCACTTTGCAAG 58.437 45.455 37.45 24.77 44.74 4.01
312 317 1.333619 CTTTGTTGTGACAGGAACGGG 59.666 52.381 0.00 0.00 37.04 5.28
318 323 1.955778 TCCATGCTTTGTTGTGACAGG 59.044 47.619 0.00 0.00 37.04 4.00
324 329 3.159213 TCCTGATCCATGCTTTGTTGT 57.841 42.857 0.00 0.00 0.00 3.32
339 344 1.420138 ACGCCTTTTCTTCCTTCCTGA 59.580 47.619 0.00 0.00 0.00 3.86
341 346 1.897560 CACGCCTTTTCTTCCTTCCT 58.102 50.000 0.00 0.00 0.00 3.36
354 364 2.441164 TTGTTGGGTTGCACGCCT 60.441 55.556 6.47 0.00 0.00 5.52
355 365 2.027460 CTTGTTGGGTTGCACGCC 59.973 61.111 0.00 0.00 0.00 5.68
356 366 0.459411 AAACTTGTTGGGTTGCACGC 60.459 50.000 0.00 0.00 0.00 5.34
432 448 2.503356 ACCATCAGAGAGTAGGCTTTGG 59.497 50.000 0.00 0.00 0.00 3.28
468 485 6.867550 TGTTTCCACATGAATAAAACACACA 58.132 32.000 0.00 0.00 35.54 3.72
487 505 4.563061 ACGGAGTGTTACATAGGTGTTTC 58.437 43.478 0.00 0.00 42.51 2.78
491 509 7.605410 AAAATTACGGAGTGTTACATAGGTG 57.395 36.000 0.00 0.00 45.73 4.00
557 575 7.844779 TGGGATGGAGGGAGTAATATATAAGAC 59.155 40.741 0.00 0.00 0.00 3.01
558 576 7.961940 TGGGATGGAGGGAGTAATATATAAGA 58.038 38.462 0.00 0.00 0.00 2.10
563 581 8.135586 ACATTATGGGATGGAGGGAGTAATATA 58.864 37.037 0.00 0.00 0.00 0.86
564 582 6.974247 ACATTATGGGATGGAGGGAGTAATAT 59.026 38.462 0.00 0.00 0.00 1.28
565 583 6.339220 ACATTATGGGATGGAGGGAGTAATA 58.661 40.000 0.00 0.00 0.00 0.98
567 585 4.577096 ACATTATGGGATGGAGGGAGTAA 58.423 43.478 0.00 0.00 0.00 2.24
570 588 5.582950 TTTACATTATGGGATGGAGGGAG 57.417 43.478 0.00 0.00 0.00 4.30
572 590 5.454062 TGTTTTACATTATGGGATGGAGGG 58.546 41.667 0.00 0.00 0.00 4.30
620 714 9.243105 ACACTAGCCATATTGTAAGACATTTTT 57.757 29.630 0.00 0.00 0.00 1.94
621 715 8.807948 ACACTAGCCATATTGTAAGACATTTT 57.192 30.769 0.00 0.00 0.00 1.82
622 716 8.046708 TGACACTAGCCATATTGTAAGACATTT 58.953 33.333 0.00 0.00 0.00 2.32
623 717 7.564793 TGACACTAGCCATATTGTAAGACATT 58.435 34.615 0.00 0.00 0.00 2.71
624 718 7.124573 TGACACTAGCCATATTGTAAGACAT 57.875 36.000 0.00 0.00 0.00 3.06
625 719 6.538945 TGACACTAGCCATATTGTAAGACA 57.461 37.500 0.00 0.00 0.00 3.41
626 720 7.843490 TTTGACACTAGCCATATTGTAAGAC 57.157 36.000 0.00 0.00 0.00 3.01
627 721 8.856153 TTTTTGACACTAGCCATATTGTAAGA 57.144 30.769 0.00 0.00 0.00 2.10
653 747 3.879295 CTCCGTTCCATAATGCAAGACAT 59.121 43.478 0.00 0.00 42.30 3.06
654 748 3.055458 TCTCCGTTCCATAATGCAAGACA 60.055 43.478 0.00 0.00 0.00 3.41
655 749 3.531538 TCTCCGTTCCATAATGCAAGAC 58.468 45.455 0.00 0.00 0.00 3.01
656 750 3.450817 TCTCTCCGTTCCATAATGCAAGA 59.549 43.478 0.00 0.00 0.00 3.02
657 751 3.797039 TCTCTCCGTTCCATAATGCAAG 58.203 45.455 0.00 0.00 0.00 4.01
658 752 3.904800 TCTCTCCGTTCCATAATGCAA 57.095 42.857 0.00 0.00 0.00 4.08
659 753 3.904800 TTCTCTCCGTTCCATAATGCA 57.095 42.857 0.00 0.00 0.00 3.96
660 754 5.542779 AGTATTCTCTCCGTTCCATAATGC 58.457 41.667 0.00 0.00 0.00 3.56
661 755 8.361139 ACTTAGTATTCTCTCCGTTCCATAATG 58.639 37.037 0.00 0.00 0.00 1.90
662 756 8.480133 ACTTAGTATTCTCTCCGTTCCATAAT 57.520 34.615 0.00 0.00 0.00 1.28
663 757 7.893124 ACTTAGTATTCTCTCCGTTCCATAA 57.107 36.000 0.00 0.00 0.00 1.90
664 758 7.893124 AACTTAGTATTCTCTCCGTTCCATA 57.107 36.000 0.00 0.00 0.00 2.74
665 759 6.793505 AACTTAGTATTCTCTCCGTTCCAT 57.206 37.500 0.00 0.00 0.00 3.41
666 760 7.707624 TTAACTTAGTATTCTCTCCGTTCCA 57.292 36.000 0.00 0.00 0.00 3.53
667 761 8.992835 TTTTAACTTAGTATTCTCTCCGTTCC 57.007 34.615 0.00 0.00 0.00 3.62
668 762 9.085250 CCTTTTAACTTAGTATTCTCTCCGTTC 57.915 37.037 0.00 0.00 0.00 3.95
669 763 8.591940 ACCTTTTAACTTAGTATTCTCTCCGTT 58.408 33.333 0.00 0.00 0.00 4.44
670 764 8.131847 ACCTTTTAACTTAGTATTCTCTCCGT 57.868 34.615 0.00 0.00 0.00 4.69
671 765 9.733219 CTACCTTTTAACTTAGTATTCTCTCCG 57.267 37.037 0.00 0.00 0.00 4.63
684 778 9.740710 ATCTGAGCAAATACTACCTTTTAACTT 57.259 29.630 0.00 0.00 0.00 2.66
685 779 9.740710 AATCTGAGCAAATACTACCTTTTAACT 57.259 29.630 0.00 0.00 0.00 2.24
688 782 8.956426 CCAAATCTGAGCAAATACTACCTTTTA 58.044 33.333 0.00 0.00 0.00 1.52
689 783 7.577616 GCCAAATCTGAGCAAATACTACCTTTT 60.578 37.037 0.00 0.00 0.00 2.27
690 784 6.127619 GCCAAATCTGAGCAAATACTACCTTT 60.128 38.462 0.00 0.00 0.00 3.11
691 785 5.358160 GCCAAATCTGAGCAAATACTACCTT 59.642 40.000 0.00 0.00 0.00 3.50
755 890 2.656560 ATATATCTGCGCGTCTTCCC 57.343 50.000 8.43 0.00 0.00 3.97
756 891 7.751047 TTATTTATATATCTGCGCGTCTTCC 57.249 36.000 8.43 0.00 0.00 3.46
759 894 8.116753 GCAAATTATTTATATATCTGCGCGTCT 58.883 33.333 8.43 0.00 0.00 4.18
760 895 7.902917 TGCAAATTATTTATATATCTGCGCGTC 59.097 33.333 8.43 0.00 0.00 5.19
762 897 8.599876 TTGCAAATTATTTATATATCTGCGCG 57.400 30.769 0.00 0.00 0.00 6.86
774 910 8.555361 GGAACTTGTTTGCTTGCAAATTATTTA 58.445 29.630 21.25 0.00 0.00 1.40
775 911 7.066766 TGGAACTTGTTTGCTTGCAAATTATTT 59.933 29.630 21.25 13.36 0.00 1.40
776 912 6.541641 TGGAACTTGTTTGCTTGCAAATTATT 59.458 30.769 21.25 13.98 0.00 1.40
804 943 4.689612 TGATAATAGGACCAGGCTTGAC 57.310 45.455 0.00 0.00 0.00 3.18
821 960 3.195610 AGCGACATGAGACCTGTTTGATA 59.804 43.478 0.00 0.00 0.00 2.15
823 962 1.344438 AGCGACATGAGACCTGTTTGA 59.656 47.619 0.00 0.00 0.00 2.69
826 965 0.681733 ACAGCGACATGAGACCTGTT 59.318 50.000 0.00 0.00 33.29 3.16
831 970 3.254060 ACATACAACAGCGACATGAGAC 58.746 45.455 0.00 0.00 0.00 3.36
1558 6811 1.078426 AGTTATTTGCCGCGCTCCT 60.078 52.632 5.56 0.00 0.00 3.69
1572 6825 1.301401 GTCCGTGGTGCTGCAGTTA 60.301 57.895 16.64 1.73 0.00 2.24
1897 7276 2.244486 TCCTCTTCCTGCATCTCACT 57.756 50.000 0.00 0.00 0.00 3.41
1906 7285 3.440127 ACTCTTCCTCTTCCTCTTCCTG 58.560 50.000 0.00 0.00 0.00 3.86
1978 7357 1.911293 GCGAATTGCTCCGTTGCTGA 61.911 55.000 0.00 0.00 41.73 4.26
1986 7365 0.179179 GCTTGTCTGCGAATTGCTCC 60.179 55.000 0.00 0.00 46.63 4.70
2094 7473 5.313712 ACCTCTGCCGAAAATTCTCTTTTA 58.686 37.500 0.00 0.00 0.00 1.52
2118 7497 1.546923 TGAATGCTGCCAATTGTCTGG 59.453 47.619 4.43 0.00 39.71 3.86
2304 7683 5.660533 AGATAAGAGAGGCCCTTAGCTATT 58.339 41.667 14.15 4.76 39.99 1.73
2397 7776 9.044150 CCAAAATCAGAAAGTTTAGCATTGAAA 57.956 29.630 0.00 0.00 0.00 2.69
2425 7804 3.711190 TCCCTGTCTATGAGCTTGCATAA 59.289 43.478 0.00 0.00 30.90 1.90
2493 7872 2.019984 GATGTCAACCATTCAGGAGCC 58.980 52.381 0.00 0.00 41.22 4.70
2517 7896 5.808366 AGATATCTGCCTTTTCCGTGATA 57.192 39.130 3.89 0.00 0.00 2.15
2681 8060 2.084681 GCTTGCATGTCGTTGCTGC 61.085 57.895 1.14 0.00 43.18 5.25
2790 8169 7.696992 TTTCATGGTACCTTCCAATACTTTC 57.303 36.000 14.36 0.00 41.09 2.62
2817 8196 7.390718 ACAAAGTTATGTTCTATGTTGAGGTCC 59.609 37.037 0.00 0.00 0.00 4.46
2922 13249 1.801242 TGTCTCTGTTTCACCTGGGA 58.199 50.000 0.00 0.00 0.00 4.37
2944 13271 5.648092 ACACAATCTAATTGGCTACCTTGTC 59.352 40.000 4.82 0.00 44.42 3.18
2946 13273 5.415701 ACACACAATCTAATTGGCTACCTTG 59.584 40.000 4.82 0.00 44.42 3.61
2985 13316 4.053295 CAGACCATGGCTTTTGTTTTCTG 58.947 43.478 13.04 10.14 0.00 3.02
2986 13317 3.706086 ACAGACCATGGCTTTTGTTTTCT 59.294 39.130 13.04 0.14 0.00 2.52
3068 13402 2.514205 ACAAGGTTTGCAATGCTGAC 57.486 45.000 6.82 4.91 0.00 3.51
3073 13407 2.393764 GACCGAACAAGGTTTGCAATG 58.606 47.619 0.00 0.00 46.09 2.82
3096 13430 9.495754 CGAAGGAATAAAAATGAGTTCATCTTC 57.504 33.333 0.00 1.64 35.10 2.87
3198 13556 7.260603 CCAATTTACTTCTCTGCTTTATTGGG 58.739 38.462 0.00 0.00 37.11 4.12
3325 13685 3.128068 GGAAAACAAGCCGTACCTAATGG 59.872 47.826 0.00 0.00 37.31 3.16
3389 13751 9.370126 CATGTAGAGTTTTAAAGTTTTCTCGTG 57.630 33.333 0.00 0.00 0.00 4.35
3443 13832 8.632906 AGAACAAAGAAACATCTCATCAATCT 57.367 30.769 0.00 0.00 0.00 2.40
3573 13962 0.833287 ATCGCTTGTGAGGTAGGCAT 59.167 50.000 0.00 0.00 0.00 4.40
3590 13979 0.462581 TCACCAGCGGCAATCTCATC 60.463 55.000 1.45 0.00 0.00 2.92
3622 14011 7.020827 TGTTTCCCTGTATCATTTCTTCTCT 57.979 36.000 0.00 0.00 0.00 3.10
3637 14026 2.224378 TGTCTCTTGCTCTGTTTCCCTG 60.224 50.000 0.00 0.00 0.00 4.45
3658 14047 1.702957 TGAACAGAAACCGAATCCCCT 59.297 47.619 0.00 0.00 0.00 4.79
3667 14056 7.931275 AGTCAACTAGAAAATGAACAGAAACC 58.069 34.615 0.00 0.00 0.00 3.27
3686 14075 4.033817 GCTGAGCATCTGTAATGAGTCAAC 59.966 45.833 0.00 0.00 36.33 3.18
3700 14089 2.436173 AGGTACTTAAGGGCTGAGCATC 59.564 50.000 6.82 0.00 27.25 3.91
3722 14111 1.139095 GTACCGGCAAGAGGAGACG 59.861 63.158 0.00 0.00 0.00 4.18
3724 14113 0.895530 CTTGTACCGGCAAGAGGAGA 59.104 55.000 14.66 0.00 46.34 3.71
3735 14124 3.419759 GTGCGTGGGCTTGTACCG 61.420 66.667 0.00 0.00 40.82 4.02
3760 14149 9.561270 GTGAGCCTTATGTCTTTTTAAAGATTC 57.439 33.333 8.07 0.00 45.83 2.52
3766 14155 6.544197 TGTGTGTGAGCCTTATGTCTTTTTAA 59.456 34.615 0.00 0.00 0.00 1.52
3771 14160 3.071602 ACTGTGTGTGAGCCTTATGTCTT 59.928 43.478 0.00 0.00 0.00 3.01
3810 14199 4.041691 AGTTGCTACCATGTAACCTGAAGT 59.958 41.667 0.00 0.00 33.95 3.01
3811 14200 4.579869 AGTTGCTACCATGTAACCTGAAG 58.420 43.478 0.00 0.00 33.95 3.02
3827 14216 1.838077 GTCATACCCCAGGTAGTTGCT 59.162 52.381 0.00 0.00 41.83 3.91
3834 14223 1.078823 TCTGAGTGTCATACCCCAGGT 59.921 52.381 0.00 0.00 40.16 4.00
3900 14289 9.719355 ATATGTGTGTAGTTACTGAACAAATCA 57.281 29.630 7.80 2.46 38.10 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.