Multiple sequence alignment - TraesCS3D01G062700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G062700 chr3D 100.000 4918 0 0 1 4918 27662416 27667333 0.000000e+00 9082.0
1 TraesCS3D01G062700 chr3D 98.806 1005 7 2 2558 3558 45493321 45492318 0.000000e+00 1784.0
2 TraesCS3D01G062700 chr3D 83.770 1411 166 29 577 1941 28218132 28216739 0.000000e+00 1279.0
3 TraesCS3D01G062700 chr3D 83.877 1011 133 23 944 1941 28224566 28223573 0.000000e+00 937.0
4 TraesCS3D01G062700 chr3D 78.169 1420 220 46 771 2150 28124426 28123057 0.000000e+00 822.0
5 TraesCS3D01G062700 chr3D 89.869 612 51 6 3557 4163 28223049 28222444 0.000000e+00 776.0
6 TraesCS3D01G062700 chr3D 88.871 611 54 9 3557 4163 28216231 28215631 0.000000e+00 739.0
7 TraesCS3D01G062700 chr3D 77.091 1327 210 68 3560 4838 28277030 28278310 0.000000e+00 680.0
8 TraesCS3D01G062700 chr3D 85.176 425 47 12 4436 4857 28215512 28215101 5.890000e-114 422.0
9 TraesCS3D01G062700 chr3D 94.884 215 1 1 2354 2558 45493569 45493355 1.320000e-85 327.0
10 TraesCS3D01G062700 chr3D 88.136 177 14 2 1 170 28125494 28125318 2.320000e-48 204.0
11 TraesCS3D01G062700 chr3D 89.172 157 13 4 4436 4590 28222323 28222169 5.020000e-45 193.0
12 TraesCS3D01G062700 chr3D 97.059 34 1 0 2318 2351 45493631 45493598 1.910000e-04 58.4
13 TraesCS3D01G062700 chr7D 98.900 1000 4 2 2558 3557 66826979 66827971 0.000000e+00 1779.0
14 TraesCS3D01G062700 chr7D 97.598 999 14 3 2558 3556 551745240 551744252 0.000000e+00 1703.0
15 TraesCS3D01G062700 chr7D 94.884 215 1 1 2354 2558 66826731 66826945 1.320000e-85 327.0
16 TraesCS3D01G062700 chr7D 94.393 214 1 2 2356 2558 551745487 551745274 7.940000e-83 318.0
17 TraesCS3D01G062700 chr7D 93.182 44 2 1 2313 2356 66826665 66826707 4.110000e-06 63.9
18 TraesCS3D01G062700 chr7B 98.601 1001 12 2 2558 3558 92906227 92905229 0.000000e+00 1770.0
19 TraesCS3D01G062700 chr7B 94.419 215 2 1 2354 2558 92906475 92906261 6.140000e-84 322.0
20 TraesCS3D01G062700 chr7B 93.488 215 3 4 2354 2558 179913406 179913619 4.780000e-80 309.0
21 TraesCS3D01G062700 chr7B 95.122 41 2 0 2316 2356 92906539 92906499 1.140000e-06 65.8
22 TraesCS3D01G062700 chr7B 94.872 39 2 0 2318 2356 179913344 179913382 1.480000e-05 62.1
23 TraesCS3D01G062700 chr6A 98.500 1000 14 1 2558 3557 39499179 39500177 0.000000e+00 1762.0
24 TraesCS3D01G062700 chr6A 86.792 53 5 2 2306 2356 39498855 39498907 1.910000e-04 58.4
25 TraesCS3D01G062700 chr3A 98.398 999 15 1 2558 3556 38332446 38331449 0.000000e+00 1755.0
26 TraesCS3D01G062700 chr3A 84.602 1786 202 34 577 2317 38136802 38135045 0.000000e+00 1707.0
27 TraesCS3D01G062700 chr3A 81.896 1287 122 54 3631 4857 38134957 38133722 0.000000e+00 983.0
28 TraesCS3D01G062700 chr3A 78.637 1423 213 48 771 2151 38013531 38012158 0.000000e+00 859.0
29 TraesCS3D01G062700 chr3A 76.821 1428 233 60 771 2151 37800176 37801552 0.000000e+00 713.0
30 TraesCS3D01G062700 chr3A 83.553 608 97 2 1236 1843 38160006 38159402 2.570000e-157 566.0
31 TraesCS3D01G062700 chr3A 85.177 452 52 9 668 1104 38160465 38160014 2.700000e-122 449.0
32 TraesCS3D01G062700 chr3A 87.989 358 36 3 3781 4137 38142516 38142165 2.740000e-112 416.0
33 TraesCS3D01G062700 chr3A 83.467 375 47 9 4488 4857 38142162 38141798 7.890000e-88 335.0
34 TraesCS3D01G062700 chr3A 94.419 215 2 1 2354 2558 38332694 38332480 6.140000e-84 322.0
35 TraesCS3D01G062700 chr3A 76.944 360 52 21 3739 4087 10967058 10967397 5.060000e-40 176.0
36 TraesCS3D01G062700 chr3A 94.872 39 2 0 2318 2356 38332756 38332718 1.480000e-05 62.1
37 TraesCS3D01G062700 chr6B 98.577 984 11 2 2573 3556 368480353 368481333 0.000000e+00 1736.0
38 TraesCS3D01G062700 chr5B 97.602 1001 23 1 2558 3558 669296739 669295740 0.000000e+00 1714.0
39 TraesCS3D01G062700 chr5B 93.953 215 3 1 2354 2558 669296987 669296773 2.860000e-82 316.0
40 TraesCS3D01G062700 chr1B 97.384 994 21 3 2558 3551 132063537 132064525 0.000000e+00 1687.0
41 TraesCS3D01G062700 chr1B 81.146 1448 205 45 582 1981 510790648 510792075 0.000000e+00 1099.0
42 TraesCS3D01G062700 chr1B 97.030 202 6 0 2357 2558 132063302 132063503 1.700000e-89 340.0
43 TraesCS3D01G062700 chr3B 84.335 1781 213 31 577 2317 47211287 47209533 0.000000e+00 1683.0
44 TraesCS3D01G062700 chr3B 84.037 1303 165 29 665 1941 47223017 47221732 0.000000e+00 1214.0
45 TraesCS3D01G062700 chr3B 82.939 1354 133 45 3557 4857 47209540 47208232 0.000000e+00 1131.0
46 TraesCS3D01G062700 chr3B 79.081 1219 184 43 612 1773 46254332 46255536 0.000000e+00 773.0
47 TraesCS3D01G062700 chr3B 89.508 610 52 7 3559 4163 47221201 47220599 0.000000e+00 761.0
48 TraesCS3D01G062700 chr3B 76.667 1350 203 82 3551 4846 47271669 47272960 0.000000e+00 645.0
49 TraesCS3D01G062700 chr3B 85.100 349 38 8 4485 4828 47220348 47220009 1.310000e-90 344.0
50 TraesCS3D01G062700 chr3B 95.480 177 8 0 1 177 46779061 46779237 2.900000e-72 283.0
51 TraesCS3D01G062700 chr1D 83.098 1769 227 35 582 2317 456280637 456278908 0.000000e+00 1544.0
52 TraesCS3D01G062700 chr1D 83.580 1352 154 42 3557 4857 456278915 456277581 0.000000e+00 1205.0
53 TraesCS3D01G062700 chr1A 79.461 1446 207 58 582 1981 481627883 481629284 0.000000e+00 942.0
54 TraesCS3D01G062700 chr2B 77.918 951 175 24 1219 2150 787786733 787787667 1.200000e-155 560.0
55 TraesCS3D01G062700 chr5D 99.512 205 1 0 2354 2558 299422851 299422647 1.670000e-99 374.0
56 TraesCS3D01G062700 chr5D 97.059 34 1 0 2318 2351 299422913 299422880 1.910000e-04 58.4
57 TraesCS3D01G062700 chr6D 93.659 205 13 0 2354 2558 186782340 186782544 1.720000e-79 307.0
58 TraesCS3D01G062700 chr2D 74.718 621 95 33 3568 4176 650599141 650599711 2.300000e-53 220.0
59 TraesCS3D01G062700 chrUn 83.838 198 25 5 3941 4136 240816152 240816344 1.090000e-41 182.0
60 TraesCS3D01G062700 chrUn 75.817 153 21 13 3628 3770 35290422 35290276 4.110000e-06 63.9
61 TraesCS3D01G062700 chrUn 94.872 39 2 0 2318 2356 296241787 296241825 1.480000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G062700 chr3D 27662416 27667333 4917 False 9082.000000 9082 100.000000 1 4918 1 chr3D.!!$F1 4917
1 TraesCS3D01G062700 chr3D 28215101 28218132 3031 True 813.333333 1279 85.939000 577 4857 3 chr3D.!!$R2 4280
2 TraesCS3D01G062700 chr3D 45492318 45493631 1313 True 723.133333 1784 96.916333 2318 3558 3 chr3D.!!$R4 1240
3 TraesCS3D01G062700 chr3D 28277030 28278310 1280 False 680.000000 680 77.091000 3560 4838 1 chr3D.!!$F2 1278
4 TraesCS3D01G062700 chr3D 28222169 28224566 2397 True 635.333333 937 87.639333 944 4590 3 chr3D.!!$R3 3646
5 TraesCS3D01G062700 chr3D 28123057 28125494 2437 True 513.000000 822 83.152500 1 2150 2 chr3D.!!$R1 2149
6 TraesCS3D01G062700 chr7D 551744252 551745487 1235 True 1010.500000 1703 95.995500 2356 3556 2 chr7D.!!$R1 1200
7 TraesCS3D01G062700 chr7D 66826665 66827971 1306 False 723.300000 1779 95.655333 2313 3557 3 chr7D.!!$F1 1244
8 TraesCS3D01G062700 chr7B 92905229 92906539 1310 True 719.266667 1770 96.047333 2316 3558 3 chr7B.!!$R1 1242
9 TraesCS3D01G062700 chr6A 39498855 39500177 1322 False 910.200000 1762 92.646000 2306 3557 2 chr6A.!!$F1 1251
10 TraesCS3D01G062700 chr3A 38133722 38136802 3080 True 1345.000000 1707 83.249000 577 4857 2 chr3A.!!$R2 4280
11 TraesCS3D01G062700 chr3A 38012158 38013531 1373 True 859.000000 859 78.637000 771 2151 1 chr3A.!!$R1 1380
12 TraesCS3D01G062700 chr3A 38331449 38332756 1307 True 713.033333 1755 95.896333 2318 3556 3 chr3A.!!$R5 1238
13 TraesCS3D01G062700 chr3A 37800176 37801552 1376 False 713.000000 713 76.821000 771 2151 1 chr3A.!!$F2 1380
14 TraesCS3D01G062700 chr3A 38159402 38160465 1063 True 507.500000 566 84.365000 668 1843 2 chr3A.!!$R4 1175
15 TraesCS3D01G062700 chr3A 38141798 38142516 718 True 375.500000 416 85.728000 3781 4857 2 chr3A.!!$R3 1076
16 TraesCS3D01G062700 chr6B 368480353 368481333 980 False 1736.000000 1736 98.577000 2573 3556 1 chr6B.!!$F1 983
17 TraesCS3D01G062700 chr5B 669295740 669296987 1247 True 1015.000000 1714 95.777500 2354 3558 2 chr5B.!!$R1 1204
18 TraesCS3D01G062700 chr1B 510790648 510792075 1427 False 1099.000000 1099 81.146000 582 1981 1 chr1B.!!$F1 1399
19 TraesCS3D01G062700 chr1B 132063302 132064525 1223 False 1013.500000 1687 97.207000 2357 3551 2 chr1B.!!$F2 1194
20 TraesCS3D01G062700 chr3B 47208232 47211287 3055 True 1407.000000 1683 83.637000 577 4857 2 chr3B.!!$R1 4280
21 TraesCS3D01G062700 chr3B 46254332 46255536 1204 False 773.000000 773 79.081000 612 1773 1 chr3B.!!$F1 1161
22 TraesCS3D01G062700 chr3B 47220009 47223017 3008 True 773.000000 1214 86.215000 665 4828 3 chr3B.!!$R2 4163
23 TraesCS3D01G062700 chr3B 47271669 47272960 1291 False 645.000000 645 76.667000 3551 4846 1 chr3B.!!$F3 1295
24 TraesCS3D01G062700 chr1D 456277581 456280637 3056 True 1374.500000 1544 83.339000 582 4857 2 chr1D.!!$R1 4275
25 TraesCS3D01G062700 chr1A 481627883 481629284 1401 False 942.000000 942 79.461000 582 1981 1 chr1A.!!$F1 1399
26 TraesCS3D01G062700 chr2B 787786733 787787667 934 False 560.000000 560 77.918000 1219 2150 1 chr2B.!!$F1 931
27 TraesCS3D01G062700 chr2D 650599141 650599711 570 False 220.000000 220 74.718000 3568 4176 1 chr2D.!!$F1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
270 407 0.032403 TCCATGGTTCGAAACGACGT 59.968 50.0 12.58 0.00 34.89 4.34 F
552 884 0.604578 GAGTGCTACAACCACGGGTA 59.395 55.0 0.00 0.00 38.22 3.69 F
1141 1576 0.179111 GCCGAATGAGGTCATCGTGA 60.179 55.0 0.00 0.00 35.10 4.35 F
1526 1969 0.036294 GGGCCTCCCGTTATAGATGC 60.036 60.0 0.84 0.00 32.13 3.91 F
1787 2230 0.179045 ATTCTATCTGTGGGCCGTGC 60.179 55.0 0.00 0.00 0.00 5.34 F
2351 3234 0.388134 GTCTGTGAAGCGTCGCCTAA 60.388 55.0 14.86 0.00 32.98 2.69 F
3296 4261 0.889186 AAAGGCGCCGTTCTGTCATT 60.889 50.0 22.52 3.62 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1108 1537 0.038435 TTCGGCCGATTGTACGTGAA 60.038 50.000 31.56 6.73 0.00 3.18 R
1446 1887 1.273606 AGCATGCCGTCGCTTATAGAT 59.726 47.619 15.66 0.00 33.81 1.98 R
2358 3267 2.665185 GCAGGTTCGACGCCTTGT 60.665 61.111 5.07 0.00 33.31 3.16 R
3143 4108 1.357137 TCTGCATCACTACAACCCCA 58.643 50.000 0.00 0.00 0.00 4.96 R
3579 4554 1.909986 AGAAAGGAAGACAGGGCCTAC 59.090 52.381 5.28 3.38 0.00 3.18 R
3844 4860 0.968901 ACCAGCAATGGATGTGCCTG 60.969 55.000 0.31 0.00 43.27 4.85 R
4517 5724 0.039326 ATCTGCAGCAGCCCTTCTTT 59.961 50.000 18.43 0.00 41.13 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 7.875327 TTTGAGCTTCCCCAAGTAATATTAC 57.125 36.000 16.44 16.44 31.45 1.89
57 58 5.967674 CAGGTTTGATTTTCATCGCATACTC 59.032 40.000 0.00 0.00 31.08 2.59
93 94 1.682257 GCTTCTTCAGCCAGGAGGT 59.318 57.895 0.00 0.00 43.65 3.85
96 97 2.092699 GCTTCTTCAGCCAGGAGGTTAT 60.093 50.000 0.00 0.00 43.65 1.89
108 109 5.067805 GCCAGGAGGTTATATTTTGAACTGG 59.932 44.000 0.00 0.00 43.39 4.00
112 113 9.627123 CAGGAGGTTATATTTTGAACTGGATTA 57.373 33.333 0.00 0.00 0.00 1.75
130 131 7.013655 ACTGGATTACTGATTGCATTTACCATC 59.986 37.037 0.00 0.00 0.00 3.51
132 133 7.506599 TGGATTACTGATTGCATTTACCATCAT 59.493 33.333 0.00 0.00 0.00 2.45
157 165 9.956640 ATAAAATAATGCAATCCTGGTTCAAAA 57.043 25.926 0.00 0.00 0.00 2.44
164 172 4.618227 GCAATCCTGGTTCAAAATAACGCT 60.618 41.667 0.00 0.00 0.00 5.07
167 175 4.000988 TCCTGGTTCAAAATAACGCTCTC 58.999 43.478 0.00 0.00 0.00 3.20
170 178 5.390991 CCTGGTTCAAAATAACGCTCTCTTC 60.391 44.000 0.00 0.00 0.00 2.87
171 179 5.060506 TGGTTCAAAATAACGCTCTCTTCA 58.939 37.500 0.00 0.00 0.00 3.02
172 180 5.179368 TGGTTCAAAATAACGCTCTCTTCAG 59.821 40.000 0.00 0.00 0.00 3.02
173 181 5.408604 GGTTCAAAATAACGCTCTCTTCAGA 59.591 40.000 0.00 0.00 0.00 3.27
187 195 5.681337 CTCTTCAGAGAAAAACTGTTCCC 57.319 43.478 0.00 0.00 44.74 3.97
189 197 2.846193 TCAGAGAAAAACTGTTCCCGG 58.154 47.619 0.00 0.00 36.81 5.73
190 198 1.880027 CAGAGAAAAACTGTTCCCGGG 59.120 52.381 16.85 16.85 0.00 5.73
195 332 1.919240 AAAACTGTTCCCGGGGAATC 58.081 50.000 30.20 22.39 44.04 2.52
205 342 1.032114 CCGGGGAATCTGGCTGAAAC 61.032 60.000 0.00 0.00 34.67 2.78
222 359 2.962569 CGAGACACGGAGGAGCAA 59.037 61.111 0.00 0.00 38.46 3.91
252 389 5.239525 AGCTTGCGGATTCCTAAATTATGTC 59.760 40.000 0.30 0.00 0.00 3.06
253 390 5.562890 GCTTGCGGATTCCTAAATTATGTCC 60.563 44.000 0.30 0.00 0.00 4.02
255 392 5.630121 TGCGGATTCCTAAATTATGTCCAT 58.370 37.500 0.30 0.00 0.00 3.41
257 394 5.106157 GCGGATTCCTAAATTATGTCCATGG 60.106 44.000 4.97 4.97 0.00 3.66
260 397 7.308589 CGGATTCCTAAATTATGTCCATGGTTC 60.309 40.741 12.58 7.17 0.00 3.62
263 400 6.654959 TCCTAAATTATGTCCATGGTTCGAA 58.345 36.000 12.58 0.00 0.00 3.71
265 402 7.066525 TCCTAAATTATGTCCATGGTTCGAAAC 59.933 37.037 12.58 6.16 0.00 2.78
266 403 4.875544 ATTATGTCCATGGTTCGAAACG 57.124 40.909 12.58 0.00 0.00 3.60
267 404 2.465860 ATGTCCATGGTTCGAAACGA 57.534 45.000 12.58 0.00 0.00 3.85
268 405 1.504359 TGTCCATGGTTCGAAACGAC 58.496 50.000 12.58 10.43 34.89 4.34
269 406 0.437295 GTCCATGGTTCGAAACGACG 59.563 55.000 12.58 0.00 34.89 5.12
270 407 0.032403 TCCATGGTTCGAAACGACGT 59.968 50.000 12.58 0.00 34.89 4.34
271 408 0.863144 CCATGGTTCGAAACGACGTT 59.137 50.000 7.57 7.57 34.89 3.99
272 409 1.136446 CCATGGTTCGAAACGACGTTC 60.136 52.381 14.58 6.87 34.89 3.95
281 418 3.557908 GAAACGACGTTCGAAAAGTGA 57.442 42.857 14.58 0.00 43.74 3.41
282 419 2.984879 AACGACGTTCGAAAAGTGAC 57.015 45.000 7.57 0.00 43.74 3.67
284 421 1.585214 ACGACGTTCGAAAAGTGACAC 59.415 47.619 11.60 0.00 43.74 3.67
285 422 1.393858 CGACGTTCGAAAAGTGACACG 60.394 52.381 11.60 6.39 43.74 4.49
286 423 1.585214 GACGTTCGAAAAGTGACACGT 59.415 47.619 11.60 9.52 43.19 4.49
297 500 5.560966 AAAGTGACACGTTTCATCAGTTT 57.439 34.783 7.79 10.80 39.85 2.66
299 502 5.652744 AGTGACACGTTTCATCAGTTTAC 57.347 39.130 7.79 0.00 0.00 2.01
317 563 5.891551 AGTTTACTGGTGAACCAAGAAACAT 59.108 36.000 25.75 15.73 46.97 2.71
318 564 5.766150 TTACTGGTGAACCAAGAAACATG 57.234 39.130 3.33 0.00 46.97 3.21
320 566 3.221771 CTGGTGAACCAAGAAACATGGA 58.778 45.455 3.33 0.00 46.97 3.41
340 586 8.713036 ACATGGATAGAATAGAAGAAGAAAGCT 58.287 33.333 0.00 0.00 0.00 3.74
348 594 8.431222 AGAATAGAAGAAGAAAGCTAGATGCAT 58.569 33.333 0.00 0.00 45.94 3.96
349 595 7.966246 ATAGAAGAAGAAAGCTAGATGCATG 57.034 36.000 2.46 0.00 45.94 4.06
350 596 5.124645 AGAAGAAGAAAGCTAGATGCATGG 58.875 41.667 2.46 0.00 45.94 3.66
351 597 4.500499 AGAAGAAAGCTAGATGCATGGT 57.500 40.909 2.46 0.00 45.94 3.55
354 600 3.539604 AGAAAGCTAGATGCATGGTCAC 58.460 45.455 2.46 0.00 45.94 3.67
355 601 3.054875 AGAAAGCTAGATGCATGGTCACA 60.055 43.478 2.46 0.00 45.94 3.58
363 671 6.071896 GCTAGATGCATGGTCACATACTACTA 60.072 42.308 2.46 0.00 42.31 1.82
368 676 6.749139 TGCATGGTCACATACTACTAATCTC 58.251 40.000 0.00 0.00 34.99 2.75
374 682 7.228906 TGGTCACATACTACTAATCTCTGTAGC 59.771 40.741 0.00 0.00 39.60 3.58
375 683 7.308710 GGTCACATACTACTAATCTCTGTAGCC 60.309 44.444 0.00 0.00 39.60 3.93
376 684 7.228906 GTCACATACTACTAATCTCTGTAGCCA 59.771 40.741 0.00 0.00 39.60 4.75
377 685 7.445707 TCACATACTACTAATCTCTGTAGCCAG 59.554 40.741 0.00 0.00 39.60 4.85
378 686 7.229707 CACATACTACTAATCTCTGTAGCCAGT 59.770 40.741 0.00 0.00 39.60 4.00
379 687 7.780745 ACATACTACTAATCTCTGTAGCCAGTT 59.219 37.037 0.00 0.00 39.60 3.16
385 701 5.948992 AATCTCTGTAGCCAGTTCAAAAC 57.051 39.130 0.00 0.00 39.82 2.43
386 702 4.689612 TCTCTGTAGCCAGTTCAAAACT 57.310 40.909 0.00 0.00 44.06 2.66
388 704 6.360370 TCTCTGTAGCCAGTTCAAAACTAT 57.640 37.500 0.00 0.00 40.46 2.12
394 710 4.327680 AGCCAGTTCAAAACTATGTCTCC 58.672 43.478 0.00 0.00 40.46 3.71
405 721 4.851639 ACTATGTCTCCAAATGCTCCTT 57.148 40.909 0.00 0.00 0.00 3.36
406 722 5.957771 ACTATGTCTCCAAATGCTCCTTA 57.042 39.130 0.00 0.00 0.00 2.69
407 723 5.923204 ACTATGTCTCCAAATGCTCCTTAG 58.077 41.667 0.00 0.00 0.00 2.18
435 751 2.498167 AGCTGCTGTACAACAAAGAGG 58.502 47.619 0.00 0.00 0.00 3.69
441 757 4.278170 TGCTGTACAACAAAGAGGGAAATG 59.722 41.667 0.00 0.00 0.00 2.32
446 766 4.277476 ACAACAAAGAGGGAAATGTGTGA 58.723 39.130 0.00 0.00 0.00 3.58
447 767 4.097892 ACAACAAAGAGGGAAATGTGTGAC 59.902 41.667 0.00 0.00 0.00 3.67
451 771 3.045601 AGAGGGAAATGTGTGACGAAG 57.954 47.619 0.00 0.00 0.00 3.79
457 777 1.800805 AATGTGTGACGAAGCTGAGG 58.199 50.000 0.00 0.00 0.00 3.86
478 798 2.684754 AAAAATTTGGTGCGCATTGC 57.315 40.000 15.91 0.00 46.70 3.56
504 824 2.282958 AGCCGTCGGGTGAAGAGA 60.283 61.111 16.65 0.00 34.97 3.10
505 825 1.906824 AGCCGTCGGGTGAAGAGAA 60.907 57.895 16.65 0.00 34.97 2.87
506 826 1.218316 GCCGTCGGGTGAAGAGAAT 59.782 57.895 14.38 0.00 34.97 2.40
514 834 1.076705 GTGAAGAGAATGGGGGCCC 60.077 63.158 15.76 15.76 0.00 5.80
527 847 2.836187 GGGCCCAACACCACCACTA 61.836 63.158 19.95 0.00 0.00 2.74
528 848 1.151908 GGCCCAACACCACCACTAA 59.848 57.895 0.00 0.00 0.00 2.24
529 849 0.893727 GGCCCAACACCACCACTAAG 60.894 60.000 0.00 0.00 0.00 2.18
530 850 1.524008 GCCCAACACCACCACTAAGC 61.524 60.000 0.00 0.00 0.00 3.09
532 852 0.893727 CCAACACCACCACTAAGCCC 60.894 60.000 0.00 0.00 0.00 5.19
534 854 1.412453 AACACCACCACTAAGCCCGA 61.412 55.000 0.00 0.00 0.00 5.14
535 855 1.079127 CACCACCACTAAGCCCGAG 60.079 63.158 0.00 0.00 0.00 4.63
536 856 1.535687 ACCACCACTAAGCCCGAGT 60.536 57.895 0.00 0.00 0.00 4.18
537 857 1.079127 CCACCACTAAGCCCGAGTG 60.079 63.158 3.78 3.78 43.32 3.51
551 883 1.370064 GAGTGCTACAACCACGGGT 59.630 57.895 0.00 0.00 38.22 5.28
552 884 0.604578 GAGTGCTACAACCACGGGTA 59.395 55.000 0.00 0.00 38.22 3.69
553 885 0.606604 AGTGCTACAACCACGGGTAG 59.393 55.000 0.00 0.00 39.92 3.18
563 895 1.189524 CCACGGGTAGGGTGAACTCA 61.190 60.000 0.00 0.00 37.60 3.41
573 905 1.614413 GGGTGAACTCACTCGTCTCTT 59.386 52.381 9.60 0.00 45.73 2.85
602 936 1.826385 CCGCCCAAATGAAAGAGAGT 58.174 50.000 0.00 0.00 0.00 3.24
697 1051 3.393970 CGAGCCAGGAGGAAGCCA 61.394 66.667 0.00 0.00 36.89 4.75
970 1375 1.738099 CTCGGCGTCTTCCACCAAG 60.738 63.158 6.85 0.00 0.00 3.61
982 1387 1.358787 TCCACCAAGGCAAGGATGATT 59.641 47.619 2.02 0.00 37.29 2.57
985 1390 3.094572 CACCAAGGCAAGGATGATTTCT 58.905 45.455 2.02 0.00 0.00 2.52
1026 1431 4.587189 CCCGACCGAATCCCTCGC 62.587 72.222 0.00 0.00 46.71 5.03
1029 1434 2.586357 GACCGAATCCCTCGCAGC 60.586 66.667 0.00 0.00 46.71 5.25
1054 1459 4.148825 ACCTGCATCTCCGCGACC 62.149 66.667 8.23 0.00 33.35 4.79
1126 1558 0.733566 GTTCACGTACAATCGGCCGA 60.734 55.000 33.12 33.12 34.94 5.54
1141 1576 0.179111 GCCGAATGAGGTCATCGTGA 60.179 55.000 0.00 0.00 35.10 4.35
1160 1595 4.280494 CGACCCTATCACCGGCGG 62.280 72.222 27.06 27.06 0.00 6.13
1231 1672 3.485431 CTGTGCTCTGCGCTTCCG 61.485 66.667 9.73 0.00 40.03 4.30
1234 1675 4.742201 TGCTCTGCGCTTCCGTCC 62.742 66.667 9.73 0.00 40.11 4.79
1297 1738 4.696899 AACGTCGTGTTGATCTCTGATA 57.303 40.909 0.00 0.00 40.00 2.15
1305 1746 3.447229 TGTTGATCTCTGATAACGGAGCA 59.553 43.478 3.98 0.00 45.99 4.26
1306 1747 4.100035 TGTTGATCTCTGATAACGGAGCAT 59.900 41.667 3.98 0.00 45.99 3.79
1309 1750 5.958955 TGATCTCTGATAACGGAGCATATG 58.041 41.667 3.98 0.00 45.99 1.78
1335 1776 5.542635 TCCACCTATCACTTGTGTTTACTCT 59.457 40.000 0.46 0.00 0.00 3.24
1446 1887 1.953686 GCACTTTACTGGTTGCTGGAA 59.046 47.619 0.00 0.00 0.00 3.53
1458 1901 3.495001 GGTTGCTGGAATCTATAAGCGAC 59.505 47.826 5.50 5.50 45.46 5.19
1526 1969 0.036294 GGGCCTCCCGTTATAGATGC 60.036 60.000 0.84 0.00 32.13 3.91
1535 1978 4.003648 CCCGTTATAGATGCTGATTTCCC 58.996 47.826 0.00 0.00 0.00 3.97
1585 2028 0.895100 GGATGGTGCTGTTGGCTTCA 60.895 55.000 0.00 0.00 42.39 3.02
1602 2045 3.355378 CTTCACCATATTGTCTTGCCCA 58.645 45.455 0.00 0.00 0.00 5.36
1605 2048 2.824936 CACCATATTGTCTTGCCCACAA 59.175 45.455 0.00 0.00 38.12 3.33
1636 2079 3.887716 GTGGCAGAGGAATATCAATTGCT 59.112 43.478 0.00 0.00 45.47 3.91
1717 2160 4.471386 TCCCTAAACAGATTCAAGGAGAGG 59.529 45.833 0.00 0.00 0.00 3.69
1727 2170 0.967887 CAAGGAGAGGAGGCAGACGA 60.968 60.000 0.00 0.00 0.00 4.20
1787 2230 0.179045 ATTCTATCTGTGGGCCGTGC 60.179 55.000 0.00 0.00 0.00 5.34
1803 2246 1.089920 GTGCTGCCTATGTGGTTCAG 58.910 55.000 0.00 0.00 38.35 3.02
1846 2289 5.065602 AGGAAACTTTGTGAAAACGGTAGTC 59.934 40.000 0.00 0.00 37.44 2.59
1853 2296 5.717078 TGTGAAAACGGTAGTCATACTCT 57.283 39.130 0.00 0.00 32.12 3.24
1863 2306 7.225011 ACGGTAGTCATACTCTCTATCATTCA 58.775 38.462 0.00 0.00 32.12 2.57
1908 2351 6.660949 CAGGTGATTTTTCATCCTTAGTCCTT 59.339 38.462 0.00 0.00 0.00 3.36
2020 2482 9.383519 CTTAGTTATCATCCTTTTGCTAGACAA 57.616 33.333 0.00 0.00 36.13 3.18
2124 2606 6.332735 AGACAACCTTATGGCTTTCTTTTC 57.667 37.500 0.00 0.00 33.97 2.29
2133 2615 8.186821 CCTTATGGCTTTCTTTTCTGTTATCAG 58.813 37.037 0.00 0.00 42.54 2.90
2135 2617 6.959639 TGGCTTTCTTTTCTGTTATCAGTT 57.040 33.333 0.83 0.00 41.91 3.16
2177 3060 4.956085 TGCAAGTGACTAGTGTAACACAT 58.044 39.130 13.21 0.79 41.43 3.21
2184 3067 8.366671 AGTGACTAGTGTAACACATCTTTTTC 57.633 34.615 13.21 0.00 41.43 2.29
2185 3068 8.204836 AGTGACTAGTGTAACACATCTTTTTCT 58.795 33.333 13.21 0.00 41.43 2.52
2255 3138 0.527565 CCCAAGATCACTTTTGCCGG 59.472 55.000 0.00 0.00 33.70 6.13
2256 3139 1.247567 CCAAGATCACTTTTGCCGGT 58.752 50.000 1.90 0.00 33.70 5.28
2275 3158 5.278120 GCCGGTGTAGTGTTTATGAGTTTTT 60.278 40.000 1.90 0.00 0.00 1.94
2285 3168 7.224557 AGTGTTTATGAGTTTTTGCATGTTTCC 59.775 33.333 0.00 0.00 0.00 3.13
2286 3169 6.199908 TGTTTATGAGTTTTTGCATGTTTCCG 59.800 34.615 0.00 0.00 0.00 4.30
2348 3231 3.470567 CGTCTGTGAAGCGTCGCC 61.471 66.667 14.86 0.00 32.98 5.54
2351 3234 0.388134 GTCTGTGAAGCGTCGCCTAA 60.388 55.000 14.86 0.00 32.98 2.69
3215 4180 4.997395 GGATAGAGATGCGCAAATCCTTAA 59.003 41.667 17.11 2.11 32.00 1.85
3296 4261 0.889186 AAAGGCGCCGTTCTGTCATT 60.889 50.000 22.52 3.62 0.00 2.57
3558 4533 5.163693 CCTTACCGCCTTAAAAACATAGGTG 60.164 44.000 0.00 0.00 38.89 4.00
3559 4534 4.023726 ACCGCCTTAAAAACATAGGTGA 57.976 40.909 0.00 0.00 41.09 4.02
3560 4535 4.595986 ACCGCCTTAAAAACATAGGTGAT 58.404 39.130 0.00 0.00 41.09 3.06
3561 4536 4.398044 ACCGCCTTAAAAACATAGGTGATG 59.602 41.667 0.00 0.00 41.09 3.07
3562 4537 4.638421 CCGCCTTAAAAACATAGGTGATGA 59.362 41.667 0.00 0.00 41.09 2.92
3563 4538 5.220854 CCGCCTTAAAAACATAGGTGATGAG 60.221 44.000 0.00 0.00 41.09 2.90
3565 4540 6.128007 CGCCTTAAAAACATAGGTGATGAGTT 60.128 38.462 0.00 0.00 41.09 3.01
3572 4547 9.520515 AAAAACATAGGTGATGAGTTAATGAGT 57.479 29.630 0.00 0.00 39.06 3.41
3719 4720 6.512342 ACCAGTATCAGTAGTGAGTTGTAC 57.488 41.667 6.39 3.96 35.66 2.90
3737 4738 8.615878 AGTTGTACAACATAAATACAAGAGCA 57.384 30.769 33.93 0.00 43.47 4.26
3742 4749 9.490663 GTACAACATAAATACAAGAGCATGTTC 57.509 33.333 0.50 0.50 35.12 3.18
3844 4860 9.762933 TTTATTAAATGATTGCCTTATGCTTCC 57.237 29.630 0.00 0.00 42.00 3.46
3894 4915 3.958147 TGGAGCTGAAATGATGCATGATT 59.042 39.130 2.46 4.23 0.00 2.57
3903 4924 3.929955 TGATGCATGATTCACAGGGTA 57.070 42.857 2.46 0.00 0.00 3.69
3932 4960 6.403866 TTGGTTTGATGTTCTAATGTGCTT 57.596 33.333 0.00 0.00 0.00 3.91
4016 5050 2.495669 CACTTTGGGAAATATTGGGCGT 59.504 45.455 0.00 0.00 0.00 5.68
4018 5052 2.818751 TTGGGAAATATTGGGCGTCT 57.181 45.000 0.00 0.00 0.00 4.18
4112 5151 5.757808 AGACAAACAATTAAAATGGTGGTGC 59.242 36.000 0.00 0.00 0.00 5.01
4126 5165 4.148838 TGGTGGTGCTGCTAAGTAAAAAT 58.851 39.130 0.00 0.00 0.00 1.82
4135 5175 6.159293 GCTGCTAAGTAAAAATTGGCTCTTT 58.841 36.000 0.00 0.00 35.40 2.52
4163 5206 6.977213 TGGATCACAAATGATATGCAGATTG 58.023 36.000 0.00 0.00 46.01 2.67
4180 5223 5.622914 GCAGATTGTCCAAATGTTGTATGCT 60.623 40.000 0.00 0.00 0.00 3.79
4181 5224 5.803461 CAGATTGTCCAAATGTTGTATGCTG 59.197 40.000 0.00 0.00 0.00 4.41
4194 5237 5.480422 TGTTGTATGCTGAGAGTTCTCCTTA 59.520 40.000 6.68 0.00 42.20 2.69
4316 5366 7.396540 AATTCATGTGATAAGGTTGGAAGAC 57.603 36.000 0.00 0.00 0.00 3.01
4335 5391 8.383175 TGGAAGACTTACTTTGTTGATATTCCT 58.617 33.333 0.00 0.00 39.13 3.36
4340 5396 9.315525 GACTTACTTTGTTGATATTCCTAGGAC 57.684 37.037 12.22 0.00 0.00 3.85
4358 5414 8.344546 TCCTAGGACATATAGCCAGTAATATGT 58.655 37.037 7.62 7.49 46.76 2.29
4389 5455 2.157817 TCCTTTTTAGGAGGTGGGGGTA 60.158 50.000 0.00 0.00 35.71 3.69
4390 5456 2.856864 CCTTTTTAGGAGGTGGGGGTAT 59.143 50.000 0.00 0.00 0.00 2.73
4391 5457 3.271225 CCTTTTTAGGAGGTGGGGGTATT 59.729 47.826 0.00 0.00 0.00 1.89
4406 5485 5.724854 TGGGGGTATTGTATATAGCTCTTCC 59.275 44.000 0.00 0.00 0.00 3.46
4465 5575 7.278868 CCTAGATGTCACTGTTAGATTTTGTCC 59.721 40.741 0.00 0.00 0.00 4.02
4471 5581 6.588756 GTCACTGTTAGATTTTGTCCGTATCA 59.411 38.462 0.00 0.00 0.00 2.15
4472 5582 7.277981 GTCACTGTTAGATTTTGTCCGTATCAT 59.722 37.037 0.00 0.00 0.00 2.45
4473 5583 7.277760 TCACTGTTAGATTTTGTCCGTATCATG 59.722 37.037 0.00 0.00 0.00 3.07
4474 5584 7.064609 CACTGTTAGATTTTGTCCGTATCATGT 59.935 37.037 0.00 0.00 0.00 3.21
4517 5724 1.957877 CGCTTTTGTTTTCCCCAGGTA 59.042 47.619 0.00 0.00 0.00 3.08
4571 5778 0.439600 GTTTGCCGCATTGCATCAAC 59.560 50.000 9.69 2.26 41.70 3.18
4577 5784 1.407434 CGCATTGCATCAACGTTGTT 58.593 45.000 26.47 16.71 0.00 2.83
4589 5796 3.105203 CAACGTTGTTGGCAGTGTTTAG 58.895 45.455 20.21 0.00 0.00 1.85
4593 5800 3.308530 GTTGTTGGCAGTGTTTAGATGC 58.691 45.455 0.00 0.00 39.25 3.91
4632 5839 2.478872 TTCTGCCCTAGTCTAGCCAT 57.521 50.000 0.86 0.00 0.00 4.40
4653 5864 5.473931 CATGTCTCTAGTGTAGCAAGTTGT 58.526 41.667 4.48 0.00 0.00 3.32
4666 5877 8.347035 GTGTAGCAAGTTGTTTTTGAATACCTA 58.653 33.333 4.48 0.00 0.00 3.08
4689 5900 3.366052 TCCAGGGAATTTCAGCTTACC 57.634 47.619 0.00 0.00 0.00 2.85
4690 5901 2.025321 TCCAGGGAATTTCAGCTTACCC 60.025 50.000 0.00 0.00 37.79 3.69
4721 5937 4.864916 ATCAAGTTGGATTTCGTCATCG 57.135 40.909 2.34 0.00 38.55 3.84
4725 5941 3.857052 AGTTGGATTTCGTCATCGCTTA 58.143 40.909 0.00 0.00 36.96 3.09
4746 5962 6.256757 GCTTATTTTTGTTAGGTGTTTGTGCA 59.743 34.615 0.00 0.00 0.00 4.57
4763 5983 3.077359 GTGCATGGTAGCTCTTCTGTTT 58.923 45.455 0.00 0.00 34.99 2.83
4765 5985 4.878397 GTGCATGGTAGCTCTTCTGTTTAT 59.122 41.667 0.00 0.00 34.99 1.40
4767 5987 5.104776 TGCATGGTAGCTCTTCTGTTTATCT 60.105 40.000 0.00 0.00 34.99 1.98
4809 6032 6.457122 CGTGTATCACCAAAACTTGTGTGTTA 60.457 38.462 0.00 0.00 35.08 2.41
4838 6061 2.035066 GCTTGTCAGCTGTGGTTTTGAT 59.965 45.455 14.67 0.00 43.51 2.57
4850 6073 6.183360 GCTGTGGTTTTGATAAGCATGTCTAT 60.183 38.462 0.00 0.00 0.00 1.98
4860 6083 9.618890 TTGATAAGCATGTCTATTTTCTTAGCT 57.381 29.630 0.00 0.00 0.00 3.32
4861 6084 9.049523 TGATAAGCATGTCTATTTTCTTAGCTG 57.950 33.333 0.00 0.00 0.00 4.24
4862 6085 8.970859 ATAAGCATGTCTATTTTCTTAGCTGT 57.029 30.769 0.00 0.00 0.00 4.40
4864 6087 8.792830 AAGCATGTCTATTTTCTTAGCTGTAA 57.207 30.769 0.00 0.00 0.00 2.41
4865 6088 8.970859 AGCATGTCTATTTTCTTAGCTGTAAT 57.029 30.769 0.00 0.00 0.00 1.89
4866 6089 9.401058 AGCATGTCTATTTTCTTAGCTGTAATT 57.599 29.630 0.00 0.00 0.00 1.40
4867 6090 9.657121 GCATGTCTATTTTCTTAGCTGTAATTC 57.343 33.333 0.00 0.00 0.00 2.17
4877 6100 9.862371 TTTCTTAGCTGTAATTCTTAGTCTGAG 57.138 33.333 0.00 0.00 0.00 3.35
4878 6101 8.809468 TCTTAGCTGTAATTCTTAGTCTGAGA 57.191 34.615 0.00 0.00 0.00 3.27
4879 6102 8.898761 TCTTAGCTGTAATTCTTAGTCTGAGAG 58.101 37.037 0.00 0.00 0.00 3.20
4880 6103 8.582657 TTAGCTGTAATTCTTAGTCTGAGAGT 57.417 34.615 0.00 0.00 0.00 3.24
4881 6104 6.862209 AGCTGTAATTCTTAGTCTGAGAGTG 58.138 40.000 0.00 0.00 0.00 3.51
4882 6105 6.661377 AGCTGTAATTCTTAGTCTGAGAGTGA 59.339 38.462 0.00 0.00 0.00 3.41
4883 6106 6.972328 GCTGTAATTCTTAGTCTGAGAGTGAG 59.028 42.308 2.87 2.87 0.00 3.51
4884 6107 7.362574 GCTGTAATTCTTAGTCTGAGAGTGAGT 60.363 40.741 8.67 0.00 0.00 3.41
4885 6108 7.821652 TGTAATTCTTAGTCTGAGAGTGAGTG 58.178 38.462 8.67 0.00 0.00 3.51
4886 6109 7.665974 TGTAATTCTTAGTCTGAGAGTGAGTGA 59.334 37.037 8.67 0.96 0.00 3.41
4887 6110 6.757897 ATTCTTAGTCTGAGAGTGAGTGAG 57.242 41.667 8.67 0.00 0.00 3.51
4888 6111 4.584874 TCTTAGTCTGAGAGTGAGTGAGG 58.415 47.826 8.67 0.00 0.00 3.86
4889 6112 2.969821 AGTCTGAGAGTGAGTGAGGT 57.030 50.000 0.00 0.00 0.00 3.85
4890 6113 3.237268 AGTCTGAGAGTGAGTGAGGTT 57.763 47.619 0.00 0.00 0.00 3.50
4891 6114 2.890311 AGTCTGAGAGTGAGTGAGGTTG 59.110 50.000 0.00 0.00 0.00 3.77
4892 6115 1.615883 TCTGAGAGTGAGTGAGGTTGC 59.384 52.381 0.00 0.00 0.00 4.17
4893 6116 1.342496 CTGAGAGTGAGTGAGGTTGCA 59.658 52.381 0.00 0.00 0.00 4.08
4894 6117 1.973515 TGAGAGTGAGTGAGGTTGCAT 59.026 47.619 0.00 0.00 0.00 3.96
4895 6118 2.028658 TGAGAGTGAGTGAGGTTGCATC 60.029 50.000 0.00 0.00 0.00 3.91
4896 6119 2.233431 GAGAGTGAGTGAGGTTGCATCT 59.767 50.000 0.00 0.00 0.00 2.90
4897 6120 2.636893 AGAGTGAGTGAGGTTGCATCTT 59.363 45.455 0.00 0.00 0.00 2.40
4898 6121 3.834813 AGAGTGAGTGAGGTTGCATCTTA 59.165 43.478 0.00 0.00 0.00 2.10
4899 6122 4.469227 AGAGTGAGTGAGGTTGCATCTTAT 59.531 41.667 0.00 0.00 0.00 1.73
4900 6123 5.046014 AGAGTGAGTGAGGTTGCATCTTATT 60.046 40.000 0.00 0.00 0.00 1.40
4901 6124 5.564550 AGTGAGTGAGGTTGCATCTTATTT 58.435 37.500 0.00 0.00 0.00 1.40
4902 6125 5.413833 AGTGAGTGAGGTTGCATCTTATTTG 59.586 40.000 0.00 0.00 0.00 2.32
4903 6126 5.182001 GTGAGTGAGGTTGCATCTTATTTGT 59.818 40.000 0.00 0.00 0.00 2.83
4904 6127 6.371548 GTGAGTGAGGTTGCATCTTATTTGTA 59.628 38.462 0.00 0.00 0.00 2.41
4905 6128 6.939730 TGAGTGAGGTTGCATCTTATTTGTAA 59.060 34.615 0.00 0.00 0.00 2.41
4906 6129 7.611467 TGAGTGAGGTTGCATCTTATTTGTAAT 59.389 33.333 0.00 0.00 0.00 1.89
4907 6130 7.989826 AGTGAGGTTGCATCTTATTTGTAATC 58.010 34.615 0.00 0.00 0.00 1.75
4908 6131 7.067494 AGTGAGGTTGCATCTTATTTGTAATCC 59.933 37.037 0.00 0.00 0.00 3.01
4909 6132 7.067494 GTGAGGTTGCATCTTATTTGTAATCCT 59.933 37.037 0.00 0.00 0.00 3.24
4910 6133 7.615365 TGAGGTTGCATCTTATTTGTAATCCTT 59.385 33.333 0.00 0.00 0.00 3.36
4911 6134 8.000780 AGGTTGCATCTTATTTGTAATCCTTC 57.999 34.615 0.00 0.00 0.00 3.46
4912 6135 7.836183 AGGTTGCATCTTATTTGTAATCCTTCT 59.164 33.333 0.00 0.00 0.00 2.85
4913 6136 8.131731 GGTTGCATCTTATTTGTAATCCTTCTC 58.868 37.037 0.00 0.00 0.00 2.87
4914 6137 8.897752 GTTGCATCTTATTTGTAATCCTTCTCT 58.102 33.333 0.00 0.00 0.00 3.10
4915 6138 8.442632 TGCATCTTATTTGTAATCCTTCTCTG 57.557 34.615 0.00 0.00 0.00 3.35
4916 6139 7.012704 TGCATCTTATTTGTAATCCTTCTCTGC 59.987 37.037 0.00 0.00 0.00 4.26
4917 6140 7.012704 GCATCTTATTTGTAATCCTTCTCTGCA 59.987 37.037 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 5.883661 AGTATGCGATGAAAATCAAACCTG 58.116 37.500 0.00 0.00 0.00 4.00
57 58 5.971763 AGAAGCCTAGACATGTAACAGAAG 58.028 41.667 0.00 0.00 0.00 2.85
96 97 8.347004 TGCAATCAGTAATCCAGTTCAAAATA 57.653 30.769 0.00 0.00 0.00 1.40
130 131 8.945481 TTGAACCAGGATTGCATTATTTTATG 57.055 30.769 0.00 0.00 0.00 1.90
132 133 9.956640 ATTTTGAACCAGGATTGCATTATTTTA 57.043 25.926 0.00 0.00 0.00 1.52
136 137 7.706179 CGTTATTTTGAACCAGGATTGCATTAT 59.294 33.333 0.00 0.00 0.00 1.28
137 138 7.032580 CGTTATTTTGAACCAGGATTGCATTA 58.967 34.615 0.00 0.00 0.00 1.90
147 155 5.179368 TGAAGAGAGCGTTATTTTGAACCAG 59.821 40.000 0.00 0.00 0.00 4.00
167 175 3.251004 CCGGGAACAGTTTTTCTCTGAAG 59.749 47.826 0.00 0.00 36.81 3.02
170 178 1.880027 CCCGGGAACAGTTTTTCTCTG 59.120 52.381 18.48 0.00 38.68 3.35
171 179 1.202891 CCCCGGGAACAGTTTTTCTCT 60.203 52.381 26.32 0.00 0.00 3.10
172 180 1.202842 TCCCCGGGAACAGTTTTTCTC 60.203 52.381 26.32 0.00 0.00 2.87
173 181 0.848053 TCCCCGGGAACAGTTTTTCT 59.152 50.000 26.32 0.00 0.00 2.52
174 182 1.694844 TTCCCCGGGAACAGTTTTTC 58.305 50.000 26.32 0.00 36.71 2.29
175 183 2.158370 AGATTCCCCGGGAACAGTTTTT 60.158 45.455 26.32 3.27 45.07 1.94
176 184 1.427753 AGATTCCCCGGGAACAGTTTT 59.572 47.619 26.32 4.07 45.07 2.43
177 185 1.073098 AGATTCCCCGGGAACAGTTT 58.927 50.000 26.32 4.88 45.07 2.66
179 187 1.562672 CCAGATTCCCCGGGAACAGT 61.563 60.000 26.32 5.71 45.07 3.55
180 188 1.224592 CCAGATTCCCCGGGAACAG 59.775 63.158 26.32 13.28 45.07 3.16
181 189 2.978946 GCCAGATTCCCCGGGAACA 61.979 63.158 26.32 5.14 45.07 3.18
182 190 2.124278 GCCAGATTCCCCGGGAAC 60.124 66.667 26.32 14.59 45.07 3.62
183 191 2.286121 AGCCAGATTCCCCGGGAA 60.286 61.111 26.32 21.61 46.39 3.97
184 192 3.089874 CAGCCAGATTCCCCGGGA 61.090 66.667 26.32 1.94 0.00 5.14
185 193 2.210144 TTTCAGCCAGATTCCCCGGG 62.210 60.000 15.80 15.80 0.00 5.73
186 194 1.032114 GTTTCAGCCAGATTCCCCGG 61.032 60.000 0.00 0.00 0.00 5.73
187 195 1.369091 CGTTTCAGCCAGATTCCCCG 61.369 60.000 0.00 0.00 0.00 5.73
189 197 1.066143 TCTCGTTTCAGCCAGATTCCC 60.066 52.381 0.00 0.00 0.00 3.97
190 198 2.003301 GTCTCGTTTCAGCCAGATTCC 58.997 52.381 0.00 0.00 0.00 3.01
195 332 1.284982 CCGTGTCTCGTTTCAGCCAG 61.285 60.000 0.00 0.00 37.94 4.85
205 342 0.108615 AATTGCTCCTCCGTGTCTCG 60.109 55.000 0.00 0.00 39.52 4.04
222 359 1.133976 AGGAATCCGCAAGCTGCTAAT 60.134 47.619 0.90 0.00 42.25 1.73
229 366 5.438761 ACATAATTTAGGAATCCGCAAGC 57.561 39.130 0.00 0.00 0.00 4.01
235 372 7.308589 CGAACCATGGACATAATTTAGGAATCC 60.309 40.741 21.47 0.00 0.00 3.01
240 377 6.935741 TTCGAACCATGGACATAATTTAGG 57.064 37.500 21.47 0.00 0.00 2.69
242 379 6.594547 TCGTTTCGAACCATGGACATAATTTA 59.405 34.615 21.47 0.00 31.06 1.40
252 389 0.863144 AACGTCGTTTCGAACCATGG 59.137 50.000 11.19 11.19 37.72 3.66
253 390 2.207041 GAACGTCGTTTCGAACCATG 57.793 50.000 12.67 0.00 37.72 3.66
263 400 2.028404 GTGTCACTTTTCGAACGTCGTT 59.972 45.455 11.08 11.08 41.35 3.85
265 402 1.393858 CGTGTCACTTTTCGAACGTCG 60.394 52.381 0.00 0.00 42.10 5.12
266 403 1.585214 ACGTGTCACTTTTCGAACGTC 59.415 47.619 0.00 0.00 39.87 4.34
267 404 1.632422 ACGTGTCACTTTTCGAACGT 58.368 45.000 0.00 0.00 39.24 3.99
268 405 2.706760 AACGTGTCACTTTTCGAACG 57.293 45.000 0.00 0.00 37.09 3.95
269 406 3.993547 TGAAACGTGTCACTTTTCGAAC 58.006 40.909 22.65 7.21 38.65 3.95
270 407 4.330347 TGATGAAACGTGTCACTTTTCGAA 59.670 37.500 22.65 11.85 38.65 3.71
271 408 3.866327 TGATGAAACGTGTCACTTTTCGA 59.134 39.130 22.65 15.30 38.65 3.71
272 409 4.190304 TGATGAAACGTGTCACTTTTCG 57.810 40.909 22.65 4.69 38.65 3.46
274 411 5.560966 AACTGATGAAACGTGTCACTTTT 57.439 34.783 11.45 7.13 0.00 2.27
276 413 5.815740 AGTAAACTGATGAAACGTGTCACTT 59.184 36.000 11.45 0.00 0.00 3.16
277 414 5.234329 CAGTAAACTGATGAAACGTGTCACT 59.766 40.000 11.45 0.17 46.59 3.41
278 415 5.432157 CAGTAAACTGATGAAACGTGTCAC 58.568 41.667 11.45 5.99 46.59 3.67
279 416 4.509970 CCAGTAAACTGATGAAACGTGTCA 59.490 41.667 11.64 11.64 46.59 3.58
280 417 4.510340 ACCAGTAAACTGATGAAACGTGTC 59.490 41.667 11.69 0.00 46.59 3.67
281 418 4.272504 CACCAGTAAACTGATGAAACGTGT 59.727 41.667 11.69 0.00 46.59 4.49
282 419 4.509970 TCACCAGTAAACTGATGAAACGTG 59.490 41.667 11.69 8.87 43.23 4.49
317 563 9.647918 TCTAGCTTTCTTCTTCTATTCTATCCA 57.352 33.333 0.00 0.00 0.00 3.41
320 566 9.927668 GCATCTAGCTTTCTTCTTCTATTCTAT 57.072 33.333 0.00 0.00 41.15 1.98
336 582 3.572632 ATGTGACCATGCATCTAGCTT 57.427 42.857 0.00 0.00 45.94 3.74
338 584 4.000331 AGTATGTGACCATGCATCTAGC 58.000 45.455 0.00 0.00 45.96 3.42
340 586 7.833285 TTAGTAGTATGTGACCATGCATCTA 57.167 36.000 0.00 0.00 36.27 1.98
344 590 6.551227 AGAGATTAGTAGTATGTGACCATGCA 59.449 38.462 0.00 0.00 36.27 3.96
345 591 6.865726 CAGAGATTAGTAGTATGTGACCATGC 59.134 42.308 0.00 0.00 34.24 4.06
348 594 7.228906 GCTACAGAGATTAGTAGTATGTGACCA 59.771 40.741 0.00 0.00 39.82 4.02
349 595 7.308710 GGCTACAGAGATTAGTAGTATGTGACC 60.309 44.444 0.00 0.00 39.82 4.02
350 596 7.228906 TGGCTACAGAGATTAGTAGTATGTGAC 59.771 40.741 0.00 0.00 39.82 3.67
351 597 7.287810 TGGCTACAGAGATTAGTAGTATGTGA 58.712 38.462 0.00 0.00 39.82 3.58
374 682 6.633500 TTTGGAGACATAGTTTTGAACTGG 57.367 37.500 3.70 0.00 39.68 4.00
375 683 6.583806 GCATTTGGAGACATAGTTTTGAACTG 59.416 38.462 3.70 0.00 39.68 3.16
376 684 6.491403 AGCATTTGGAGACATAGTTTTGAACT 59.509 34.615 0.00 0.00 42.32 3.01
377 685 6.681777 AGCATTTGGAGACATAGTTTTGAAC 58.318 36.000 0.00 0.00 42.32 3.18
378 686 6.071952 GGAGCATTTGGAGACATAGTTTTGAA 60.072 38.462 0.00 0.00 42.32 2.69
379 687 5.415701 GGAGCATTTGGAGACATAGTTTTGA 59.584 40.000 0.00 0.00 42.32 2.69
421 737 5.067153 CACACATTTCCCTCTTTGTTGTACA 59.933 40.000 0.00 0.00 0.00 2.90
422 738 5.298276 TCACACATTTCCCTCTTTGTTGTAC 59.702 40.000 0.00 0.00 0.00 2.90
430 746 3.403038 CTTCGTCACACATTTCCCTCTT 58.597 45.455 0.00 0.00 0.00 2.85
435 751 2.143122 TCAGCTTCGTCACACATTTCC 58.857 47.619 0.00 0.00 0.00 3.13
441 757 1.865865 TTTCCTCAGCTTCGTCACAC 58.134 50.000 0.00 0.00 0.00 3.82
473 793 2.278596 GGCTGCATCTGCGCAATG 60.279 61.111 13.05 18.29 45.83 2.82
480 800 4.457496 ACCCGACGGCTGCATCTG 62.457 66.667 8.86 0.00 0.00 2.90
501 821 1.682344 GTGTTGGGCCCCCATTCTC 60.682 63.158 22.27 0.00 46.64 2.87
502 822 2.445155 GTGTTGGGCCCCCATTCT 59.555 61.111 22.27 0.00 46.64 2.40
503 823 2.683572 GGTGTTGGGCCCCCATTC 60.684 66.667 22.27 8.98 46.64 2.67
504 824 3.526428 TGGTGTTGGGCCCCCATT 61.526 61.111 22.27 0.00 46.64 3.16
505 825 4.315264 GTGGTGTTGGGCCCCCAT 62.315 66.667 22.27 0.00 46.64 4.00
514 834 1.234615 CGGGCTTAGTGGTGGTGTTG 61.235 60.000 0.00 0.00 0.00 3.33
521 841 2.663196 GCACTCGGGCTTAGTGGT 59.337 61.111 17.38 0.00 43.71 4.16
522 842 0.179108 GTAGCACTCGGGCTTAGTGG 60.179 60.000 17.38 4.34 42.71 4.00
527 847 1.003718 GGTTGTAGCACTCGGGCTT 60.004 57.895 0.00 0.00 42.71 4.35
529 849 2.033194 GTGGTTGTAGCACTCGGGC 61.033 63.158 2.02 0.00 42.83 6.13
530 850 1.736645 CGTGGTTGTAGCACTCGGG 60.737 63.158 7.33 0.00 43.87 5.14
532 852 1.736645 CCCGTGGTTGTAGCACTCG 60.737 63.158 7.33 0.00 43.87 4.18
534 854 0.606604 CTACCCGTGGTTGTAGCACT 59.393 55.000 7.33 0.00 43.87 4.40
535 855 0.390735 CCTACCCGTGGTTGTAGCAC 60.391 60.000 0.72 0.00 42.72 4.40
536 856 1.546589 CCCTACCCGTGGTTGTAGCA 61.547 60.000 0.72 0.00 37.09 3.49
537 857 1.219935 CCCTACCCGTGGTTGTAGC 59.780 63.158 0.72 0.00 37.09 3.58
558 890 0.241481 GCGGAAGAGACGAGTGAGTT 59.759 55.000 0.00 0.00 0.00 3.01
563 895 4.117661 GCGGCGGAAGAGACGAGT 62.118 66.667 9.78 0.00 0.00 4.18
650 993 4.222847 GATGACCCGACGGCCTCC 62.223 72.222 8.86 0.00 0.00 4.30
677 1031 3.393970 CTTCCTCCTGGCTCGCCA 61.394 66.667 10.64 10.64 45.02 5.69
678 1032 4.847444 GCTTCCTCCTGGCTCGCC 62.847 72.222 0.00 0.00 0.00 5.54
719 1094 4.191015 GGATCTGGGAACGGGGGC 62.191 72.222 0.00 0.00 37.31 5.80
720 1095 3.861797 CGGATCTGGGAACGGGGG 61.862 72.222 0.00 0.00 37.31 5.40
721 1096 4.547367 GCGGATCTGGGAACGGGG 62.547 72.222 3.14 0.00 37.31 5.73
722 1097 4.891727 CGCGGATCTGGGAACGGG 62.892 72.222 13.18 1.12 37.31 5.28
900 1299 1.379146 GTGGAGGAACTTGGGGTCC 59.621 63.158 0.00 0.00 41.55 4.46
970 1375 4.142293 GGTGAAGAAGAAATCATCCTTGCC 60.142 45.833 0.00 0.00 0.00 4.52
982 1387 2.025037 CCATGATGGGGGTGAAGAAGAA 60.025 50.000 2.79 0.00 32.67 2.52
985 1390 1.284785 GTCCATGATGGGGGTGAAGAA 59.715 52.381 12.26 0.00 38.32 2.52
1025 1430 4.090057 GCAGGTCGAAACGGCTGC 62.090 66.667 6.31 0.00 34.82 5.25
1026 1431 1.970917 GATGCAGGTCGAAACGGCTG 61.971 60.000 13.02 0.00 0.00 4.85
1029 1434 1.084370 GGAGATGCAGGTCGAAACGG 61.084 60.000 0.00 0.00 0.00 4.44
1106 1535 1.705727 GGCCGATTGTACGTGAACG 59.294 57.895 0.00 0.40 46.33 3.95
1107 1536 0.733566 TCGGCCGATTGTACGTGAAC 60.734 55.000 27.28 0.00 0.00 3.18
1108 1537 0.038435 TTCGGCCGATTGTACGTGAA 60.038 50.000 31.56 6.73 0.00 3.18
1114 1543 0.828022 ACCTCATTCGGCCGATTGTA 59.172 50.000 35.92 25.51 0.00 2.41
1126 1558 0.817654 TCGCTCACGATGACCTCATT 59.182 50.000 0.00 0.00 45.12 2.57
1141 1576 3.537874 GCCGGTGATAGGGTCGCT 61.538 66.667 1.90 0.00 37.50 4.93
1173 1608 2.930562 AACTCTGGCGGAAGGGCT 60.931 61.111 0.00 0.00 42.84 5.19
1177 1612 0.179134 CCTACGAACTCTGGCGGAAG 60.179 60.000 0.00 0.00 0.00 3.46
1228 1669 1.198094 ATGTGGTCATGGTGGACGGA 61.198 55.000 0.00 0.00 38.70 4.69
1297 1738 2.050144 AGGTGGATCATATGCTCCGTT 58.950 47.619 18.37 5.95 38.98 4.44
1305 1746 6.753913 ACACAAGTGATAGGTGGATCATAT 57.246 37.500 7.28 0.00 38.11 1.78
1306 1747 6.560003 AACACAAGTGATAGGTGGATCATA 57.440 37.500 7.28 0.00 38.11 2.15
1309 1750 6.407202 AGTAAACACAAGTGATAGGTGGATC 58.593 40.000 7.28 0.00 36.87 3.36
1321 1762 6.276847 CAGTCTCTGAAGAGTAAACACAAGT 58.723 40.000 7.20 0.00 42.60 3.16
1335 1776 1.770658 CCCCATATGCCAGTCTCTGAA 59.229 52.381 0.00 0.00 32.44 3.02
1446 1887 1.273606 AGCATGCCGTCGCTTATAGAT 59.726 47.619 15.66 0.00 33.81 1.98
1458 1901 3.613737 CCAAATCAAACTTAAGCATGCCG 59.386 43.478 15.66 3.08 0.00 5.69
1520 1963 2.419990 CCACGTGGGAAATCAGCATCTA 60.420 50.000 27.57 0.00 40.01 1.98
1524 1967 1.971167 GCCACGTGGGAAATCAGCA 60.971 57.895 34.58 0.00 40.01 4.41
1525 1968 1.926511 CTGCCACGTGGGAAATCAGC 61.927 60.000 34.58 18.26 40.01 4.26
1526 1969 1.926511 GCTGCCACGTGGGAAATCAG 61.927 60.000 34.58 29.60 40.01 2.90
1535 1978 1.996786 GATCCAATGGCTGCCACGTG 61.997 60.000 25.99 23.31 35.80 4.49
1585 2028 2.897271 TGTGGGCAAGACAATATGGT 57.103 45.000 0.00 0.00 0.00 3.55
1602 2045 4.406456 TCCTCTGCCACATTTGTAATTGT 58.594 39.130 0.00 0.00 0.00 2.71
1605 2048 7.062322 TGATATTCCTCTGCCACATTTGTAAT 58.938 34.615 0.00 0.00 0.00 1.89
1678 2121 1.992557 AGGGAGCCCAAGAATTGTACA 59.007 47.619 8.53 0.00 46.99 2.90
1717 2160 5.457140 CAGTATATTTCTCTCGTCTGCCTC 58.543 45.833 0.00 0.00 0.00 4.70
1727 2170 5.608437 TCAAGGCATCCCAGTATATTTCTCT 59.392 40.000 0.00 0.00 0.00 3.10
1787 2230 2.119801 AAGCTGAACCACATAGGCAG 57.880 50.000 0.00 0.00 43.14 4.85
1795 2238 3.585862 TCATCGACTTAAGCTGAACCAC 58.414 45.455 1.29 0.00 0.00 4.16
1803 2246 5.502153 TCCTAGACTTCATCGACTTAAGC 57.498 43.478 1.29 0.00 0.00 3.09
1863 2306 6.660949 CACCTGGAGGATAGAAACTTTTGAAT 59.339 38.462 0.00 0.00 38.94 2.57
1869 2312 6.394345 AAATCACCTGGAGGATAGAAACTT 57.606 37.500 0.00 0.00 38.94 2.66
2055 2517 9.976511 AAGCATGAAGACAAATATATTGAATGG 57.023 29.630 0.00 0.00 0.00 3.16
2107 2585 8.055279 TGATAACAGAAAAGAAAGCCATAAGG 57.945 34.615 0.00 0.00 38.23 2.69
2133 2615 8.263940 TGCAGGTCAAAGACAACTATATTAAC 57.736 34.615 0.00 0.00 33.68 2.01
2135 2617 8.100791 ACTTGCAGGTCAAAGACAACTATATTA 58.899 33.333 0.00 0.00 33.68 0.98
2152 2832 3.386726 TGTTACACTAGTCACTTGCAGGT 59.613 43.478 0.00 0.00 0.00 4.00
2188 3071 7.147312 CCTGATTAGAGACAACAAATGCAAAA 58.853 34.615 0.00 0.00 0.00 2.44
2189 3072 6.680810 CCTGATTAGAGACAACAAATGCAAA 58.319 36.000 0.00 0.00 0.00 3.68
2190 3073 5.335897 GCCTGATTAGAGACAACAAATGCAA 60.336 40.000 0.00 0.00 0.00 4.08
2191 3074 4.156556 GCCTGATTAGAGACAACAAATGCA 59.843 41.667 0.00 0.00 0.00 3.96
2255 3138 7.647715 ACATGCAAAAACTCATAAACACTACAC 59.352 33.333 0.00 0.00 0.00 2.90
2256 3139 7.711846 ACATGCAAAAACTCATAAACACTACA 58.288 30.769 0.00 0.00 0.00 2.74
2275 3158 3.380004 AGAAGACAAAACGGAAACATGCA 59.620 39.130 0.00 0.00 0.00 3.96
2285 3168 6.060028 TCCTCATTTCAAGAAGACAAAACG 57.940 37.500 0.00 0.00 0.00 3.60
2286 3169 6.914757 CACTCCTCATTTCAAGAAGACAAAAC 59.085 38.462 0.00 0.00 0.00 2.43
2348 3231 3.050703 ACGCCTTGTCATCGCTTAG 57.949 52.632 0.00 0.00 0.00 2.18
2358 3267 2.665185 GCAGGTTCGACGCCTTGT 60.665 61.111 5.07 0.00 33.31 3.16
3143 4108 1.357137 TCTGCATCACTACAACCCCA 58.643 50.000 0.00 0.00 0.00 4.96
3215 4180 9.569122 TCCATAGCTTTAAACTTTCTAGTGTTT 57.431 29.630 0.00 12.83 39.37 2.83
3296 4261 5.441718 AGGCCTCAAATCATCTTCTGTAA 57.558 39.130 0.00 0.00 0.00 2.41
3558 4533 9.937175 GCCTACAATTTAACTCATTAACTCATC 57.063 33.333 0.00 0.00 29.77 2.92
3559 4534 8.903820 GGCCTACAATTTAACTCATTAACTCAT 58.096 33.333 0.00 0.00 29.77 2.90
3560 4535 7.338449 GGGCCTACAATTTAACTCATTAACTCA 59.662 37.037 0.84 0.00 29.77 3.41
3561 4536 7.556635 AGGGCCTACAATTTAACTCATTAACTC 59.443 37.037 2.82 0.00 29.77 3.01
3562 4537 7.339466 CAGGGCCTACAATTTAACTCATTAACT 59.661 37.037 5.28 0.00 29.77 2.24
3563 4538 7.122204 ACAGGGCCTACAATTTAACTCATTAAC 59.878 37.037 5.28 0.00 29.77 2.01
3565 4540 6.727394 ACAGGGCCTACAATTTAACTCATTA 58.273 36.000 5.28 0.00 0.00 1.90
3572 4547 4.291249 AGGAAGACAGGGCCTACAATTTAA 59.709 41.667 5.28 0.00 0.00 1.52
3579 4554 1.909986 AGAAAGGAAGACAGGGCCTAC 59.090 52.381 5.28 3.38 0.00 3.18
3719 4720 8.671921 AGAGAACATGCTCTTGTATTTATGTTG 58.328 33.333 0.00 0.00 42.41 3.33
3777 4792 4.142609 TGGATATGAGAAGGCAACAGTC 57.857 45.455 0.00 0.00 41.41 3.51
3844 4860 0.968901 ACCAGCAATGGATGTGCCTG 60.969 55.000 0.31 0.00 43.27 4.85
3894 4915 4.956700 TCAAACCAAACAATTACCCTGTGA 59.043 37.500 0.00 0.00 0.00 3.58
3903 4924 9.044150 CACATTAGAACATCAAACCAAACAATT 57.956 29.630 0.00 0.00 0.00 2.32
4011 5045 1.814527 CTACCCACACTAGACGCCC 59.185 63.158 0.00 0.00 0.00 6.13
4016 5050 3.028850 GGTACATGCTACCCACACTAGA 58.971 50.000 11.37 0.00 0.00 2.43
4112 5151 8.593492 AAAAAGAGCCAATTTTTACTTAGCAG 57.407 30.769 2.93 0.00 37.91 4.24
4135 5175 7.838884 TCTGCATATCATTTGTGATCCAAAAA 58.161 30.769 11.70 1.38 45.72 1.94
4146 5187 7.709182 ACATTTGGACAATCTGCATATCATTTG 59.291 33.333 0.00 0.00 0.00 2.32
4163 5206 4.697352 ACTCTCAGCATACAACATTTGGAC 59.303 41.667 0.00 0.00 34.12 4.02
4180 5223 5.186021 CAGCTAAACCTAAGGAGAACTCTCA 59.814 44.000 8.91 0.00 44.60 3.27
4181 5224 5.186215 ACAGCTAAACCTAAGGAGAACTCTC 59.814 44.000 0.00 0.00 42.14 3.20
4229 5272 7.937942 TGTAGTAACAAAATTGGCTACTACCAA 59.062 33.333 25.57 15.87 43.93 3.67
4230 5273 7.451732 TGTAGTAACAAAATTGGCTACTACCA 58.548 34.615 25.57 18.16 43.93 3.25
4231 5274 7.910441 TGTAGTAACAAAATTGGCTACTACC 57.090 36.000 25.57 16.88 43.93 3.18
4316 5366 9.838339 ATGTCCTAGGAATATCAACAAAGTAAG 57.162 33.333 14.65 0.00 0.00 2.34
4358 5414 7.365652 CCACCTCCTAAAAAGGAAGAGCTATAA 60.366 40.741 0.00 0.00 37.55 0.98
4379 5444 5.030820 GAGCTATATACAATACCCCCACCT 58.969 45.833 0.00 0.00 0.00 4.00
4390 5456 9.494055 AGCCATATAAGGAAGAGCTATATACAA 57.506 33.333 0.00 0.00 0.00 2.41
4406 5485 7.273712 ACTCATGATCAGCATAGCCATATAAG 58.726 38.462 0.09 0.00 34.82 1.73
4411 5490 4.368565 AACTCATGATCAGCATAGCCAT 57.631 40.909 0.09 0.00 34.82 4.40
4413 5492 3.881688 ACAAACTCATGATCAGCATAGCC 59.118 43.478 0.09 0.00 34.82 3.93
4448 5556 6.961359 TGATACGGACAAAATCTAACAGTG 57.039 37.500 0.00 0.00 0.00 3.66
4472 5582 9.244799 CGCTAATCTGTTACTAACATGATAACA 57.755 33.333 0.00 7.89 41.26 2.41
4473 5583 8.215132 GCGCTAATCTGTTACTAACATGATAAC 58.785 37.037 0.00 3.59 41.26 1.89
4474 5584 8.141909 AGCGCTAATCTGTTACTAACATGATAA 58.858 33.333 8.99 0.00 41.26 1.75
4517 5724 0.039326 ATCTGCAGCAGCCCTTCTTT 59.961 50.000 18.43 0.00 41.13 2.52
4571 5778 3.554524 CATCTAAACACTGCCAACAACG 58.445 45.455 0.00 0.00 0.00 4.10
4577 5784 4.760530 AGATAGCATCTAAACACTGCCA 57.239 40.909 0.00 0.00 38.00 4.92
4603 5810 8.804204 GCTAGACTAGGGCAGAATAATAAGTTA 58.196 37.037 11.48 0.00 0.00 2.24
4610 5817 3.923648 TGGCTAGACTAGGGCAGAATAA 58.076 45.455 11.48 0.00 34.08 1.40
4613 5820 2.042464 CATGGCTAGACTAGGGCAGAA 58.958 52.381 11.48 0.00 41.10 3.02
4614 5821 1.062886 ACATGGCTAGACTAGGGCAGA 60.063 52.381 11.48 0.00 41.10 4.26
4615 5822 1.342819 GACATGGCTAGACTAGGGCAG 59.657 57.143 11.48 7.24 41.10 4.85
4620 5827 5.373222 ACACTAGAGACATGGCTAGACTAG 58.627 45.833 17.33 17.33 37.96 2.57
4632 5839 5.531122 AACAACTTGCTACACTAGAGACA 57.469 39.130 0.00 0.00 0.00 3.41
4653 5864 8.909423 ATTCCCTGGATTTAGGTATTCAAAAA 57.091 30.769 0.00 0.00 36.02 1.94
4666 5877 4.711846 GGTAAGCTGAAATTCCCTGGATTT 59.288 41.667 0.00 0.00 0.00 2.17
4689 5900 6.949352 AATCCAACTTGATACAATGCTAGG 57.051 37.500 0.00 0.00 0.00 3.02
4690 5901 7.128331 CGAAATCCAACTTGATACAATGCTAG 58.872 38.462 0.00 0.00 0.00 3.42
4721 5937 6.256757 TGCACAAACACCTAACAAAAATAAGC 59.743 34.615 0.00 0.00 0.00 3.09
4725 5941 5.526846 CCATGCACAAACACCTAACAAAAAT 59.473 36.000 0.00 0.00 0.00 1.82
4746 5962 8.484214 TCATAGATAAACAGAAGAGCTACCAT 57.516 34.615 0.00 0.00 0.00 3.55
4763 5983 6.776116 ACACGGGACTGAAACTATCATAGATA 59.224 38.462 0.00 0.00 37.44 1.98
4765 5985 4.954202 ACACGGGACTGAAACTATCATAGA 59.046 41.667 0.00 0.00 37.44 1.98
4767 5987 6.548251 TGATACACGGGACTGAAACTATCATA 59.452 38.462 0.00 0.00 37.44 2.15
4835 6058 9.049523 CAGCTAAGAAAATAGACATGCTTATCA 57.950 33.333 0.00 0.00 0.00 2.15
4838 6061 9.884636 TTACAGCTAAGAAAATAGACATGCTTA 57.115 29.630 0.00 0.00 0.00 3.09
4857 6080 6.661377 TCACTCTCAGACTAAGAATTACAGCT 59.339 38.462 0.00 0.00 0.00 4.24
4858 6081 6.857956 TCACTCTCAGACTAAGAATTACAGC 58.142 40.000 0.00 0.00 0.00 4.40
4859 6082 7.967854 CACTCACTCTCAGACTAAGAATTACAG 59.032 40.741 0.00 0.00 0.00 2.74
4860 6083 7.665974 TCACTCACTCTCAGACTAAGAATTACA 59.334 37.037 0.00 0.00 0.00 2.41
4861 6084 8.046294 TCACTCACTCTCAGACTAAGAATTAC 57.954 38.462 0.00 0.00 0.00 1.89
4862 6085 7.338196 CCTCACTCACTCTCAGACTAAGAATTA 59.662 40.741 0.00 0.00 0.00 1.40
4863 6086 6.152661 CCTCACTCACTCTCAGACTAAGAATT 59.847 42.308 0.00 0.00 0.00 2.17
4864 6087 5.652014 CCTCACTCACTCTCAGACTAAGAAT 59.348 44.000 0.00 0.00 0.00 2.40
4865 6088 5.007034 CCTCACTCACTCTCAGACTAAGAA 58.993 45.833 0.00 0.00 0.00 2.52
4866 6089 4.042311 ACCTCACTCACTCTCAGACTAAGA 59.958 45.833 0.00 0.00 0.00 2.10
4867 6090 4.331968 ACCTCACTCACTCTCAGACTAAG 58.668 47.826 0.00 0.00 0.00 2.18
4868 6091 4.374689 ACCTCACTCACTCTCAGACTAA 57.625 45.455 0.00 0.00 0.00 2.24
4869 6092 4.075682 CAACCTCACTCACTCTCAGACTA 58.924 47.826 0.00 0.00 0.00 2.59
4870 6093 2.890311 CAACCTCACTCACTCTCAGACT 59.110 50.000 0.00 0.00 0.00 3.24
4871 6094 2.609244 GCAACCTCACTCACTCTCAGAC 60.609 54.545 0.00 0.00 0.00 3.51
4872 6095 1.615883 GCAACCTCACTCACTCTCAGA 59.384 52.381 0.00 0.00 0.00 3.27
4873 6096 1.342496 TGCAACCTCACTCACTCTCAG 59.658 52.381 0.00 0.00 0.00 3.35
4874 6097 1.413118 TGCAACCTCACTCACTCTCA 58.587 50.000 0.00 0.00 0.00 3.27
4875 6098 2.233431 AGATGCAACCTCACTCACTCTC 59.767 50.000 0.00 0.00 0.00 3.20
4876 6099 2.255406 AGATGCAACCTCACTCACTCT 58.745 47.619 0.00 0.00 0.00 3.24
4877 6100 2.758736 AGATGCAACCTCACTCACTC 57.241 50.000 0.00 0.00 0.00 3.51
4878 6101 4.833478 ATAAGATGCAACCTCACTCACT 57.167 40.909 0.00 0.00 0.00 3.41
4879 6102 5.182001 ACAAATAAGATGCAACCTCACTCAC 59.818 40.000 0.00 0.00 0.00 3.51
4880 6103 5.316167 ACAAATAAGATGCAACCTCACTCA 58.684 37.500 0.00 0.00 0.00 3.41
4881 6104 5.886960 ACAAATAAGATGCAACCTCACTC 57.113 39.130 0.00 0.00 0.00 3.51
4882 6105 7.067494 GGATTACAAATAAGATGCAACCTCACT 59.933 37.037 0.00 0.00 0.00 3.41
4883 6106 7.067494 AGGATTACAAATAAGATGCAACCTCAC 59.933 37.037 0.00 0.00 0.00 3.51
4884 6107 7.118723 AGGATTACAAATAAGATGCAACCTCA 58.881 34.615 0.00 0.00 0.00 3.86
4885 6108 7.573968 AGGATTACAAATAAGATGCAACCTC 57.426 36.000 0.00 0.00 0.00 3.85
4886 6109 7.836183 AGAAGGATTACAAATAAGATGCAACCT 59.164 33.333 0.00 0.00 0.00 3.50
4887 6110 8.000780 AGAAGGATTACAAATAAGATGCAACC 57.999 34.615 0.00 0.00 0.00 3.77
4888 6111 8.897752 AGAGAAGGATTACAAATAAGATGCAAC 58.102 33.333 0.00 0.00 0.00 4.17
4889 6112 8.896744 CAGAGAAGGATTACAAATAAGATGCAA 58.103 33.333 0.00 0.00 0.00 4.08
4890 6113 7.012704 GCAGAGAAGGATTACAAATAAGATGCA 59.987 37.037 0.00 0.00 0.00 3.96
4891 6114 7.012704 TGCAGAGAAGGATTACAAATAAGATGC 59.987 37.037 0.00 0.00 0.00 3.91
4892 6115 8.442632 TGCAGAGAAGGATTACAAATAAGATG 57.557 34.615 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.