Multiple sequence alignment - TraesCS3D01G060200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G060200 chr3D 100.000 2823 0 0 1 2823 26261086 26263908 0.000000e+00 5214
1 TraesCS3D01G060200 chr3D 84.927 1234 72 44 223 1381 26211149 26209955 0.000000e+00 1144
2 TraesCS3D01G060200 chr3D 94.545 495 25 1 2331 2823 113570491 113569997 0.000000e+00 763
3 TraesCS3D01G060200 chr3A 85.580 1172 72 39 223 1327 36191930 36190789 0.000000e+00 1138
4 TraesCS3D01G060200 chr3A 86.996 769 39 28 1 738 36229150 36228412 0.000000e+00 809
5 TraesCS3D01G060200 chr3A 88.475 564 64 1 1455 2017 60001492 60002055 0.000000e+00 680
6 TraesCS3D01G060200 chr3A 87.986 566 62 6 1455 2017 704027721 704027159 0.000000e+00 664
7 TraesCS3D01G060200 chr3A 82.232 439 39 13 946 1381 36228228 36227826 2.690000e-90 342
8 TraesCS3D01G060200 chr3A 82.320 181 18 8 726 903 36228395 36228226 8.150000e-31 145
9 TraesCS3D01G060200 chr3B 90.630 683 51 8 669 1347 43735720 43735047 0.000000e+00 894
10 TraesCS3D01G060200 chr3B 91.364 440 14 11 1 429 43736540 43736114 5.240000e-162 580
11 TraesCS3D01G060200 chr5D 95.335 493 22 1 2332 2823 481579431 481578939 0.000000e+00 782
12 TraesCS3D01G060200 chr5D 88.441 571 60 6 1455 2021 543585315 543584747 0.000000e+00 684
13 TraesCS3D01G060200 chr1D 95.335 493 21 2 2332 2823 493372971 493373462 0.000000e+00 782
14 TraesCS3D01G060200 chr1D 94.929 493 24 1 2332 2823 441266224 441265732 0.000000e+00 771
15 TraesCS3D01G060200 chr1D 89.539 564 58 1 1455 2017 98735596 98735033 0.000000e+00 713
16 TraesCS3D01G060200 chr4D 94.303 509 26 3 2316 2823 370452344 370451838 0.000000e+00 776
17 TraesCS3D01G060200 chr4D 94.726 493 25 1 2331 2822 447891179 447890687 0.000000e+00 765
18 TraesCS3D01G060200 chr7D 94.737 494 26 0 2330 2823 365276779 365276286 0.000000e+00 769
19 TraesCS3D01G060200 chr7D 94.343 495 27 1 2330 2823 547495194 547495688 0.000000e+00 758
20 TraesCS3D01G060200 chr6D 94.715 492 26 0 2332 2823 377226802 377227293 0.000000e+00 765
21 TraesCS3D01G060200 chr6D 89.362 564 59 1 1455 2017 130792878 130792315 0.000000e+00 708
22 TraesCS3D01G060200 chr2A 88.988 563 57 5 1458 2017 23881767 23881207 0.000000e+00 691
23 TraesCS3D01G060200 chr2A 88.732 568 61 3 1455 2020 608413992 608413426 0.000000e+00 691
24 TraesCS3D01G060200 chr5A 88.496 565 62 3 1455 2017 150012436 150011873 0.000000e+00 680
25 TraesCS3D01G060200 chr6A 87.965 565 65 3 1455 2017 2367241 2366678 0.000000e+00 664


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G060200 chr3D 26261086 26263908 2822 False 5214 5214 100.000000 1 2823 1 chr3D.!!$F1 2822
1 TraesCS3D01G060200 chr3D 26209955 26211149 1194 True 1144 1144 84.927000 223 1381 1 chr3D.!!$R1 1158
2 TraesCS3D01G060200 chr3A 36190789 36191930 1141 True 1138 1138 85.580000 223 1327 1 chr3A.!!$R1 1104
3 TraesCS3D01G060200 chr3A 60001492 60002055 563 False 680 680 88.475000 1455 2017 1 chr3A.!!$F1 562
4 TraesCS3D01G060200 chr3A 704027159 704027721 562 True 664 664 87.986000 1455 2017 1 chr3A.!!$R2 562
5 TraesCS3D01G060200 chr3A 36227826 36229150 1324 True 432 809 83.849333 1 1381 3 chr3A.!!$R3 1380
6 TraesCS3D01G060200 chr3B 43735047 43736540 1493 True 737 894 90.997000 1 1347 2 chr3B.!!$R1 1346
7 TraesCS3D01G060200 chr5D 543584747 543585315 568 True 684 684 88.441000 1455 2021 1 chr5D.!!$R2 566
8 TraesCS3D01G060200 chr1D 98735033 98735596 563 True 713 713 89.539000 1455 2017 1 chr1D.!!$R1 562
9 TraesCS3D01G060200 chr4D 370451838 370452344 506 True 776 776 94.303000 2316 2823 1 chr4D.!!$R1 507
10 TraesCS3D01G060200 chr6D 130792315 130792878 563 True 708 708 89.362000 1455 2017 1 chr6D.!!$R1 562
11 TraesCS3D01G060200 chr2A 23881207 23881767 560 True 691 691 88.988000 1458 2017 1 chr2A.!!$R1 559
12 TraesCS3D01G060200 chr2A 608413426 608413992 566 True 691 691 88.732000 1455 2020 1 chr2A.!!$R2 565
13 TraesCS3D01G060200 chr5A 150011873 150012436 563 True 680 680 88.496000 1455 2017 1 chr5A.!!$R1 562
14 TraesCS3D01G060200 chr6A 2366678 2367241 563 True 664 664 87.965000 1455 2017 1 chr6A.!!$R1 562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
177 181 0.249447 CTGTGTCACACGAAGAGCCA 60.249 55.0 2.82 0.0 37.14 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1838 2110 0.036199 CCGAAACCCGACAATACCCA 60.036 55.0 0.0 0.0 41.76 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 4.830046 TCCACCTCAGCTCATAGTATCTTC 59.170 45.833 0.00 0.00 0.00 2.87
118 122 4.677832 CCACACCGTTTTTGTAAGCAATAC 59.322 41.667 0.00 0.00 34.18 1.89
120 124 4.581409 ACACCGTTTTTGTAAGCAATACCT 59.419 37.500 0.00 0.00 34.18 3.08
121 125 5.068067 ACACCGTTTTTGTAAGCAATACCTT 59.932 36.000 0.00 0.00 34.18 3.50
122 126 5.401079 CACCGTTTTTGTAAGCAATACCTTG 59.599 40.000 0.00 0.00 34.18 3.61
123 127 5.068067 ACCGTTTTTGTAAGCAATACCTTGT 59.932 36.000 0.00 0.00 34.69 3.16
124 128 5.627780 CCGTTTTTGTAAGCAATACCTTGTC 59.372 40.000 0.00 0.00 34.69 3.18
125 129 5.627780 CGTTTTTGTAAGCAATACCTTGTCC 59.372 40.000 0.00 0.00 34.69 4.02
126 130 6.514376 CGTTTTTGTAAGCAATACCTTGTCCT 60.514 38.462 0.00 0.00 34.69 3.85
127 131 5.957842 TTTGTAAGCAATACCTTGTCCTG 57.042 39.130 0.00 0.00 34.69 3.86
128 132 3.343617 TGTAAGCAATACCTTGTCCTGC 58.656 45.455 0.00 0.00 34.69 4.85
129 133 2.887151 AAGCAATACCTTGTCCTGCT 57.113 45.000 0.00 0.00 45.00 4.24
130 134 2.887151 AGCAATACCTTGTCCTGCTT 57.113 45.000 0.00 0.00 40.36 3.91
139 143 0.912487 TTGTCCTGCTTATCCCCCGT 60.912 55.000 0.00 0.00 0.00 5.28
145 149 1.067582 GCTTATCCCCCGTCGACTG 59.932 63.158 14.70 7.04 0.00 3.51
175 179 1.523095 GAACTGTGTCACACGAAGAGC 59.477 52.381 2.82 0.00 37.14 4.09
176 180 0.249489 ACTGTGTCACACGAAGAGCC 60.249 55.000 2.82 0.00 37.14 4.70
177 181 0.249447 CTGTGTCACACGAAGAGCCA 60.249 55.000 2.82 0.00 37.14 4.75
178 182 0.249447 TGTGTCACACGAAGAGCCAG 60.249 55.000 2.82 0.00 37.14 4.85
179 183 1.300931 TGTCACACGAAGAGCCAGC 60.301 57.895 0.00 0.00 0.00 4.85
220 225 4.802918 GCTTGTGTAGAGAGGCTTTACCAA 60.803 45.833 0.00 0.00 43.14 3.67
523 688 7.970061 TCTTTGCAATGATAGTTTAAGTGATGC 59.030 33.333 10.76 0.00 0.00 3.91
540 705 5.360999 AGTGATGCCCTAATTTTAAGCTTCC 59.639 40.000 0.00 0.00 0.00 3.46
559 724 1.068741 CCCTAACGACAGTGGATAGGC 59.931 57.143 12.06 0.00 33.33 3.93
667 868 5.705441 TGTTCTTTGTATTGGTCATGAGGTC 59.295 40.000 0.00 0.00 0.00 3.85
687 888 7.013274 TGAGGTCCTTTATTTGTTCTTGTGAAG 59.987 37.037 0.00 0.00 32.15 3.02
776 1010 2.908940 CATCATCTTGCCGGCCCC 60.909 66.667 26.77 0.00 0.00 5.80
920 1158 7.704472 CACTAACCTTGATTAGCTAAGACTCAG 59.296 40.741 12.54 8.59 35.86 3.35
957 1203 8.668510 ACACATATCTCTGCCTGTTTATAAAG 57.331 34.615 0.00 0.00 0.00 1.85
960 1206 3.531538 TCTCTGCCTGTTTATAAAGCCG 58.468 45.455 0.00 0.00 0.00 5.52
1260 1510 1.813092 GCGCTCCTGTGATGGAATGAT 60.813 52.381 0.00 0.00 35.43 2.45
1282 1538 5.667539 TTGGATCATCTTCTCTCGTTTCT 57.332 39.130 0.00 0.00 0.00 2.52
1381 1651 1.496934 GTTTTGTGGTTTGCATCCGG 58.503 50.000 0.00 0.00 0.00 5.14
1382 1652 1.067821 GTTTTGTGGTTTGCATCCGGA 59.932 47.619 6.61 6.61 0.00 5.14
1383 1653 1.626686 TTTGTGGTTTGCATCCGGAT 58.373 45.000 12.38 12.38 0.00 4.18
1384 1654 1.626686 TTGTGGTTTGCATCCGGATT 58.373 45.000 16.19 0.00 0.00 3.01
1385 1655 1.626686 TGTGGTTTGCATCCGGATTT 58.373 45.000 16.19 0.00 0.00 2.17
1386 1656 2.796557 TGTGGTTTGCATCCGGATTTA 58.203 42.857 16.19 3.40 0.00 1.40
1387 1657 2.490115 TGTGGTTTGCATCCGGATTTAC 59.510 45.455 16.19 8.11 0.00 2.01
1388 1658 2.490115 GTGGTTTGCATCCGGATTTACA 59.510 45.455 16.19 10.92 0.00 2.41
1389 1659 2.752354 TGGTTTGCATCCGGATTTACAG 59.248 45.455 16.19 4.01 0.00 2.74
1390 1660 2.752903 GGTTTGCATCCGGATTTACAGT 59.247 45.455 16.19 0.00 0.00 3.55
1391 1661 3.942748 GGTTTGCATCCGGATTTACAGTA 59.057 43.478 16.19 0.00 0.00 2.74
1392 1662 4.201881 GGTTTGCATCCGGATTTACAGTAC 60.202 45.833 16.19 13.89 0.00 2.73
1393 1663 4.481368 TTGCATCCGGATTTACAGTACT 57.519 40.909 16.19 0.00 0.00 2.73
1394 1664 5.601583 TTGCATCCGGATTTACAGTACTA 57.398 39.130 16.19 0.00 0.00 1.82
1395 1665 4.940463 TGCATCCGGATTTACAGTACTAC 58.060 43.478 16.19 0.00 0.00 2.73
1396 1666 4.647853 TGCATCCGGATTTACAGTACTACT 59.352 41.667 16.19 0.00 0.00 2.57
1397 1667 5.829391 TGCATCCGGATTTACAGTACTACTA 59.171 40.000 16.19 0.00 0.00 1.82
1398 1668 6.492429 TGCATCCGGATTTACAGTACTACTAT 59.508 38.462 16.19 0.00 0.00 2.12
1399 1669 7.666804 TGCATCCGGATTTACAGTACTACTATA 59.333 37.037 16.19 0.00 0.00 1.31
1400 1670 8.517878 GCATCCGGATTTACAGTACTACTATAA 58.482 37.037 16.19 0.00 0.00 0.98
1452 1722 9.204337 ACTATAATACTGTACAACACCATACCA 57.796 33.333 0.00 0.00 0.00 3.25
1457 1727 5.815581 ACTGTACAACACCATACCATCATT 58.184 37.500 0.00 0.00 0.00 2.57
1484 1754 3.120199 CGAGAAAATCGCAAACACATCCT 60.120 43.478 0.00 0.00 45.98 3.24
1497 1767 2.787625 ACACATCCTCATCCCCATCAAT 59.212 45.455 0.00 0.00 0.00 2.57
1513 1783 0.039074 CAATGTGCGCGGGGTTAAAA 60.039 50.000 8.83 0.00 0.00 1.52
1623 1893 8.818141 TGAAAGAAGAATAGGAGCATATTACG 57.182 34.615 0.00 0.00 0.00 3.18
1627 1897 5.683876 AGAATAGGAGCATATTACGGCAT 57.316 39.130 0.00 0.00 0.00 4.40
1668 1939 3.809279 CCTCGGTTTAGGTTTACGTGTTT 59.191 43.478 0.00 0.00 31.46 2.83
1676 1947 4.769859 AGGTTTACGTGTTTTGTTGTGT 57.230 36.364 0.00 0.00 0.00 3.72
1692 1963 1.000993 TGTGGGAGAGAGAGGCCTC 59.999 63.158 26.22 26.22 39.72 4.70
1694 1965 0.398381 GTGGGAGAGAGAGGCCTCAT 60.398 60.000 33.90 22.15 41.87 2.90
1716 1987 2.734723 GAGCGACACTGCAGCGAA 60.735 61.111 15.27 0.00 37.31 4.70
1722 1993 3.037833 CACTGCAGCGAACGAGCA 61.038 61.111 15.27 12.30 40.15 4.26
1738 2009 2.525368 GAGCAAGGGGTTGGTTTGTAT 58.475 47.619 0.00 0.00 32.16 2.29
1802 2073 1.260544 GCTTTGGGCCACTTGAATCT 58.739 50.000 5.23 0.00 34.27 2.40
1816 2087 6.351711 CACTTGAATCTAGATGGATTGGTGA 58.648 40.000 5.86 0.00 36.24 4.02
1825 2097 7.345691 TCTAGATGGATTGGTGAATGCTAAAA 58.654 34.615 0.00 0.00 31.38 1.52
1862 2134 0.108963 ATTGTCGGGTTTCGGGTTCA 59.891 50.000 0.00 0.00 39.77 3.18
1867 2139 0.035176 CGGGTTTCGGGTTCAGGTAA 59.965 55.000 0.00 0.00 34.75 2.85
1900 2172 3.057174 GGTTTAAACCCGTGAATCATGCA 60.057 43.478 24.50 0.00 43.43 3.96
1921 2193 6.010850 TGCAGGGTTTTATAATGTAACCACA 58.989 36.000 15.99 9.85 42.44 4.17
2021 2294 2.624838 CCCCATTGCCATCTTGATACAC 59.375 50.000 0.00 0.00 0.00 2.90
2022 2295 2.291465 CCCATTGCCATCTTGATACACG 59.709 50.000 0.00 0.00 0.00 4.49
2023 2296 3.205338 CCATTGCCATCTTGATACACGA 58.795 45.455 0.00 0.00 0.00 4.35
2024 2297 3.002656 CCATTGCCATCTTGATACACGAC 59.997 47.826 0.00 0.00 0.00 4.34
2025 2298 1.921243 TGCCATCTTGATACACGACG 58.079 50.000 0.00 0.00 0.00 5.12
2026 2299 1.203758 TGCCATCTTGATACACGACGT 59.796 47.619 0.00 0.00 0.00 4.34
2027 2300 1.852895 GCCATCTTGATACACGACGTC 59.147 52.381 5.18 5.18 0.00 4.34
2028 2301 2.109463 CCATCTTGATACACGACGTCG 58.891 52.381 34.58 34.58 46.33 5.12
2039 2312 2.354305 GACGTCGTCGCAGGTTGT 60.354 61.111 10.05 0.00 41.18 3.32
2040 2313 2.354305 ACGTCGTCGCAGGTTGTC 60.354 61.111 0.99 0.00 41.18 3.18
2041 2314 3.103911 CGTCGTCGCAGGTTGTCC 61.104 66.667 0.00 0.00 0.00 4.02
2042 2315 2.028484 GTCGTCGCAGGTTGTCCA 59.972 61.111 0.00 0.00 35.89 4.02
2043 2316 1.374252 GTCGTCGCAGGTTGTCCAT 60.374 57.895 0.00 0.00 35.89 3.41
2044 2317 0.949105 GTCGTCGCAGGTTGTCCATT 60.949 55.000 0.00 0.00 35.89 3.16
2045 2318 0.604073 TCGTCGCAGGTTGTCCATTA 59.396 50.000 0.00 0.00 35.89 1.90
2046 2319 1.206132 TCGTCGCAGGTTGTCCATTAT 59.794 47.619 0.00 0.00 35.89 1.28
2047 2320 1.327460 CGTCGCAGGTTGTCCATTATG 59.673 52.381 0.00 0.00 35.89 1.90
2048 2321 1.670811 GTCGCAGGTTGTCCATTATGG 59.329 52.381 4.57 4.57 39.43 2.74
2049 2322 0.381801 CGCAGGTTGTCCATTATGGC 59.618 55.000 6.33 2.62 37.47 4.40
2050 2323 1.767759 GCAGGTTGTCCATTATGGCT 58.232 50.000 6.33 0.00 37.47 4.75
2051 2324 1.406539 GCAGGTTGTCCATTATGGCTG 59.593 52.381 6.33 8.70 37.47 4.85
2052 2325 2.026641 CAGGTTGTCCATTATGGCTGG 58.973 52.381 6.33 0.00 37.47 4.85
2053 2326 0.746659 GGTTGTCCATTATGGCTGGC 59.253 55.000 6.33 0.00 37.47 4.85
2054 2327 1.686115 GGTTGTCCATTATGGCTGGCT 60.686 52.381 6.33 0.00 37.47 4.75
2055 2328 1.678101 GTTGTCCATTATGGCTGGCTC 59.322 52.381 6.33 0.00 37.47 4.70
2056 2329 1.216064 TGTCCATTATGGCTGGCTCT 58.784 50.000 6.33 0.00 37.47 4.09
2057 2330 2.407562 TGTCCATTATGGCTGGCTCTA 58.592 47.619 6.33 0.00 37.47 2.43
2058 2331 2.369860 TGTCCATTATGGCTGGCTCTAG 59.630 50.000 6.33 0.00 37.47 2.43
2059 2332 1.349026 TCCATTATGGCTGGCTCTAGC 59.651 52.381 6.33 0.00 42.94 3.42
2069 2342 3.905249 GCTCTAGCCCGGGTTTTG 58.095 61.111 24.63 12.92 34.31 2.44
2070 2343 1.749258 GCTCTAGCCCGGGTTTTGG 60.749 63.158 24.63 10.53 34.31 3.28
2071 2344 1.683441 CTCTAGCCCGGGTTTTGGT 59.317 57.895 24.63 3.06 0.00 3.67
2072 2345 0.676782 CTCTAGCCCGGGTTTTGGTG 60.677 60.000 24.63 7.52 0.00 4.17
2073 2346 1.677633 CTAGCCCGGGTTTTGGTGG 60.678 63.158 24.63 0.00 0.00 4.61
2074 2347 3.871850 TAGCCCGGGTTTTGGTGGC 62.872 63.158 24.63 3.52 42.48 5.01
2076 2349 3.302344 CCCGGGTTTTGGTGGCAG 61.302 66.667 14.18 0.00 0.00 4.85
2077 2350 3.302344 CCGGGTTTTGGTGGCAGG 61.302 66.667 0.00 0.00 0.00 4.85
2078 2351 2.203422 CGGGTTTTGGTGGCAGGA 60.203 61.111 0.00 0.00 0.00 3.86
2079 2352 1.830408 CGGGTTTTGGTGGCAGGAA 60.830 57.895 0.00 0.00 0.00 3.36
2080 2353 1.805428 CGGGTTTTGGTGGCAGGAAG 61.805 60.000 0.00 0.00 0.00 3.46
2081 2354 0.759060 GGGTTTTGGTGGCAGGAAGT 60.759 55.000 0.00 0.00 0.00 3.01
2082 2355 1.119684 GGTTTTGGTGGCAGGAAGTT 58.880 50.000 0.00 0.00 0.00 2.66
2083 2356 1.202521 GGTTTTGGTGGCAGGAAGTTG 60.203 52.381 0.00 0.00 0.00 3.16
2084 2357 0.463620 TTTTGGTGGCAGGAAGTTGC 59.536 50.000 0.00 0.00 43.34 4.17
2085 2358 1.733402 TTTGGTGGCAGGAAGTTGCG 61.733 55.000 0.00 0.00 45.00 4.85
2086 2359 2.594592 GGTGGCAGGAAGTTGCGT 60.595 61.111 0.00 0.00 45.00 5.24
2087 2360 2.193536 GGTGGCAGGAAGTTGCGTT 61.194 57.895 0.00 0.00 45.00 4.84
2088 2361 1.282875 GTGGCAGGAAGTTGCGTTC 59.717 57.895 0.00 0.00 45.00 3.95
2089 2362 2.250939 TGGCAGGAAGTTGCGTTCG 61.251 57.895 0.00 0.00 45.00 3.95
2090 2363 2.127232 GCAGGAAGTTGCGTTCGC 60.127 61.111 10.34 10.34 33.90 4.70
2091 2364 2.607892 GCAGGAAGTTGCGTTCGCT 61.608 57.895 17.63 0.00 33.90 4.93
2092 2365 1.205064 CAGGAAGTTGCGTTCGCTG 59.795 57.895 17.63 2.75 0.00 5.18
2093 2366 2.127232 GGAAGTTGCGTTCGCTGC 60.127 61.111 17.63 10.31 0.00 5.25
2094 2367 2.497628 GAAGTTGCGTTCGCTGCG 60.498 61.111 17.25 17.25 34.24 5.18
2095 2368 3.911155 GAAGTTGCGTTCGCTGCGG 62.911 63.158 23.03 7.34 34.24 5.69
2107 2380 3.402681 CTGCGGGGAGGTGGTGAT 61.403 66.667 0.00 0.00 0.00 3.06
2108 2381 3.687321 CTGCGGGGAGGTGGTGATG 62.687 68.421 0.00 0.00 0.00 3.07
2110 2383 3.402681 CGGGGAGGTGGTGATGCT 61.403 66.667 0.00 0.00 0.00 3.79
2111 2384 2.273449 GGGGAGGTGGTGATGCTG 59.727 66.667 0.00 0.00 0.00 4.41
2112 2385 2.439156 GGGAGGTGGTGATGCTGC 60.439 66.667 0.00 0.00 0.00 5.25
2113 2386 2.673523 GGAGGTGGTGATGCTGCT 59.326 61.111 0.00 0.00 0.00 4.24
2114 2387 1.001641 GGAGGTGGTGATGCTGCTT 60.002 57.895 0.00 0.00 0.00 3.91
2115 2388 1.028868 GGAGGTGGTGATGCTGCTTC 61.029 60.000 8.46 8.46 0.00 3.86
2116 2389 1.364626 GAGGTGGTGATGCTGCTTCG 61.365 60.000 10.45 0.00 0.00 3.79
2117 2390 1.672356 GGTGGTGATGCTGCTTCGT 60.672 57.895 10.45 0.00 0.00 3.85
2118 2391 1.639298 GGTGGTGATGCTGCTTCGTC 61.639 60.000 10.45 6.54 0.00 4.20
2119 2392 1.375908 TGGTGATGCTGCTTCGTCC 60.376 57.895 16.62 16.62 0.00 4.79
2120 2393 2.109126 GGTGATGCTGCTTCGTCCC 61.109 63.158 10.45 6.91 0.00 4.46
2121 2394 2.125552 TGATGCTGCTTCGTCCCG 60.126 61.111 10.45 0.00 0.00 5.14
2122 2395 2.184322 GATGCTGCTTCGTCCCGA 59.816 61.111 0.00 0.00 0.00 5.14
2123 2396 1.447838 GATGCTGCTTCGTCCCGAA 60.448 57.895 0.00 0.00 43.75 4.30
2144 2417 2.267642 CGGATTTCGCCAGGGACA 59.732 61.111 0.00 0.00 0.00 4.02
2145 2418 1.815421 CGGATTTCGCCAGGGACAG 60.815 63.158 0.00 0.00 0.00 3.51
2146 2419 1.299976 GGATTTCGCCAGGGACAGT 59.700 57.895 0.00 0.00 0.00 3.55
2147 2420 0.744771 GGATTTCGCCAGGGACAGTC 60.745 60.000 0.00 0.00 0.00 3.51
2148 2421 0.036388 GATTTCGCCAGGGACAGTCA 60.036 55.000 2.17 0.00 0.00 3.41
2149 2422 0.620556 ATTTCGCCAGGGACAGTCAT 59.379 50.000 2.17 0.00 0.00 3.06
2150 2423 0.321564 TTTCGCCAGGGACAGTCATG 60.322 55.000 2.17 0.40 0.00 3.07
2151 2424 1.480212 TTCGCCAGGGACAGTCATGT 61.480 55.000 2.17 0.00 44.31 3.21
2158 2431 3.075998 GACAGTCATGTCGCGCTG 58.924 61.111 5.56 4.16 46.01 5.18
2159 2432 3.076296 GACAGTCATGTCGCGCTGC 62.076 63.158 5.56 0.00 46.01 5.25
2160 2433 3.857854 CAGTCATGTCGCGCTGCC 61.858 66.667 5.56 0.00 0.00 4.85
2182 2455 4.373116 CGTCCGGTGGTGAGGGTG 62.373 72.222 0.00 0.00 0.00 4.61
2183 2456 4.699522 GTCCGGTGGTGAGGGTGC 62.700 72.222 0.00 0.00 0.00 5.01
2184 2457 4.954118 TCCGGTGGTGAGGGTGCT 62.954 66.667 0.00 0.00 0.00 4.40
2185 2458 4.394712 CCGGTGGTGAGGGTGCTC 62.395 72.222 0.00 0.00 0.00 4.26
2186 2459 3.625897 CGGTGGTGAGGGTGCTCA 61.626 66.667 0.00 0.00 0.00 4.26
2187 2460 2.348998 GGTGGTGAGGGTGCTCAG 59.651 66.667 0.00 0.00 33.58 3.35
2188 2461 2.217038 GGTGGTGAGGGTGCTCAGA 61.217 63.158 0.00 0.00 33.58 3.27
2189 2462 1.557269 GGTGGTGAGGGTGCTCAGAT 61.557 60.000 0.00 0.00 33.58 2.90
2190 2463 0.392193 GTGGTGAGGGTGCTCAGATG 60.392 60.000 0.00 0.00 33.58 2.90
2191 2464 1.222936 GGTGAGGGTGCTCAGATGG 59.777 63.158 0.00 0.00 33.58 3.51
2192 2465 1.267574 GGTGAGGGTGCTCAGATGGA 61.268 60.000 0.00 0.00 33.58 3.41
2193 2466 0.835941 GTGAGGGTGCTCAGATGGAT 59.164 55.000 0.00 0.00 33.58 3.41
2194 2467 1.126488 TGAGGGTGCTCAGATGGATC 58.874 55.000 0.00 0.00 0.00 3.36
2195 2468 1.343782 TGAGGGTGCTCAGATGGATCT 60.344 52.381 0.00 0.00 37.72 2.75
2210 2483 7.929941 AGATGGATCTGTTCTTTTCTTTACC 57.070 36.000 0.00 0.00 35.42 2.85
2211 2484 7.694093 AGATGGATCTGTTCTTTTCTTTACCT 58.306 34.615 0.00 0.00 35.42 3.08
2212 2485 8.166726 AGATGGATCTGTTCTTTTCTTTACCTT 58.833 33.333 0.00 0.00 35.42 3.50
2213 2486 8.712228 ATGGATCTGTTCTTTTCTTTACCTTT 57.288 30.769 0.00 0.00 0.00 3.11
2214 2487 8.533569 TGGATCTGTTCTTTTCTTTACCTTTT 57.466 30.769 0.00 0.00 0.00 2.27
2215 2488 8.977412 TGGATCTGTTCTTTTCTTTACCTTTTT 58.023 29.630 0.00 0.00 0.00 1.94
2218 2491 9.946165 ATCTGTTCTTTTCTTTACCTTTTTACG 57.054 29.630 0.00 0.00 0.00 3.18
2219 2492 8.400186 TCTGTTCTTTTCTTTACCTTTTTACGG 58.600 33.333 0.00 0.00 0.00 4.02
2220 2493 8.278729 TGTTCTTTTCTTTACCTTTTTACGGA 57.721 30.769 0.00 0.00 0.00 4.69
2221 2494 8.738106 TGTTCTTTTCTTTACCTTTTTACGGAA 58.262 29.630 0.00 0.00 0.00 4.30
2222 2495 9.740239 GTTCTTTTCTTTACCTTTTTACGGAAT 57.260 29.630 0.00 0.00 0.00 3.01
2226 2499 8.785468 TTTCTTTACCTTTTTACGGAATTTCG 57.215 30.769 4.10 4.10 0.00 3.46
2227 2500 7.495135 TCTTTACCTTTTTACGGAATTTCGT 57.505 32.000 17.39 17.39 45.88 3.85
2228 2501 7.929159 TCTTTACCTTTTTACGGAATTTCGTT 58.071 30.769 18.56 0.00 43.59 3.85
2229 2502 9.050601 TCTTTACCTTTTTACGGAATTTCGTTA 57.949 29.630 18.56 5.29 43.59 3.18
2230 2503 9.321590 CTTTACCTTTTTACGGAATTTCGTTAG 57.678 33.333 18.56 9.76 43.59 2.34
2231 2504 8.600449 TTACCTTTTTACGGAATTTCGTTAGA 57.400 30.769 18.56 0.00 43.59 2.10
2232 2505 7.677454 ACCTTTTTACGGAATTTCGTTAGAT 57.323 32.000 18.56 0.00 43.59 1.98
2233 2506 7.524065 ACCTTTTTACGGAATTTCGTTAGATG 58.476 34.615 18.56 5.96 43.59 2.90
2234 2507 6.964934 CCTTTTTACGGAATTTCGTTAGATGG 59.035 38.462 18.56 11.23 43.59 3.51
2235 2508 7.361457 CCTTTTTACGGAATTTCGTTAGATGGT 60.361 37.037 18.56 0.00 43.59 3.55
2236 2509 6.411630 TTTACGGAATTTCGTTAGATGGTG 57.588 37.500 18.56 0.00 43.59 4.17
2237 2510 3.267483 ACGGAATTTCGTTAGATGGTGG 58.733 45.455 5.79 0.00 40.85 4.61
2238 2511 2.612212 CGGAATTTCGTTAGATGGTGGG 59.388 50.000 0.00 0.00 0.00 4.61
2239 2512 2.949644 GGAATTTCGTTAGATGGTGGGG 59.050 50.000 0.00 0.00 0.00 4.96
2240 2513 3.371166 GGAATTTCGTTAGATGGTGGGGA 60.371 47.826 0.00 0.00 0.00 4.81
2241 2514 3.560636 ATTTCGTTAGATGGTGGGGAG 57.439 47.619 0.00 0.00 0.00 4.30
2242 2515 0.539986 TTCGTTAGATGGTGGGGAGC 59.460 55.000 0.00 0.00 0.00 4.70
2243 2516 0.325296 TCGTTAGATGGTGGGGAGCT 60.325 55.000 0.00 0.00 0.00 4.09
2244 2517 0.105039 CGTTAGATGGTGGGGAGCTC 59.895 60.000 4.71 4.71 0.00 4.09
2245 2518 1.501582 GTTAGATGGTGGGGAGCTCT 58.498 55.000 14.64 0.00 0.00 4.09
2246 2519 1.414550 GTTAGATGGTGGGGAGCTCTC 59.585 57.143 14.64 10.01 0.00 3.20
2247 2520 0.468214 TAGATGGTGGGGAGCTCTCG 60.468 60.000 14.64 0.00 0.00 4.04
2248 2521 3.453070 GATGGTGGGGAGCTCTCGC 62.453 68.421 14.64 12.39 41.23 5.03
2250 2523 4.459089 GGTGGGGAGCTCTCGCAC 62.459 72.222 28.52 28.52 43.40 5.34
2251 2524 4.803426 GTGGGGAGCTCTCGCACG 62.803 72.222 25.30 0.00 43.40 5.34
2253 2526 4.070552 GGGGAGCTCTCGCACGTT 62.071 66.667 14.64 0.00 43.40 3.99
2254 2527 2.811317 GGGAGCTCTCGCACGTTG 60.811 66.667 14.64 0.00 41.53 4.10
2255 2528 2.258591 GGAGCTCTCGCACGTTGA 59.741 61.111 14.64 0.00 39.10 3.18
2256 2529 1.372997 GGAGCTCTCGCACGTTGAA 60.373 57.895 14.64 0.00 39.10 2.69
2257 2530 1.618640 GGAGCTCTCGCACGTTGAAC 61.619 60.000 14.64 0.00 39.10 3.18
2258 2531 0.939577 GAGCTCTCGCACGTTGAACA 60.940 55.000 6.43 0.00 39.10 3.18
2259 2532 0.529773 AGCTCTCGCACGTTGAACAA 60.530 50.000 0.00 0.00 39.10 2.83
2260 2533 0.303493 GCTCTCGCACGTTGAACAAA 59.697 50.000 0.00 0.00 35.78 2.83
2261 2534 1.657538 GCTCTCGCACGTTGAACAAAG 60.658 52.381 0.00 0.00 35.78 2.77
2262 2535 1.593006 CTCTCGCACGTTGAACAAAGT 59.407 47.619 0.00 0.80 33.42 2.66
2263 2536 2.004017 TCTCGCACGTTGAACAAAGTT 58.996 42.857 3.67 0.00 30.85 2.66
2264 2537 2.417239 TCTCGCACGTTGAACAAAGTTT 59.583 40.909 3.67 0.00 30.85 2.66
2265 2538 3.617706 TCTCGCACGTTGAACAAAGTTTA 59.382 39.130 3.67 0.00 30.85 2.01
2266 2539 4.271533 TCTCGCACGTTGAACAAAGTTTAT 59.728 37.500 3.67 0.00 30.85 1.40
2267 2540 4.520078 TCGCACGTTGAACAAAGTTTATC 58.480 39.130 3.67 0.00 30.85 1.75
2268 2541 4.271533 TCGCACGTTGAACAAAGTTTATCT 59.728 37.500 3.67 0.00 30.85 1.98
2269 2542 4.967575 CGCACGTTGAACAAAGTTTATCTT 59.032 37.500 3.67 0.00 38.10 2.40
2270 2543 5.113529 CGCACGTTGAACAAAGTTTATCTTC 59.886 40.000 3.67 0.00 35.02 2.87
2271 2544 5.968848 GCACGTTGAACAAAGTTTATCTTCA 59.031 36.000 3.67 0.00 35.02 3.02
2272 2545 6.075572 GCACGTTGAACAAAGTTTATCTTCAC 60.076 38.462 3.67 0.00 35.02 3.18
2273 2546 7.186804 CACGTTGAACAAAGTTTATCTTCACT 58.813 34.615 3.67 0.00 35.02 3.41
2274 2547 7.696453 CACGTTGAACAAAGTTTATCTTCACTT 59.304 33.333 3.67 0.00 35.02 3.16
2275 2548 7.908601 ACGTTGAACAAAGTTTATCTTCACTTC 59.091 33.333 0.00 0.00 35.02 3.01
2276 2549 7.908082 CGTTGAACAAAGTTTATCTTCACTTCA 59.092 33.333 0.00 0.00 35.02 3.02
2277 2550 9.010366 GTTGAACAAAGTTTATCTTCACTTCAC 57.990 33.333 0.00 0.00 35.02 3.18
2278 2551 8.506168 TGAACAAAGTTTATCTTCACTTCACT 57.494 30.769 0.00 0.00 35.02 3.41
2279 2552 9.607988 TGAACAAAGTTTATCTTCACTTCACTA 57.392 29.630 0.00 0.00 35.02 2.74
2280 2553 9.865484 GAACAAAGTTTATCTTCACTTCACTAC 57.135 33.333 0.00 0.00 35.02 2.73
2281 2554 8.379457 ACAAAGTTTATCTTCACTTCACTACC 57.621 34.615 0.00 0.00 35.02 3.18
2282 2555 7.990886 ACAAAGTTTATCTTCACTTCACTACCA 59.009 33.333 0.00 0.00 35.02 3.25
2283 2556 9.003658 CAAAGTTTATCTTCACTTCACTACCAT 57.996 33.333 0.00 0.00 35.02 3.55
2284 2557 9.574516 AAAGTTTATCTTCACTTCACTACCATT 57.425 29.630 0.00 0.00 35.02 3.16
2290 2563 8.918202 ATCTTCACTTCACTACCATTAAACAA 57.082 30.769 0.00 0.00 0.00 2.83
2291 2564 8.918202 TCTTCACTTCACTACCATTAAACAAT 57.082 30.769 0.00 0.00 0.00 2.71
2292 2565 8.999431 TCTTCACTTCACTACCATTAAACAATC 58.001 33.333 0.00 0.00 0.00 2.67
2293 2566 8.684386 TTCACTTCACTACCATTAAACAATCA 57.316 30.769 0.00 0.00 0.00 2.57
2294 2567 8.684386 TCACTTCACTACCATTAAACAATCAA 57.316 30.769 0.00 0.00 0.00 2.57
2295 2568 9.126151 TCACTTCACTACCATTAAACAATCAAA 57.874 29.630 0.00 0.00 0.00 2.69
2296 2569 9.180678 CACTTCACTACCATTAAACAATCAAAC 57.819 33.333 0.00 0.00 0.00 2.93
2297 2570 8.908903 ACTTCACTACCATTAAACAATCAAACA 58.091 29.630 0.00 0.00 0.00 2.83
2298 2571 9.180678 CTTCACTACCATTAAACAATCAAACAC 57.819 33.333 0.00 0.00 0.00 3.32
2299 2572 7.356540 TCACTACCATTAAACAATCAAACACG 58.643 34.615 0.00 0.00 0.00 4.49
2300 2573 7.226918 TCACTACCATTAAACAATCAAACACGA 59.773 33.333 0.00 0.00 0.00 4.35
2301 2574 7.858382 CACTACCATTAAACAATCAAACACGAA 59.142 33.333 0.00 0.00 0.00 3.85
2302 2575 7.858879 ACTACCATTAAACAATCAAACACGAAC 59.141 33.333 0.00 0.00 0.00 3.95
2303 2576 6.801575 ACCATTAAACAATCAAACACGAACT 58.198 32.000 0.00 0.00 0.00 3.01
2304 2577 7.262048 ACCATTAAACAATCAAACACGAACTT 58.738 30.769 0.00 0.00 0.00 2.66
2305 2578 7.762159 ACCATTAAACAATCAAACACGAACTTT 59.238 29.630 0.00 0.00 0.00 2.66
2306 2579 8.265998 CCATTAAACAATCAAACACGAACTTTC 58.734 33.333 0.00 0.00 0.00 2.62
2307 2580 9.019764 CATTAAACAATCAAACACGAACTTTCT 57.980 29.630 0.00 0.00 0.00 2.52
2308 2581 8.973835 TTAAACAATCAAACACGAACTTTCTT 57.026 26.923 0.00 0.00 0.00 2.52
2310 2583 8.614994 AAACAATCAAACACGAACTTTCTTAG 57.385 30.769 0.00 0.00 0.00 2.18
2311 2584 6.725246 ACAATCAAACACGAACTTTCTTAGG 58.275 36.000 0.00 0.00 0.00 2.69
2312 2585 5.941948 ATCAAACACGAACTTTCTTAGGG 57.058 39.130 0.00 0.00 0.00 3.53
2313 2586 5.026038 TCAAACACGAACTTTCTTAGGGA 57.974 39.130 0.00 0.00 0.00 4.20
2314 2587 4.812626 TCAAACACGAACTTTCTTAGGGAC 59.187 41.667 0.00 0.00 0.00 4.46
2315 2588 4.411256 AACACGAACTTTCTTAGGGACA 57.589 40.909 0.00 0.00 0.00 4.02
2316 2589 3.725490 ACACGAACTTTCTTAGGGACAC 58.275 45.455 0.00 0.00 0.00 3.67
2317 2590 3.064931 CACGAACTTTCTTAGGGACACC 58.935 50.000 0.00 0.00 0.00 4.16
2318 2591 2.701951 ACGAACTTTCTTAGGGACACCA 59.298 45.455 0.00 0.00 40.13 4.17
2319 2592 3.064931 CGAACTTTCTTAGGGACACCAC 58.935 50.000 0.00 0.00 40.13 4.16
2320 2593 3.493699 CGAACTTTCTTAGGGACACCACA 60.494 47.826 0.00 0.00 40.13 4.17
2321 2594 3.487120 ACTTTCTTAGGGACACCACAC 57.513 47.619 0.00 0.00 40.13 3.82
2322 2595 2.775384 ACTTTCTTAGGGACACCACACA 59.225 45.455 0.00 0.00 40.13 3.72
2323 2596 3.201266 ACTTTCTTAGGGACACCACACAA 59.799 43.478 0.00 0.00 40.13 3.33
2324 2597 4.141251 ACTTTCTTAGGGACACCACACAAT 60.141 41.667 0.00 0.00 40.13 2.71
2325 2598 4.447138 TTCTTAGGGACACCACACAATT 57.553 40.909 0.00 0.00 40.13 2.32
2326 2599 5.570205 TTCTTAGGGACACCACACAATTA 57.430 39.130 0.00 0.00 40.13 1.40
2327 2600 5.160607 TCTTAGGGACACCACACAATTAG 57.839 43.478 0.00 0.00 40.13 1.73
2328 2601 4.595781 TCTTAGGGACACCACACAATTAGT 59.404 41.667 0.00 0.00 40.13 2.24
2329 2602 3.418684 AGGGACACCACACAATTAGTC 57.581 47.619 0.00 0.00 40.13 2.59
2372 2645 3.148026 TGTTGATGCAATATTGTGCCG 57.852 42.857 16.61 0.00 44.26 5.69
2373 2646 2.751806 TGTTGATGCAATATTGTGCCGA 59.248 40.909 16.61 3.69 44.26 5.54
2378 2651 4.578105 TGATGCAATATTGTGCCGATACAA 59.422 37.500 16.61 6.85 44.26 2.41
2381 2654 4.637977 TGCAATATTGTGCCGATACAAGAA 59.362 37.500 16.61 2.70 43.14 2.52
2408 2681 1.261938 TAAGAGCCAAGCCGCACCTA 61.262 55.000 0.00 0.00 0.00 3.08
2410 2683 1.452108 GAGCCAAGCCGCACCTAAT 60.452 57.895 0.00 0.00 0.00 1.73
2439 2712 5.829924 CCCTATTACAAACCGAGTAGGAGTA 59.170 44.000 0.00 0.00 45.00 2.59
2487 2760 4.308458 CCCCCGCAGTGTCAACGA 62.308 66.667 0.00 0.00 0.00 3.85
2665 2938 1.089481 ATATGCTTGGTGCGACGGTG 61.089 55.000 0.00 0.00 46.63 4.94
2672 2945 1.885850 GGTGCGACGGTGTTGAACT 60.886 57.895 0.00 0.00 0.00 3.01
2679 2952 1.804748 GACGGTGTTGAACTGGATTCC 59.195 52.381 0.00 0.00 39.74 3.01
2681 2954 1.545841 GGTGTTGAACTGGATTCCCC 58.454 55.000 0.00 0.00 36.36 4.81
2693 2966 1.269621 GGATTCCCCGACATGTAGACG 60.270 57.143 7.62 2.89 35.18 4.18
2740 3013 4.551702 TTGTAGCTTGCTCAATAGGACA 57.448 40.909 0.00 0.00 0.00 4.02
2749 3022 2.938756 GCTCAATAGGACAGTGCAGCTT 60.939 50.000 0.00 0.00 0.00 3.74
2781 3054 0.238817 GCGCAACCAAACCGTATCAA 59.761 50.000 0.30 0.00 0.00 2.57
2799 3072 1.518056 AACAACCGCATGAGCCACAG 61.518 55.000 0.00 0.00 37.52 3.66
2800 3073 1.968017 CAACCGCATGAGCCACAGT 60.968 57.895 0.00 0.00 37.52 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 96 1.331138 CTTACAAAAACGGTGTGGCGA 59.669 47.619 0.00 0.00 0.00 5.54
118 122 0.183731 GGGGGATAAGCAGGACAAGG 59.816 60.000 0.00 0.00 0.00 3.61
120 124 0.912487 ACGGGGGATAAGCAGGACAA 60.912 55.000 0.00 0.00 0.00 3.18
121 125 1.306654 ACGGGGGATAAGCAGGACA 60.307 57.895 0.00 0.00 0.00 4.02
122 126 1.446366 GACGGGGGATAAGCAGGAC 59.554 63.158 0.00 0.00 0.00 3.85
123 127 2.131709 CGACGGGGGATAAGCAGGA 61.132 63.158 0.00 0.00 0.00 3.86
124 128 2.131709 TCGACGGGGGATAAGCAGG 61.132 63.158 0.00 0.00 0.00 4.85
125 129 1.067582 GTCGACGGGGGATAAGCAG 59.932 63.158 0.00 0.00 0.00 4.24
126 130 1.380785 AGTCGACGGGGGATAAGCA 60.381 57.895 10.46 0.00 0.00 3.91
127 131 1.067582 CAGTCGACGGGGGATAAGC 59.932 63.158 10.46 0.00 0.00 3.09
128 132 0.102481 CACAGTCGACGGGGGATAAG 59.898 60.000 19.84 1.39 0.00 1.73
129 133 0.612732 ACACAGTCGACGGGGGATAA 60.613 55.000 21.99 0.00 0.00 1.75
130 134 1.000521 ACACAGTCGACGGGGGATA 60.001 57.895 21.99 0.00 0.00 2.59
139 143 2.197605 TTCCTCCGCACACAGTCGA 61.198 57.895 0.00 0.00 0.00 4.20
145 149 1.222115 GACACAGTTCCTCCGCACAC 61.222 60.000 0.00 0.00 0.00 3.82
175 179 3.391665 CTACGGCAGAAGGGGCTGG 62.392 68.421 0.00 0.00 41.96 4.85
176 180 2.187946 CTACGGCAGAAGGGGCTG 59.812 66.667 0.00 0.00 43.30 4.85
177 181 2.525284 TACCTACGGCAGAAGGGGCT 62.525 60.000 0.00 0.00 37.18 5.19
178 182 2.029307 CTACCTACGGCAGAAGGGGC 62.029 65.000 0.00 0.00 37.18 5.80
179 183 2.029307 GCTACCTACGGCAGAAGGGG 62.029 65.000 0.00 0.00 37.18 4.79
220 225 5.936956 CCAGAAAGAATCTTCTAGCAACAGT 59.063 40.000 0.00 0.00 35.73 3.55
377 384 2.745821 CAAGGGACATGACACATGACAG 59.254 50.000 16.86 0.00 0.00 3.51
523 688 6.037940 GTCGTTAGGGAAGCTTAAAATTAGGG 59.962 42.308 0.00 0.00 0.00 3.53
540 705 1.754803 TGCCTATCCACTGTCGTTAGG 59.245 52.381 5.49 5.49 33.93 2.69
559 724 4.379082 GGGTTCGTTATGCCTAACTGTTTG 60.379 45.833 9.75 0.00 35.98 2.93
660 840 7.004086 TCACAAGAACAAATAAAGGACCTCAT 58.996 34.615 0.00 0.00 0.00 2.90
662 842 6.877611 TCACAAGAACAAATAAAGGACCTC 57.122 37.500 0.00 0.00 0.00 3.85
663 843 7.060421 TCTTCACAAGAACAAATAAAGGACCT 58.940 34.615 0.00 0.00 33.83 3.85
664 844 7.272037 TCTTCACAAGAACAAATAAAGGACC 57.728 36.000 0.00 0.00 33.83 4.46
667 868 7.147312 TGCATCTTCACAAGAACAAATAAAGG 58.853 34.615 0.00 0.00 41.63 3.11
776 1010 4.156556 TCTGGAGGAAATGAATTTTGCGAG 59.843 41.667 0.00 0.00 40.32 5.03
920 1158 6.073873 GCAGAGATATGTGTTAAGATGTGCTC 60.074 42.308 0.00 0.00 0.00 4.26
957 1203 1.356527 AAAGGATTGTCGTACGCGGC 61.357 55.000 12.47 1.19 43.99 6.53
960 1206 0.096454 GGCAAAGGATTGTCGTACGC 59.904 55.000 11.24 6.57 38.85 4.42
1260 1510 5.414360 CAGAAACGAGAGAAGATGATCCAA 58.586 41.667 0.00 0.00 0.00 3.53
1282 1538 4.660771 AGAAGAAGAAAGAAGAAGGACCCA 59.339 41.667 0.00 0.00 0.00 4.51
1426 1696 9.204337 TGGTATGGTGTTGTACAGTATTATAGT 57.796 33.333 0.00 0.00 0.00 2.12
1429 1699 8.710239 TGATGGTATGGTGTTGTACAGTATTAT 58.290 33.333 0.00 0.00 0.00 1.28
1430 1700 8.080363 TGATGGTATGGTGTTGTACAGTATTA 57.920 34.615 0.00 0.00 0.00 0.98
1431 1701 6.953101 TGATGGTATGGTGTTGTACAGTATT 58.047 36.000 0.00 0.00 0.00 1.89
1432 1702 6.553953 TGATGGTATGGTGTTGTACAGTAT 57.446 37.500 0.00 0.00 0.00 2.12
1433 1703 6.553953 ATGATGGTATGGTGTTGTACAGTA 57.446 37.500 0.00 0.00 0.00 2.74
1434 1704 4.901197 TGATGGTATGGTGTTGTACAGT 57.099 40.909 0.00 0.00 0.00 3.55
1435 1705 5.296780 GGAATGATGGTATGGTGTTGTACAG 59.703 44.000 0.00 0.00 0.00 2.74
1436 1706 5.189928 GGAATGATGGTATGGTGTTGTACA 58.810 41.667 0.00 0.00 0.00 2.90
1437 1707 4.578928 GGGAATGATGGTATGGTGTTGTAC 59.421 45.833 0.00 0.00 0.00 2.90
1438 1708 4.228438 TGGGAATGATGGTATGGTGTTGTA 59.772 41.667 0.00 0.00 0.00 2.41
1439 1709 3.011144 TGGGAATGATGGTATGGTGTTGT 59.989 43.478 0.00 0.00 0.00 3.32
1440 1710 3.381272 GTGGGAATGATGGTATGGTGTTG 59.619 47.826 0.00 0.00 0.00 3.33
1441 1711 3.631250 GTGGGAATGATGGTATGGTGTT 58.369 45.455 0.00 0.00 0.00 3.32
1442 1712 2.421388 CGTGGGAATGATGGTATGGTGT 60.421 50.000 0.00 0.00 0.00 4.16
1443 1713 2.158827 TCGTGGGAATGATGGTATGGTG 60.159 50.000 0.00 0.00 0.00 4.17
1444 1714 2.104792 CTCGTGGGAATGATGGTATGGT 59.895 50.000 0.00 0.00 0.00 3.55
1445 1715 2.368548 TCTCGTGGGAATGATGGTATGG 59.631 50.000 0.00 0.00 0.00 2.74
1446 1716 3.751479 TCTCGTGGGAATGATGGTATG 57.249 47.619 0.00 0.00 0.00 2.39
1447 1717 4.771114 TTTCTCGTGGGAATGATGGTAT 57.229 40.909 0.00 0.00 0.00 2.73
1448 1718 4.561500 TTTTCTCGTGGGAATGATGGTA 57.438 40.909 0.00 0.00 0.00 3.25
1449 1719 3.433306 TTTTCTCGTGGGAATGATGGT 57.567 42.857 0.00 0.00 0.00 3.55
1450 1720 3.002656 CGATTTTCTCGTGGGAATGATGG 59.997 47.826 0.00 0.00 42.56 3.51
1451 1721 4.201208 CGATTTTCTCGTGGGAATGATG 57.799 45.455 0.00 0.00 42.56 3.07
1478 1748 2.787625 ACATTGATGGGGATGAGGATGT 59.212 45.455 0.00 0.00 0.00 3.06
1484 1754 1.102809 GCGCACATTGATGGGGATGA 61.103 55.000 0.30 0.00 33.30 2.92
1497 1767 0.674534 AAATTTTAACCCCGCGCACA 59.325 45.000 8.75 0.00 0.00 4.57
1513 1783 1.552578 GTTTAGGGGACGGGCAAAAT 58.447 50.000 0.00 0.00 0.00 1.82
1546 1816 3.169378 GGGTTCCCCGTGGGTTTA 58.831 61.111 3.83 0.00 44.74 2.01
1569 1839 4.572795 TGTTGTTTTCATTGACTGCTCGTA 59.427 37.500 0.00 0.00 0.00 3.43
1609 1879 4.382685 GCCTAATGCCGTAATATGCTCCTA 60.383 45.833 0.00 0.00 0.00 2.94
1623 1893 3.272334 CAGCCGTCGCCTAATGCC 61.272 66.667 0.00 0.00 36.24 4.40
1649 1920 4.907579 ACAAAACACGTAAACCTAAACCG 58.092 39.130 0.00 0.00 0.00 4.44
1662 1933 1.740585 TCTCCCACACAACAAAACACG 59.259 47.619 0.00 0.00 0.00 4.49
1668 1939 1.694150 CCTCTCTCTCCCACACAACAA 59.306 52.381 0.00 0.00 0.00 2.83
1676 1947 0.398239 CATGAGGCCTCTCTCTCCCA 60.398 60.000 32.28 11.70 40.58 4.37
1692 1963 2.796425 GCAGTGTCGCTCGCTCATG 61.796 63.158 0.00 0.00 34.33 3.07
1694 1965 3.903932 CTGCAGTGTCGCTCGCTCA 62.904 63.158 5.25 0.00 34.33 4.26
1716 1987 1.106944 CAAACCAACCCCTTGCTCGT 61.107 55.000 0.00 0.00 0.00 4.18
1722 1993 3.506398 CTGGAATACAAACCAACCCCTT 58.494 45.455 0.00 0.00 35.67 3.95
1768 2039 3.740128 AAGCCATAGCACCCGAGCG 62.740 63.158 0.00 0.00 43.56 5.03
1799 2070 5.579753 AGCATTCACCAATCCATCTAGAT 57.420 39.130 0.00 0.00 0.00 1.98
1802 2073 7.953005 TTTTTAGCATTCACCAATCCATCTA 57.047 32.000 0.00 0.00 0.00 1.98
1825 2097 7.363443 CCCGACAATACCCATCAAATAAGTTTT 60.363 37.037 0.00 0.00 0.00 2.43
1828 2100 5.130350 CCCGACAATACCCATCAAATAAGT 58.870 41.667 0.00 0.00 0.00 2.24
1829 2101 5.130350 ACCCGACAATACCCATCAAATAAG 58.870 41.667 0.00 0.00 0.00 1.73
1831 2103 4.781775 ACCCGACAATACCCATCAAATA 57.218 40.909 0.00 0.00 0.00 1.40
1832 2104 3.662759 ACCCGACAATACCCATCAAAT 57.337 42.857 0.00 0.00 0.00 2.32
1838 2110 0.036199 CCGAAACCCGACAATACCCA 60.036 55.000 0.00 0.00 41.76 4.51
1843 2115 0.108963 TGAACCCGAAACCCGACAAT 59.891 50.000 0.00 0.00 41.76 2.71
1862 2134 6.430925 GGTTTAAACCCGTTTGAGTATTACCT 59.569 38.462 24.50 0.00 43.43 3.08
1894 2166 6.892456 TGGTTACATTATAAAACCCTGCATGA 59.108 34.615 12.83 0.00 41.66 3.07
1900 2172 6.722129 TGCTTGTGGTTACATTATAAAACCCT 59.278 34.615 12.83 0.00 41.66 4.34
1989 2262 3.272847 AATGGGGCCCCGAAACCT 61.273 61.111 36.00 13.19 39.42 3.50
2022 2295 2.354305 ACAACCTGCGACGACGTC 60.354 61.111 18.04 18.04 41.98 4.34
2023 2296 2.354305 GACAACCTGCGACGACGT 60.354 61.111 9.33 0.00 41.98 4.34
2024 2297 3.103911 GGACAACCTGCGACGACG 61.104 66.667 2.12 2.12 42.93 5.12
2025 2298 0.949105 AATGGACAACCTGCGACGAC 60.949 55.000 0.00 0.00 37.04 4.34
2026 2299 0.604073 TAATGGACAACCTGCGACGA 59.396 50.000 0.00 0.00 37.04 4.20
2027 2300 1.327460 CATAATGGACAACCTGCGACG 59.673 52.381 0.00 0.00 37.04 5.12
2028 2301 1.670811 CCATAATGGACAACCTGCGAC 59.329 52.381 0.00 0.00 40.96 5.19
2029 2302 2.016604 GCCATAATGGACAACCTGCGA 61.017 52.381 0.00 0.00 40.96 5.10
2030 2303 0.381801 GCCATAATGGACAACCTGCG 59.618 55.000 0.00 0.00 40.96 5.18
2031 2304 1.406539 CAGCCATAATGGACAACCTGC 59.593 52.381 0.00 0.00 40.96 4.85
2032 2305 2.026641 CCAGCCATAATGGACAACCTG 58.973 52.381 0.00 0.00 40.96 4.00
2033 2306 1.686115 GCCAGCCATAATGGACAACCT 60.686 52.381 0.00 0.00 40.96 3.50
2034 2307 0.746659 GCCAGCCATAATGGACAACC 59.253 55.000 0.00 0.00 40.96 3.77
2035 2308 1.678101 GAGCCAGCCATAATGGACAAC 59.322 52.381 0.00 0.00 40.96 3.32
2036 2309 1.565759 AGAGCCAGCCATAATGGACAA 59.434 47.619 0.00 0.00 40.96 3.18
2037 2310 1.216064 AGAGCCAGCCATAATGGACA 58.784 50.000 0.00 0.00 40.96 4.02
2038 2311 2.873649 GCTAGAGCCAGCCATAATGGAC 60.874 54.545 0.00 0.00 40.51 4.02
2039 2312 1.349026 GCTAGAGCCAGCCATAATGGA 59.651 52.381 0.00 0.00 40.51 3.41
2040 2313 1.818642 GCTAGAGCCAGCCATAATGG 58.181 55.000 0.00 0.00 41.04 3.16
2052 2325 1.749258 CCAAAACCCGGGCTAGAGC 60.749 63.158 24.08 0.00 41.14 4.09
2053 2326 0.676782 CACCAAAACCCGGGCTAGAG 60.677 60.000 24.08 9.92 0.00 2.43
2054 2327 1.377229 CACCAAAACCCGGGCTAGA 59.623 57.895 24.08 0.00 0.00 2.43
2055 2328 1.677633 CCACCAAAACCCGGGCTAG 60.678 63.158 24.08 8.26 0.00 3.42
2056 2329 2.437002 CCACCAAAACCCGGGCTA 59.563 61.111 24.08 0.00 0.00 3.93
2059 2332 3.302344 CTGCCACCAAAACCCGGG 61.302 66.667 22.25 22.25 0.00 5.73
2060 2333 3.302344 CCTGCCACCAAAACCCGG 61.302 66.667 0.00 0.00 0.00 5.73
2061 2334 1.805428 CTTCCTGCCACCAAAACCCG 61.805 60.000 0.00 0.00 0.00 5.28
2062 2335 0.759060 ACTTCCTGCCACCAAAACCC 60.759 55.000 0.00 0.00 0.00 4.11
2063 2336 1.119684 AACTTCCTGCCACCAAAACC 58.880 50.000 0.00 0.00 0.00 3.27
2064 2337 1.806247 GCAACTTCCTGCCACCAAAAC 60.806 52.381 0.00 0.00 36.25 2.43
2065 2338 0.463620 GCAACTTCCTGCCACCAAAA 59.536 50.000 0.00 0.00 36.25 2.44
2066 2339 1.733402 CGCAACTTCCTGCCACCAAA 61.733 55.000 0.00 0.00 39.26 3.28
2067 2340 2.192861 CGCAACTTCCTGCCACCAA 61.193 57.895 0.00 0.00 39.26 3.67
2068 2341 2.594303 CGCAACTTCCTGCCACCA 60.594 61.111 0.00 0.00 39.26 4.17
2069 2342 2.130073 GAACGCAACTTCCTGCCACC 62.130 60.000 0.00 0.00 39.26 4.61
2070 2343 1.282875 GAACGCAACTTCCTGCCAC 59.717 57.895 0.00 0.00 39.26 5.01
2071 2344 2.250939 CGAACGCAACTTCCTGCCA 61.251 57.895 0.00 0.00 39.26 4.92
2072 2345 2.556287 CGAACGCAACTTCCTGCC 59.444 61.111 0.00 0.00 39.26 4.85
2073 2346 2.127232 GCGAACGCAACTTCCTGC 60.127 61.111 14.26 0.00 41.49 4.85
2074 2347 1.205064 CAGCGAACGCAACTTCCTG 59.795 57.895 20.66 5.12 44.88 3.86
2075 2348 2.607892 GCAGCGAACGCAACTTCCT 61.608 57.895 20.66 0.00 44.88 3.36
2076 2349 2.127232 GCAGCGAACGCAACTTCC 60.127 61.111 20.66 0.00 44.88 3.46
2077 2350 2.497628 CGCAGCGAACGCAACTTC 60.498 61.111 20.66 4.48 44.88 3.01
2078 2351 4.012895 CCGCAGCGAACGCAACTT 62.013 61.111 18.75 0.00 44.88 2.66
2090 2363 3.402681 ATCACCACCTCCCCGCAG 61.403 66.667 0.00 0.00 0.00 5.18
2091 2364 3.716195 CATCACCACCTCCCCGCA 61.716 66.667 0.00 0.00 0.00 5.69
2093 2366 3.402681 AGCATCACCACCTCCCCG 61.403 66.667 0.00 0.00 0.00 5.73
2094 2367 2.273449 CAGCATCACCACCTCCCC 59.727 66.667 0.00 0.00 0.00 4.81
2095 2368 2.439156 GCAGCATCACCACCTCCC 60.439 66.667 0.00 0.00 0.00 4.30
2096 2369 1.001641 AAGCAGCATCACCACCTCC 60.002 57.895 0.00 0.00 0.00 4.30
2097 2370 1.364626 CGAAGCAGCATCACCACCTC 61.365 60.000 0.00 0.00 0.00 3.85
2098 2371 1.376424 CGAAGCAGCATCACCACCT 60.376 57.895 0.00 0.00 0.00 4.00
2099 2372 1.639298 GACGAAGCAGCATCACCACC 61.639 60.000 0.00 0.00 0.00 4.61
2100 2373 1.639298 GGACGAAGCAGCATCACCAC 61.639 60.000 0.00 0.00 0.00 4.16
2101 2374 1.375908 GGACGAAGCAGCATCACCA 60.376 57.895 0.00 0.00 0.00 4.17
2102 2375 2.109126 GGGACGAAGCAGCATCACC 61.109 63.158 0.00 0.00 0.00 4.02
2103 2376 3.490890 GGGACGAAGCAGCATCAC 58.509 61.111 0.00 0.00 0.00 3.06
2127 2400 1.815421 CTGTCCCTGGCGAAATCCG 60.815 63.158 0.00 0.00 42.21 4.18
2128 2401 0.744771 GACTGTCCCTGGCGAAATCC 60.745 60.000 0.00 0.00 0.00 3.01
2129 2402 0.036388 TGACTGTCCCTGGCGAAATC 60.036 55.000 5.17 0.00 0.00 2.17
2130 2403 0.620556 ATGACTGTCCCTGGCGAAAT 59.379 50.000 5.17 0.00 0.00 2.17
2131 2404 0.321564 CATGACTGTCCCTGGCGAAA 60.322 55.000 5.17 0.00 0.00 3.46
2132 2405 1.296392 CATGACTGTCCCTGGCGAA 59.704 57.895 5.17 0.00 0.00 4.70
2133 2406 1.888436 GACATGACTGTCCCTGGCGA 61.888 60.000 5.17 0.00 45.06 5.54
2134 2407 1.448540 GACATGACTGTCCCTGGCG 60.449 63.158 5.17 0.00 45.06 5.69
2135 2408 4.625800 GACATGACTGTCCCTGGC 57.374 61.111 5.17 1.43 45.06 4.85
2141 2414 3.075998 CAGCGCGACATGACTGTC 58.924 61.111 12.10 0.00 46.89 3.51
2142 2415 3.114616 GCAGCGCGACATGACTGT 61.115 61.111 12.10 0.00 38.67 3.55
2143 2416 3.857854 GGCAGCGCGACATGACTG 61.858 66.667 12.10 7.65 0.00 3.51
2165 2438 4.373116 CACCCTCACCACCGGACG 62.373 72.222 9.46 0.00 0.00 4.79
2166 2439 4.699522 GCACCCTCACCACCGGAC 62.700 72.222 9.46 0.00 0.00 4.79
2167 2440 4.954118 AGCACCCTCACCACCGGA 62.954 66.667 9.46 0.00 0.00 5.14
2168 2441 4.394712 GAGCACCCTCACCACCGG 62.395 72.222 0.00 0.00 38.03 5.28
2169 2442 3.596066 CTGAGCACCCTCACCACCG 62.596 68.421 0.00 0.00 42.98 4.94
2170 2443 1.557269 ATCTGAGCACCCTCACCACC 61.557 60.000 0.00 0.00 42.98 4.61
2171 2444 0.392193 CATCTGAGCACCCTCACCAC 60.392 60.000 0.00 0.00 42.98 4.16
2172 2445 1.556373 CCATCTGAGCACCCTCACCA 61.556 60.000 0.00 0.00 42.98 4.17
2173 2446 1.222936 CCATCTGAGCACCCTCACC 59.777 63.158 0.00 0.00 42.98 4.02
2174 2447 0.835941 ATCCATCTGAGCACCCTCAC 59.164 55.000 0.00 0.00 42.98 3.51
2175 2448 1.126488 GATCCATCTGAGCACCCTCA 58.874 55.000 0.00 0.00 45.54 3.86
2176 2449 1.422531 AGATCCATCTGAGCACCCTC 58.577 55.000 0.00 0.00 35.42 4.30
2177 2450 3.650899 AGATCCATCTGAGCACCCT 57.349 52.632 0.00 0.00 35.42 4.34
2186 2459 7.694093 AGGTAAAGAAAAGAACAGATCCATCT 58.306 34.615 0.00 0.00 37.72 2.90
2187 2460 7.929941 AGGTAAAGAAAAGAACAGATCCATC 57.070 36.000 0.00 0.00 0.00 3.51
2188 2461 8.712228 AAAGGTAAAGAAAAGAACAGATCCAT 57.288 30.769 0.00 0.00 0.00 3.41
2189 2462 8.533569 AAAAGGTAAAGAAAAGAACAGATCCA 57.466 30.769 0.00 0.00 0.00 3.41
2192 2465 9.946165 CGTAAAAAGGTAAAGAAAAGAACAGAT 57.054 29.630 0.00 0.00 0.00 2.90
2193 2466 8.400186 CCGTAAAAAGGTAAAGAAAAGAACAGA 58.600 33.333 0.00 0.00 0.00 3.41
2194 2467 8.400186 TCCGTAAAAAGGTAAAGAAAAGAACAG 58.600 33.333 0.00 0.00 0.00 3.16
2195 2468 8.278729 TCCGTAAAAAGGTAAAGAAAAGAACA 57.721 30.769 0.00 0.00 0.00 3.18
2196 2469 9.740239 ATTCCGTAAAAAGGTAAAGAAAAGAAC 57.260 29.630 0.00 0.00 0.00 3.01
2200 2473 9.235537 CGAAATTCCGTAAAAAGGTAAAGAAAA 57.764 29.630 0.00 0.00 0.00 2.29
2201 2474 8.404765 ACGAAATTCCGTAAAAAGGTAAAGAAA 58.595 29.630 0.00 0.00 41.44 2.52
2202 2475 7.929159 ACGAAATTCCGTAAAAAGGTAAAGAA 58.071 30.769 0.00 0.00 41.44 2.52
2203 2476 7.495135 ACGAAATTCCGTAAAAAGGTAAAGA 57.505 32.000 0.00 0.00 41.44 2.52
2204 2477 9.321590 CTAACGAAATTCCGTAAAAAGGTAAAG 57.678 33.333 0.00 0.00 42.54 1.85
2205 2478 9.050601 TCTAACGAAATTCCGTAAAAAGGTAAA 57.949 29.630 0.00 0.00 42.54 2.01
2206 2479 8.600449 TCTAACGAAATTCCGTAAAAAGGTAA 57.400 30.769 0.00 0.00 42.54 2.85
2207 2480 8.658609 CATCTAACGAAATTCCGTAAAAAGGTA 58.341 33.333 0.00 0.00 42.54 3.08
2208 2481 7.361457 CCATCTAACGAAATTCCGTAAAAAGGT 60.361 37.037 0.00 0.00 42.54 3.50
2209 2482 6.964934 CCATCTAACGAAATTCCGTAAAAAGG 59.035 38.462 0.00 0.00 42.54 3.11
2210 2483 7.480542 CACCATCTAACGAAATTCCGTAAAAAG 59.519 37.037 0.00 0.00 42.54 2.27
2211 2484 7.299586 CACCATCTAACGAAATTCCGTAAAAA 58.700 34.615 0.00 0.00 42.54 1.94
2212 2485 6.128227 CCACCATCTAACGAAATTCCGTAAAA 60.128 38.462 0.00 0.00 42.54 1.52
2213 2486 5.352016 CCACCATCTAACGAAATTCCGTAAA 59.648 40.000 0.00 0.00 42.54 2.01
2214 2487 4.871557 CCACCATCTAACGAAATTCCGTAA 59.128 41.667 0.00 0.00 42.54 3.18
2215 2488 4.435425 CCACCATCTAACGAAATTCCGTA 58.565 43.478 0.00 0.00 42.54 4.02
2216 2489 3.267483 CCACCATCTAACGAAATTCCGT 58.733 45.455 0.00 0.00 45.64 4.69
2217 2490 2.612212 CCCACCATCTAACGAAATTCCG 59.388 50.000 0.00 0.00 0.00 4.30
2218 2491 2.949644 CCCCACCATCTAACGAAATTCC 59.050 50.000 0.00 0.00 0.00 3.01
2219 2492 3.877508 CTCCCCACCATCTAACGAAATTC 59.122 47.826 0.00 0.00 0.00 2.17
2220 2493 3.886123 CTCCCCACCATCTAACGAAATT 58.114 45.455 0.00 0.00 0.00 1.82
2221 2494 2.421529 GCTCCCCACCATCTAACGAAAT 60.422 50.000 0.00 0.00 0.00 2.17
2222 2495 1.065709 GCTCCCCACCATCTAACGAAA 60.066 52.381 0.00 0.00 0.00 3.46
2223 2496 0.539986 GCTCCCCACCATCTAACGAA 59.460 55.000 0.00 0.00 0.00 3.85
2224 2497 0.325296 AGCTCCCCACCATCTAACGA 60.325 55.000 0.00 0.00 0.00 3.85
2225 2498 0.105039 GAGCTCCCCACCATCTAACG 59.895 60.000 0.87 0.00 0.00 3.18
2226 2499 1.414550 GAGAGCTCCCCACCATCTAAC 59.585 57.143 10.93 0.00 0.00 2.34
2227 2500 1.794714 GAGAGCTCCCCACCATCTAA 58.205 55.000 10.93 0.00 0.00 2.10
2228 2501 0.468214 CGAGAGCTCCCCACCATCTA 60.468 60.000 10.93 0.00 0.00 1.98
2229 2502 1.760086 CGAGAGCTCCCCACCATCT 60.760 63.158 10.93 0.00 0.00 2.90
2230 2503 2.818132 CGAGAGCTCCCCACCATC 59.182 66.667 10.93 0.00 0.00 3.51
2242 2515 1.593006 ACTTTGTTCAACGTGCGAGAG 59.407 47.619 0.00 0.00 0.00 3.20
2243 2516 1.647346 ACTTTGTTCAACGTGCGAGA 58.353 45.000 0.00 0.00 0.00 4.04
2244 2517 2.452006 AACTTTGTTCAACGTGCGAG 57.548 45.000 0.00 0.00 0.00 5.03
2245 2518 2.904011 AAACTTTGTTCAACGTGCGA 57.096 40.000 0.00 0.00 0.00 5.10
2246 2519 4.523813 AGATAAACTTTGTTCAACGTGCG 58.476 39.130 0.00 0.00 0.00 5.34
2247 2520 5.968848 TGAAGATAAACTTTGTTCAACGTGC 59.031 36.000 0.00 0.00 39.13 5.34
2248 2521 7.186804 AGTGAAGATAAACTTTGTTCAACGTG 58.813 34.615 0.00 0.00 39.13 4.49
2249 2522 7.316544 AGTGAAGATAAACTTTGTTCAACGT 57.683 32.000 0.00 0.00 39.13 3.99
2250 2523 7.908082 TGAAGTGAAGATAAACTTTGTTCAACG 59.092 33.333 0.00 0.00 39.13 4.10
2251 2524 9.010366 GTGAAGTGAAGATAAACTTTGTTCAAC 57.990 33.333 0.00 0.00 39.13 3.18
2252 2525 8.956426 AGTGAAGTGAAGATAAACTTTGTTCAA 58.044 29.630 0.00 0.00 39.13 2.69
2253 2526 8.506168 AGTGAAGTGAAGATAAACTTTGTTCA 57.494 30.769 0.00 0.00 39.13 3.18
2254 2527 9.865484 GTAGTGAAGTGAAGATAAACTTTGTTC 57.135 33.333 0.00 0.00 39.13 3.18
2255 2528 8.837389 GGTAGTGAAGTGAAGATAAACTTTGTT 58.163 33.333 0.00 0.00 39.13 2.83
2256 2529 7.990886 TGGTAGTGAAGTGAAGATAAACTTTGT 59.009 33.333 0.00 0.00 39.13 2.83
2257 2530 8.378172 TGGTAGTGAAGTGAAGATAAACTTTG 57.622 34.615 0.00 0.00 39.13 2.77
2258 2531 9.574516 AATGGTAGTGAAGTGAAGATAAACTTT 57.425 29.630 0.00 0.00 39.13 2.66
2265 2538 8.918202 TTGTTTAATGGTAGTGAAGTGAAGAT 57.082 30.769 0.00 0.00 0.00 2.40
2266 2539 8.918202 ATTGTTTAATGGTAGTGAAGTGAAGA 57.082 30.769 0.00 0.00 0.00 2.87
2267 2540 8.783093 TGATTGTTTAATGGTAGTGAAGTGAAG 58.217 33.333 0.00 0.00 0.00 3.02
2268 2541 8.684386 TGATTGTTTAATGGTAGTGAAGTGAA 57.316 30.769 0.00 0.00 0.00 3.18
2269 2542 8.684386 TTGATTGTTTAATGGTAGTGAAGTGA 57.316 30.769 0.00 0.00 0.00 3.41
2270 2543 9.180678 GTTTGATTGTTTAATGGTAGTGAAGTG 57.819 33.333 0.00 0.00 0.00 3.16
2271 2544 8.908903 TGTTTGATTGTTTAATGGTAGTGAAGT 58.091 29.630 0.00 0.00 0.00 3.01
2272 2545 9.180678 GTGTTTGATTGTTTAATGGTAGTGAAG 57.819 33.333 0.00 0.00 0.00 3.02
2273 2546 7.858382 CGTGTTTGATTGTTTAATGGTAGTGAA 59.142 33.333 0.00 0.00 0.00 3.18
2274 2547 7.226918 TCGTGTTTGATTGTTTAATGGTAGTGA 59.773 33.333 0.00 0.00 0.00 3.41
2275 2548 7.356540 TCGTGTTTGATTGTTTAATGGTAGTG 58.643 34.615 0.00 0.00 0.00 2.74
2276 2549 7.499321 TCGTGTTTGATTGTTTAATGGTAGT 57.501 32.000 0.00 0.00 0.00 2.73
2277 2550 8.073768 AGTTCGTGTTTGATTGTTTAATGGTAG 58.926 33.333 0.00 0.00 0.00 3.18
2278 2551 7.932335 AGTTCGTGTTTGATTGTTTAATGGTA 58.068 30.769 0.00 0.00 0.00 3.25
2279 2552 6.801575 AGTTCGTGTTTGATTGTTTAATGGT 58.198 32.000 0.00 0.00 0.00 3.55
2280 2553 7.692908 AAGTTCGTGTTTGATTGTTTAATGG 57.307 32.000 0.00 0.00 0.00 3.16
2281 2554 9.019764 AGAAAGTTCGTGTTTGATTGTTTAATG 57.980 29.630 0.00 0.00 0.00 1.90
2282 2555 9.581099 AAGAAAGTTCGTGTTTGATTGTTTAAT 57.419 25.926 0.00 0.00 0.00 1.40
2283 2556 8.973835 AAGAAAGTTCGTGTTTGATTGTTTAA 57.026 26.923 0.00 0.00 0.00 1.52
2284 2557 9.710979 CTAAGAAAGTTCGTGTTTGATTGTTTA 57.289 29.630 0.00 0.00 0.00 2.01
2285 2558 7.700656 CCTAAGAAAGTTCGTGTTTGATTGTTT 59.299 33.333 0.00 0.00 0.00 2.83
2286 2559 7.193595 CCTAAGAAAGTTCGTGTTTGATTGTT 58.806 34.615 0.00 0.00 0.00 2.83
2287 2560 6.238648 CCCTAAGAAAGTTCGTGTTTGATTGT 60.239 38.462 0.00 0.00 0.00 2.71
2288 2561 6.017440 TCCCTAAGAAAGTTCGTGTTTGATTG 60.017 38.462 0.00 0.00 0.00 2.67
2289 2562 6.017357 GTCCCTAAGAAAGTTCGTGTTTGATT 60.017 38.462 0.00 0.00 0.00 2.57
2290 2563 5.469084 GTCCCTAAGAAAGTTCGTGTTTGAT 59.531 40.000 0.00 0.00 0.00 2.57
2291 2564 4.812626 GTCCCTAAGAAAGTTCGTGTTTGA 59.187 41.667 0.00 0.00 0.00 2.69
2292 2565 4.573201 TGTCCCTAAGAAAGTTCGTGTTTG 59.427 41.667 0.00 0.00 0.00 2.93
2293 2566 4.573607 GTGTCCCTAAGAAAGTTCGTGTTT 59.426 41.667 0.00 0.00 0.00 2.83
2294 2567 4.124970 GTGTCCCTAAGAAAGTTCGTGTT 58.875 43.478 0.00 0.00 0.00 3.32
2295 2568 3.493873 GGTGTCCCTAAGAAAGTTCGTGT 60.494 47.826 0.00 0.00 0.00 4.49
2296 2569 3.064931 GGTGTCCCTAAGAAAGTTCGTG 58.935 50.000 0.00 0.00 0.00 4.35
2297 2570 2.701951 TGGTGTCCCTAAGAAAGTTCGT 59.298 45.455 0.00 0.00 0.00 3.85
2298 2571 3.064931 GTGGTGTCCCTAAGAAAGTTCG 58.935 50.000 0.00 0.00 0.00 3.95
2299 2572 3.813724 GTGTGGTGTCCCTAAGAAAGTTC 59.186 47.826 0.00 0.00 0.00 3.01
2300 2573 3.201266 TGTGTGGTGTCCCTAAGAAAGTT 59.799 43.478 0.00 0.00 0.00 2.66
2301 2574 2.775384 TGTGTGGTGTCCCTAAGAAAGT 59.225 45.455 0.00 0.00 0.00 2.66
2302 2575 3.485463 TGTGTGGTGTCCCTAAGAAAG 57.515 47.619 0.00 0.00 0.00 2.62
2303 2576 3.935818 TTGTGTGGTGTCCCTAAGAAA 57.064 42.857 0.00 0.00 0.00 2.52
2304 2577 4.447138 AATTGTGTGGTGTCCCTAAGAA 57.553 40.909 0.00 0.00 0.00 2.52
2305 2578 4.595781 ACTAATTGTGTGGTGTCCCTAAGA 59.404 41.667 0.00 0.00 0.00 2.10
2306 2579 4.906618 ACTAATTGTGTGGTGTCCCTAAG 58.093 43.478 0.00 0.00 0.00 2.18
2307 2580 4.263156 GGACTAATTGTGTGGTGTCCCTAA 60.263 45.833 0.00 0.00 38.31 2.69
2308 2581 3.262405 GGACTAATTGTGTGGTGTCCCTA 59.738 47.826 0.00 0.00 38.31 3.53
2309 2582 2.039879 GGACTAATTGTGTGGTGTCCCT 59.960 50.000 0.00 0.00 38.31 4.20
2310 2583 2.039879 AGGACTAATTGTGTGGTGTCCC 59.960 50.000 0.00 0.00 43.39 4.46
2311 2584 3.074412 CAGGACTAATTGTGTGGTGTCC 58.926 50.000 0.00 0.00 42.88 4.02
2312 2585 3.740115 ACAGGACTAATTGTGTGGTGTC 58.260 45.455 0.00 0.00 0.00 3.67
2313 2586 3.857157 ACAGGACTAATTGTGTGGTGT 57.143 42.857 0.00 0.00 0.00 4.16
2314 2587 5.147330 TCTACAGGACTAATTGTGTGGTG 57.853 43.478 0.00 0.00 0.00 4.17
2315 2588 5.818678 TTCTACAGGACTAATTGTGTGGT 57.181 39.130 0.00 0.00 0.00 4.16
2316 2589 6.655003 ACAATTCTACAGGACTAATTGTGTGG 59.345 38.462 10.52 0.00 45.79 4.17
2317 2590 7.672983 ACAATTCTACAGGACTAATTGTGTG 57.327 36.000 10.52 0.00 45.79 3.82
2318 2591 9.959721 AATACAATTCTACAGGACTAATTGTGT 57.040 29.630 17.86 11.21 46.51 3.72
2378 2651 6.628398 GCGGCTTGGCTCTTATATATACTTCT 60.628 42.308 0.00 0.00 0.00 2.85
2381 2654 4.466370 TGCGGCTTGGCTCTTATATATACT 59.534 41.667 0.00 0.00 0.00 2.12
2408 2681 5.365895 ACTCGGTTTGTAATAGGGCTAGATT 59.634 40.000 0.00 0.00 0.00 2.40
2410 2683 4.284178 ACTCGGTTTGTAATAGGGCTAGA 58.716 43.478 0.00 0.00 0.00 2.43
2474 2747 0.458543 AGCCTATCGTTGACACTGCG 60.459 55.000 0.00 0.00 0.00 5.18
2487 2760 0.377554 CTCAACGTCGTCGAGCCTAT 59.622 55.000 9.47 0.00 40.62 2.57
2541 2814 6.746120 TCGCTGATATCTTTACTAAAGGTCC 58.254 40.000 3.98 0.00 39.01 4.46
2543 2816 7.783042 AGTTCGCTGATATCTTTACTAAAGGT 58.217 34.615 3.98 4.39 39.01 3.50
2577 2850 4.164252 CGTTCTCCACGTGCCTAC 57.836 61.111 10.91 4.25 44.49 3.18
2665 2938 1.271163 TGTCGGGGAATCCAGTTCAAC 60.271 52.381 0.09 0.00 38.64 3.18
2672 2945 1.760613 GTCTACATGTCGGGGAATCCA 59.239 52.381 0.00 0.00 34.36 3.41
2679 2952 1.226974 CAGCCGTCTACATGTCGGG 60.227 63.158 21.80 11.88 45.18 5.14
2681 2954 1.990799 TTTCAGCCGTCTACATGTCG 58.009 50.000 0.00 0.00 0.00 4.35
2720 2993 3.515502 ACTGTCCTATTGAGCAAGCTACA 59.484 43.478 0.00 0.00 0.00 2.74
2740 3013 0.657840 GTTGTTGTCGAAGCTGCACT 59.342 50.000 1.02 0.00 0.00 4.40
2749 3022 1.815840 TTGCGCCAGTTGTTGTCGA 60.816 52.632 4.18 0.00 0.00 4.20
2774 3047 1.267532 GCTCATGCGGTTGTTGATACG 60.268 52.381 0.00 0.00 0.00 3.06
2777 3050 0.608856 TGGCTCATGCGGTTGTTGAT 60.609 50.000 0.00 0.00 40.82 2.57
2781 3054 1.968017 CTGTGGCTCATGCGGTTGT 60.968 57.895 0.00 0.00 40.82 3.32
2799 3072 1.355066 GCTGAAGCTGAGTACCGCAC 61.355 60.000 0.00 0.00 38.21 5.34
2800 3073 1.079819 GCTGAAGCTGAGTACCGCA 60.080 57.895 0.00 0.00 38.21 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.