Multiple sequence alignment - TraesCS3D01G061000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G061000 chr3D 100.000 3571 0 0 1 3571 26456913 26453343 0 6595
1 TraesCS3D01G061000 chr3A 97.131 2963 53 10 631 3571 36493548 36490596 0 4972
2 TraesCS3D01G061000 chr3B 96.226 2941 78 11 654 3571 44284886 44281956 0 4785


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G061000 chr3D 26453343 26456913 3570 True 6595 6595 100.000 1 3571 1 chr3D.!!$R1 3570
1 TraesCS3D01G061000 chr3A 36490596 36493548 2952 True 4972 4972 97.131 631 3571 1 chr3A.!!$R1 2940
2 TraesCS3D01G061000 chr3B 44281956 44284886 2930 True 4785 4785 96.226 654 3571 1 chr3B.!!$R1 2917

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
611 612 0.165944 CCAAACGCCGAGATGAACAC 59.834 55.000 0.00 0.00 0.00 3.32 F
1210 1211 0.597568 CAAAGATGTTTGGGCGCTCA 59.402 50.000 5.44 5.44 39.63 4.26 F
1233 1234 3.509442 TCACCCTGCTGAAAATGGAAAT 58.491 40.909 0.00 0.00 0.00 2.17 F
2063 2064 3.981416 GGCCAGAAATCGAAAACAAAGTC 59.019 43.478 0.00 0.00 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2065 2066 0.178953 AGGGCATTCCTTGTTGCTGT 60.179 50.000 0.0 0.0 45.47 4.40 R
2066 2067 0.245539 CAGGGCATTCCTTGTTGCTG 59.754 55.000 0.0 0.0 45.47 4.41 R
2079 2080 1.375396 CGGTTGTCGATTCAGGGCA 60.375 57.895 0.0 0.0 42.43 5.36 R
3140 3163 2.603560 CAGAGATTAACGGGCGAACTTC 59.396 50.000 0.0 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.627395 AAACTGTTGTCGAAACATATGGAA 57.373 33.333 7.80 0.00 34.73 3.53
24 25 6.817765 AACTGTTGTCGAAACATATGGAAT 57.182 33.333 7.80 0.00 34.73 3.01
25 26 6.817765 ACTGTTGTCGAAACATATGGAATT 57.182 33.333 7.80 0.00 34.73 2.17
26 27 7.915293 ACTGTTGTCGAAACATATGGAATTA 57.085 32.000 7.80 0.00 34.73 1.40
27 28 8.506168 ACTGTTGTCGAAACATATGGAATTAT 57.494 30.769 7.80 0.00 34.73 1.28
28 29 9.607988 ACTGTTGTCGAAACATATGGAATTATA 57.392 29.630 7.80 0.00 34.73 0.98
63 64 4.409342 CGAAGGTCTCGCCATGAG 57.591 61.111 0.00 0.00 46.72 2.90
64 65 1.227089 CGAAGGTCTCGCCATGAGG 60.227 63.158 0.00 0.00 45.32 3.86
65 66 1.667154 CGAAGGTCTCGCCATGAGGA 61.667 60.000 0.00 0.00 45.32 3.71
66 67 0.537188 GAAGGTCTCGCCATGAGGAA 59.463 55.000 0.00 0.00 45.32 3.36
67 68 0.539051 AAGGTCTCGCCATGAGGAAG 59.461 55.000 0.00 0.00 45.32 3.46
68 69 1.522580 GGTCTCGCCATGAGGAAGC 60.523 63.158 0.00 0.00 45.32 3.86
69 70 1.522580 GTCTCGCCATGAGGAAGCC 60.523 63.158 0.00 0.00 45.32 4.35
70 71 2.587194 CTCGCCATGAGGAAGCCG 60.587 66.667 0.00 0.00 41.29 5.52
71 72 3.074369 TCGCCATGAGGAAGCCGA 61.074 61.111 0.00 0.00 36.89 5.54
72 73 2.109799 CGCCATGAGGAAGCCGAT 59.890 61.111 0.00 0.00 36.89 4.18
73 74 2.249535 CGCCATGAGGAAGCCGATG 61.250 63.158 0.00 0.00 36.89 3.84
74 75 1.895707 GCCATGAGGAAGCCGATGG 60.896 63.158 11.20 11.20 39.71 3.51
75 76 1.528824 CCATGAGGAAGCCGATGGT 59.471 57.895 0.00 0.00 35.23 3.55
76 77 0.816825 CCATGAGGAAGCCGATGGTG 60.817 60.000 0.00 0.00 35.23 4.17
77 78 0.178767 CATGAGGAAGCCGATGGTGA 59.821 55.000 0.00 0.00 0.00 4.02
78 79 0.911769 ATGAGGAAGCCGATGGTGAA 59.088 50.000 0.00 0.00 0.00 3.18
79 80 0.690192 TGAGGAAGCCGATGGTGAAA 59.310 50.000 0.00 0.00 0.00 2.69
80 81 1.339055 TGAGGAAGCCGATGGTGAAAG 60.339 52.381 0.00 0.00 0.00 2.62
81 82 0.678048 AGGAAGCCGATGGTGAAAGC 60.678 55.000 0.00 0.00 0.00 3.51
82 83 1.425428 GAAGCCGATGGTGAAAGCG 59.575 57.895 0.00 0.00 36.92 4.68
83 84 1.982073 GAAGCCGATGGTGAAAGCGG 61.982 60.000 0.00 0.00 46.14 5.52
84 85 2.435938 GCCGATGGTGAAAGCGGA 60.436 61.111 4.89 0.00 46.29 5.54
85 86 1.819632 GCCGATGGTGAAAGCGGAT 60.820 57.895 4.89 0.00 46.29 4.18
86 87 1.776034 GCCGATGGTGAAAGCGGATC 61.776 60.000 4.89 0.00 46.29 3.36
87 88 0.461870 CCGATGGTGAAAGCGGATCA 60.462 55.000 0.00 0.00 46.29 2.92
88 89 1.586422 CGATGGTGAAAGCGGATCAT 58.414 50.000 0.00 0.00 36.92 2.45
89 90 1.528586 CGATGGTGAAAGCGGATCATC 59.471 52.381 0.00 0.00 36.92 2.92
90 91 2.564771 GATGGTGAAAGCGGATCATCA 58.435 47.619 5.12 5.12 41.80 3.07
91 92 2.488204 TGGTGAAAGCGGATCATCAA 57.512 45.000 0.00 0.00 35.08 2.57
92 93 3.003394 TGGTGAAAGCGGATCATCAAT 57.997 42.857 0.00 0.00 35.08 2.57
93 94 2.945008 TGGTGAAAGCGGATCATCAATC 59.055 45.455 0.00 0.00 35.08 2.67
94 95 2.945008 GGTGAAAGCGGATCATCAATCA 59.055 45.455 0.00 0.00 35.96 2.57
95 96 3.378112 GGTGAAAGCGGATCATCAATCAA 59.622 43.478 0.00 0.00 35.96 2.57
96 97 4.497006 GGTGAAAGCGGATCATCAATCAAG 60.497 45.833 0.00 0.00 35.96 3.02
97 98 4.095483 GTGAAAGCGGATCATCAATCAAGT 59.905 41.667 0.00 0.00 35.96 3.16
98 99 4.701651 TGAAAGCGGATCATCAATCAAGTT 59.298 37.500 0.00 0.00 35.96 2.66
99 100 5.879777 TGAAAGCGGATCATCAATCAAGTTA 59.120 36.000 0.00 0.00 35.96 2.24
100 101 6.374053 TGAAAGCGGATCATCAATCAAGTTAA 59.626 34.615 0.00 0.00 35.96 2.01
101 102 5.741388 AGCGGATCATCAATCAAGTTAAC 57.259 39.130 0.00 0.00 35.96 2.01
102 103 5.185454 AGCGGATCATCAATCAAGTTAACA 58.815 37.500 8.61 0.00 35.96 2.41
103 104 5.295292 AGCGGATCATCAATCAAGTTAACAG 59.705 40.000 8.61 0.00 35.96 3.16
104 105 5.065218 GCGGATCATCAATCAAGTTAACAGT 59.935 40.000 8.61 0.00 35.96 3.55
105 106 6.403636 GCGGATCATCAATCAAGTTAACAGTT 60.404 38.462 8.61 0.00 35.96 3.16
106 107 7.530010 CGGATCATCAATCAAGTTAACAGTTT 58.470 34.615 8.61 0.00 35.96 2.66
107 108 7.482743 CGGATCATCAATCAAGTTAACAGTTTG 59.517 37.037 8.61 10.92 35.96 2.93
108 109 8.514594 GGATCATCAATCAAGTTAACAGTTTGA 58.485 33.333 18.61 18.61 35.96 2.69
109 110 9.552114 GATCATCAATCAAGTTAACAGTTTGAG 57.448 33.333 19.91 14.95 34.64 3.02
110 111 7.874940 TCATCAATCAAGTTAACAGTTTGAGG 58.125 34.615 19.48 19.48 34.64 3.86
111 112 6.633500 TCAATCAAGTTAACAGTTTGAGGG 57.367 37.500 8.61 6.04 34.64 4.30
112 113 6.361433 TCAATCAAGTTAACAGTTTGAGGGA 58.639 36.000 8.61 8.00 34.64 4.20
113 114 7.004086 TCAATCAAGTTAACAGTTTGAGGGAT 58.996 34.615 8.61 0.00 34.64 3.85
114 115 8.160765 TCAATCAAGTTAACAGTTTGAGGGATA 58.839 33.333 8.61 0.00 34.64 2.59
115 116 8.792633 CAATCAAGTTAACAGTTTGAGGGATAA 58.207 33.333 8.61 0.00 34.64 1.75
116 117 8.934023 ATCAAGTTAACAGTTTGAGGGATAAA 57.066 30.769 8.61 0.00 34.64 1.40
117 118 8.754991 TCAAGTTAACAGTTTGAGGGATAAAA 57.245 30.769 8.61 0.00 0.00 1.52
118 119 8.626526 TCAAGTTAACAGTTTGAGGGATAAAAC 58.373 33.333 8.61 0.00 0.00 2.43
119 120 8.630037 CAAGTTAACAGTTTGAGGGATAAAACT 58.370 33.333 8.61 0.00 36.04 2.66
120 121 8.762481 AGTTAACAGTTTGAGGGATAAAACTT 57.238 30.769 8.61 0.00 33.64 2.66
121 122 9.197306 AGTTAACAGTTTGAGGGATAAAACTTT 57.803 29.630 8.61 1.35 33.64 2.66
122 123 9.811995 GTTAACAGTTTGAGGGATAAAACTTTT 57.188 29.630 0.00 2.34 33.64 2.27
180 181 9.778741 ACATAAACAAAGATCATACGATATGGT 57.221 29.630 0.00 0.00 29.66 3.55
182 183 9.996554 ATAAACAAAGATCATACGATATGGTCA 57.003 29.630 15.81 0.71 31.80 4.02
183 184 8.908786 AAACAAAGATCATACGATATGGTCAT 57.091 30.769 15.81 5.92 31.80 3.06
184 185 7.895975 ACAAAGATCATACGATATGGTCATG 57.104 36.000 15.81 15.25 31.80 3.07
185 186 7.670364 ACAAAGATCATACGATATGGTCATGA 58.330 34.615 18.98 0.00 31.80 3.07
186 187 7.816513 ACAAAGATCATACGATATGGTCATGAG 59.183 37.037 18.98 10.92 31.80 2.90
187 188 7.709149 AAGATCATACGATATGGTCATGAGA 57.291 36.000 15.81 0.00 31.80 3.27
188 189 7.894753 AGATCATACGATATGGTCATGAGAT 57.105 36.000 15.81 0.00 31.80 2.75
189 190 8.303780 AGATCATACGATATGGTCATGAGATT 57.696 34.615 15.81 0.00 31.80 2.40
190 191 8.196103 AGATCATACGATATGGTCATGAGATTG 58.804 37.037 15.81 0.00 31.80 2.67
191 192 7.232118 TCATACGATATGGTCATGAGATTGT 57.768 36.000 0.00 0.62 0.00 2.71
192 193 8.348285 TCATACGATATGGTCATGAGATTGTA 57.652 34.615 0.00 2.87 0.00 2.41
193 194 8.971073 TCATACGATATGGTCATGAGATTGTAT 58.029 33.333 0.00 5.02 30.48 2.29
194 195 9.242477 CATACGATATGGTCATGAGATTGTATC 57.758 37.037 0.00 0.15 28.72 2.24
195 196 7.232118 ACGATATGGTCATGAGATTGTATCA 57.768 36.000 0.00 0.00 0.00 2.15
196 197 7.845037 ACGATATGGTCATGAGATTGTATCAT 58.155 34.615 0.00 0.00 37.90 2.45
197 198 7.978414 ACGATATGGTCATGAGATTGTATCATC 59.022 37.037 0.00 0.00 35.20 2.92
198 199 8.196103 CGATATGGTCATGAGATTGTATCATCT 58.804 37.037 0.00 0.00 35.20 2.90
199 200 9.531942 GATATGGTCATGAGATTGTATCATCTC 57.468 37.037 0.00 4.07 42.62 2.75
200 201 5.776744 TGGTCATGAGATTGTATCATCTCG 58.223 41.667 0.00 0.00 44.59 4.04
201 202 5.536161 TGGTCATGAGATTGTATCATCTCGA 59.464 40.000 0.00 0.00 44.59 4.04
202 203 6.040842 TGGTCATGAGATTGTATCATCTCGAA 59.959 38.462 0.00 0.00 44.59 3.71
203 204 6.585702 GGTCATGAGATTGTATCATCTCGAAG 59.414 42.308 0.00 0.28 44.59 3.79
204 205 6.089283 GTCATGAGATTGTATCATCTCGAAGC 59.911 42.308 0.00 0.00 44.59 3.86
205 206 5.781210 TGAGATTGTATCATCTCGAAGCT 57.219 39.130 6.28 0.00 44.59 3.74
206 207 5.767269 TGAGATTGTATCATCTCGAAGCTC 58.233 41.667 6.28 0.00 44.59 4.09
207 208 5.534278 TGAGATTGTATCATCTCGAAGCTCT 59.466 40.000 6.28 0.00 44.59 4.09
208 209 6.012658 AGATTGTATCATCTCGAAGCTCTC 57.987 41.667 0.00 0.00 0.00 3.20
228 229 5.767269 TCTCGATTCAGAGAGTAATCATGC 58.233 41.667 0.00 0.00 41.86 4.06
229 230 5.534278 TCTCGATTCAGAGAGTAATCATGCT 59.466 40.000 0.00 0.00 41.86 3.79
230 231 5.527033 TCGATTCAGAGAGTAATCATGCTG 58.473 41.667 0.00 0.00 32.70 4.41
231 232 5.068329 TCGATTCAGAGAGTAATCATGCTGT 59.932 40.000 0.00 0.00 32.70 4.40
232 233 6.263168 TCGATTCAGAGAGTAATCATGCTGTA 59.737 38.462 0.00 0.00 32.70 2.74
233 234 6.920210 CGATTCAGAGAGTAATCATGCTGTAA 59.080 38.462 0.00 0.00 32.70 2.41
234 235 7.598118 CGATTCAGAGAGTAATCATGCTGTAAT 59.402 37.037 0.00 0.68 32.70 1.89
235 236 9.270640 GATTCAGAGAGTAATCATGCTGTAATT 57.729 33.333 0.00 0.00 33.26 1.40
236 237 9.624373 ATTCAGAGAGTAATCATGCTGTAATTT 57.376 29.630 0.00 0.00 0.00 1.82
237 238 9.453572 TTCAGAGAGTAATCATGCTGTAATTTT 57.546 29.630 0.00 0.00 0.00 1.82
238 239 8.886719 TCAGAGAGTAATCATGCTGTAATTTTG 58.113 33.333 0.00 0.00 0.00 2.44
239 240 8.886719 CAGAGAGTAATCATGCTGTAATTTTGA 58.113 33.333 0.00 0.00 0.00 2.69
240 241 8.887717 AGAGAGTAATCATGCTGTAATTTTGAC 58.112 33.333 0.00 0.00 0.00 3.18
241 242 8.565896 AGAGTAATCATGCTGTAATTTTGACA 57.434 30.769 0.00 0.00 0.00 3.58
242 243 9.182214 AGAGTAATCATGCTGTAATTTTGACAT 57.818 29.630 0.00 0.00 0.00 3.06
247 248 9.793252 AATCATGCTGTAATTTTGACATAAGAC 57.207 29.630 0.00 0.00 0.00 3.01
248 249 8.334263 TCATGCTGTAATTTTGACATAAGACA 57.666 30.769 0.00 0.00 0.00 3.41
249 250 8.791675 TCATGCTGTAATTTTGACATAAGACAA 58.208 29.630 0.00 0.00 0.00 3.18
250 251 9.409312 CATGCTGTAATTTTGACATAAGACAAA 57.591 29.630 0.00 0.00 37.56 2.83
252 253 9.409312 TGCTGTAATTTTGACATAAGACAAATG 57.591 29.630 0.00 0.00 38.72 2.32
253 254 9.410556 GCTGTAATTTTGACATAAGACAAATGT 57.589 29.630 0.00 0.00 38.72 2.71
295 296 9.941325 ATAGAAACAAGCTCATATATCTTGGAG 57.059 33.333 14.04 5.78 40.93 3.86
296 297 7.800092 AGAAACAAGCTCATATATCTTGGAGT 58.200 34.615 14.04 2.88 40.93 3.85
297 298 7.714377 AGAAACAAGCTCATATATCTTGGAGTG 59.286 37.037 14.04 3.58 40.93 3.51
298 299 5.862845 ACAAGCTCATATATCTTGGAGTGG 58.137 41.667 14.04 2.72 40.93 4.00
299 300 5.367937 ACAAGCTCATATATCTTGGAGTGGT 59.632 40.000 14.04 3.17 40.93 4.16
300 301 5.480642 AGCTCATATATCTTGGAGTGGTG 57.519 43.478 0.00 0.00 0.00 4.17
301 302 5.150715 AGCTCATATATCTTGGAGTGGTGA 58.849 41.667 0.00 0.00 0.00 4.02
302 303 5.011533 AGCTCATATATCTTGGAGTGGTGAC 59.988 44.000 0.00 0.00 0.00 3.67
303 304 5.011533 GCTCATATATCTTGGAGTGGTGACT 59.988 44.000 0.00 0.00 33.98 3.41
304 305 6.463614 GCTCATATATCTTGGAGTGGTGACTT 60.464 42.308 0.00 0.00 30.16 3.01
305 306 7.055667 TCATATATCTTGGAGTGGTGACTTC 57.944 40.000 0.00 0.00 30.16 3.01
306 307 6.841229 TCATATATCTTGGAGTGGTGACTTCT 59.159 38.462 0.00 0.00 30.16 2.85
307 308 8.004801 TCATATATCTTGGAGTGGTGACTTCTA 58.995 37.037 0.00 0.00 30.16 2.10
308 309 8.811017 CATATATCTTGGAGTGGTGACTTCTAT 58.189 37.037 0.00 0.00 30.16 1.98
309 310 7.682787 ATATCTTGGAGTGGTGACTTCTATT 57.317 36.000 0.00 0.00 30.16 1.73
310 311 5.407407 TCTTGGAGTGGTGACTTCTATTC 57.593 43.478 0.00 0.00 30.16 1.75
311 312 4.838423 TCTTGGAGTGGTGACTTCTATTCA 59.162 41.667 0.00 0.00 30.16 2.57
312 313 4.537135 TGGAGTGGTGACTTCTATTCAC 57.463 45.455 0.00 0.00 42.35 3.18
313 314 3.901222 TGGAGTGGTGACTTCTATTCACA 59.099 43.478 4.96 0.00 44.47 3.58
314 315 4.246458 GGAGTGGTGACTTCTATTCACAC 58.754 47.826 4.96 0.00 44.47 3.82
315 316 4.021016 GGAGTGGTGACTTCTATTCACACT 60.021 45.833 4.96 0.00 44.47 3.55
316 317 5.185249 GGAGTGGTGACTTCTATTCACACTA 59.815 44.000 4.96 0.00 44.47 2.74
317 318 6.127310 GGAGTGGTGACTTCTATTCACACTAT 60.127 42.308 4.96 0.00 44.47 2.12
318 319 7.068348 GGAGTGGTGACTTCTATTCACACTATA 59.932 40.741 4.96 0.00 44.47 1.31
319 320 8.001881 AGTGGTGACTTCTATTCACACTATAG 57.998 38.462 0.00 0.00 44.47 1.31
320 321 7.616150 AGTGGTGACTTCTATTCACACTATAGT 59.384 37.037 0.00 0.00 44.47 2.12
337 338 6.456501 ACTATAGTGATCCTTAACCGATTGC 58.543 40.000 4.10 0.00 0.00 3.56
338 339 3.627395 AGTGATCCTTAACCGATTGCA 57.373 42.857 0.00 0.00 0.00 4.08
339 340 4.156455 AGTGATCCTTAACCGATTGCAT 57.844 40.909 0.00 0.00 0.00 3.96
340 341 4.130118 AGTGATCCTTAACCGATTGCATC 58.870 43.478 0.00 0.00 0.00 3.91
341 342 4.130118 GTGATCCTTAACCGATTGCATCT 58.870 43.478 0.00 0.00 0.00 2.90
342 343 4.576463 GTGATCCTTAACCGATTGCATCTT 59.424 41.667 0.00 0.00 0.00 2.40
343 344 5.066505 GTGATCCTTAACCGATTGCATCTTT 59.933 40.000 0.00 0.00 0.00 2.52
344 345 5.296780 TGATCCTTAACCGATTGCATCTTTC 59.703 40.000 0.00 0.00 0.00 2.62
345 346 3.945285 TCCTTAACCGATTGCATCTTTCC 59.055 43.478 0.00 0.00 0.00 3.13
346 347 3.694072 CCTTAACCGATTGCATCTTTCCA 59.306 43.478 0.00 0.00 0.00 3.53
347 348 4.339247 CCTTAACCGATTGCATCTTTCCAT 59.661 41.667 0.00 0.00 0.00 3.41
348 349 5.163519 CCTTAACCGATTGCATCTTTCCATT 60.164 40.000 0.00 0.00 0.00 3.16
349 350 4.806640 AACCGATTGCATCTTTCCATTT 57.193 36.364 0.00 0.00 0.00 2.32
350 351 4.376340 ACCGATTGCATCTTTCCATTTC 57.624 40.909 0.00 0.00 0.00 2.17
351 352 3.763360 ACCGATTGCATCTTTCCATTTCA 59.237 39.130 0.00 0.00 0.00 2.69
352 353 4.220382 ACCGATTGCATCTTTCCATTTCAA 59.780 37.500 0.00 0.00 0.00 2.69
353 354 4.802039 CCGATTGCATCTTTCCATTTCAAG 59.198 41.667 0.00 0.00 0.00 3.02
354 355 5.393352 CCGATTGCATCTTTCCATTTCAAGA 60.393 40.000 0.00 0.00 33.55 3.02
355 356 6.094719 CGATTGCATCTTTCCATTTCAAGAA 58.905 36.000 0.00 0.00 32.76 2.52
356 357 6.252869 CGATTGCATCTTTCCATTTCAAGAAG 59.747 38.462 0.00 0.00 32.76 2.85
357 358 6.653526 TTGCATCTTTCCATTTCAAGAAGA 57.346 33.333 0.00 0.00 32.76 2.87
358 359 6.653526 TGCATCTTTCCATTTCAAGAAGAA 57.346 33.333 0.00 0.00 32.76 2.52
359 360 6.449698 TGCATCTTTCCATTTCAAGAAGAAC 58.550 36.000 0.00 0.00 35.56 3.01
360 361 6.266103 TGCATCTTTCCATTTCAAGAAGAACT 59.734 34.615 0.00 0.00 35.56 3.01
361 362 7.448161 TGCATCTTTCCATTTCAAGAAGAACTA 59.552 33.333 0.00 0.00 35.56 2.24
362 363 8.465201 GCATCTTTCCATTTCAAGAAGAACTAT 58.535 33.333 0.00 0.00 35.56 2.12
369 370 9.838339 TCCATTTCAAGAAGAACTATAATCCTC 57.162 33.333 0.00 0.00 35.56 3.71
370 371 9.844257 CCATTTCAAGAAGAACTATAATCCTCT 57.156 33.333 0.00 0.00 35.56 3.69
378 379 8.919145 AGAAGAACTATAATCCTCTACTTGTGG 58.081 37.037 0.00 0.00 0.00 4.17
379 380 8.840200 AAGAACTATAATCCTCTACTTGTGGA 57.160 34.615 0.00 0.00 41.86 4.02
380 381 8.840200 AGAACTATAATCCTCTACTTGTGGAA 57.160 34.615 0.00 0.00 41.10 3.53
381 382 9.440761 AGAACTATAATCCTCTACTTGTGGAAT 57.559 33.333 0.00 0.00 41.10 3.01
386 387 8.854614 ATAATCCTCTACTTGTGGAATAATGC 57.145 34.615 0.00 0.00 41.10 3.56
387 388 4.693283 TCCTCTACTTGTGGAATAATGCG 58.307 43.478 0.00 0.00 35.61 4.73
388 389 3.248602 CCTCTACTTGTGGAATAATGCGC 59.751 47.826 0.00 0.00 0.00 6.09
389 390 3.202906 TCTACTTGTGGAATAATGCGCC 58.797 45.455 4.18 0.00 0.00 6.53
390 391 0.732571 ACTTGTGGAATAATGCGCCG 59.267 50.000 4.18 0.00 0.00 6.46
391 392 0.732571 CTTGTGGAATAATGCGCCGT 59.267 50.000 4.18 0.00 0.00 5.68
392 393 0.730265 TTGTGGAATAATGCGCCGTC 59.270 50.000 4.18 0.00 0.00 4.79
393 394 0.391793 TGTGGAATAATGCGCCGTCA 60.392 50.000 4.18 0.00 0.00 4.35
394 395 0.730265 GTGGAATAATGCGCCGTCAA 59.270 50.000 4.18 0.00 0.00 3.18
395 396 1.131504 GTGGAATAATGCGCCGTCAAA 59.868 47.619 4.18 0.00 0.00 2.69
396 397 1.131504 TGGAATAATGCGCCGTCAAAC 59.868 47.619 4.18 0.00 0.00 2.93
397 398 1.533129 GGAATAATGCGCCGTCAAACC 60.533 52.381 4.18 0.00 0.00 3.27
398 399 1.400494 GAATAATGCGCCGTCAAACCT 59.600 47.619 4.18 0.00 0.00 3.50
399 400 2.319136 ATAATGCGCCGTCAAACCTA 57.681 45.000 4.18 0.00 0.00 3.08
400 401 1.647346 TAATGCGCCGTCAAACCTAG 58.353 50.000 4.18 0.00 0.00 3.02
401 402 0.321298 AATGCGCCGTCAAACCTAGT 60.321 50.000 4.18 0.00 0.00 2.57
402 403 0.321298 ATGCGCCGTCAAACCTAGTT 60.321 50.000 4.18 0.00 0.00 2.24
403 404 0.947180 TGCGCCGTCAAACCTAGTTC 60.947 55.000 4.18 0.00 0.00 3.01
404 405 0.947180 GCGCCGTCAAACCTAGTTCA 60.947 55.000 0.00 0.00 0.00 3.18
405 406 0.788391 CGCCGTCAAACCTAGTTCAC 59.212 55.000 0.00 0.00 0.00 3.18
406 407 1.604693 CGCCGTCAAACCTAGTTCACT 60.605 52.381 0.00 0.00 0.00 3.41
407 408 2.490991 GCCGTCAAACCTAGTTCACTT 58.509 47.619 0.00 0.00 0.00 3.16
408 409 2.223377 GCCGTCAAACCTAGTTCACTTG 59.777 50.000 0.00 0.00 0.00 3.16
409 410 2.223377 CCGTCAAACCTAGTTCACTTGC 59.777 50.000 0.00 0.00 0.00 4.01
410 411 2.869801 CGTCAAACCTAGTTCACTTGCA 59.130 45.455 0.00 0.00 0.00 4.08
411 412 3.059597 CGTCAAACCTAGTTCACTTGCAG 60.060 47.826 0.00 0.00 0.00 4.41
412 413 4.127171 GTCAAACCTAGTTCACTTGCAGA 58.873 43.478 0.00 0.00 0.00 4.26
413 414 4.212214 GTCAAACCTAGTTCACTTGCAGAG 59.788 45.833 0.00 0.00 0.00 3.35
414 415 2.464157 ACCTAGTTCACTTGCAGAGC 57.536 50.000 0.00 0.00 0.00 4.09
415 416 1.974236 ACCTAGTTCACTTGCAGAGCT 59.026 47.619 0.00 0.00 0.00 4.09
416 417 2.289320 ACCTAGTTCACTTGCAGAGCTG 60.289 50.000 0.00 0.00 0.00 4.24
427 428 3.786809 CAGAGCTGCAAACACATGG 57.213 52.632 1.02 0.00 0.00 3.66
428 429 1.241165 CAGAGCTGCAAACACATGGA 58.759 50.000 1.02 0.00 0.00 3.41
429 430 1.610038 CAGAGCTGCAAACACATGGAA 59.390 47.619 1.02 0.00 0.00 3.53
430 431 2.034939 CAGAGCTGCAAACACATGGAAA 59.965 45.455 1.02 0.00 0.00 3.13
431 432 2.035066 AGAGCTGCAAACACATGGAAAC 59.965 45.455 1.02 0.00 0.00 2.78
448 449 6.361768 TGGAAACAAACCACTAAAAACCTT 57.638 33.333 0.00 0.00 37.44 3.50
449 450 6.770542 TGGAAACAAACCACTAAAAACCTTT 58.229 32.000 0.00 0.00 37.44 3.11
450 451 6.874664 TGGAAACAAACCACTAAAAACCTTTC 59.125 34.615 0.00 0.00 37.44 2.62
451 452 6.874664 GGAAACAAACCACTAAAAACCTTTCA 59.125 34.615 0.00 0.00 0.00 2.69
452 453 7.551262 GGAAACAAACCACTAAAAACCTTTCAT 59.449 33.333 0.00 0.00 0.00 2.57
453 454 8.487313 AAACAAACCACTAAAAACCTTTCATC 57.513 30.769 0.00 0.00 0.00 2.92
454 455 7.176589 ACAAACCACTAAAAACCTTTCATCA 57.823 32.000 0.00 0.00 0.00 3.07
455 456 7.616313 ACAAACCACTAAAAACCTTTCATCAA 58.384 30.769 0.00 0.00 0.00 2.57
456 457 8.264347 ACAAACCACTAAAAACCTTTCATCAAT 58.736 29.630 0.00 0.00 0.00 2.57
457 458 8.550376 CAAACCACTAAAAACCTTTCATCAATG 58.450 33.333 0.00 0.00 0.00 2.82
458 459 6.758254 ACCACTAAAAACCTTTCATCAATGG 58.242 36.000 0.00 0.00 33.74 3.16
459 460 6.553100 ACCACTAAAAACCTTTCATCAATGGA 59.447 34.615 0.00 0.00 32.21 3.41
460 461 6.868339 CCACTAAAAACCTTTCATCAATGGAC 59.132 38.462 0.00 0.00 32.21 4.02
461 462 7.432869 CACTAAAAACCTTTCATCAATGGACA 58.567 34.615 0.00 0.00 32.21 4.02
462 463 7.382218 CACTAAAAACCTTTCATCAATGGACAC 59.618 37.037 0.00 0.00 32.21 3.67
463 464 6.484364 AAAAACCTTTCATCAATGGACACT 57.516 33.333 0.00 0.00 32.21 3.55
464 465 5.458041 AAACCTTTCATCAATGGACACTG 57.542 39.130 0.00 0.00 32.21 3.66
465 466 2.821969 ACCTTTCATCAATGGACACTGC 59.178 45.455 0.00 0.00 32.21 4.40
466 467 2.821378 CCTTTCATCAATGGACACTGCA 59.179 45.455 0.00 0.00 0.00 4.41
467 468 3.256383 CCTTTCATCAATGGACACTGCAA 59.744 43.478 0.00 0.00 0.00 4.08
468 469 3.921119 TTCATCAATGGACACTGCAAC 57.079 42.857 0.00 0.00 0.00 4.17
469 470 2.861274 TCATCAATGGACACTGCAACA 58.139 42.857 0.00 0.00 0.00 3.33
470 471 2.815503 TCATCAATGGACACTGCAACAG 59.184 45.455 0.00 0.00 37.52 3.16
471 472 2.636647 TCAATGGACACTGCAACAGA 57.363 45.000 0.78 0.00 35.18 3.41
472 473 3.144657 TCAATGGACACTGCAACAGAT 57.855 42.857 0.78 0.00 35.18 2.90
473 474 3.489355 TCAATGGACACTGCAACAGATT 58.511 40.909 0.78 0.00 35.18 2.40
474 475 3.503363 TCAATGGACACTGCAACAGATTC 59.497 43.478 0.78 0.00 35.18 2.52
475 476 1.896220 TGGACACTGCAACAGATTCC 58.104 50.000 0.78 6.90 36.88 3.01
476 477 1.142667 TGGACACTGCAACAGATTCCA 59.857 47.619 14.10 14.10 40.65 3.53
477 478 2.224843 TGGACACTGCAACAGATTCCAT 60.225 45.455 14.10 0.00 39.28 3.41
478 479 2.821969 GGACACTGCAACAGATTCCATT 59.178 45.455 0.78 0.00 36.59 3.16
479 480 4.009675 GGACACTGCAACAGATTCCATTA 58.990 43.478 0.78 0.00 36.59 1.90
480 481 4.095483 GGACACTGCAACAGATTCCATTAG 59.905 45.833 0.78 0.00 36.59 1.73
481 482 3.441572 ACACTGCAACAGATTCCATTAGC 59.558 43.478 0.78 0.00 35.18 3.09
482 483 3.441222 CACTGCAACAGATTCCATTAGCA 59.559 43.478 0.78 0.00 35.18 3.49
483 484 4.288670 CTGCAACAGATTCCATTAGCAG 57.711 45.455 0.00 0.00 41.64 4.24
484 485 3.689347 TGCAACAGATTCCATTAGCAGT 58.311 40.909 0.00 0.00 0.00 4.40
485 486 3.691118 TGCAACAGATTCCATTAGCAGTC 59.309 43.478 0.00 0.00 0.00 3.51
486 487 3.944015 GCAACAGATTCCATTAGCAGTCT 59.056 43.478 0.00 0.00 0.00 3.24
487 488 4.397417 GCAACAGATTCCATTAGCAGTCTT 59.603 41.667 0.00 0.00 0.00 3.01
488 489 5.105997 GCAACAGATTCCATTAGCAGTCTTT 60.106 40.000 0.00 0.00 0.00 2.52
489 490 6.320171 CAACAGATTCCATTAGCAGTCTTTG 58.680 40.000 0.00 0.00 0.00 2.77
490 491 5.564550 ACAGATTCCATTAGCAGTCTTTGT 58.435 37.500 0.00 0.00 0.00 2.83
491 492 5.645497 ACAGATTCCATTAGCAGTCTTTGTC 59.355 40.000 0.00 0.00 0.00 3.18
492 493 5.065731 CAGATTCCATTAGCAGTCTTTGTCC 59.934 44.000 0.00 0.00 0.00 4.02
493 494 4.365514 TTCCATTAGCAGTCTTTGTCCA 57.634 40.909 0.00 0.00 0.00 4.02
494 495 4.574674 TCCATTAGCAGTCTTTGTCCAT 57.425 40.909 0.00 0.00 0.00 3.41
495 496 4.922206 TCCATTAGCAGTCTTTGTCCATT 58.078 39.130 0.00 0.00 0.00 3.16
496 497 4.943705 TCCATTAGCAGTCTTTGTCCATTC 59.056 41.667 0.00 0.00 0.00 2.67
497 498 4.701651 CCATTAGCAGTCTTTGTCCATTCA 59.298 41.667 0.00 0.00 0.00 2.57
498 499 5.359009 CCATTAGCAGTCTTTGTCCATTCAT 59.641 40.000 0.00 0.00 0.00 2.57
499 500 6.127535 CCATTAGCAGTCTTTGTCCATTCATT 60.128 38.462 0.00 0.00 0.00 2.57
500 501 6.500684 TTAGCAGTCTTTGTCCATTCATTC 57.499 37.500 0.00 0.00 0.00 2.67
501 502 4.401022 AGCAGTCTTTGTCCATTCATTCA 58.599 39.130 0.00 0.00 0.00 2.57
502 503 5.014858 AGCAGTCTTTGTCCATTCATTCAT 58.985 37.500 0.00 0.00 0.00 2.57
503 504 5.125097 AGCAGTCTTTGTCCATTCATTCATC 59.875 40.000 0.00 0.00 0.00 2.92
504 505 5.125097 GCAGTCTTTGTCCATTCATTCATCT 59.875 40.000 0.00 0.00 0.00 2.90
505 506 6.552629 CAGTCTTTGTCCATTCATTCATCTG 58.447 40.000 0.00 0.00 0.00 2.90
506 507 5.651139 AGTCTTTGTCCATTCATTCATCTGG 59.349 40.000 0.00 0.00 0.00 3.86
507 508 5.416952 GTCTTTGTCCATTCATTCATCTGGT 59.583 40.000 0.00 0.00 0.00 4.00
508 509 6.599244 GTCTTTGTCCATTCATTCATCTGGTA 59.401 38.462 0.00 0.00 0.00 3.25
509 510 6.825213 TCTTTGTCCATTCATTCATCTGGTAG 59.175 38.462 0.00 0.00 0.00 3.18
510 511 5.698741 TGTCCATTCATTCATCTGGTAGT 57.301 39.130 0.00 0.00 0.00 2.73
511 512 5.674525 TGTCCATTCATTCATCTGGTAGTC 58.325 41.667 0.00 0.00 0.00 2.59
512 513 5.426509 TGTCCATTCATTCATCTGGTAGTCT 59.573 40.000 0.00 0.00 0.00 3.24
513 514 6.070021 TGTCCATTCATTCATCTGGTAGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
514 515 6.825721 GTCCATTCATTCATCTGGTAGTCTTT 59.174 38.462 0.00 0.00 0.00 2.52
515 516 6.825213 TCCATTCATTCATCTGGTAGTCTTTG 59.175 38.462 0.00 0.00 0.00 2.77
516 517 6.039047 CCATTCATTCATCTGGTAGTCTTTGG 59.961 42.308 0.00 0.00 0.00 3.28
517 518 5.102953 TCATTCATCTGGTAGTCTTTGGG 57.897 43.478 0.00 0.00 0.00 4.12
518 519 3.350219 TTCATCTGGTAGTCTTTGGGC 57.650 47.619 0.00 0.00 0.00 5.36
519 520 2.551270 TCATCTGGTAGTCTTTGGGCT 58.449 47.619 0.00 0.00 0.00 5.19
520 521 2.501723 TCATCTGGTAGTCTTTGGGCTC 59.498 50.000 0.00 0.00 0.00 4.70
521 522 1.276622 TCTGGTAGTCTTTGGGCTCC 58.723 55.000 0.00 0.00 0.00 4.70
522 523 0.984230 CTGGTAGTCTTTGGGCTCCA 59.016 55.000 0.00 0.00 0.00 3.86
523 524 1.351017 CTGGTAGTCTTTGGGCTCCAA 59.649 52.381 2.84 2.84 42.29 3.53
525 526 2.160205 GGTAGTCTTTGGGCTCCAAAC 58.840 52.381 13.46 7.65 46.92 2.93
526 527 2.488347 GGTAGTCTTTGGGCTCCAAACA 60.488 50.000 13.46 3.59 46.92 2.83
527 528 1.692411 AGTCTTTGGGCTCCAAACAC 58.308 50.000 13.46 13.47 46.92 3.32
528 529 1.064017 AGTCTTTGGGCTCCAAACACA 60.064 47.619 19.49 6.22 46.92 3.72
529 530 1.754226 GTCTTTGGGCTCCAAACACAA 59.246 47.619 13.46 0.00 46.92 3.33
530 531 2.031120 TCTTTGGGCTCCAAACACAAG 58.969 47.619 13.46 5.98 46.92 3.16
531 532 2.031120 CTTTGGGCTCCAAACACAAGA 58.969 47.619 13.46 0.00 46.92 3.02
532 533 1.398692 TTGGGCTCCAAACACAAGAC 58.601 50.000 4.37 0.00 40.92 3.01
533 534 0.257328 TGGGCTCCAAACACAAGACA 59.743 50.000 0.00 0.00 0.00 3.41
534 535 1.341482 TGGGCTCCAAACACAAGACAA 60.341 47.619 0.00 0.00 0.00 3.18
535 536 1.067060 GGGCTCCAAACACAAGACAAC 59.933 52.381 0.00 0.00 0.00 3.32
536 537 1.067060 GGCTCCAAACACAAGACAACC 59.933 52.381 0.00 0.00 0.00 3.77
537 538 1.748493 GCTCCAAACACAAGACAACCA 59.252 47.619 0.00 0.00 0.00 3.67
538 539 2.165437 GCTCCAAACACAAGACAACCAA 59.835 45.455 0.00 0.00 0.00 3.67
539 540 3.769536 CTCCAAACACAAGACAACCAAC 58.230 45.455 0.00 0.00 0.00 3.77
540 541 3.157881 TCCAAACACAAGACAACCAACA 58.842 40.909 0.00 0.00 0.00 3.33
541 542 3.766591 TCCAAACACAAGACAACCAACAT 59.233 39.130 0.00 0.00 0.00 2.71
542 543 4.950475 TCCAAACACAAGACAACCAACATA 59.050 37.500 0.00 0.00 0.00 2.29
543 544 5.419155 TCCAAACACAAGACAACCAACATAA 59.581 36.000 0.00 0.00 0.00 1.90
544 545 6.097554 TCCAAACACAAGACAACCAACATAAT 59.902 34.615 0.00 0.00 0.00 1.28
545 546 6.760770 CCAAACACAAGACAACCAACATAATT 59.239 34.615 0.00 0.00 0.00 1.40
546 547 7.923344 CCAAACACAAGACAACCAACATAATTA 59.077 33.333 0.00 0.00 0.00 1.40
547 548 9.474920 CAAACACAAGACAACCAACATAATTAT 57.525 29.630 0.00 0.00 0.00 1.28
589 590 6.677781 ACATGATTTATTTCAGTACCCACG 57.322 37.500 0.00 0.00 0.00 4.94
590 591 6.411376 ACATGATTTATTTCAGTACCCACGA 58.589 36.000 0.00 0.00 0.00 4.35
591 592 6.315393 ACATGATTTATTTCAGTACCCACGAC 59.685 38.462 0.00 0.00 0.00 4.34
592 593 5.180271 TGATTTATTTCAGTACCCACGACC 58.820 41.667 0.00 0.00 0.00 4.79
593 594 3.615224 TTATTTCAGTACCCACGACCC 57.385 47.619 0.00 0.00 0.00 4.46
594 595 1.354101 ATTTCAGTACCCACGACCCA 58.646 50.000 0.00 0.00 0.00 4.51
595 596 1.129917 TTTCAGTACCCACGACCCAA 58.870 50.000 0.00 0.00 0.00 4.12
596 597 1.129917 TTCAGTACCCACGACCCAAA 58.870 50.000 0.00 0.00 0.00 3.28
597 598 0.393820 TCAGTACCCACGACCCAAAC 59.606 55.000 0.00 0.00 0.00 2.93
598 599 0.947180 CAGTACCCACGACCCAAACG 60.947 60.000 0.00 0.00 0.00 3.60
599 600 2.030862 TACCCACGACCCAAACGC 59.969 61.111 0.00 0.00 0.00 4.84
600 601 3.534054 TACCCACGACCCAAACGCC 62.534 63.158 0.00 0.00 0.00 5.68
602 603 4.973055 CCACGACCCAAACGCCGA 62.973 66.667 0.00 0.00 0.00 5.54
603 604 3.411351 CACGACCCAAACGCCGAG 61.411 66.667 0.00 0.00 0.00 4.63
604 605 3.608662 ACGACCCAAACGCCGAGA 61.609 61.111 0.00 0.00 0.00 4.04
605 606 2.125673 CGACCCAAACGCCGAGAT 60.126 61.111 0.00 0.00 0.00 2.75
606 607 2.452813 CGACCCAAACGCCGAGATG 61.453 63.158 0.00 0.00 0.00 2.90
607 608 1.079405 GACCCAAACGCCGAGATGA 60.079 57.895 0.00 0.00 0.00 2.92
608 609 0.672401 GACCCAAACGCCGAGATGAA 60.672 55.000 0.00 0.00 0.00 2.57
609 610 0.953960 ACCCAAACGCCGAGATGAAC 60.954 55.000 0.00 0.00 0.00 3.18
610 611 0.953471 CCCAAACGCCGAGATGAACA 60.953 55.000 0.00 0.00 0.00 3.18
611 612 0.165944 CCAAACGCCGAGATGAACAC 59.834 55.000 0.00 0.00 0.00 3.32
612 613 0.865111 CAAACGCCGAGATGAACACA 59.135 50.000 0.00 0.00 0.00 3.72
613 614 1.464608 CAAACGCCGAGATGAACACAT 59.535 47.619 0.00 0.00 0.00 3.21
614 615 1.078709 AACGCCGAGATGAACACATG 58.921 50.000 0.00 0.00 0.00 3.21
615 616 1.349627 CGCCGAGATGAACACATGC 59.650 57.895 0.00 0.00 0.00 4.06
616 617 1.360931 CGCCGAGATGAACACATGCA 61.361 55.000 0.00 0.00 0.00 3.96
617 618 1.019673 GCCGAGATGAACACATGCAT 58.980 50.000 0.00 0.00 0.00 3.96
618 619 2.212652 GCCGAGATGAACACATGCATA 58.787 47.619 0.00 0.00 0.00 3.14
619 620 2.032549 GCCGAGATGAACACATGCATAC 60.033 50.000 0.00 0.00 0.00 2.39
620 621 2.219445 CCGAGATGAACACATGCATACG 59.781 50.000 0.00 0.00 0.00 3.06
621 622 2.347939 CGAGATGAACACATGCATACGC 60.348 50.000 0.00 0.00 39.24 4.42
659 660 7.836183 ACAGTTTTTATGAAGGCTGGAATCTAT 59.164 33.333 0.00 0.00 0.00 1.98
775 776 1.832167 CCACCAAACACCACCCCAG 60.832 63.158 0.00 0.00 0.00 4.45
824 825 2.690881 CCCGGAATCCACCCCTGA 60.691 66.667 0.73 0.00 0.00 3.86
1086 1087 2.812011 ACACGGTAAGAGATTTGTTGGC 59.188 45.455 0.00 0.00 0.00 4.52
1207 1208 1.006337 TGCAAAGATGTTTGGGCGC 60.006 52.632 16.29 0.00 42.99 6.53
1208 1209 1.290009 GCAAAGATGTTTGGGCGCT 59.710 52.632 16.29 0.00 42.99 5.92
1209 1210 0.733909 GCAAAGATGTTTGGGCGCTC 60.734 55.000 16.29 2.47 42.99 5.03
1210 1211 0.597568 CAAAGATGTTTGGGCGCTCA 59.402 50.000 5.44 5.44 39.63 4.26
1233 1234 3.509442 TCACCCTGCTGAAAATGGAAAT 58.491 40.909 0.00 0.00 0.00 2.17
2040 2041 6.578944 ACATTTGCACCGATACTAGAATACA 58.421 36.000 0.00 0.00 0.00 2.29
2063 2064 3.981416 GGCCAGAAATCGAAAACAAAGTC 59.019 43.478 0.00 0.00 0.00 3.01
2065 2066 5.048991 GGCCAGAAATCGAAAACAAAGTCTA 60.049 40.000 0.00 0.00 0.00 2.59
2066 2067 5.851703 GCCAGAAATCGAAAACAAAGTCTAC 59.148 40.000 0.00 0.00 0.00 2.59
2079 2080 5.133221 ACAAAGTCTACAGCAACAAGGAAT 58.867 37.500 0.00 0.00 0.00 3.01
2399 2400 5.495640 CTGCAAGAAGGGAGAGTAGAATTT 58.504 41.667 0.00 0.00 34.07 1.82
2803 2805 5.805728 TCAAGTTCCTCTTCAGATAAACCC 58.194 41.667 0.00 0.00 33.63 4.11
2831 2833 6.580788 CACTATGATTCTGTCACAGATTCCT 58.419 40.000 21.62 16.24 40.39 3.36
3140 3163 2.492881 TGTTCATATTGGCAAGCACAGG 59.507 45.455 5.96 0.00 0.00 4.00
3150 3173 1.600916 AAGCACAGGAAGTTCGCCC 60.601 57.895 0.00 0.00 0.00 6.13
3204 3228 1.329906 GCATGTCACTGCAGCTCATAC 59.670 52.381 15.27 7.18 41.87 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.627395 TTCCATATGTTTCGACAACAGTTT 57.373 33.333 15.10 5.39 33.18 2.66
1 2 6.817765 ATTCCATATGTTTCGACAACAGTT 57.182 33.333 15.10 5.90 33.18 3.16
2 3 6.817765 AATTCCATATGTTTCGACAACAGT 57.182 33.333 15.10 7.08 33.18 3.55
47 48 0.537188 TTCCTCATGGCGAGACCTTC 59.463 55.000 0.00 0.00 45.45 3.46
48 49 0.539051 CTTCCTCATGGCGAGACCTT 59.461 55.000 0.00 0.00 45.45 3.50
49 50 1.965754 GCTTCCTCATGGCGAGACCT 61.966 60.000 0.00 0.00 45.45 3.85
50 51 1.522580 GCTTCCTCATGGCGAGACC 60.523 63.158 0.00 0.00 45.45 3.85
51 52 1.522580 GGCTTCCTCATGGCGAGAC 60.523 63.158 0.00 0.00 45.45 3.36
52 53 2.903357 GGCTTCCTCATGGCGAGA 59.097 61.111 0.00 0.00 45.45 4.04
56 57 1.895707 CCATCGGCTTCCTCATGGC 60.896 63.158 0.00 0.00 29.04 4.40
57 58 0.816825 CACCATCGGCTTCCTCATGG 60.817 60.000 0.00 8.39 37.53 3.66
58 59 0.178767 TCACCATCGGCTTCCTCATG 59.821 55.000 0.00 0.00 0.00 3.07
59 60 0.911769 TTCACCATCGGCTTCCTCAT 59.088 50.000 0.00 0.00 0.00 2.90
60 61 0.690192 TTTCACCATCGGCTTCCTCA 59.310 50.000 0.00 0.00 0.00 3.86
61 62 1.373570 CTTTCACCATCGGCTTCCTC 58.626 55.000 0.00 0.00 0.00 3.71
62 63 0.678048 GCTTTCACCATCGGCTTCCT 60.678 55.000 0.00 0.00 0.00 3.36
63 64 1.803289 GCTTTCACCATCGGCTTCC 59.197 57.895 0.00 0.00 0.00 3.46
64 65 1.425428 CGCTTTCACCATCGGCTTC 59.575 57.895 0.00 0.00 0.00 3.86
65 66 2.040544 CCGCTTTCACCATCGGCTT 61.041 57.895 0.00 0.00 35.20 4.35
66 67 2.257409 ATCCGCTTTCACCATCGGCT 62.257 55.000 0.00 0.00 41.49 5.52
67 68 1.776034 GATCCGCTTTCACCATCGGC 61.776 60.000 0.00 0.00 41.49 5.54
68 69 0.461870 TGATCCGCTTTCACCATCGG 60.462 55.000 0.00 0.00 42.96 4.18
69 70 1.528586 GATGATCCGCTTTCACCATCG 59.471 52.381 0.00 0.00 0.00 3.84
70 71 2.564771 TGATGATCCGCTTTCACCATC 58.435 47.619 0.00 0.00 0.00 3.51
71 72 2.715749 TGATGATCCGCTTTCACCAT 57.284 45.000 0.00 0.00 0.00 3.55
72 73 2.488204 TTGATGATCCGCTTTCACCA 57.512 45.000 0.00 0.00 0.00 4.17
73 74 2.945008 TGATTGATGATCCGCTTTCACC 59.055 45.455 0.00 0.00 33.60 4.02
74 75 4.095483 ACTTGATTGATGATCCGCTTTCAC 59.905 41.667 0.00 0.00 33.60 3.18
75 76 4.264253 ACTTGATTGATGATCCGCTTTCA 58.736 39.130 0.00 0.00 33.60 2.69
76 77 4.889832 ACTTGATTGATGATCCGCTTTC 57.110 40.909 0.00 0.00 33.60 2.62
77 78 6.150976 TGTTAACTTGATTGATGATCCGCTTT 59.849 34.615 7.22 0.00 33.60 3.51
78 79 5.647658 TGTTAACTTGATTGATGATCCGCTT 59.352 36.000 7.22 0.00 33.60 4.68
79 80 5.185454 TGTTAACTTGATTGATGATCCGCT 58.815 37.500 7.22 0.00 33.60 5.52
80 81 5.065218 ACTGTTAACTTGATTGATGATCCGC 59.935 40.000 7.22 0.00 33.60 5.54
81 82 6.668541 ACTGTTAACTTGATTGATGATCCG 57.331 37.500 7.22 0.00 33.60 4.18
82 83 8.514594 TCAAACTGTTAACTTGATTGATGATCC 58.485 33.333 7.22 0.00 33.60 3.36
83 84 9.552114 CTCAAACTGTTAACTTGATTGATGATC 57.448 33.333 17.61 0.00 35.21 2.92
84 85 8.517878 CCTCAAACTGTTAACTTGATTGATGAT 58.482 33.333 17.61 0.00 0.00 2.45
85 86 7.040478 CCCTCAAACTGTTAACTTGATTGATGA 60.040 37.037 17.61 8.00 0.00 2.92
86 87 7.040478 TCCCTCAAACTGTTAACTTGATTGATG 60.040 37.037 17.61 15.64 0.00 3.07
87 88 7.004086 TCCCTCAAACTGTTAACTTGATTGAT 58.996 34.615 17.61 0.00 0.00 2.57
88 89 6.361433 TCCCTCAAACTGTTAACTTGATTGA 58.639 36.000 16.90 16.90 0.00 2.57
89 90 6.633500 TCCCTCAAACTGTTAACTTGATTG 57.367 37.500 7.22 10.51 0.00 2.67
90 91 8.934023 TTATCCCTCAAACTGTTAACTTGATT 57.066 30.769 7.22 0.00 0.00 2.57
91 92 8.934023 TTTATCCCTCAAACTGTTAACTTGAT 57.066 30.769 7.22 0.00 0.00 2.57
92 93 8.626526 GTTTTATCCCTCAAACTGTTAACTTGA 58.373 33.333 7.22 7.75 31.33 3.02
93 94 8.630037 AGTTTTATCCCTCAAACTGTTAACTTG 58.370 33.333 7.22 3.57 40.87 3.16
94 95 8.762481 AGTTTTATCCCTCAAACTGTTAACTT 57.238 30.769 7.22 0.00 40.87 2.66
95 96 8.762481 AAGTTTTATCCCTCAAACTGTTAACT 57.238 30.769 7.22 0.00 41.42 2.24
96 97 9.811995 AAAAGTTTTATCCCTCAAACTGTTAAC 57.188 29.630 0.00 0.00 41.42 2.01
154 155 9.778741 ACCATATCGTATGATCTTTGTTTATGT 57.221 29.630 0.00 0.00 35.99 2.29
156 157 9.996554 TGACCATATCGTATGATCTTTGTTTAT 57.003 29.630 0.00 0.00 35.99 1.40
157 158 9.996554 ATGACCATATCGTATGATCTTTGTTTA 57.003 29.630 0.00 0.00 35.99 2.01
158 159 8.777413 CATGACCATATCGTATGATCTTTGTTT 58.223 33.333 0.00 0.00 35.99 2.83
159 160 8.150296 TCATGACCATATCGTATGATCTTTGTT 58.850 33.333 0.00 0.00 35.99 2.83
160 161 7.670364 TCATGACCATATCGTATGATCTTTGT 58.330 34.615 0.00 0.00 35.99 2.83
161 162 8.031277 TCTCATGACCATATCGTATGATCTTTG 58.969 37.037 0.00 0.00 35.99 2.77
162 163 8.127150 TCTCATGACCATATCGTATGATCTTT 57.873 34.615 0.00 0.00 35.99 2.52
163 164 7.709149 TCTCATGACCATATCGTATGATCTT 57.291 36.000 0.00 0.00 35.99 2.40
164 165 7.894753 ATCTCATGACCATATCGTATGATCT 57.105 36.000 0.00 0.00 35.99 2.75
165 166 7.978414 ACAATCTCATGACCATATCGTATGATC 59.022 37.037 0.00 0.00 35.99 2.92
166 167 7.845037 ACAATCTCATGACCATATCGTATGAT 58.155 34.615 2.37 2.37 38.67 2.45
167 168 7.232118 ACAATCTCATGACCATATCGTATGA 57.768 36.000 0.00 0.00 0.00 2.15
168 169 9.242477 GATACAATCTCATGACCATATCGTATG 57.758 37.037 0.00 0.00 0.00 2.39
169 170 8.971073 TGATACAATCTCATGACCATATCGTAT 58.029 33.333 0.00 0.00 0.00 3.06
170 171 8.348285 TGATACAATCTCATGACCATATCGTA 57.652 34.615 0.00 0.00 0.00 3.43
171 172 7.232118 TGATACAATCTCATGACCATATCGT 57.768 36.000 0.00 0.00 0.00 3.73
172 173 8.196103 AGATGATACAATCTCATGACCATATCG 58.804 37.037 0.00 0.00 33.56 2.92
184 185 6.012658 AGAGCTTCGAGATGATACAATCTC 57.987 41.667 4.45 4.45 46.14 2.75
185 186 6.012658 GAGAGCTTCGAGATGATACAATCT 57.987 41.667 0.00 0.00 39.66 2.40
205 206 5.534278 AGCATGATTACTCTCTGAATCGAGA 59.466 40.000 0.00 5.12 37.69 4.04
206 207 5.630264 CAGCATGATTACTCTCTGAATCGAG 59.370 44.000 0.00 0.00 39.69 4.04
207 208 5.068329 ACAGCATGATTACTCTCTGAATCGA 59.932 40.000 0.00 0.00 39.69 3.59
208 209 5.288015 ACAGCATGATTACTCTCTGAATCG 58.712 41.667 0.00 0.00 39.69 3.34
209 210 8.830201 ATTACAGCATGATTACTCTCTGAATC 57.170 34.615 0.00 0.00 39.69 2.52
210 211 9.624373 AAATTACAGCATGATTACTCTCTGAAT 57.376 29.630 0.00 0.00 39.69 2.57
211 212 9.453572 AAAATTACAGCATGATTACTCTCTGAA 57.546 29.630 0.00 0.00 39.69 3.02
212 213 8.886719 CAAAATTACAGCATGATTACTCTCTGA 58.113 33.333 0.00 0.00 39.69 3.27
213 214 8.886719 TCAAAATTACAGCATGATTACTCTCTG 58.113 33.333 0.00 0.00 39.69 3.35
214 215 8.887717 GTCAAAATTACAGCATGATTACTCTCT 58.112 33.333 0.00 0.00 39.69 3.10
215 216 8.668353 TGTCAAAATTACAGCATGATTACTCTC 58.332 33.333 0.00 0.00 39.69 3.20
216 217 8.565896 TGTCAAAATTACAGCATGATTACTCT 57.434 30.769 0.00 0.00 39.69 3.24
221 222 9.793252 GTCTTATGTCAAAATTACAGCATGATT 57.207 29.630 0.00 0.00 39.69 2.57
222 223 8.959548 TGTCTTATGTCAAAATTACAGCATGAT 58.040 29.630 0.00 0.00 39.69 2.45
223 224 8.334263 TGTCTTATGTCAAAATTACAGCATGA 57.666 30.769 0.00 0.00 39.69 3.07
224 225 8.969121 TTGTCTTATGTCAAAATTACAGCATG 57.031 30.769 0.00 0.00 46.00 4.06
226 227 9.409312 CATTTGTCTTATGTCAAAATTACAGCA 57.591 29.630 5.41 0.00 35.56 4.41
227 228 9.410556 ACATTTGTCTTATGTCAAAATTACAGC 57.589 29.630 5.41 0.00 35.56 4.40
277 278 5.604231 TCACCACTCCAAGATATATGAGCTT 59.396 40.000 0.00 0.00 32.68 3.74
278 279 5.011533 GTCACCACTCCAAGATATATGAGCT 59.988 44.000 0.00 0.00 0.00 4.09
279 280 5.011533 AGTCACCACTCCAAGATATATGAGC 59.988 44.000 0.00 0.00 0.00 4.26
280 281 6.662865 AGTCACCACTCCAAGATATATGAG 57.337 41.667 0.00 0.00 0.00 2.90
281 282 6.841229 AGAAGTCACCACTCCAAGATATATGA 59.159 38.462 0.00 0.00 29.93 2.15
282 283 7.060383 AGAAGTCACCACTCCAAGATATATG 57.940 40.000 0.00 0.00 29.93 1.78
283 284 8.964533 ATAGAAGTCACCACTCCAAGATATAT 57.035 34.615 0.00 0.00 29.93 0.86
284 285 8.783660 AATAGAAGTCACCACTCCAAGATATA 57.216 34.615 0.00 0.00 29.93 0.86
285 286 7.345653 TGAATAGAAGTCACCACTCCAAGATAT 59.654 37.037 0.00 0.00 29.93 1.63
286 287 6.667848 TGAATAGAAGTCACCACTCCAAGATA 59.332 38.462 0.00 0.00 29.93 1.98
287 288 5.485353 TGAATAGAAGTCACCACTCCAAGAT 59.515 40.000 0.00 0.00 29.93 2.40
288 289 4.838423 TGAATAGAAGTCACCACTCCAAGA 59.162 41.667 0.00 0.00 29.93 3.02
289 290 4.932200 GTGAATAGAAGTCACCACTCCAAG 59.068 45.833 0.00 0.00 39.62 3.61
290 291 4.346709 TGTGAATAGAAGTCACCACTCCAA 59.653 41.667 5.19 0.00 43.95 3.53
291 292 3.901222 TGTGAATAGAAGTCACCACTCCA 59.099 43.478 5.19 0.00 43.95 3.86
292 293 4.021016 AGTGTGAATAGAAGTCACCACTCC 60.021 45.833 5.19 0.00 43.95 3.85
293 294 5.140747 AGTGTGAATAGAAGTCACCACTC 57.859 43.478 5.19 0.00 43.95 3.51
294 295 6.859112 ATAGTGTGAATAGAAGTCACCACT 57.141 37.500 5.19 10.02 43.95 4.00
295 296 7.702772 CACTATAGTGTGAATAGAAGTCACCAC 59.297 40.741 22.48 4.24 43.95 4.16
296 297 7.614192 TCACTATAGTGTGAATAGAAGTCACCA 59.386 37.037 27.83 4.17 43.95 4.17
297 298 7.997482 TCACTATAGTGTGAATAGAAGTCACC 58.003 38.462 27.83 0.00 43.95 4.02
310 311 6.387041 TCGGTTAAGGATCACTATAGTGTG 57.613 41.667 27.83 9.04 45.76 3.82
311 312 7.434492 CAATCGGTTAAGGATCACTATAGTGT 58.566 38.462 27.83 17.40 45.76 3.55
312 313 6.366332 GCAATCGGTTAAGGATCACTATAGTG 59.634 42.308 24.37 24.37 46.91 2.74
313 314 6.041637 TGCAATCGGTTAAGGATCACTATAGT 59.958 38.462 0.00 0.00 0.00 2.12
314 315 6.455647 TGCAATCGGTTAAGGATCACTATAG 58.544 40.000 0.00 0.00 0.00 1.31
315 316 6.413783 TGCAATCGGTTAAGGATCACTATA 57.586 37.500 0.00 0.00 0.00 1.31
316 317 5.290493 TGCAATCGGTTAAGGATCACTAT 57.710 39.130 0.00 0.00 0.00 2.12
317 318 4.746535 TGCAATCGGTTAAGGATCACTA 57.253 40.909 0.00 0.00 0.00 2.74
318 319 3.627395 TGCAATCGGTTAAGGATCACT 57.373 42.857 0.00 0.00 0.00 3.41
319 320 4.474226 GATGCAATCGGTTAAGGATCAC 57.526 45.455 0.00 0.00 31.13 3.06
332 333 7.318141 TCTTCTTGAAATGGAAAGATGCAATC 58.682 34.615 0.00 0.00 46.04 2.67
333 334 7.235935 TCTTCTTGAAATGGAAAGATGCAAT 57.764 32.000 0.00 0.00 32.65 3.56
334 335 6.653526 TCTTCTTGAAATGGAAAGATGCAA 57.346 33.333 0.00 0.00 32.65 4.08
335 336 6.266103 AGTTCTTCTTGAAATGGAAAGATGCA 59.734 34.615 0.00 0.00 36.30 3.96
336 337 6.685657 AGTTCTTCTTGAAATGGAAAGATGC 58.314 36.000 0.00 0.00 36.30 3.91
343 344 9.838339 GAGGATTATAGTTCTTCTTGAAATGGA 57.162 33.333 0.00 0.00 36.30 3.41
344 345 9.844257 AGAGGATTATAGTTCTTCTTGAAATGG 57.156 33.333 0.00 0.00 36.30 3.16
352 353 8.919145 CCACAAGTAGAGGATTATAGTTCTTCT 58.081 37.037 5.23 5.23 34.37 2.85
353 354 8.915036 TCCACAAGTAGAGGATTATAGTTCTTC 58.085 37.037 0.00 0.00 31.52 2.87
354 355 8.840200 TCCACAAGTAGAGGATTATAGTTCTT 57.160 34.615 0.00 0.00 31.52 2.52
355 356 8.840200 TTCCACAAGTAGAGGATTATAGTTCT 57.160 34.615 0.00 0.00 36.83 3.01
360 361 9.944376 GCATTATTCCACAAGTAGAGGATTATA 57.056 33.333 0.00 0.00 36.83 0.98
361 362 7.604164 CGCATTATTCCACAAGTAGAGGATTAT 59.396 37.037 0.00 0.00 36.83 1.28
362 363 6.929049 CGCATTATTCCACAAGTAGAGGATTA 59.071 38.462 0.00 0.00 36.83 1.75
363 364 5.760253 CGCATTATTCCACAAGTAGAGGATT 59.240 40.000 0.00 0.00 36.83 3.01
364 365 5.300752 CGCATTATTCCACAAGTAGAGGAT 58.699 41.667 0.00 0.00 36.83 3.24
365 366 4.693283 CGCATTATTCCACAAGTAGAGGA 58.307 43.478 0.00 0.00 34.98 3.71
366 367 3.248602 GCGCATTATTCCACAAGTAGAGG 59.751 47.826 0.30 0.00 0.00 3.69
367 368 3.248602 GGCGCATTATTCCACAAGTAGAG 59.751 47.826 10.83 0.00 0.00 2.43
368 369 3.202906 GGCGCATTATTCCACAAGTAGA 58.797 45.455 10.83 0.00 0.00 2.59
369 370 2.032894 CGGCGCATTATTCCACAAGTAG 60.033 50.000 10.83 0.00 0.00 2.57
370 371 1.937223 CGGCGCATTATTCCACAAGTA 59.063 47.619 10.83 0.00 0.00 2.24
371 372 0.732571 CGGCGCATTATTCCACAAGT 59.267 50.000 10.83 0.00 0.00 3.16
372 373 0.732571 ACGGCGCATTATTCCACAAG 59.267 50.000 10.83 0.00 0.00 3.16
373 374 0.730265 GACGGCGCATTATTCCACAA 59.270 50.000 10.83 0.00 0.00 3.33
374 375 0.391793 TGACGGCGCATTATTCCACA 60.392 50.000 10.83 0.00 0.00 4.17
375 376 0.730265 TTGACGGCGCATTATTCCAC 59.270 50.000 10.83 0.00 0.00 4.02
376 377 1.131504 GTTTGACGGCGCATTATTCCA 59.868 47.619 10.83 0.00 0.00 3.53
377 378 1.533129 GGTTTGACGGCGCATTATTCC 60.533 52.381 10.83 0.00 0.00 3.01
378 379 1.400494 AGGTTTGACGGCGCATTATTC 59.600 47.619 10.83 0.00 0.00 1.75
379 380 1.459450 AGGTTTGACGGCGCATTATT 58.541 45.000 10.83 0.00 0.00 1.40
380 381 2.210116 CTAGGTTTGACGGCGCATTAT 58.790 47.619 10.83 0.00 0.00 1.28
381 382 1.066716 ACTAGGTTTGACGGCGCATTA 60.067 47.619 10.83 0.00 0.00 1.90
382 383 0.321298 ACTAGGTTTGACGGCGCATT 60.321 50.000 10.83 0.00 0.00 3.56
383 384 0.321298 AACTAGGTTTGACGGCGCAT 60.321 50.000 10.83 0.00 0.00 4.73
384 385 0.947180 GAACTAGGTTTGACGGCGCA 60.947 55.000 10.83 2.81 0.00 6.09
385 386 0.947180 TGAACTAGGTTTGACGGCGC 60.947 55.000 6.90 0.00 0.00 6.53
386 387 0.788391 GTGAACTAGGTTTGACGGCG 59.212 55.000 4.80 4.80 0.00 6.46
387 388 2.165319 AGTGAACTAGGTTTGACGGC 57.835 50.000 0.00 0.00 0.00 5.68
388 389 2.223377 GCAAGTGAACTAGGTTTGACGG 59.777 50.000 0.00 0.00 0.00 4.79
389 390 2.869801 TGCAAGTGAACTAGGTTTGACG 59.130 45.455 0.00 0.00 0.00 4.35
390 391 4.127171 TCTGCAAGTGAACTAGGTTTGAC 58.873 43.478 0.00 0.00 33.76 3.18
391 392 4.380531 CTCTGCAAGTGAACTAGGTTTGA 58.619 43.478 0.00 0.00 33.76 2.69
392 393 3.058639 GCTCTGCAAGTGAACTAGGTTTG 60.059 47.826 0.00 0.00 33.76 2.93
393 394 3.142174 GCTCTGCAAGTGAACTAGGTTT 58.858 45.455 0.00 0.00 33.76 3.27
394 395 2.370189 AGCTCTGCAAGTGAACTAGGTT 59.630 45.455 0.00 0.00 33.76 3.50
395 396 1.974236 AGCTCTGCAAGTGAACTAGGT 59.026 47.619 0.00 0.00 33.76 3.08
396 397 2.344950 CAGCTCTGCAAGTGAACTAGG 58.655 52.381 0.00 0.00 33.76 3.02
409 410 1.241165 TCCATGTGTTTGCAGCTCTG 58.759 50.000 0.00 0.00 0.00 3.35
410 411 1.985473 TTCCATGTGTTTGCAGCTCT 58.015 45.000 0.00 0.00 0.00 4.09
411 412 2.223782 TGTTTCCATGTGTTTGCAGCTC 60.224 45.455 0.00 0.00 0.00 4.09
412 413 1.755959 TGTTTCCATGTGTTTGCAGCT 59.244 42.857 0.00 0.00 0.00 4.24
413 414 2.222007 TGTTTCCATGTGTTTGCAGC 57.778 45.000 0.00 0.00 0.00 5.25
414 415 3.309410 GGTTTGTTTCCATGTGTTTGCAG 59.691 43.478 0.00 0.00 0.00 4.41
415 416 3.265791 GGTTTGTTTCCATGTGTTTGCA 58.734 40.909 0.00 0.00 0.00 4.08
416 417 3.063316 GTGGTTTGTTTCCATGTGTTTGC 59.937 43.478 0.00 0.00 37.30 3.68
417 418 4.502962 AGTGGTTTGTTTCCATGTGTTTG 58.497 39.130 0.00 0.00 37.30 2.93
418 419 4.817318 AGTGGTTTGTTTCCATGTGTTT 57.183 36.364 0.00 0.00 37.30 2.83
419 420 5.923733 TTAGTGGTTTGTTTCCATGTGTT 57.076 34.783 0.00 0.00 37.30 3.32
420 421 5.923733 TTTAGTGGTTTGTTTCCATGTGT 57.076 34.783 0.00 0.00 37.30 3.72
421 422 6.036626 GGTTTTTAGTGGTTTGTTTCCATGTG 59.963 38.462 0.00 0.00 37.30 3.21
422 423 6.070481 AGGTTTTTAGTGGTTTGTTTCCATGT 60.070 34.615 0.00 0.00 37.30 3.21
423 424 6.345298 AGGTTTTTAGTGGTTTGTTTCCATG 58.655 36.000 0.00 0.00 37.30 3.66
424 425 6.553953 AGGTTTTTAGTGGTTTGTTTCCAT 57.446 33.333 0.00 0.00 37.30 3.41
425 426 6.361768 AAGGTTTTTAGTGGTTTGTTTCCA 57.638 33.333 0.00 0.00 0.00 3.53
426 427 6.874664 TGAAAGGTTTTTAGTGGTTTGTTTCC 59.125 34.615 0.00 0.00 0.00 3.13
427 428 7.892778 TGAAAGGTTTTTAGTGGTTTGTTTC 57.107 32.000 0.00 0.00 0.00 2.78
428 429 8.097662 TGATGAAAGGTTTTTAGTGGTTTGTTT 58.902 29.630 0.00 0.00 0.00 2.83
429 430 7.616313 TGATGAAAGGTTTTTAGTGGTTTGTT 58.384 30.769 0.00 0.00 0.00 2.83
430 431 7.176589 TGATGAAAGGTTTTTAGTGGTTTGT 57.823 32.000 0.00 0.00 0.00 2.83
431 432 8.550376 CATTGATGAAAGGTTTTTAGTGGTTTG 58.450 33.333 0.00 0.00 0.00 2.93
432 433 7.714813 CCATTGATGAAAGGTTTTTAGTGGTTT 59.285 33.333 0.00 0.00 0.00 3.27
433 434 7.070571 TCCATTGATGAAAGGTTTTTAGTGGTT 59.929 33.333 0.00 0.00 0.00 3.67
434 435 6.553100 TCCATTGATGAAAGGTTTTTAGTGGT 59.447 34.615 0.00 0.00 0.00 4.16
435 436 6.868339 GTCCATTGATGAAAGGTTTTTAGTGG 59.132 38.462 0.00 0.00 0.00 4.00
436 437 7.382218 GTGTCCATTGATGAAAGGTTTTTAGTG 59.618 37.037 0.00 0.00 0.00 2.74
437 438 7.287696 AGTGTCCATTGATGAAAGGTTTTTAGT 59.712 33.333 0.00 0.00 0.00 2.24
438 439 7.596248 CAGTGTCCATTGATGAAAGGTTTTTAG 59.404 37.037 0.00 0.00 0.00 1.85
439 440 7.432869 CAGTGTCCATTGATGAAAGGTTTTTA 58.567 34.615 0.00 0.00 0.00 1.52
440 441 6.282930 CAGTGTCCATTGATGAAAGGTTTTT 58.717 36.000 0.00 0.00 0.00 1.94
441 442 5.739935 GCAGTGTCCATTGATGAAAGGTTTT 60.740 40.000 0.00 0.00 0.00 2.43
442 443 4.262164 GCAGTGTCCATTGATGAAAGGTTT 60.262 41.667 0.00 0.00 0.00 3.27
443 444 3.256631 GCAGTGTCCATTGATGAAAGGTT 59.743 43.478 0.00 0.00 0.00 3.50
444 445 2.821969 GCAGTGTCCATTGATGAAAGGT 59.178 45.455 0.00 0.00 0.00 3.50
445 446 2.821378 TGCAGTGTCCATTGATGAAAGG 59.179 45.455 0.00 0.00 0.00 3.11
446 447 4.232221 GTTGCAGTGTCCATTGATGAAAG 58.768 43.478 0.00 0.00 0.00 2.62
447 448 3.635836 TGTTGCAGTGTCCATTGATGAAA 59.364 39.130 0.00 0.00 0.00 2.69
448 449 3.220940 TGTTGCAGTGTCCATTGATGAA 58.779 40.909 0.00 0.00 0.00 2.57
449 450 2.815503 CTGTTGCAGTGTCCATTGATGA 59.184 45.455 0.00 0.00 0.00 2.92
450 451 2.815503 TCTGTTGCAGTGTCCATTGATG 59.184 45.455 0.00 0.00 32.61 3.07
451 452 3.144657 TCTGTTGCAGTGTCCATTGAT 57.855 42.857 0.00 0.00 32.61 2.57
452 453 2.636647 TCTGTTGCAGTGTCCATTGA 57.363 45.000 0.00 0.00 32.61 2.57
453 454 3.366679 GGAATCTGTTGCAGTGTCCATTG 60.367 47.826 12.52 0.00 36.37 2.82
454 455 2.821969 GGAATCTGTTGCAGTGTCCATT 59.178 45.455 12.52 0.14 36.37 3.16
455 456 2.224843 TGGAATCTGTTGCAGTGTCCAT 60.225 45.455 14.70 0.00 39.04 3.41
456 457 1.142667 TGGAATCTGTTGCAGTGTCCA 59.857 47.619 14.70 14.70 40.39 4.02
457 458 1.896220 TGGAATCTGTTGCAGTGTCC 58.104 50.000 11.28 11.28 36.65 4.02
458 459 4.437930 GCTAATGGAATCTGTTGCAGTGTC 60.438 45.833 0.00 0.00 39.12 3.67
459 460 3.441572 GCTAATGGAATCTGTTGCAGTGT 59.558 43.478 0.00 0.00 39.12 3.55
460 461 3.441222 TGCTAATGGAATCTGTTGCAGTG 59.559 43.478 0.00 0.00 39.12 3.66
461 462 3.689347 TGCTAATGGAATCTGTTGCAGT 58.311 40.909 0.00 0.00 39.12 4.40
462 463 4.288670 CTGCTAATGGAATCTGTTGCAG 57.711 45.455 0.00 0.00 39.12 4.41
463 464 3.689347 ACTGCTAATGGAATCTGTTGCA 58.311 40.909 0.00 0.00 40.09 4.08
464 465 3.944015 AGACTGCTAATGGAATCTGTTGC 59.056 43.478 0.00 0.00 0.00 4.17
465 466 6.072286 ACAAAGACTGCTAATGGAATCTGTTG 60.072 38.462 0.00 0.00 0.00 3.33
466 467 6.006449 ACAAAGACTGCTAATGGAATCTGTT 58.994 36.000 0.00 0.00 0.00 3.16
467 468 5.564550 ACAAAGACTGCTAATGGAATCTGT 58.435 37.500 0.00 0.00 0.00 3.41
468 469 5.065731 GGACAAAGACTGCTAATGGAATCTG 59.934 44.000 0.00 0.00 0.00 2.90
469 470 5.189180 GGACAAAGACTGCTAATGGAATCT 58.811 41.667 0.00 0.00 0.00 2.40
470 471 4.943705 TGGACAAAGACTGCTAATGGAATC 59.056 41.667 0.00 0.00 0.00 2.52
471 472 4.922206 TGGACAAAGACTGCTAATGGAAT 58.078 39.130 0.00 0.00 0.00 3.01
472 473 4.365514 TGGACAAAGACTGCTAATGGAA 57.634 40.909 0.00 0.00 0.00 3.53
473 474 4.574674 ATGGACAAAGACTGCTAATGGA 57.425 40.909 0.00 0.00 0.00 3.41
474 475 4.701651 TGAATGGACAAAGACTGCTAATGG 59.298 41.667 0.00 0.00 0.00 3.16
475 476 5.885230 TGAATGGACAAAGACTGCTAATG 57.115 39.130 0.00 0.00 0.00 1.90
476 477 6.660521 TGAATGAATGGACAAAGACTGCTAAT 59.339 34.615 0.00 0.00 0.00 1.73
477 478 6.003326 TGAATGAATGGACAAAGACTGCTAA 58.997 36.000 0.00 0.00 0.00 3.09
478 479 5.559770 TGAATGAATGGACAAAGACTGCTA 58.440 37.500 0.00 0.00 0.00 3.49
479 480 4.401022 TGAATGAATGGACAAAGACTGCT 58.599 39.130 0.00 0.00 0.00 4.24
480 481 4.771590 TGAATGAATGGACAAAGACTGC 57.228 40.909 0.00 0.00 0.00 4.40
481 482 6.404403 CCAGATGAATGAATGGACAAAGACTG 60.404 42.308 0.00 0.00 34.60 3.51
482 483 5.651139 CCAGATGAATGAATGGACAAAGACT 59.349 40.000 0.00 0.00 34.60 3.24
483 484 5.416952 ACCAGATGAATGAATGGACAAAGAC 59.583 40.000 0.00 0.00 36.62 3.01
484 485 5.573219 ACCAGATGAATGAATGGACAAAGA 58.427 37.500 0.00 0.00 36.62 2.52
485 486 5.909621 ACCAGATGAATGAATGGACAAAG 57.090 39.130 0.00 0.00 36.62 2.77
486 487 6.484288 ACTACCAGATGAATGAATGGACAAA 58.516 36.000 0.00 0.00 36.62 2.83
487 488 6.065976 ACTACCAGATGAATGAATGGACAA 57.934 37.500 0.00 0.00 36.62 3.18
488 489 5.426509 AGACTACCAGATGAATGAATGGACA 59.573 40.000 0.00 0.00 36.62 4.02
489 490 5.923204 AGACTACCAGATGAATGAATGGAC 58.077 41.667 0.00 0.00 36.62 4.02
490 491 6.566079 AAGACTACCAGATGAATGAATGGA 57.434 37.500 0.00 0.00 36.62 3.41
491 492 6.039047 CCAAAGACTACCAGATGAATGAATGG 59.961 42.308 0.00 0.00 38.83 3.16
492 493 6.039047 CCCAAAGACTACCAGATGAATGAATG 59.961 42.308 0.00 0.00 0.00 2.67
493 494 6.125029 CCCAAAGACTACCAGATGAATGAAT 58.875 40.000 0.00 0.00 0.00 2.57
494 495 5.500234 CCCAAAGACTACCAGATGAATGAA 58.500 41.667 0.00 0.00 0.00 2.57
495 496 4.626287 GCCCAAAGACTACCAGATGAATGA 60.626 45.833 0.00 0.00 0.00 2.57
496 497 3.629398 GCCCAAAGACTACCAGATGAATG 59.371 47.826 0.00 0.00 0.00 2.67
497 498 3.525199 AGCCCAAAGACTACCAGATGAAT 59.475 43.478 0.00 0.00 0.00 2.57
498 499 2.912956 AGCCCAAAGACTACCAGATGAA 59.087 45.455 0.00 0.00 0.00 2.57
499 500 2.501723 GAGCCCAAAGACTACCAGATGA 59.498 50.000 0.00 0.00 0.00 2.92
500 501 2.420687 GGAGCCCAAAGACTACCAGATG 60.421 54.545 0.00 0.00 0.00 2.90
501 502 1.840635 GGAGCCCAAAGACTACCAGAT 59.159 52.381 0.00 0.00 0.00 2.90
502 503 1.276622 GGAGCCCAAAGACTACCAGA 58.723 55.000 0.00 0.00 0.00 3.86
503 504 0.984230 TGGAGCCCAAAGACTACCAG 59.016 55.000 0.00 0.00 0.00 4.00
504 505 1.440618 TTGGAGCCCAAAGACTACCA 58.559 50.000 4.37 0.00 40.92 3.25
505 506 2.579410 TTTGGAGCCCAAAGACTACC 57.421 50.000 13.46 0.00 46.92 3.18
513 514 1.341482 TGTCTTGTGTTTGGAGCCCAA 60.341 47.619 2.84 2.84 42.29 4.12
514 515 0.257328 TGTCTTGTGTTTGGAGCCCA 59.743 50.000 0.00 0.00 0.00 5.36
515 516 1.067060 GTTGTCTTGTGTTTGGAGCCC 59.933 52.381 0.00 0.00 0.00 5.19
516 517 1.067060 GGTTGTCTTGTGTTTGGAGCC 59.933 52.381 0.00 0.00 0.00 4.70
517 518 1.748493 TGGTTGTCTTGTGTTTGGAGC 59.252 47.619 0.00 0.00 0.00 4.70
518 519 3.192422 TGTTGGTTGTCTTGTGTTTGGAG 59.808 43.478 0.00 0.00 0.00 3.86
519 520 3.157881 TGTTGGTTGTCTTGTGTTTGGA 58.842 40.909 0.00 0.00 0.00 3.53
520 521 3.584406 TGTTGGTTGTCTTGTGTTTGG 57.416 42.857 0.00 0.00 0.00 3.28
521 522 7.769272 AATTATGTTGGTTGTCTTGTGTTTG 57.231 32.000 0.00 0.00 0.00 2.93
563 564 8.670135 CGTGGGTACTGAAATAAATCATGTTAA 58.330 33.333 0.00 0.00 0.00 2.01
564 565 8.041919 TCGTGGGTACTGAAATAAATCATGTTA 58.958 33.333 0.00 0.00 0.00 2.41
565 566 6.882140 TCGTGGGTACTGAAATAAATCATGTT 59.118 34.615 0.00 0.00 0.00 2.71
566 567 6.315393 GTCGTGGGTACTGAAATAAATCATGT 59.685 38.462 0.00 0.00 0.00 3.21
567 568 6.238374 GGTCGTGGGTACTGAAATAAATCATG 60.238 42.308 0.00 0.00 0.00 3.07
568 569 5.820947 GGTCGTGGGTACTGAAATAAATCAT 59.179 40.000 0.00 0.00 0.00 2.45
569 570 5.180271 GGTCGTGGGTACTGAAATAAATCA 58.820 41.667 0.00 0.00 0.00 2.57
570 571 4.573607 GGGTCGTGGGTACTGAAATAAATC 59.426 45.833 0.00 0.00 0.00 2.17
571 572 4.019141 TGGGTCGTGGGTACTGAAATAAAT 60.019 41.667 0.00 0.00 0.00 1.40
572 573 3.327172 TGGGTCGTGGGTACTGAAATAAA 59.673 43.478 0.00 0.00 0.00 1.40
573 574 2.905085 TGGGTCGTGGGTACTGAAATAA 59.095 45.455 0.00 0.00 0.00 1.40
574 575 2.538222 TGGGTCGTGGGTACTGAAATA 58.462 47.619 0.00 0.00 0.00 1.40
575 576 1.354101 TGGGTCGTGGGTACTGAAAT 58.646 50.000 0.00 0.00 0.00 2.17
576 577 1.129917 TTGGGTCGTGGGTACTGAAA 58.870 50.000 0.00 0.00 0.00 2.69
577 578 1.129917 TTTGGGTCGTGGGTACTGAA 58.870 50.000 0.00 0.00 0.00 3.02
578 579 0.393820 GTTTGGGTCGTGGGTACTGA 59.606 55.000 0.00 0.00 0.00 3.41
579 580 0.947180 CGTTTGGGTCGTGGGTACTG 60.947 60.000 0.00 0.00 0.00 2.74
580 581 1.368579 CGTTTGGGTCGTGGGTACT 59.631 57.895 0.00 0.00 0.00 2.73
581 582 2.319841 GCGTTTGGGTCGTGGGTAC 61.320 63.158 0.00 0.00 0.00 3.34
582 583 2.030862 GCGTTTGGGTCGTGGGTA 59.969 61.111 0.00 0.00 0.00 3.69
583 584 4.941309 GGCGTTTGGGTCGTGGGT 62.941 66.667 0.00 0.00 0.00 4.51
585 586 4.973055 TCGGCGTTTGGGTCGTGG 62.973 66.667 6.85 0.00 36.22 4.94
586 587 3.411351 CTCGGCGTTTGGGTCGTG 61.411 66.667 6.85 0.00 36.22 4.35
587 588 2.939261 ATCTCGGCGTTTGGGTCGT 61.939 57.895 6.85 0.00 36.22 4.34
588 589 2.125673 ATCTCGGCGTTTGGGTCG 60.126 61.111 6.85 0.00 36.10 4.79
589 590 0.672401 TTCATCTCGGCGTTTGGGTC 60.672 55.000 6.85 0.00 0.00 4.46
590 591 0.953960 GTTCATCTCGGCGTTTGGGT 60.954 55.000 6.85 0.00 0.00 4.51
591 592 0.953471 TGTTCATCTCGGCGTTTGGG 60.953 55.000 6.85 0.00 0.00 4.12
592 593 0.165944 GTGTTCATCTCGGCGTTTGG 59.834 55.000 6.85 0.00 0.00 3.28
593 594 0.865111 TGTGTTCATCTCGGCGTTTG 59.135 50.000 6.85 3.39 0.00 2.93
594 595 1.464608 CATGTGTTCATCTCGGCGTTT 59.535 47.619 6.85 0.00 31.15 3.60
595 596 1.078709 CATGTGTTCATCTCGGCGTT 58.921 50.000 6.85 0.00 31.15 4.84
596 597 1.361668 GCATGTGTTCATCTCGGCGT 61.362 55.000 6.85 0.00 31.15 5.68
597 598 1.349627 GCATGTGTTCATCTCGGCG 59.650 57.895 0.00 0.00 31.15 6.46
598 599 1.019673 ATGCATGTGTTCATCTCGGC 58.980 50.000 0.00 0.00 31.15 5.54
599 600 2.219445 CGTATGCATGTGTTCATCTCGG 59.781 50.000 10.16 0.00 31.15 4.63
600 601 2.347939 GCGTATGCATGTGTTCATCTCG 60.348 50.000 10.16 0.37 42.15 4.04
601 602 3.244670 GCGTATGCATGTGTTCATCTC 57.755 47.619 10.16 0.00 42.15 2.75
614 615 2.962253 GTCCGAGGCTGCGTATGC 60.962 66.667 0.00 0.00 43.20 3.14
615 616 2.655364 CGTCCGAGGCTGCGTATG 60.655 66.667 0.00 0.00 0.00 2.39
616 617 2.827190 TCGTCCGAGGCTGCGTAT 60.827 61.111 0.00 0.00 0.00 3.06
617 618 3.807538 GTCGTCCGAGGCTGCGTA 61.808 66.667 0.00 0.00 0.00 4.42
620 621 3.575351 AACTGTCGTCCGAGGCTGC 62.575 63.158 0.00 0.00 0.00 5.25
621 622 0.600255 AAAACTGTCGTCCGAGGCTG 60.600 55.000 0.00 0.00 0.00 4.85
622 623 0.106149 AAAAACTGTCGTCCGAGGCT 59.894 50.000 0.00 0.00 0.00 4.58
623 624 1.787012 TAAAAACTGTCGTCCGAGGC 58.213 50.000 0.00 0.00 0.00 4.70
624 625 3.581755 TCATAAAAACTGTCGTCCGAGG 58.418 45.455 0.00 0.00 0.00 4.63
625 626 4.091509 CCTTCATAAAAACTGTCGTCCGAG 59.908 45.833 0.00 0.00 0.00 4.63
626 627 3.991773 CCTTCATAAAAACTGTCGTCCGA 59.008 43.478 0.00 0.00 0.00 4.55
627 628 3.424433 GCCTTCATAAAAACTGTCGTCCG 60.424 47.826 0.00 0.00 0.00 4.79
628 629 3.751698 AGCCTTCATAAAAACTGTCGTCC 59.248 43.478 0.00 0.00 0.00 4.79
629 630 4.378459 CCAGCCTTCATAAAAACTGTCGTC 60.378 45.833 0.00 0.00 0.00 4.20
659 660 1.423584 TTCTTGCTCCTCACAGTGGA 58.576 50.000 0.00 0.00 0.00 4.02
664 665 0.473755 TGCCTTTCTTGCTCCTCACA 59.526 50.000 0.00 0.00 0.00 3.58
775 776 0.981956 GCGTTTTGCCGTGCTATTTC 59.018 50.000 0.00 0.00 37.76 2.17
811 812 0.753111 GTGGCATCAGGGGTGGATTC 60.753 60.000 0.00 0.00 0.00 2.52
824 825 5.250200 TCCGTTTTGAAGTTATAGTGGCAT 58.750 37.500 0.00 0.00 0.00 4.40
1086 1087 4.084066 TCCTGACAAAAATCACAATCGACG 60.084 41.667 0.00 0.00 0.00 5.12
1207 1208 2.260844 TTTTCAGCAGGGTGAGTGAG 57.739 50.000 1.16 0.00 0.00 3.51
1208 1209 2.507484 CATTTTCAGCAGGGTGAGTGA 58.493 47.619 1.16 0.00 0.00 3.41
1209 1210 1.542915 CCATTTTCAGCAGGGTGAGTG 59.457 52.381 1.16 3.25 0.00 3.51
1210 1211 1.425066 TCCATTTTCAGCAGGGTGAGT 59.575 47.619 1.16 0.00 0.00 3.41
1233 1234 3.096092 CCAAGGTTAAGCTATGGGCAAA 58.904 45.455 19.66 0.00 44.79 3.68
2040 2041 3.636764 ACTTTGTTTTCGATTTCTGGCCT 59.363 39.130 3.32 0.00 0.00 5.19
2063 2064 1.474077 GGGCATTCCTTGTTGCTGTAG 59.526 52.381 0.00 0.00 38.88 2.74
2065 2066 0.178953 AGGGCATTCCTTGTTGCTGT 60.179 50.000 0.00 0.00 45.47 4.40
2066 2067 0.245539 CAGGGCATTCCTTGTTGCTG 59.754 55.000 0.00 0.00 45.47 4.41
2079 2080 1.375396 CGGTTGTCGATTCAGGGCA 60.375 57.895 0.00 0.00 42.43 5.36
2399 2400 1.544691 GTAGACAGCGAAACAGGAGGA 59.455 52.381 0.00 0.00 0.00 3.71
2803 2805 3.865446 TGTGACAGAATCATAGTGCTGG 58.135 45.455 0.00 0.00 40.28 4.85
2903 2905 8.501580 GTCATAACATCCATATTCAGTGTGATG 58.498 37.037 0.00 0.00 34.41 3.07
3140 3163 2.603560 CAGAGATTAACGGGCGAACTTC 59.396 50.000 0.00 0.00 0.00 3.01
3150 3173 5.551760 AATTGAAGTGGCAGAGATTAACG 57.448 39.130 0.00 0.00 0.00 3.18
3204 3228 2.846193 TCTGGGTTCACCTTTTCTTCG 58.154 47.619 0.00 0.00 41.11 3.79
3314 3338 8.171840 GCAAGCTTACTACAGAATTTCTTACTG 58.828 37.037 0.00 0.00 37.62 2.74
3315 3339 7.878127 TGCAAGCTTACTACAGAATTTCTTACT 59.122 33.333 0.00 0.00 0.00 2.24
3316 3340 8.029642 TGCAAGCTTACTACAGAATTTCTTAC 57.970 34.615 0.00 0.00 0.00 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.