Multiple sequence alignment - TraesCS3D01G061200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G061200 chr3D 100.000 5265 0 0 1 5265 26588045 26582781 0.000000e+00 9723
1 TraesCS3D01G061200 chr3D 89.451 1659 136 15 3003 4645 26570832 26572467 0.000000e+00 2058
2 TraesCS3D01G061200 chr3D 82.581 953 138 13 3862 4807 6159561 6160492 0.000000e+00 815
3 TraesCS3D01G061200 chr3D 99.505 202 0 1 1 202 26570558 26570758 3.000000e-97 366
4 TraesCS3D01G061200 chr3A 93.177 4353 221 33 461 4775 36663122 36658808 0.000000e+00 6324
5 TraesCS3D01G061200 chr3A 83.852 836 114 10 3864 4689 14770740 14769916 0.000000e+00 776
6 TraesCS3D01G061200 chr3A 84.358 179 22 4 5092 5265 709375783 709375606 2.520000e-38 171
7 TraesCS3D01G061200 chr3A 80.000 230 26 4 25 238 36663492 36663267 9.130000e-33 152
8 TraesCS3D01G061200 chr3B 95.396 3866 146 13 581 4436 44787897 44784054 0.000000e+00 6124
9 TraesCS3D01G061200 chr3B 96.211 1003 33 2 1566 2566 44761039 44762038 0.000000e+00 1637
10 TraesCS3D01G061200 chr3B 85.911 653 75 11 4154 4796 44765811 44766456 0.000000e+00 680
11 TraesCS3D01G061200 chr3B 96.522 345 9 1 4924 5265 44784057 44783713 7.650000e-158 568
12 TraesCS3D01G061200 chr3B 87.221 493 36 11 917 1401 44760570 44761043 2.160000e-148 536
13 TraesCS3D01G061200 chr3B 97.030 101 3 0 233 333 773734432 773734332 2.520000e-38 171
14 TraesCS3D01G061200 chr3B 83.240 179 24 4 5092 5265 764375432 764375609 5.460000e-35 159
15 TraesCS3D01G061200 chr6B 84.398 3192 464 29 1010 4183 64689674 64686499 0.000000e+00 3105
16 TraesCS3D01G061200 chr6B 83.140 3191 501 31 1007 4177 65090841 65087668 0.000000e+00 2878
17 TraesCS3D01G061200 chr5D 84.219 3200 456 34 996 4177 369018867 369022035 0.000000e+00 3066
18 TraesCS3D01G061200 chr2B 84.267 3178 454 39 1024 4177 734396010 734399165 0.000000e+00 3057
19 TraesCS3D01G061200 chr2B 94.444 108 5 1 232 338 172750077 172750184 1.170000e-36 165
20 TraesCS3D01G061200 chr5B 84.529 3109 453 22 1080 4177 35548886 35545795 0.000000e+00 3051
21 TraesCS3D01G061200 chr4A 83.559 3169 493 23 1024 4177 657201004 657204159 0.000000e+00 2940
22 TraesCS3D01G061200 chr4A 82.340 3171 517 33 1024 4177 730947638 730950782 0.000000e+00 2713
23 TraesCS3D01G061200 chr7A 81.981 3130 528 28 1060 4169 625913081 625909968 0.000000e+00 2623
24 TraesCS3D01G061200 chrUn 83.715 2751 412 22 1451 4177 94836791 94839529 0.000000e+00 2566
25 TraesCS3D01G061200 chr2D 98.000 100 2 0 234 333 468096945 468096846 1.950000e-39 174
26 TraesCS3D01G061200 chr6A 97.959 98 2 0 236 333 23355077 23355174 2.520000e-38 171
27 TraesCS3D01G061200 chr1D 96.970 99 3 0 236 334 422309116 422309018 3.260000e-37 167
28 TraesCS3D01G061200 chr7D 95.192 104 5 0 231 334 617181658 617181761 1.170000e-36 165
29 TraesCS3D01G061200 chr7D 93.578 109 5 2 227 334 60439702 60439595 1.520000e-35 161
30 TraesCS3D01G061200 chr1A 95.192 104 5 0 237 340 12578141 12578038 1.170000e-36 165
31 TraesCS3D01G061200 chr4B 92.920 113 7 1 223 335 666597890 666598001 4.220000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G061200 chr3D 26582781 26588045 5264 True 9723 9723 100.0000 1 5265 1 chr3D.!!$R1 5264
1 TraesCS3D01G061200 chr3D 26570558 26572467 1909 False 1212 2058 94.4780 1 4645 2 chr3D.!!$F2 4644
2 TraesCS3D01G061200 chr3D 6159561 6160492 931 False 815 815 82.5810 3862 4807 1 chr3D.!!$F1 945
3 TraesCS3D01G061200 chr3A 36658808 36663492 4684 True 3238 6324 86.5885 25 4775 2 chr3A.!!$R3 4750
4 TraesCS3D01G061200 chr3A 14769916 14770740 824 True 776 776 83.8520 3864 4689 1 chr3A.!!$R1 825
5 TraesCS3D01G061200 chr3B 44783713 44787897 4184 True 3346 6124 95.9590 581 5265 2 chr3B.!!$R2 4684
6 TraesCS3D01G061200 chr3B 44760570 44766456 5886 False 951 1637 89.7810 917 4796 3 chr3B.!!$F2 3879
7 TraesCS3D01G061200 chr6B 64686499 64689674 3175 True 3105 3105 84.3980 1010 4183 1 chr6B.!!$R1 3173
8 TraesCS3D01G061200 chr6B 65087668 65090841 3173 True 2878 2878 83.1400 1007 4177 1 chr6B.!!$R2 3170
9 TraesCS3D01G061200 chr5D 369018867 369022035 3168 False 3066 3066 84.2190 996 4177 1 chr5D.!!$F1 3181
10 TraesCS3D01G061200 chr2B 734396010 734399165 3155 False 3057 3057 84.2670 1024 4177 1 chr2B.!!$F2 3153
11 TraesCS3D01G061200 chr5B 35545795 35548886 3091 True 3051 3051 84.5290 1080 4177 1 chr5B.!!$R1 3097
12 TraesCS3D01G061200 chr4A 657201004 657204159 3155 False 2940 2940 83.5590 1024 4177 1 chr4A.!!$F1 3153
13 TraesCS3D01G061200 chr4A 730947638 730950782 3144 False 2713 2713 82.3400 1024 4177 1 chr4A.!!$F2 3153
14 TraesCS3D01G061200 chr7A 625909968 625913081 3113 True 2623 2623 81.9810 1060 4169 1 chr7A.!!$R1 3109
15 TraesCS3D01G061200 chrUn 94836791 94839529 2738 False 2566 2566 83.7150 1451 4177 1 chrUn.!!$F1 2726

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
452 480 0.106708 CCCTGTCCACACCATATCCG 59.893 60.000 0.0 0.0 0.00 4.18 F
544 605 0.394899 CCCCATCTTCTTCCAGGTGC 60.395 60.000 0.0 0.0 0.00 5.01 F
1812 1911 0.469892 AAACTCTTGCCTTGGGTGGG 60.470 55.000 0.0 0.0 0.00 4.61 F
1900 1999 0.817654 GCAGAATGGGTTTAGTGGGC 59.182 55.000 0.0 0.0 35.86 5.36 F
3894 4038 2.022195 AGTCTTGGCATATTGCTGCTG 58.978 47.619 0.0 0.0 44.28 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1900 1999 2.195389 CCAATGTGGGAGGCACATG 58.805 57.895 0.00 0.0 41.85 3.21 R
2655 2766 6.653989 CCCCTTTATATTCTTCAGTGACTGT 58.346 40.000 12.93 0.0 32.61 3.55 R
2785 2896 3.200958 ACCTACTGGTATTGACCCTGT 57.799 47.619 0.00 0.0 46.43 4.00 R
3988 4132 2.481441 TGTTGGGTCAGCTATCTCCAT 58.519 47.619 0.00 0.0 0.00 3.41 R
4812 7811 0.032615 CCTCCTGTACTCCTGCTCCT 60.033 60.000 0.00 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
208 225 1.135460 GCAGCAGCAGGAGTTTGAATC 60.135 52.381 0.00 0.00 41.58 2.52
238 255 5.523916 TCACAGAGTCAACAAAAGAAGCTAC 59.476 40.000 0.00 0.00 0.00 3.58
239 256 5.525378 CACAGAGTCAACAAAAGAAGCTACT 59.475 40.000 0.00 0.00 0.00 2.57
240 257 5.755861 ACAGAGTCAACAAAAGAAGCTACTC 59.244 40.000 0.00 0.00 33.86 2.59
242 259 4.390264 AGTCAACAAAAGAAGCTACTCCC 58.610 43.478 0.00 0.00 0.00 4.30
243 260 4.103311 AGTCAACAAAAGAAGCTACTCCCT 59.897 41.667 0.00 0.00 0.00 4.20
244 261 4.452795 GTCAACAAAAGAAGCTACTCCCTC 59.547 45.833 0.00 0.00 0.00 4.30
245 262 3.704800 ACAAAAGAAGCTACTCCCTCC 57.295 47.619 0.00 0.00 0.00 4.30
246 263 2.028020 ACAAAAGAAGCTACTCCCTCCG 60.028 50.000 0.00 0.00 0.00 4.63
247 264 1.939980 AAAGAAGCTACTCCCTCCGT 58.060 50.000 0.00 0.00 0.00 4.69
248 265 1.939980 AAGAAGCTACTCCCTCCGTT 58.060 50.000 0.00 0.00 0.00 4.44
249 266 1.476477 AGAAGCTACTCCCTCCGTTC 58.524 55.000 0.00 0.00 0.00 3.95
250 267 0.460722 GAAGCTACTCCCTCCGTTCC 59.539 60.000 0.00 0.00 0.00 3.62
251 268 0.252103 AAGCTACTCCCTCCGTTCCA 60.252 55.000 0.00 0.00 0.00 3.53
252 269 0.252103 AGCTACTCCCTCCGTTCCAA 60.252 55.000 0.00 0.00 0.00 3.53
253 270 0.611714 GCTACTCCCTCCGTTCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
254 271 1.002773 GCTACTCCCTCCGTTCCAAAA 59.997 52.381 0.00 0.00 0.00 2.44
255 272 2.355818 GCTACTCCCTCCGTTCCAAAAT 60.356 50.000 0.00 0.00 0.00 1.82
256 273 3.118519 GCTACTCCCTCCGTTCCAAAATA 60.119 47.826 0.00 0.00 0.00 1.40
257 274 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
258 275 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
259 276 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
260 277 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
261 278 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
262 279 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
263 280 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
264 281 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
265 282 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
266 283 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
267 284 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
268 285 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
269 286 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
270 287 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
271 288 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
272 289 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
273 290 9.983024 TTCCAAAATAGATGACCCAACTTTATA 57.017 29.630 0.00 0.00 0.00 0.98
274 291 9.403583 TCCAAAATAGATGACCCAACTTTATAC 57.596 33.333 0.00 0.00 0.00 1.47
275 292 9.408648 CCAAAATAGATGACCCAACTTTATACT 57.591 33.333 0.00 0.00 0.00 2.12
307 324 8.756486 AGTACAAAGTTAATACAAAGTTGGGT 57.244 30.769 0.00 0.00 0.00 4.51
308 325 8.843262 AGTACAAAGTTAATACAAAGTTGGGTC 58.157 33.333 0.00 0.00 0.00 4.46
309 326 7.648039 ACAAAGTTAATACAAAGTTGGGTCA 57.352 32.000 0.00 0.00 0.00 4.02
310 327 8.245195 ACAAAGTTAATACAAAGTTGGGTCAT 57.755 30.769 0.00 0.00 0.00 3.06
311 328 8.357402 ACAAAGTTAATACAAAGTTGGGTCATC 58.643 33.333 0.00 0.00 0.00 2.92
312 329 8.576442 CAAAGTTAATACAAAGTTGGGTCATCT 58.424 33.333 0.00 0.00 0.00 2.90
313 330 9.802039 AAAGTTAATACAAAGTTGGGTCATCTA 57.198 29.630 0.00 0.00 0.00 1.98
314 331 9.975218 AAGTTAATACAAAGTTGGGTCATCTAT 57.025 29.630 0.00 0.00 0.00 1.98
315 332 9.975218 AGTTAATACAAAGTTGGGTCATCTATT 57.025 29.630 0.00 0.00 0.00 1.73
321 338 8.934023 ACAAAGTTGGGTCATCTATTTTAGAA 57.066 30.769 0.00 0.00 38.50 2.10
322 339 8.793592 ACAAAGTTGGGTCATCTATTTTAGAAC 58.206 33.333 0.00 0.00 38.50 3.01
323 340 7.611213 AAGTTGGGTCATCTATTTTAGAACG 57.389 36.000 0.00 0.00 38.50 3.95
324 341 6.113411 AGTTGGGTCATCTATTTTAGAACGG 58.887 40.000 0.00 0.00 38.50 4.44
325 342 5.943349 TGGGTCATCTATTTTAGAACGGA 57.057 39.130 0.00 0.00 38.50 4.69
326 343 5.914033 TGGGTCATCTATTTTAGAACGGAG 58.086 41.667 0.00 0.00 38.50 4.63
327 344 5.163343 TGGGTCATCTATTTTAGAACGGAGG 60.163 44.000 0.00 0.00 38.50 4.30
328 345 5.298347 GGTCATCTATTTTAGAACGGAGGG 58.702 45.833 0.00 0.00 38.50 4.30
329 346 5.070047 GGTCATCTATTTTAGAACGGAGGGA 59.930 44.000 0.00 0.00 38.50 4.20
330 347 6.217294 GTCATCTATTTTAGAACGGAGGGAG 58.783 44.000 0.00 0.00 38.50 4.30
331 348 5.897824 TCATCTATTTTAGAACGGAGGGAGT 59.102 40.000 0.00 0.00 38.50 3.85
332 349 7.014038 GTCATCTATTTTAGAACGGAGGGAGTA 59.986 40.741 0.00 0.00 38.50 2.59
333 350 7.728981 TCATCTATTTTAGAACGGAGGGAGTAT 59.271 37.037 0.00 0.00 38.50 2.12
334 351 7.909485 TCTATTTTAGAACGGAGGGAGTATT 57.091 36.000 0.00 0.00 0.00 1.89
335 352 7.723324 TCTATTTTAGAACGGAGGGAGTATTG 58.277 38.462 0.00 0.00 0.00 1.90
336 353 5.750352 TTTTAGAACGGAGGGAGTATTGT 57.250 39.130 0.00 0.00 0.00 2.71
337 354 4.996788 TTAGAACGGAGGGAGTATTGTC 57.003 45.455 0.00 0.00 0.00 3.18
338 355 2.108970 AGAACGGAGGGAGTATTGTCC 58.891 52.381 0.00 0.00 35.64 4.02
339 356 1.829222 GAACGGAGGGAGTATTGTCCA 59.171 52.381 0.00 0.00 38.52 4.02
340 357 1.486211 ACGGAGGGAGTATTGTCCAG 58.514 55.000 0.00 0.00 38.52 3.86
341 358 1.273098 ACGGAGGGAGTATTGTCCAGT 60.273 52.381 0.00 0.00 38.52 4.00
342 359 1.137086 CGGAGGGAGTATTGTCCAGTG 59.863 57.143 0.00 0.00 38.52 3.66
343 360 2.188817 GGAGGGAGTATTGTCCAGTGT 58.811 52.381 0.00 0.00 38.52 3.55
344 361 2.093447 GGAGGGAGTATTGTCCAGTGTG 60.093 54.545 0.00 0.00 38.52 3.82
345 362 2.832129 GAGGGAGTATTGTCCAGTGTGA 59.168 50.000 0.00 0.00 38.52 3.58
346 363 2.567615 AGGGAGTATTGTCCAGTGTGAC 59.432 50.000 5.16 5.16 38.52 3.67
347 364 2.354805 GGGAGTATTGTCCAGTGTGACC 60.355 54.545 8.66 0.00 38.52 4.02
348 365 2.354805 GGAGTATTGTCCAGTGTGACCC 60.355 54.545 8.66 0.28 36.51 4.46
349 366 2.301870 GAGTATTGTCCAGTGTGACCCA 59.698 50.000 8.66 0.00 34.25 4.51
350 367 2.708861 AGTATTGTCCAGTGTGACCCAA 59.291 45.455 8.66 0.31 34.25 4.12
351 368 2.978156 ATTGTCCAGTGTGACCCAAT 57.022 45.000 8.66 2.19 34.25 3.16
352 369 4.534500 AGTATTGTCCAGTGTGACCCAATA 59.466 41.667 8.66 5.48 34.25 1.90
353 370 4.591321 ATTGTCCAGTGTGACCCAATAT 57.409 40.909 8.66 0.00 34.25 1.28
354 371 4.380843 TTGTCCAGTGTGACCCAATATT 57.619 40.909 8.66 0.00 34.25 1.28
355 372 5.506730 TTGTCCAGTGTGACCCAATATTA 57.493 39.130 8.66 0.00 34.25 0.98
358 375 4.275936 GTCCAGTGTGACCCAATATTATGC 59.724 45.833 0.00 0.00 0.00 3.14
383 400 6.092396 CAGAGATATTATAGCAGCAAGGCAAG 59.908 42.308 0.00 0.00 35.83 4.01
384 401 4.699257 AGATATTATAGCAGCAAGGCAAGC 59.301 41.667 0.00 0.00 35.83 4.01
405 422 1.821759 CACGCCAAGTGTGACCCAA 60.822 57.895 2.11 0.00 45.59 4.12
422 439 6.750039 GTGACCCAATATTAAAACGGAACATG 59.250 38.462 0.00 0.00 0.00 3.21
423 440 6.127591 TGACCCAATATTAAAACGGAACATGG 60.128 38.462 0.00 0.00 0.00 3.66
425 442 4.737765 CCAATATTAAAACGGAACATGGCG 59.262 41.667 0.00 0.00 0.00 5.69
426 443 5.336744 CAATATTAAAACGGAACATGGCGT 58.663 37.500 0.00 0.00 0.00 5.68
429 446 0.309612 AAAACGGAACATGGCGTCAC 59.690 50.000 0.00 0.00 0.00 3.67
430 447 1.512156 AAACGGAACATGGCGTCACC 61.512 55.000 0.00 0.00 39.84 4.02
432 449 2.047655 GGAACATGGCGTCACCGA 60.048 61.111 0.00 0.00 43.94 4.69
433 450 2.388232 GGAACATGGCGTCACCGAC 61.388 63.158 0.00 0.00 43.94 4.79
434 451 2.358247 AACATGGCGTCACCGACC 60.358 61.111 0.00 0.00 43.26 4.79
435 452 3.894547 AACATGGCGTCACCGACCC 62.895 63.158 0.00 0.00 43.26 4.46
436 453 4.082523 CATGGCGTCACCGACCCT 62.083 66.667 0.00 0.00 43.26 4.34
437 454 4.082523 ATGGCGTCACCGACCCTG 62.083 66.667 0.00 0.00 43.26 4.45
440 457 4.736896 GCGTCACCGACCCTGTCC 62.737 72.222 0.00 0.00 35.63 4.02
441 458 3.299977 CGTCACCGACCCTGTCCA 61.300 66.667 0.00 0.00 35.63 4.02
442 459 2.342648 GTCACCGACCCTGTCCAC 59.657 66.667 0.00 0.00 0.00 4.02
443 460 2.123208 TCACCGACCCTGTCCACA 60.123 61.111 0.00 0.00 0.00 4.17
452 480 0.106708 CCCTGTCCACACCATATCCG 59.893 60.000 0.00 0.00 0.00 4.18
453 481 0.106708 CCTGTCCACACCATATCCGG 59.893 60.000 0.00 0.00 0.00 5.14
464 520 2.238646 ACCATATCCGGCTGTTCTCAAA 59.761 45.455 0.00 0.00 0.00 2.69
466 522 2.024176 TATCCGGCTGTTCTCAAAGC 57.976 50.000 0.00 0.00 38.76 3.51
475 531 0.944386 GTTCTCAAAGCACGGAAGCA 59.056 50.000 0.00 0.00 36.85 3.91
482 538 1.446907 AAGCACGGAAGCAAGAGATG 58.553 50.000 0.00 0.00 36.85 2.90
489 545 3.900601 ACGGAAGCAAGAGATGGATAGAT 59.099 43.478 0.00 0.00 0.00 1.98
507 568 9.653287 TGGATAGATATAAATAAACCGAAGCAG 57.347 33.333 0.00 0.00 0.00 4.24
528 589 2.948315 GAGCATCTGAATTCTGAACCCC 59.052 50.000 17.62 7.63 0.00 4.95
535 596 4.537688 TCTGAATTCTGAACCCCATCTTCT 59.462 41.667 12.17 0.00 0.00 2.85
536 597 5.014544 TCTGAATTCTGAACCCCATCTTCTT 59.985 40.000 12.17 0.00 0.00 2.52
537 598 5.256474 TGAATTCTGAACCCCATCTTCTTC 58.744 41.667 7.05 0.00 0.00 2.87
538 599 3.721087 TTCTGAACCCCATCTTCTTCC 57.279 47.619 0.00 0.00 0.00 3.46
539 600 2.631384 TCTGAACCCCATCTTCTTCCA 58.369 47.619 0.00 0.00 0.00 3.53
540 601 2.573462 TCTGAACCCCATCTTCTTCCAG 59.427 50.000 0.00 0.00 0.00 3.86
541 602 1.635487 TGAACCCCATCTTCTTCCAGG 59.365 52.381 0.00 0.00 0.00 4.45
542 603 1.636003 GAACCCCATCTTCTTCCAGGT 59.364 52.381 0.00 0.00 0.00 4.00
543 604 0.995024 ACCCCATCTTCTTCCAGGTG 59.005 55.000 0.00 0.00 0.00 4.00
544 605 0.394899 CCCCATCTTCTTCCAGGTGC 60.395 60.000 0.00 0.00 0.00 5.01
545 606 0.622665 CCCATCTTCTTCCAGGTGCT 59.377 55.000 0.00 0.00 0.00 4.40
546 607 1.681166 CCCATCTTCTTCCAGGTGCTG 60.681 57.143 0.00 0.00 0.00 4.41
559 634 3.367292 CCAGGTGCTGCGTTTTGATTTAT 60.367 43.478 0.00 0.00 0.00 1.40
564 639 4.790140 GTGCTGCGTTTTGATTTATGAGAG 59.210 41.667 0.00 0.00 0.00 3.20
710 789 4.722700 ATCCCTGTGTGGCACCGC 62.723 66.667 16.26 8.74 32.73 5.68
713 792 2.742372 CCTGTGTGGCACCGCTAC 60.742 66.667 16.26 7.04 40.44 3.58
731 810 4.400109 GCTGTCGTCGGCTCGTCA 62.400 66.667 6.20 0.20 42.20 4.35
758 838 1.142185 CGCTGATGATTCGACGTGCT 61.142 55.000 0.00 0.00 0.00 4.40
775 855 0.798776 GCTGATGGTTGTCAACTCCG 59.201 55.000 15.17 4.24 0.00 4.63
787 867 1.002366 CAACTCCGGAGAAGCAATCG 58.998 55.000 37.69 9.39 0.00 3.34
803 883 3.044986 CAATCGTGCAGGTTTGTCAAAG 58.955 45.455 17.89 0.00 0.00 2.77
805 885 2.571212 TCGTGCAGGTTTGTCAAAGAT 58.429 42.857 6.26 0.00 0.00 2.40
842 923 3.245016 ACATCATTCCTGAAAGTCAGCCA 60.245 43.478 0.00 0.00 42.98 4.75
876 957 5.334182 GGAGCTGTTGAAGTTTTAGCACTAC 60.334 44.000 0.00 0.00 36.87 2.73
877 958 4.515567 AGCTGTTGAAGTTTTAGCACTACC 59.484 41.667 0.00 0.00 36.87 3.18
903 984 9.520204 CCTTTCAGACGAATAAATAAATGCAAT 57.480 29.630 0.00 0.00 0.00 3.56
941 1023 4.501571 GCACGTATGACCAGATCAGGTTAT 60.502 45.833 17.06 17.06 43.38 1.89
942 1024 5.278808 GCACGTATGACCAGATCAGGTTATA 60.279 44.000 15.27 15.27 43.38 0.98
943 1025 6.572509 GCACGTATGACCAGATCAGGTTATAT 60.573 42.308 20.19 13.53 43.38 0.86
944 1026 7.030165 CACGTATGACCAGATCAGGTTATATC 58.970 42.308 20.19 14.16 43.38 1.63
983 1065 4.696479 ACTGCTATTTGGAGACCCATAG 57.304 45.455 0.00 0.00 43.12 2.23
990 1072 3.713826 TTGGAGACCCATAGTTGGAAC 57.286 47.619 0.00 0.00 46.92 3.62
993 1075 2.355818 GGAGACCCATAGTTGGAACCAC 60.356 54.545 0.00 0.00 46.92 4.16
1195 1289 4.624364 TGACGTGCAGCCACTGGG 62.624 66.667 0.00 0.00 39.86 4.45
1338 1435 1.221840 GATTCCAGCAAGCCTCGGA 59.778 57.895 0.00 0.00 0.00 4.55
1344 1441 4.143333 GCAAGCCTCGGACGCCTA 62.143 66.667 0.00 0.00 0.00 3.93
1812 1911 0.469892 AAACTCTTGCCTTGGGTGGG 60.470 55.000 0.00 0.00 0.00 4.61
1842 1941 3.231298 GGAACCATCCCCTCCTCG 58.769 66.667 0.00 0.00 40.10 4.63
1900 1999 0.817654 GCAGAATGGGTTTAGTGGGC 59.182 55.000 0.00 0.00 35.86 5.36
2010 2116 3.118992 GGGAATTCATCACTTCTTTGGCC 60.119 47.826 7.93 0.00 0.00 5.36
2182 2288 3.074594 GTTGGTCTCAACGTGGTGT 57.925 52.632 0.00 0.00 42.99 4.16
2655 2766 2.274542 TCCTTTGAGGGAAGCATACCA 58.725 47.619 0.00 0.00 35.59 3.25
2785 2896 6.104146 TGTACCTAGCACACAATAACTTGA 57.896 37.500 0.00 0.00 36.20 3.02
3091 3223 4.469657 TGTTTGGATACTTTGCAAGAGGT 58.530 39.130 0.00 3.24 36.96 3.85
3894 4038 2.022195 AGTCTTGGCATATTGCTGCTG 58.978 47.619 0.00 0.00 44.28 4.41
3988 4132 1.423584 TGCTCTTCCTGACAGAACCA 58.576 50.000 3.32 0.00 0.00 3.67
4029 4173 0.824109 TCTGGCTACATGGAGAACCG 59.176 55.000 9.87 0.00 39.42 4.44
4210 7192 3.686227 AGCATATTGGGGAACATGGAA 57.314 42.857 0.00 0.00 0.00 3.53
4224 7206 1.934410 TGGAACAAAAGGGGAGCCA 59.066 52.632 0.00 0.00 31.92 4.75
4325 7312 4.500477 CGGAGCTATTTTATTTGCAACTGC 59.500 41.667 0.00 0.00 42.50 4.40
4341 7329 6.611381 TGCAACTGCTCAGATAAATGTAAAC 58.389 36.000 3.60 0.00 42.66 2.01
4376 7364 5.188948 TGGTGTTCTACAATAGCACTATGGT 59.811 40.000 3.28 3.28 34.31 3.55
4425 7413 7.718272 TGGCTTCTCAAAAATTTCAAAGATG 57.282 32.000 0.00 0.00 0.00 2.90
4429 7417 9.992910 GCTTCTCAAAAATTTCAAAGATGTTTT 57.007 25.926 0.00 0.00 0.00 2.43
4449 7437 8.698973 TGTTTTAAACCACATCCTCAATCTAA 57.301 30.769 5.32 0.00 0.00 2.10
4477 7465 3.693578 TGGCAACATGAATTTATCGCTCA 59.306 39.130 0.00 0.00 46.17 4.26
4562 7557 1.728971 GCAGTACACAGTAGCAGCAAG 59.271 52.381 0.00 0.00 0.00 4.01
4563 7558 2.868044 GCAGTACACAGTAGCAGCAAGT 60.868 50.000 0.00 0.00 0.00 3.16
4572 7567 3.375299 CAGTAGCAGCAAGTAATTGACCC 59.625 47.826 7.18 0.00 0.00 4.46
4580 7575 7.013655 AGCAGCAAGTAATTGACCCTAATATTG 59.986 37.037 7.18 0.00 0.00 1.90
4593 7588 6.240894 ACCCTAATATTGCACATATCCAGTG 58.759 40.000 0.00 0.00 39.92 3.66
4603 7598 4.380761 GCACATATCCAGTGACAAATGCAA 60.381 41.667 0.00 0.00 39.30 4.08
4614 7609 8.557864 CCAGTGACAAATGCAAATATTTGAAAA 58.442 29.630 28.33 14.75 46.13 2.29
4621 7616 9.932699 CAAATGCAAATATTTGAAAACACAAGA 57.067 25.926 28.33 0.00 46.13 3.02
4644 7641 9.434420 AAGAAATTTGTCACAAAACAGAAATCA 57.566 25.926 7.14 0.00 0.00 2.57
4671 7668 8.496751 CAGACTAGAAATGCATCAGTATCATTG 58.503 37.037 0.00 0.00 31.53 2.82
4689 7686 6.317789 TCATTGAGTTTCCAAAAGCAGTAG 57.682 37.500 0.00 0.00 0.00 2.57
4707 7706 6.049149 GCAGTAGCATGTAATCCTTCTAACA 58.951 40.000 0.00 0.00 41.58 2.41
4710 7709 4.442706 AGCATGTAATCCTTCTAACACGG 58.557 43.478 0.00 0.00 0.00 4.94
4733 7732 4.833938 GGTGAACCCAAATTACCCAACTAA 59.166 41.667 0.00 0.00 0.00 2.24
4740 7739 8.812513 ACCCAAATTACCCAACTAAATACTAC 57.187 34.615 0.00 0.00 0.00 2.73
4778 7777 7.763985 TCAATTCTCATCAAGTACTCGCATTAA 59.236 33.333 0.00 0.00 0.00 1.40
4795 7794 9.383519 CTCGCATTAATACTCCAATATAACCAT 57.616 33.333 0.00 0.00 0.00 3.55
4807 7806 8.721133 TCCAATATAACCATAGTCTAAGCAGA 57.279 34.615 0.00 0.00 0.00 4.26
4808 7807 8.807118 TCCAATATAACCATAGTCTAAGCAGAG 58.193 37.037 0.00 0.00 0.00 3.35
4809 7808 8.589338 CCAATATAACCATAGTCTAAGCAGAGT 58.411 37.037 0.00 0.00 38.11 3.24
4810 7809 9.632807 CAATATAACCATAGTCTAAGCAGAGTC 57.367 37.037 0.00 0.00 35.92 3.36
4811 7810 4.640789 AACCATAGTCTAAGCAGAGTCG 57.359 45.455 0.00 0.00 35.92 4.18
4812 7811 3.887352 ACCATAGTCTAAGCAGAGTCGA 58.113 45.455 0.00 0.00 35.92 4.20
4813 7812 3.880490 ACCATAGTCTAAGCAGAGTCGAG 59.120 47.826 0.00 0.00 35.92 4.04
4814 7813 3.252215 CCATAGTCTAAGCAGAGTCGAGG 59.748 52.174 0.00 0.00 35.92 4.63
4815 7814 2.791347 AGTCTAAGCAGAGTCGAGGA 57.209 50.000 0.00 0.00 27.30 3.71
4816 7815 2.639065 AGTCTAAGCAGAGTCGAGGAG 58.361 52.381 0.00 0.00 27.30 3.69
4817 7816 1.064952 GTCTAAGCAGAGTCGAGGAGC 59.935 57.143 0.00 0.00 0.00 4.70
4818 7817 1.098869 CTAAGCAGAGTCGAGGAGCA 58.901 55.000 0.00 0.00 0.00 4.26
4819 7818 1.065401 CTAAGCAGAGTCGAGGAGCAG 59.935 57.143 0.00 0.00 0.00 4.24
4820 7819 1.603236 AAGCAGAGTCGAGGAGCAGG 61.603 60.000 0.00 0.00 0.00 4.85
4821 7820 2.049185 GCAGAGTCGAGGAGCAGGA 61.049 63.158 0.00 0.00 0.00 3.86
4822 7821 2.003658 GCAGAGTCGAGGAGCAGGAG 62.004 65.000 0.00 0.00 0.00 3.69
4823 7822 0.679640 CAGAGTCGAGGAGCAGGAGT 60.680 60.000 0.00 0.00 0.00 3.85
4824 7823 0.913205 AGAGTCGAGGAGCAGGAGTA 59.087 55.000 0.00 0.00 0.00 2.59
4825 7824 1.018910 GAGTCGAGGAGCAGGAGTAC 58.981 60.000 0.00 0.00 0.00 2.73
4826 7825 0.328592 AGTCGAGGAGCAGGAGTACA 59.671 55.000 0.00 0.00 0.00 2.90
4827 7826 0.736053 GTCGAGGAGCAGGAGTACAG 59.264 60.000 0.00 0.00 0.00 2.74
4828 7827 0.394488 TCGAGGAGCAGGAGTACAGG 60.394 60.000 0.00 0.00 0.00 4.00
4829 7828 0.394488 CGAGGAGCAGGAGTACAGGA 60.394 60.000 0.00 0.00 0.00 3.86
4830 7829 1.398692 GAGGAGCAGGAGTACAGGAG 58.601 60.000 0.00 0.00 0.00 3.69
4831 7830 0.032615 AGGAGCAGGAGTACAGGAGG 60.033 60.000 0.00 0.00 0.00 4.30
4832 7831 1.045911 GGAGCAGGAGTACAGGAGGG 61.046 65.000 0.00 0.00 0.00 4.30
4833 7832 1.681486 GAGCAGGAGTACAGGAGGGC 61.681 65.000 0.00 0.00 0.00 5.19
4834 7833 1.687493 GCAGGAGTACAGGAGGGCT 60.687 63.158 0.00 0.00 0.00 5.19
4835 7834 0.397254 GCAGGAGTACAGGAGGGCTA 60.397 60.000 0.00 0.00 0.00 3.93
4836 7835 1.698506 CAGGAGTACAGGAGGGCTAG 58.301 60.000 0.00 0.00 0.00 3.42
4837 7836 1.063567 CAGGAGTACAGGAGGGCTAGT 60.064 57.143 0.00 0.00 0.00 2.57
4838 7837 1.646977 AGGAGTACAGGAGGGCTAGTT 59.353 52.381 0.00 0.00 0.00 2.24
4839 7838 2.044630 AGGAGTACAGGAGGGCTAGTTT 59.955 50.000 0.00 0.00 0.00 2.66
4840 7839 3.271490 AGGAGTACAGGAGGGCTAGTTTA 59.729 47.826 0.00 0.00 0.00 2.01
4841 7840 4.028825 GGAGTACAGGAGGGCTAGTTTAA 58.971 47.826 0.00 0.00 0.00 1.52
4842 7841 4.099727 GGAGTACAGGAGGGCTAGTTTAAG 59.900 50.000 0.00 0.00 0.00 1.85
4843 7842 4.944177 AGTACAGGAGGGCTAGTTTAAGA 58.056 43.478 0.00 0.00 0.00 2.10
4844 7843 5.530243 AGTACAGGAGGGCTAGTTTAAGAT 58.470 41.667 0.00 0.00 0.00 2.40
4845 7844 5.965091 AGTACAGGAGGGCTAGTTTAAGATT 59.035 40.000 0.00 0.00 0.00 2.40
4846 7845 5.104259 ACAGGAGGGCTAGTTTAAGATTG 57.896 43.478 0.00 0.00 0.00 2.67
4847 7846 4.783227 ACAGGAGGGCTAGTTTAAGATTGA 59.217 41.667 0.00 0.00 0.00 2.57
4848 7847 5.430089 ACAGGAGGGCTAGTTTAAGATTGAT 59.570 40.000 0.00 0.00 0.00 2.57
4849 7848 5.994668 CAGGAGGGCTAGTTTAAGATTGATC 59.005 44.000 0.00 0.00 0.00 2.92
4850 7849 5.072464 AGGAGGGCTAGTTTAAGATTGATCC 59.928 44.000 0.00 0.00 0.00 3.36
4851 7850 4.962155 AGGGCTAGTTTAAGATTGATCCG 58.038 43.478 0.00 0.00 0.00 4.18
4852 7851 3.498777 GGGCTAGTTTAAGATTGATCCGC 59.501 47.826 0.00 0.00 0.00 5.54
4853 7852 3.498777 GGCTAGTTTAAGATTGATCCGCC 59.501 47.826 0.00 0.00 0.00 6.13
4854 7853 4.381411 GCTAGTTTAAGATTGATCCGCCT 58.619 43.478 0.00 0.00 0.00 5.52
4855 7854 4.449405 GCTAGTTTAAGATTGATCCGCCTC 59.551 45.833 0.00 0.00 0.00 4.70
4856 7855 3.809905 AGTTTAAGATTGATCCGCCTCC 58.190 45.455 0.00 0.00 0.00 4.30
4857 7856 3.456277 AGTTTAAGATTGATCCGCCTCCT 59.544 43.478 0.00 0.00 0.00 3.69
4858 7857 3.475566 TTAAGATTGATCCGCCTCCTG 57.524 47.619 0.00 0.00 0.00 3.86
4859 7858 0.179034 AAGATTGATCCGCCTCCTGC 60.179 55.000 0.00 0.00 0.00 4.85
4860 7859 1.146930 GATTGATCCGCCTCCTGCA 59.853 57.895 0.00 0.00 41.33 4.41
4861 7860 0.464373 GATTGATCCGCCTCCTGCAA 60.464 55.000 0.00 0.00 41.33 4.08
4862 7861 0.465097 ATTGATCCGCCTCCTGCAAG 60.465 55.000 0.00 0.00 41.33 4.01
4879 7878 3.940209 CAAGGCCAATTGCTTACTGAA 57.060 42.857 5.01 0.00 40.92 3.02
4880 7879 4.460948 CAAGGCCAATTGCTTACTGAAT 57.539 40.909 5.01 0.00 40.92 2.57
4881 7880 4.427312 CAAGGCCAATTGCTTACTGAATC 58.573 43.478 5.01 0.00 40.92 2.52
4882 7881 3.026694 AGGCCAATTGCTTACTGAATCC 58.973 45.455 5.01 0.00 40.92 3.01
4883 7882 2.223572 GGCCAATTGCTTACTGAATCCG 60.224 50.000 0.00 0.00 40.92 4.18
4884 7883 2.796032 GCCAATTGCTTACTGAATCCGC 60.796 50.000 0.00 0.00 36.87 5.54
4885 7884 2.223572 CCAATTGCTTACTGAATCCGCC 60.224 50.000 0.00 0.00 0.00 6.13
4886 7885 1.680338 ATTGCTTACTGAATCCGCCC 58.320 50.000 0.00 0.00 0.00 6.13
4887 7886 0.326595 TTGCTTACTGAATCCGCCCA 59.673 50.000 0.00 0.00 0.00 5.36
4888 7887 0.326595 TGCTTACTGAATCCGCCCAA 59.673 50.000 0.00 0.00 0.00 4.12
4889 7888 0.733150 GCTTACTGAATCCGCCCAAC 59.267 55.000 0.00 0.00 0.00 3.77
4890 7889 1.379527 CTTACTGAATCCGCCCAACC 58.620 55.000 0.00 0.00 0.00 3.77
4891 7890 0.988832 TTACTGAATCCGCCCAACCT 59.011 50.000 0.00 0.00 0.00 3.50
4892 7891 0.988832 TACTGAATCCGCCCAACCTT 59.011 50.000 0.00 0.00 0.00 3.50
4893 7892 0.988832 ACTGAATCCGCCCAACCTTA 59.011 50.000 0.00 0.00 0.00 2.69
4894 7893 1.339727 ACTGAATCCGCCCAACCTTAC 60.340 52.381 0.00 0.00 0.00 2.34
4895 7894 0.693622 TGAATCCGCCCAACCTTACA 59.306 50.000 0.00 0.00 0.00 2.41
4896 7895 1.339631 TGAATCCGCCCAACCTTACAG 60.340 52.381 0.00 0.00 0.00 2.74
4897 7896 0.988832 AATCCGCCCAACCTTACAGA 59.011 50.000 0.00 0.00 0.00 3.41
4898 7897 0.988832 ATCCGCCCAACCTTACAGAA 59.011 50.000 0.00 0.00 0.00 3.02
4899 7898 0.035739 TCCGCCCAACCTTACAGAAC 59.964 55.000 0.00 0.00 0.00 3.01
4900 7899 0.250553 CCGCCCAACCTTACAGAACA 60.251 55.000 0.00 0.00 0.00 3.18
4901 7900 0.872388 CGCCCAACCTTACAGAACAC 59.128 55.000 0.00 0.00 0.00 3.32
4902 7901 1.542547 CGCCCAACCTTACAGAACACT 60.543 52.381 0.00 0.00 0.00 3.55
4903 7902 2.583143 GCCCAACCTTACAGAACACTT 58.417 47.619 0.00 0.00 0.00 3.16
4904 7903 2.293399 GCCCAACCTTACAGAACACTTG 59.707 50.000 0.00 0.00 0.00 3.16
4905 7904 3.815809 CCCAACCTTACAGAACACTTGA 58.184 45.455 0.00 0.00 0.00 3.02
4906 7905 4.398319 CCCAACCTTACAGAACACTTGAT 58.602 43.478 0.00 0.00 0.00 2.57
4907 7906 4.455877 CCCAACCTTACAGAACACTTGATC 59.544 45.833 0.00 0.00 0.00 2.92
4908 7907 5.063204 CCAACCTTACAGAACACTTGATCA 58.937 41.667 0.00 0.00 0.00 2.92
4909 7908 5.530915 CCAACCTTACAGAACACTTGATCAA 59.469 40.000 8.12 8.12 0.00 2.57
4910 7909 6.207417 CCAACCTTACAGAACACTTGATCAAT 59.793 38.462 8.96 0.00 0.00 2.57
4911 7910 6.808008 ACCTTACAGAACACTTGATCAATG 57.192 37.500 8.96 11.64 0.00 2.82
4912 7911 5.182001 ACCTTACAGAACACTTGATCAATGC 59.818 40.000 8.96 0.00 0.00 3.56
4913 7912 5.413833 CCTTACAGAACACTTGATCAATGCT 59.586 40.000 8.96 0.00 0.00 3.79
4914 7913 6.072286 CCTTACAGAACACTTGATCAATGCTT 60.072 38.462 8.96 0.07 0.00 3.91
4915 7914 5.779529 ACAGAACACTTGATCAATGCTTT 57.220 34.783 8.96 0.20 0.00 3.51
4916 7915 6.882610 ACAGAACACTTGATCAATGCTTTA 57.117 33.333 8.96 0.00 0.00 1.85
4917 7916 7.275888 ACAGAACACTTGATCAATGCTTTAA 57.724 32.000 8.96 0.00 0.00 1.52
4918 7917 7.141363 ACAGAACACTTGATCAATGCTTTAAC 58.859 34.615 8.96 0.00 0.00 2.01
4919 7918 7.013655 ACAGAACACTTGATCAATGCTTTAACT 59.986 33.333 8.96 0.00 0.00 2.24
4920 7919 7.325338 CAGAACACTTGATCAATGCTTTAACTG 59.675 37.037 8.96 7.80 0.00 3.16
4921 7920 5.464168 ACACTTGATCAATGCTTTAACTGC 58.536 37.500 8.96 0.00 0.00 4.40
4922 7921 4.860907 CACTTGATCAATGCTTTAACTGCC 59.139 41.667 8.96 0.00 0.00 4.85
4923 7922 4.523943 ACTTGATCAATGCTTTAACTGCCA 59.476 37.500 8.96 0.00 0.00 4.92
4924 7923 4.439305 TGATCAATGCTTTAACTGCCAC 57.561 40.909 0.00 0.00 0.00 5.01
4925 7924 3.193267 TGATCAATGCTTTAACTGCCACC 59.807 43.478 0.00 0.00 0.00 4.61
4926 7925 2.591923 TCAATGCTTTAACTGCCACCA 58.408 42.857 0.00 0.00 0.00 4.17
5048 8047 7.320399 ACTGGCTAACATTTATTTACAAAGGC 58.680 34.615 0.00 0.00 0.00 4.35
5099 8098 9.807649 AATTGCAGAATTATTTACCAGAATCAC 57.192 29.630 0.00 0.00 29.49 3.06
5123 8122 7.699391 CACCTTATCTCAACAGTTTAATGCATG 59.301 37.037 0.00 0.00 0.00 4.06
5185 8187 2.228582 TGGAAAACATTGTCTGGCATCG 59.771 45.455 0.00 0.00 0.00 3.84
5217 8219 7.194112 TCATTTCATATCCCTCAGTAACACA 57.806 36.000 0.00 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
208 225 0.315251 TGTTGACTCTGTGAGGCTCG 59.685 55.000 10.42 0.00 38.75 5.03
238 255 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
239 256 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
240 257 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
242 259 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
243 260 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
244 261 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
245 262 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
246 263 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
247 264 8.893563 ATAAAGTTGGGTCATCTATTTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
248 265 9.403583 GTATAAAGTTGGGTCATCTATTTTGGA 57.596 33.333 0.00 0.00 0.00 3.53
249 266 9.408648 AGTATAAAGTTGGGTCATCTATTTTGG 57.591 33.333 0.00 0.00 0.00 3.28
281 298 9.850198 ACCCAACTTTGTATTAACTTTGTACTA 57.150 29.630 0.00 0.00 0.00 1.82
282 299 8.756486 ACCCAACTTTGTATTAACTTTGTACT 57.244 30.769 0.00 0.00 0.00 2.73
283 300 8.623030 TGACCCAACTTTGTATTAACTTTGTAC 58.377 33.333 0.00 0.00 0.00 2.90
284 301 8.749026 TGACCCAACTTTGTATTAACTTTGTA 57.251 30.769 0.00 0.00 0.00 2.41
285 302 7.648039 TGACCCAACTTTGTATTAACTTTGT 57.352 32.000 0.00 0.00 0.00 2.83
286 303 8.576442 AGATGACCCAACTTTGTATTAACTTTG 58.424 33.333 0.00 0.00 0.00 2.77
287 304 8.706322 AGATGACCCAACTTTGTATTAACTTT 57.294 30.769 0.00 0.00 0.00 2.66
288 305 9.975218 ATAGATGACCCAACTTTGTATTAACTT 57.025 29.630 0.00 0.00 0.00 2.66
289 306 9.975218 AATAGATGACCCAACTTTGTATTAACT 57.025 29.630 0.00 0.00 0.00 2.24
296 313 8.793592 GTTCTAAAATAGATGACCCAACTTTGT 58.206 33.333 0.00 0.00 34.22 2.83
297 314 7.962918 CGTTCTAAAATAGATGACCCAACTTTG 59.037 37.037 0.00 0.00 34.22 2.77
298 315 7.120726 CCGTTCTAAAATAGATGACCCAACTTT 59.879 37.037 0.00 0.00 34.22 2.66
299 316 6.598064 CCGTTCTAAAATAGATGACCCAACTT 59.402 38.462 0.00 0.00 34.22 2.66
300 317 6.070424 TCCGTTCTAAAATAGATGACCCAACT 60.070 38.462 0.00 0.00 34.22 3.16
301 318 6.110707 TCCGTTCTAAAATAGATGACCCAAC 58.889 40.000 0.00 0.00 34.22 3.77
302 319 6.302535 TCCGTTCTAAAATAGATGACCCAA 57.697 37.500 0.00 0.00 34.22 4.12
303 320 5.163343 CCTCCGTTCTAAAATAGATGACCCA 60.163 44.000 0.00 0.00 34.22 4.51
304 321 5.298347 CCTCCGTTCTAAAATAGATGACCC 58.702 45.833 0.00 0.00 34.22 4.46
305 322 5.070047 TCCCTCCGTTCTAAAATAGATGACC 59.930 44.000 0.00 0.00 34.22 4.02
306 323 6.158023 TCCCTCCGTTCTAAAATAGATGAC 57.842 41.667 0.00 0.00 34.22 3.06
307 324 5.897824 ACTCCCTCCGTTCTAAAATAGATGA 59.102 40.000 0.00 0.00 34.22 2.92
308 325 6.163135 ACTCCCTCCGTTCTAAAATAGATG 57.837 41.667 0.00 0.00 34.22 2.90
309 326 8.368668 CAATACTCCCTCCGTTCTAAAATAGAT 58.631 37.037 0.00 0.00 34.22 1.98
310 327 7.343833 ACAATACTCCCTCCGTTCTAAAATAGA 59.656 37.037 0.00 0.00 0.00 1.98
311 328 7.498443 ACAATACTCCCTCCGTTCTAAAATAG 58.502 38.462 0.00 0.00 0.00 1.73
312 329 7.418254 GGACAATACTCCCTCCGTTCTAAAATA 60.418 40.741 0.00 0.00 0.00 1.40
313 330 6.309389 ACAATACTCCCTCCGTTCTAAAAT 57.691 37.500 0.00 0.00 0.00 1.82
314 331 5.337813 GGACAATACTCCCTCCGTTCTAAAA 60.338 44.000 0.00 0.00 0.00 1.52
315 332 4.161001 GGACAATACTCCCTCCGTTCTAAA 59.839 45.833 0.00 0.00 0.00 1.85
316 333 3.703052 GGACAATACTCCCTCCGTTCTAA 59.297 47.826 0.00 0.00 0.00 2.10
317 334 3.294214 GGACAATACTCCCTCCGTTCTA 58.706 50.000 0.00 0.00 0.00 2.10
318 335 2.108970 GGACAATACTCCCTCCGTTCT 58.891 52.381 0.00 0.00 0.00 3.01
319 336 1.829222 TGGACAATACTCCCTCCGTTC 59.171 52.381 0.00 0.00 0.00 3.95
320 337 1.831736 CTGGACAATACTCCCTCCGTT 59.168 52.381 0.00 0.00 0.00 4.44
321 338 1.273098 ACTGGACAATACTCCCTCCGT 60.273 52.381 0.00 0.00 0.00 4.69
322 339 1.137086 CACTGGACAATACTCCCTCCG 59.863 57.143 0.00 0.00 0.00 4.63
323 340 2.093447 CACACTGGACAATACTCCCTCC 60.093 54.545 0.00 0.00 0.00 4.30
324 341 2.832129 TCACACTGGACAATACTCCCTC 59.168 50.000 0.00 0.00 0.00 4.30
325 342 2.567615 GTCACACTGGACAATACTCCCT 59.432 50.000 0.00 0.00 37.73 4.20
326 343 2.354805 GGTCACACTGGACAATACTCCC 60.355 54.545 0.00 0.00 39.59 4.30
327 344 2.354805 GGGTCACACTGGACAATACTCC 60.355 54.545 0.00 0.00 39.59 3.85
328 345 2.301870 TGGGTCACACTGGACAATACTC 59.698 50.000 0.00 0.00 39.59 2.59
329 346 2.334977 TGGGTCACACTGGACAATACT 58.665 47.619 0.00 0.00 39.59 2.12
330 347 2.851263 TGGGTCACACTGGACAATAC 57.149 50.000 0.00 0.00 39.59 1.89
331 348 5.708736 ATATTGGGTCACACTGGACAATA 57.291 39.130 0.00 0.00 39.59 1.90
332 349 2.978156 ATTGGGTCACACTGGACAAT 57.022 45.000 0.00 0.00 39.59 2.71
333 350 4.380843 AATATTGGGTCACACTGGACAA 57.619 40.909 0.00 0.00 39.59 3.18
334 351 5.436175 CATAATATTGGGTCACACTGGACA 58.564 41.667 0.00 0.00 39.59 4.02
335 352 4.275936 GCATAATATTGGGTCACACTGGAC 59.724 45.833 0.00 0.00 37.06 4.02
336 353 4.080072 TGCATAATATTGGGTCACACTGGA 60.080 41.667 0.00 0.00 0.00 3.86
337 354 4.206375 TGCATAATATTGGGTCACACTGG 58.794 43.478 0.00 0.00 0.00 4.00
338 355 5.125356 TCTGCATAATATTGGGTCACACTG 58.875 41.667 0.00 0.00 0.00 3.66
339 356 5.130975 TCTCTGCATAATATTGGGTCACACT 59.869 40.000 0.00 0.00 0.00 3.55
340 357 5.368145 TCTCTGCATAATATTGGGTCACAC 58.632 41.667 0.00 0.00 0.00 3.82
341 358 5.628797 TCTCTGCATAATATTGGGTCACA 57.371 39.130 0.00 0.00 0.00 3.58
342 359 8.798859 AATATCTCTGCATAATATTGGGTCAC 57.201 34.615 0.00 0.00 0.00 3.67
352 369 9.327628 CTTGCTGCTATAATATCTCTGCATAAT 57.672 33.333 0.00 0.00 33.03 1.28
353 370 7.767659 CCTTGCTGCTATAATATCTCTGCATAA 59.232 37.037 0.00 0.00 33.03 1.90
354 371 7.270779 CCTTGCTGCTATAATATCTCTGCATA 58.729 38.462 0.00 0.00 33.03 3.14
355 372 6.114089 CCTTGCTGCTATAATATCTCTGCAT 58.886 40.000 0.00 0.00 33.03 3.96
358 375 5.485620 TGCCTTGCTGCTATAATATCTCTG 58.514 41.667 0.00 0.00 0.00 3.35
390 407 5.652994 TTTAATATTGGGTCACACTTGGC 57.347 39.130 0.00 0.00 0.00 4.52
403 420 5.336744 ACGCCATGTTCCGTTTTAATATTG 58.663 37.500 0.00 0.00 33.26 1.90
405 422 4.636648 TGACGCCATGTTCCGTTTTAATAT 59.363 37.500 5.06 0.00 37.87 1.28
425 442 2.342648 GTGGACAGGGTCGGTGAC 59.657 66.667 0.00 0.00 32.65 3.67
426 443 2.123208 TGTGGACAGGGTCGGTGA 60.123 61.111 0.00 0.00 32.65 4.02
429 446 1.261938 TATGGTGTGGACAGGGTCGG 61.262 60.000 0.00 0.00 32.65 4.79
430 447 0.830648 ATATGGTGTGGACAGGGTCG 59.169 55.000 0.00 0.00 32.65 4.79
432 449 1.213296 GGATATGGTGTGGACAGGGT 58.787 55.000 0.00 0.00 0.00 4.34
433 450 0.106708 CGGATATGGTGTGGACAGGG 59.893 60.000 0.00 0.00 0.00 4.45
434 451 0.106708 CCGGATATGGTGTGGACAGG 59.893 60.000 0.00 0.00 0.00 4.00
435 452 0.532862 GCCGGATATGGTGTGGACAG 60.533 60.000 5.05 0.00 0.00 3.51
436 453 0.980754 AGCCGGATATGGTGTGGACA 60.981 55.000 5.05 0.00 0.00 4.02
437 454 0.532862 CAGCCGGATATGGTGTGGAC 60.533 60.000 5.05 0.00 0.00 4.02
438 455 0.980754 ACAGCCGGATATGGTGTGGA 60.981 55.000 5.05 0.00 42.39 4.02
440 457 1.134401 AGAACAGCCGGATATGGTGTG 60.134 52.381 5.05 0.00 43.12 3.82
441 458 1.139058 GAGAACAGCCGGATATGGTGT 59.861 52.381 5.05 0.00 45.63 4.16
442 459 1.138859 TGAGAACAGCCGGATATGGTG 59.861 52.381 5.05 0.00 37.25 4.17
443 460 1.496060 TGAGAACAGCCGGATATGGT 58.504 50.000 5.05 0.00 0.00 3.55
452 480 0.884704 TCCGTGCTTTGAGAACAGCC 60.885 55.000 0.00 0.00 0.00 4.85
453 481 0.944386 TTCCGTGCTTTGAGAACAGC 59.056 50.000 0.00 0.00 0.00 4.40
464 520 0.392193 CCATCTCTTGCTTCCGTGCT 60.392 55.000 0.00 0.00 0.00 4.40
466 522 2.322355 ATCCATCTCTTGCTTCCGTG 57.678 50.000 0.00 0.00 0.00 4.94
482 538 9.871238 TCTGCTTCGGTTTATTTATATCTATCC 57.129 33.333 0.00 0.00 0.00 2.59
489 545 7.171508 CAGATGCTCTGCTTCGGTTTATTTATA 59.828 37.037 1.08 0.00 37.72 0.98
507 568 2.948315 GGGGTTCAGAATTCAGATGCTC 59.052 50.000 8.44 1.67 0.00 4.26
509 570 2.726821 TGGGGTTCAGAATTCAGATGC 58.273 47.619 8.44 1.76 0.00 3.91
528 589 1.093159 GCAGCACCTGGAAGAAGATG 58.907 55.000 0.00 0.00 34.07 2.90
535 596 0.749818 TCAAAACGCAGCACCTGGAA 60.750 50.000 0.00 0.00 31.21 3.53
536 597 0.537143 ATCAAAACGCAGCACCTGGA 60.537 50.000 0.00 0.00 31.21 3.86
537 598 0.314935 AATCAAAACGCAGCACCTGG 59.685 50.000 0.00 0.00 31.21 4.45
538 599 2.138596 AAATCAAAACGCAGCACCTG 57.861 45.000 0.00 0.00 34.12 4.00
539 600 3.505680 TCATAAATCAAAACGCAGCACCT 59.494 39.130 0.00 0.00 0.00 4.00
540 601 3.832276 TCATAAATCAAAACGCAGCACC 58.168 40.909 0.00 0.00 0.00 5.01
541 602 4.722194 TCTCATAAATCAAAACGCAGCAC 58.278 39.130 0.00 0.00 0.00 4.40
542 603 4.142622 CCTCTCATAAATCAAAACGCAGCA 60.143 41.667 0.00 0.00 0.00 4.41
543 604 4.346129 CCTCTCATAAATCAAAACGCAGC 58.654 43.478 0.00 0.00 0.00 5.25
544 605 4.095483 AGCCTCTCATAAATCAAAACGCAG 59.905 41.667 0.00 0.00 0.00 5.18
545 606 4.009675 AGCCTCTCATAAATCAAAACGCA 58.990 39.130 0.00 0.00 0.00 5.24
546 607 4.333926 AGAGCCTCTCATAAATCAAAACGC 59.666 41.667 0.00 0.00 32.06 4.84
559 634 0.891373 CGTTCCTTCAGAGCCTCTCA 59.109 55.000 0.00 0.00 32.06 3.27
564 639 0.603569 TGTCTCGTTCCTTCAGAGCC 59.396 55.000 0.00 0.00 32.42 4.70
758 838 1.001974 CTCCGGAGTTGACAACCATCA 59.998 52.381 24.04 0.00 0.00 3.07
787 867 4.072131 TCCTATCTTTGACAAACCTGCAC 58.928 43.478 0.00 0.00 0.00 4.57
842 923 0.886490 CAACAGCTCCTTCACCGCTT 60.886 55.000 0.00 0.00 0.00 4.68
876 957 7.479980 TGCATTTATTTATTCGTCTGAAAGGG 58.520 34.615 0.00 0.00 37.71 3.95
877 958 8.909708 TTGCATTTATTTATTCGTCTGAAAGG 57.090 30.769 0.00 0.00 37.71 3.11
912 993 0.740868 CTGGTCATACGTGCCTGTGG 60.741 60.000 0.00 0.00 0.00 4.17
941 1023 6.266558 GCAGTTTCTCCCTCTTCAGATAGATA 59.733 42.308 0.00 0.00 0.00 1.98
942 1024 5.070313 GCAGTTTCTCCCTCTTCAGATAGAT 59.930 44.000 0.00 0.00 0.00 1.98
943 1025 4.404073 GCAGTTTCTCCCTCTTCAGATAGA 59.596 45.833 0.00 0.00 0.00 1.98
944 1026 4.405358 AGCAGTTTCTCCCTCTTCAGATAG 59.595 45.833 0.00 0.00 0.00 2.08
983 1065 0.464916 ACTGGTTCGGTGGTTCCAAC 60.465 55.000 0.00 0.00 35.57 3.77
990 1072 1.451387 GCCCATACTGGTTCGGTGG 60.451 63.158 0.00 0.00 35.17 4.61
993 1075 0.819259 CCATGCCCATACTGGTTCGG 60.819 60.000 0.00 0.00 35.17 4.30
1137 1231 2.669569 GCGCTGCTGTTCCAGGAA 60.670 61.111 0.00 0.00 30.12 3.36
1812 1911 3.691609 GGATGGTTCCTGTGAAGTGATTC 59.308 47.826 0.00 0.00 39.14 2.52
1842 1941 6.927294 ACGAGGGAAGAAATGTTTGATATC 57.073 37.500 0.00 0.00 0.00 1.63
1900 1999 2.195389 CCAATGTGGGAGGCACATG 58.805 57.895 0.00 0.00 41.85 3.21
2655 2766 6.653989 CCCCTTTATATTCTTCAGTGACTGT 58.346 40.000 12.93 0.00 32.61 3.55
2785 2896 3.200958 ACCTACTGGTATTGACCCTGT 57.799 47.619 0.00 0.00 46.43 4.00
3091 3223 4.734398 ATGTCTTGTGGCTTTGTTTGAA 57.266 36.364 0.00 0.00 0.00 2.69
3894 4038 3.942115 GGCTTCTTCCAGTAAACATCTCC 59.058 47.826 0.00 0.00 0.00 3.71
3919 4063 6.378280 AGTGAATCCCCAAATGTTTCATCTAC 59.622 38.462 0.00 0.00 0.00 2.59
3988 4132 2.481441 TGTTGGGTCAGCTATCTCCAT 58.519 47.619 0.00 0.00 0.00 3.41
4042 4186 4.282496 CACTCCTGGATTCTACTAGTGGT 58.718 47.826 5.39 0.00 31.46 4.16
4043 4187 3.068873 GCACTCCTGGATTCTACTAGTGG 59.931 52.174 5.39 1.87 34.77 4.00
4044 4188 3.957497 AGCACTCCTGGATTCTACTAGTG 59.043 47.826 5.39 0.23 36.74 2.74
4210 7192 2.115266 CCGTGGCTCCCCTTTTGT 59.885 61.111 0.00 0.00 0.00 2.83
4325 7312 9.994432 GGATTTGACAGTTTACATTTATCTGAG 57.006 33.333 0.00 0.00 0.00 3.35
4341 7329 4.641396 TGTAGAACACCAGGATTTGACAG 58.359 43.478 0.00 0.00 0.00 3.51
4425 7413 9.974980 TTTTAGATTGAGGATGTGGTTTAAAAC 57.025 29.630 0.00 0.00 0.00 2.43
4429 7417 7.615365 AGCATTTTAGATTGAGGATGTGGTTTA 59.385 33.333 0.00 0.00 0.00 2.01
4449 7437 5.521010 CGATAAATTCATGTTGCCAGCATTT 59.479 36.000 0.00 0.00 0.00 2.32
4477 7465 3.252701 CAGTCTGACTGCTGATTTGCTTT 59.747 43.478 23.43 0.00 39.62 3.51
4538 7533 0.678950 TGCTACTGTGTACTGCTGCA 59.321 50.000 0.88 0.88 0.00 4.41
4540 7535 1.337167 TGCTGCTACTGTGTACTGCTG 60.337 52.381 0.00 0.00 0.00 4.41
4541 7536 0.969149 TGCTGCTACTGTGTACTGCT 59.031 50.000 0.00 0.00 0.00 4.24
4545 7540 5.637810 TCAATTACTTGCTGCTACTGTGTAC 59.362 40.000 0.00 0.00 32.11 2.90
4563 7558 9.461312 GGATATGTGCAATATTAGGGTCAATTA 57.539 33.333 0.00 0.00 0.00 1.40
4572 7567 7.967890 TGTCACTGGATATGTGCAATATTAG 57.032 36.000 0.00 1.30 35.58 1.73
4580 7575 3.129113 TGCATTTGTCACTGGATATGTGC 59.871 43.478 0.00 0.00 35.58 4.57
4593 7588 9.713740 TTGTGTTTTCAAATATTTGCATTTGTC 57.286 25.926 21.15 10.29 43.40 3.18
4614 7609 7.151308 TCTGTTTTGTGACAAATTTCTTGTGT 58.849 30.769 11.97 0.00 31.96 3.72
4621 7616 8.545229 TGTGATTTCTGTTTTGTGACAAATTT 57.455 26.923 11.97 0.00 0.00 1.82
4644 7641 7.117285 TGATACTGATGCATTTCTAGTCTGT 57.883 36.000 0.00 0.00 0.00 3.41
4671 7668 4.022849 ACATGCTACTGCTTTTGGAAACTC 60.023 41.667 0.00 0.00 40.48 3.01
4689 7686 3.560068 CCCGTGTTAGAAGGATTACATGC 59.440 47.826 0.00 0.00 0.00 4.06
4710 7709 3.236047 AGTTGGGTAATTTGGGTTCACC 58.764 45.455 0.00 0.00 40.81 4.02
4721 7720 8.215736 GGATGTGGTAGTATTTAGTTGGGTAAT 58.784 37.037 0.00 0.00 0.00 1.89
4733 7732 5.372343 TTGATGCTGGATGTGGTAGTATT 57.628 39.130 0.00 0.00 0.00 1.89
4740 7739 3.284617 TGAGAATTGATGCTGGATGTGG 58.715 45.455 0.00 0.00 0.00 4.17
4792 7791 3.252215 CCTCGACTCTGCTTAGACTATGG 59.748 52.174 0.00 0.00 0.00 2.74
4795 7794 3.799366 CTCCTCGACTCTGCTTAGACTA 58.201 50.000 0.00 0.00 0.00 2.59
4807 7806 0.328592 TGTACTCCTGCTCCTCGACT 59.671 55.000 0.00 0.00 0.00 4.18
4808 7807 0.736053 CTGTACTCCTGCTCCTCGAC 59.264 60.000 0.00 0.00 0.00 4.20
4809 7808 0.394488 CCTGTACTCCTGCTCCTCGA 60.394 60.000 0.00 0.00 0.00 4.04
4810 7809 0.394488 TCCTGTACTCCTGCTCCTCG 60.394 60.000 0.00 0.00 0.00 4.63
4811 7810 1.398692 CTCCTGTACTCCTGCTCCTC 58.601 60.000 0.00 0.00 0.00 3.71
4812 7811 0.032615 CCTCCTGTACTCCTGCTCCT 60.033 60.000 0.00 0.00 0.00 3.69
4813 7812 1.045911 CCCTCCTGTACTCCTGCTCC 61.046 65.000 0.00 0.00 0.00 4.70
4814 7813 1.681486 GCCCTCCTGTACTCCTGCTC 61.681 65.000 0.00 0.00 0.00 4.26
4815 7814 1.687493 GCCCTCCTGTACTCCTGCT 60.687 63.158 0.00 0.00 0.00 4.24
4816 7815 0.397254 TAGCCCTCCTGTACTCCTGC 60.397 60.000 0.00 0.00 0.00 4.85
4817 7816 1.063567 ACTAGCCCTCCTGTACTCCTG 60.064 57.143 0.00 0.00 0.00 3.86
4818 7817 1.310877 ACTAGCCCTCCTGTACTCCT 58.689 55.000 0.00 0.00 0.00 3.69
4819 7818 2.162264 AACTAGCCCTCCTGTACTCC 57.838 55.000 0.00 0.00 0.00 3.85
4820 7819 4.954826 TCTTAAACTAGCCCTCCTGTACTC 59.045 45.833 0.00 0.00 0.00 2.59
4821 7820 4.944177 TCTTAAACTAGCCCTCCTGTACT 58.056 43.478 0.00 0.00 0.00 2.73
4822 7821 5.873146 ATCTTAAACTAGCCCTCCTGTAC 57.127 43.478 0.00 0.00 0.00 2.90
4823 7822 5.962031 TCAATCTTAAACTAGCCCTCCTGTA 59.038 40.000 0.00 0.00 0.00 2.74
4824 7823 4.783227 TCAATCTTAAACTAGCCCTCCTGT 59.217 41.667 0.00 0.00 0.00 4.00
4825 7824 5.359194 TCAATCTTAAACTAGCCCTCCTG 57.641 43.478 0.00 0.00 0.00 3.86
4826 7825 5.072464 GGATCAATCTTAAACTAGCCCTCCT 59.928 44.000 0.00 0.00 0.00 3.69
4827 7826 5.309638 GGATCAATCTTAAACTAGCCCTCC 58.690 45.833 0.00 0.00 0.00 4.30
4828 7827 4.991687 CGGATCAATCTTAAACTAGCCCTC 59.008 45.833 0.00 0.00 0.00 4.30
4829 7828 4.743955 GCGGATCAATCTTAAACTAGCCCT 60.744 45.833 0.00 0.00 0.00 5.19
4830 7829 3.498777 GCGGATCAATCTTAAACTAGCCC 59.501 47.826 0.00 0.00 0.00 5.19
4831 7830 3.498777 GGCGGATCAATCTTAAACTAGCC 59.501 47.826 0.00 0.00 0.00 3.93
4832 7831 4.381411 AGGCGGATCAATCTTAAACTAGC 58.619 43.478 0.00 0.00 0.00 3.42
4833 7832 4.991687 GGAGGCGGATCAATCTTAAACTAG 59.008 45.833 0.00 0.00 0.00 2.57
4834 7833 4.654262 AGGAGGCGGATCAATCTTAAACTA 59.346 41.667 0.00 0.00 0.00 2.24
4835 7834 3.456277 AGGAGGCGGATCAATCTTAAACT 59.544 43.478 0.00 0.00 0.00 2.66
4836 7835 3.561725 CAGGAGGCGGATCAATCTTAAAC 59.438 47.826 0.00 0.00 0.00 2.01
4837 7836 3.808728 CAGGAGGCGGATCAATCTTAAA 58.191 45.455 0.00 0.00 0.00 1.52
4838 7837 2.485479 GCAGGAGGCGGATCAATCTTAA 60.485 50.000 0.00 0.00 0.00 1.85
4839 7838 1.070758 GCAGGAGGCGGATCAATCTTA 59.929 52.381 0.00 0.00 0.00 2.10
4840 7839 0.179034 GCAGGAGGCGGATCAATCTT 60.179 55.000 0.00 0.00 0.00 2.40
4841 7840 1.449353 GCAGGAGGCGGATCAATCT 59.551 57.895 0.00 0.00 0.00 2.40
4842 7841 4.055654 GCAGGAGGCGGATCAATC 57.944 61.111 0.00 0.00 0.00 2.67
4852 7851 1.895238 CAATTGGCCTTGCAGGAGG 59.105 57.895 3.32 0.00 37.67 4.30
4859 7858 3.940209 TTCAGTAAGCAATTGGCCTTG 57.060 42.857 3.32 1.57 46.50 3.61
4860 7859 3.448660 GGATTCAGTAAGCAATTGGCCTT 59.551 43.478 3.32 5.62 46.50 4.35
4861 7860 3.026694 GGATTCAGTAAGCAATTGGCCT 58.973 45.455 3.32 0.00 46.50 5.19
4862 7861 2.223572 CGGATTCAGTAAGCAATTGGCC 60.224 50.000 7.72 0.00 46.50 5.36
4863 7862 2.796032 GCGGATTCAGTAAGCAATTGGC 60.796 50.000 7.72 0.00 45.30 4.52
4864 7863 2.223572 GGCGGATTCAGTAAGCAATTGG 60.224 50.000 7.72 0.00 0.00 3.16
4865 7864 2.223572 GGGCGGATTCAGTAAGCAATTG 60.224 50.000 0.00 0.00 0.00 2.32
4866 7865 2.024414 GGGCGGATTCAGTAAGCAATT 58.976 47.619 0.00 0.00 0.00 2.32
4867 7866 1.064758 TGGGCGGATTCAGTAAGCAAT 60.065 47.619 0.00 0.00 0.00 3.56
4868 7867 0.326595 TGGGCGGATTCAGTAAGCAA 59.673 50.000 0.00 0.00 0.00 3.91
4869 7868 0.326595 TTGGGCGGATTCAGTAAGCA 59.673 50.000 0.00 0.00 0.00 3.91
4870 7869 0.733150 GTTGGGCGGATTCAGTAAGC 59.267 55.000 0.00 0.00 0.00 3.09
4871 7870 1.065418 AGGTTGGGCGGATTCAGTAAG 60.065 52.381 0.00 0.00 0.00 2.34
4872 7871 0.988832 AGGTTGGGCGGATTCAGTAA 59.011 50.000 0.00 0.00 0.00 2.24
4873 7872 0.988832 AAGGTTGGGCGGATTCAGTA 59.011 50.000 0.00 0.00 0.00 2.74
4874 7873 0.988832 TAAGGTTGGGCGGATTCAGT 59.011 50.000 0.00 0.00 0.00 3.41
4875 7874 1.339631 TGTAAGGTTGGGCGGATTCAG 60.340 52.381 0.00 0.00 0.00 3.02
4876 7875 0.693622 TGTAAGGTTGGGCGGATTCA 59.306 50.000 0.00 0.00 0.00 2.57
4877 7876 1.065709 TCTGTAAGGTTGGGCGGATTC 60.066 52.381 0.00 0.00 0.00 2.52
4878 7877 0.988832 TCTGTAAGGTTGGGCGGATT 59.011 50.000 0.00 0.00 0.00 3.01
4879 7878 0.988832 TTCTGTAAGGTTGGGCGGAT 59.011 50.000 0.00 0.00 0.00 4.18
4880 7879 0.035739 GTTCTGTAAGGTTGGGCGGA 59.964 55.000 0.00 0.00 0.00 5.54
4881 7880 0.250553 TGTTCTGTAAGGTTGGGCGG 60.251 55.000 0.00 0.00 0.00 6.13
4882 7881 0.872388 GTGTTCTGTAAGGTTGGGCG 59.128 55.000 0.00 0.00 0.00 6.13
4883 7882 2.271944 AGTGTTCTGTAAGGTTGGGC 57.728 50.000 0.00 0.00 0.00 5.36
4884 7883 3.815809 TCAAGTGTTCTGTAAGGTTGGG 58.184 45.455 0.00 0.00 0.00 4.12
4885 7884 5.063204 TGATCAAGTGTTCTGTAAGGTTGG 58.937 41.667 0.00 0.00 0.00 3.77
4886 7885 6.618287 TTGATCAAGTGTTCTGTAAGGTTG 57.382 37.500 3.38 0.00 0.00 3.77
4887 7886 6.294176 GCATTGATCAAGTGTTCTGTAAGGTT 60.294 38.462 14.54 0.00 0.00 3.50
4888 7887 5.182001 GCATTGATCAAGTGTTCTGTAAGGT 59.818 40.000 14.54 0.00 0.00 3.50
4889 7888 5.413833 AGCATTGATCAAGTGTTCTGTAAGG 59.586 40.000 14.54 0.00 0.00 2.69
4890 7889 6.492007 AGCATTGATCAAGTGTTCTGTAAG 57.508 37.500 14.54 0.00 0.00 2.34
4891 7890 6.882610 AAGCATTGATCAAGTGTTCTGTAA 57.117 33.333 14.54 0.00 0.00 2.41
4892 7891 6.882610 AAAGCATTGATCAAGTGTTCTGTA 57.117 33.333 14.54 0.00 0.00 2.74
4893 7892 5.779529 AAAGCATTGATCAAGTGTTCTGT 57.220 34.783 14.54 0.00 0.00 3.41
4894 7893 7.325338 CAGTTAAAGCATTGATCAAGTGTTCTG 59.675 37.037 14.54 7.16 0.00 3.02
4895 7894 7.365741 CAGTTAAAGCATTGATCAAGTGTTCT 58.634 34.615 14.54 3.50 0.00 3.01
4896 7895 6.088616 GCAGTTAAAGCATTGATCAAGTGTTC 59.911 38.462 14.54 1.29 0.00 3.18
4897 7896 5.922544 GCAGTTAAAGCATTGATCAAGTGTT 59.077 36.000 14.54 7.66 0.00 3.32
4898 7897 5.464168 GCAGTTAAAGCATTGATCAAGTGT 58.536 37.500 14.54 0.00 0.00 3.55
4899 7898 4.860907 GGCAGTTAAAGCATTGATCAAGTG 59.139 41.667 14.54 12.62 0.00 3.16
4900 7899 4.523943 TGGCAGTTAAAGCATTGATCAAGT 59.476 37.500 14.54 0.00 0.00 3.16
4901 7900 4.860907 GTGGCAGTTAAAGCATTGATCAAG 59.139 41.667 14.54 7.33 0.00 3.02
4902 7901 4.321899 GGTGGCAGTTAAAGCATTGATCAA 60.322 41.667 11.26 11.26 0.00 2.57
4903 7902 3.193267 GGTGGCAGTTAAAGCATTGATCA 59.807 43.478 0.00 0.00 0.00 2.92
4904 7903 3.193267 TGGTGGCAGTTAAAGCATTGATC 59.807 43.478 0.00 0.00 0.00 2.92
4905 7904 3.164268 TGGTGGCAGTTAAAGCATTGAT 58.836 40.909 0.00 0.00 0.00 2.57
4906 7905 2.591923 TGGTGGCAGTTAAAGCATTGA 58.408 42.857 0.00 0.00 0.00 2.57
4907 7906 3.255725 CATGGTGGCAGTTAAAGCATTG 58.744 45.455 0.00 0.00 29.97 2.82
4908 7907 2.899256 ACATGGTGGCAGTTAAAGCATT 59.101 40.909 0.00 0.00 29.97 3.56
4909 7908 2.528564 ACATGGTGGCAGTTAAAGCAT 58.471 42.857 0.00 0.00 32.49 3.79
4910 7909 1.993956 ACATGGTGGCAGTTAAAGCA 58.006 45.000 0.00 0.00 0.00 3.91
4911 7910 3.673323 GCTAACATGGTGGCAGTTAAAGC 60.673 47.826 15.04 0.00 0.00 3.51
4912 7911 3.505680 TGCTAACATGGTGGCAGTTAAAG 59.494 43.478 18.89 0.00 0.00 1.85
4913 7912 3.491342 TGCTAACATGGTGGCAGTTAAA 58.509 40.909 18.89 0.00 0.00 1.52
4914 7913 3.147553 TGCTAACATGGTGGCAGTTAA 57.852 42.857 18.89 0.00 0.00 2.01
4915 7914 2.869101 TGCTAACATGGTGGCAGTTA 57.131 45.000 18.89 0.00 0.00 2.24
4916 7915 1.993956 TTGCTAACATGGTGGCAGTT 58.006 45.000 21.62 0.00 36.06 3.16
4917 7916 1.993956 TTTGCTAACATGGTGGCAGT 58.006 45.000 21.62 0.00 36.06 4.40
4918 7917 3.598019 ATTTTGCTAACATGGTGGCAG 57.402 42.857 21.62 0.00 36.06 4.85
4919 7918 4.339748 TCTATTTTGCTAACATGGTGGCA 58.660 39.130 18.89 18.89 0.00 4.92
4920 7919 4.640201 TCTCTATTTTGCTAACATGGTGGC 59.360 41.667 12.90 12.90 0.00 5.01
4921 7920 6.769822 AGATCTCTATTTTGCTAACATGGTGG 59.230 38.462 0.00 0.00 0.00 4.61
4922 7921 7.798596 AGATCTCTATTTTGCTAACATGGTG 57.201 36.000 0.00 0.00 0.00 4.17
4923 7922 8.814038 AAAGATCTCTATTTTGCTAACATGGT 57.186 30.769 0.00 0.00 0.00 3.55
4925 7924 9.875675 GCTAAAGATCTCTATTTTGCTAACATG 57.124 33.333 0.00 0.00 35.30 3.21
4926 7925 9.844257 AGCTAAAGATCTCTATTTTGCTAACAT 57.156 29.630 10.75 0.00 42.75 2.71
5006 8005 3.496160 GCCAGTCACTTCCTTCCTAACAA 60.496 47.826 0.00 0.00 0.00 2.83
5048 8047 0.179197 CATTTGAGCAGTGCAGAGCG 60.179 55.000 19.20 0.00 35.48 5.03
5056 8055 2.226962 ATTCAGGGCATTTGAGCAGT 57.773 45.000 0.00 0.00 35.83 4.40
5099 8098 7.988737 TCATGCATTAAACTGTTGAGATAAGG 58.011 34.615 0.00 0.00 0.00 2.69
5123 8122 4.943705 TGCACTCAGAAGGAATTATGGTTC 59.056 41.667 0.00 0.00 0.00 3.62
5185 8187 6.866480 TGAGGGATATGAAATGAAAAAGTGC 58.134 36.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.