Multiple sequence alignment - TraesCS3D01G059700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G059700 chr3D 100.000 3524 0 0 1 3524 26164064 26160541 0.000000e+00 6508.0
1 TraesCS3D01G059700 chr3D 90.698 516 46 2 127 642 400750261 400749748 0.000000e+00 686.0
2 TraesCS3D01G059700 chr3D 89.815 324 21 3 2485 2804 26160956 26160641 4.240000e-109 405.0
3 TraesCS3D01G059700 chr3D 89.815 324 21 3 3109 3424 26161580 26161261 4.240000e-109 405.0
4 TraesCS3D01G059700 chr3D 90.503 179 15 2 723 900 87926165 87925988 5.880000e-58 235.0
5 TraesCS3D01G059700 chr3D 88.525 183 16 5 704 883 128213982 128214162 2.130000e-52 217.0
6 TraesCS3D01G059700 chr3A 92.574 808 44 5 1 797 35998688 35997886 0.000000e+00 1146.0
7 TraesCS3D01G059700 chr3A 93.785 724 17 2 2803 3524 35995047 35994350 0.000000e+00 1062.0
8 TraesCS3D01G059700 chr3A 96.341 574 8 2 2232 2804 35995744 35995183 0.000000e+00 931.0
9 TraesCS3D01G059700 chr3A 95.969 521 17 2 1664 2184 35996257 35995741 0.000000e+00 843.0
10 TraesCS3D01G059700 chr3A 89.851 404 7 11 1152 1528 35996778 35996382 4.090000e-134 488.0
11 TraesCS3D01G059700 chr3A 90.282 319 22 4 3109 3426 35995491 35995181 3.270000e-110 409.0
12 TraesCS3D01G059700 chr3A 81.846 325 19 15 2485 2804 35994739 35994450 1.640000e-58 237.0
13 TraesCS3D01G059700 chr3A 95.146 103 5 0 1057 1159 35997863 35997761 2.810000e-36 163.0
14 TraesCS3D01G059700 chr3A 87.500 104 13 0 999 1102 36066341 36066238 1.720000e-23 121.0
15 TraesCS3D01G059700 chr3B 92.418 699 42 5 1658 2353 43422735 43422045 0.000000e+00 987.0
16 TraesCS3D01G059700 chr3B 92.912 649 35 7 978 1618 43423629 43422984 0.000000e+00 933.0
17 TraesCS3D01G059700 chr3B 96.250 480 18 0 2325 2804 43422106 43421627 0.000000e+00 787.0
18 TraesCS3D01G059700 chr3B 91.077 325 17 3 3110 3426 43421945 43421625 2.510000e-116 429.0
19 TraesCS3D01G059700 chr6D 90.095 525 46 5 127 647 6830840 6831362 0.000000e+00 676.0
20 TraesCS3D01G059700 chr6D 89.961 518 49 1 130 647 431451016 431450502 0.000000e+00 665.0
21 TraesCS3D01G059700 chr6D 89.017 519 56 1 129 647 351136878 351136361 2.970000e-180 641.0
22 TraesCS3D01G059700 chr6D 95.062 162 8 0 728 889 145462463 145462624 4.510000e-64 255.0
23 TraesCS3D01G059700 chr6D 83.505 97 12 3 3423 3516 193478864 193478959 1.740000e-13 87.9
24 TraesCS3D01G059700 chr4B 90.800 500 42 3 151 647 40639140 40639638 0.000000e+00 665.0
25 TraesCS3D01G059700 chr6B 89.695 524 49 5 127 647 646633804 646634325 0.000000e+00 664.0
26 TraesCS3D01G059700 chr2D 89.432 511 51 2 127 637 110022224 110022731 2.970000e-180 641.0
27 TraesCS3D01G059700 chr2D 90.426 188 12 5 725 906 582498659 582498472 3.510000e-60 243.0
28 TraesCS3D01G059700 chr2D 91.358 81 7 0 4 84 598329185 598329265 1.030000e-20 111.0
29 TraesCS3D01G059700 chr2D 91.358 81 7 0 4 84 642100740 642100820 1.030000e-20 111.0
30 TraesCS3D01G059700 chr2D 98.039 51 1 0 668 718 560282548 560282598 4.850000e-14 89.8
31 TraesCS3D01G059700 chr7D 88.550 524 58 2 127 649 638565487 638564965 4.960000e-178 634.0
32 TraesCS3D01G059700 chr7D 92.982 57 4 0 665 721 268330796 268330740 2.250000e-12 84.2
33 TraesCS3D01G059700 chr6A 93.827 162 10 0 728 889 201372729 201372890 9.770000e-61 244.0
34 TraesCS3D01G059700 chr6A 94.340 53 3 0 665 717 383956189 383956241 8.110000e-12 82.4
35 TraesCS3D01G059700 chr4D 92.683 164 12 0 726 889 334164554 334164391 1.640000e-58 237.0
36 TraesCS3D01G059700 chr7A 92.169 166 13 0 725 890 498937370 498937205 5.880000e-58 235.0
37 TraesCS3D01G059700 chr7A 94.545 55 2 1 664 718 372129571 372129624 2.250000e-12 84.2
38 TraesCS3D01G059700 chr5A 94.156 154 9 0 737 890 320214396 320214243 5.880000e-58 235.0
39 TraesCS3D01G059700 chr1D 92.121 165 11 1 728 890 242557380 242557544 7.610000e-57 231.0
40 TraesCS3D01G059700 chr7B 90.909 99 9 0 3426 3524 594011168 594011070 2.210000e-27 134.0
41 TraesCS3D01G059700 chr7B 94.444 54 2 1 664 717 305016768 305016716 8.110000e-12 82.4
42 TraesCS3D01G059700 chrUn 87.654 81 10 0 4 84 70364018 70363938 1.040000e-15 95.3
43 TraesCS3D01G059700 chrUn 89.286 56 4 2 664 718 361577600 361577546 6.310000e-08 69.4
44 TraesCS3D01G059700 chr1A 89.231 65 2 4 664 726 461339285 461339224 3.770000e-10 76.8
45 TraesCS3D01G059700 chr1A 90.909 55 4 1 664 717 38371396 38371342 4.880000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G059700 chr3D 26160541 26164064 3523 True 2439.333333 6508 93.21000 1 3524 3 chr3D.!!$R3 3523
1 TraesCS3D01G059700 chr3D 400749748 400750261 513 True 686.000000 686 90.69800 127 642 1 chr3D.!!$R2 515
2 TraesCS3D01G059700 chr3A 35994350 35998688 4338 True 659.875000 1146 91.97425 1 3524 8 chr3A.!!$R2 3523
3 TraesCS3D01G059700 chr3B 43421625 43423629 2004 True 784.000000 987 93.16425 978 3426 4 chr3B.!!$R1 2448
4 TraesCS3D01G059700 chr6D 6830840 6831362 522 False 676.000000 676 90.09500 127 647 1 chr6D.!!$F1 520
5 TraesCS3D01G059700 chr6D 431450502 431451016 514 True 665.000000 665 89.96100 130 647 1 chr6D.!!$R2 517
6 TraesCS3D01G059700 chr6D 351136361 351136878 517 True 641.000000 641 89.01700 129 647 1 chr6D.!!$R1 518
7 TraesCS3D01G059700 chr6B 646633804 646634325 521 False 664.000000 664 89.69500 127 647 1 chr6B.!!$F1 520
8 TraesCS3D01G059700 chr2D 110022224 110022731 507 False 641.000000 641 89.43200 127 637 1 chr2D.!!$F1 510
9 TraesCS3D01G059700 chr7D 638564965 638565487 522 True 634.000000 634 88.55000 127 649 1 chr7D.!!$R2 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
693 712 0.742281 CTTGACCGGGTGCAGATGAG 60.742 60.0 3.30 0.0 0.00 2.90 F
1447 2465 0.372334 CCGCGCTTATTGCTTAACGT 59.628 50.0 5.56 0.0 40.11 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1687 2941 0.251209 AGGAAAAAGGCCGGGAAGTC 60.251 55.0 2.18 0.0 0.00 3.01 R
3203 4600 0.179032 ACGAAACAGGATGGTGTGCA 60.179 50.0 0.00 0.0 27.21 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 42 3.821841 CTCCACGAAGGTTATTTGTTGC 58.178 45.455 0.00 0.00 39.02 4.17
41 43 2.554893 TCCACGAAGGTTATTTGTTGCC 59.445 45.455 0.00 0.00 39.02 4.52
115 127 3.694566 AGGGATTCACGAAGGTTATTTGC 59.305 43.478 0.00 0.00 0.00 3.68
119 131 2.499197 TCACGAAGGTTATTTGCAGCA 58.501 42.857 0.00 0.00 0.00 4.41
179 191 4.624364 CCACGAGCCCAGCACACA 62.624 66.667 0.00 0.00 0.00 3.72
433 445 3.787785 TCTTTATTTAGCATCGCCGTCA 58.212 40.909 0.00 0.00 0.00 4.35
484 496 2.029020 CCAAAACCCTAAGCTTCTTGGC 60.029 50.000 0.00 0.00 0.00 4.52
490 502 1.777272 CCTAAGCTTCTTGGCCCCTAT 59.223 52.381 0.00 0.00 0.00 2.57
518 531 0.793861 GCTAAAACGATCCACACGCA 59.206 50.000 0.00 0.00 0.00 5.24
587 601 1.382420 AGGAGAGCAGCCGGAAGAT 60.382 57.895 5.05 0.00 0.00 2.40
693 712 0.742281 CTTGACCGGGTGCAGATGAG 60.742 60.000 3.30 0.00 0.00 2.90
735 754 8.038944 GGATATTCGCTTATTATGTACTTCCCA 58.961 37.037 0.00 0.00 0.00 4.37
754 773 7.125356 ACTTCCCACGTTCCTAAATATAAGTCT 59.875 37.037 0.00 0.00 0.00 3.24
784 803 6.527023 AGAGATTTCAACATGAACTACGTACG 59.473 38.462 15.01 15.01 35.89 3.67
830 857 8.885494 AGAGTATAGATTCACTCATTTTGCTC 57.115 34.615 4.70 0.00 42.99 4.26
831 858 7.930865 AGAGTATAGATTCACTCATTTTGCTCC 59.069 37.037 4.70 0.00 42.99 4.70
832 859 5.998454 ATAGATTCACTCATTTTGCTCCG 57.002 39.130 0.00 0.00 0.00 4.63
833 860 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
834 861 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
835 862 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
836 863 6.582636 AGATTCACTCATTTTGCTCCGTATA 58.417 36.000 0.00 0.00 0.00 1.47
837 864 7.220030 AGATTCACTCATTTTGCTCCGTATAT 58.780 34.615 0.00 0.00 0.00 0.86
838 865 8.367911 AGATTCACTCATTTTGCTCCGTATATA 58.632 33.333 0.00 0.00 0.00 0.86
839 866 7.946655 TTCACTCATTTTGCTCCGTATATAG 57.053 36.000 0.00 0.00 0.00 1.31
840 867 7.050970 TCACTCATTTTGCTCCGTATATAGT 57.949 36.000 0.00 0.00 0.00 2.12
841 868 7.497595 TCACTCATTTTGCTCCGTATATAGTT 58.502 34.615 0.00 0.00 0.00 2.24
842 869 7.652105 TCACTCATTTTGCTCCGTATATAGTTC 59.348 37.037 0.00 0.00 0.00 3.01
843 870 7.438160 CACTCATTTTGCTCCGTATATAGTTCA 59.562 37.037 0.00 0.00 0.00 3.18
844 871 8.150945 ACTCATTTTGCTCCGTATATAGTTCAT 58.849 33.333 0.00 0.00 0.00 2.57
845 872 9.639601 CTCATTTTGCTCCGTATATAGTTCATA 57.360 33.333 0.00 0.00 0.00 2.15
849 876 8.771920 TTTGCTCCGTATATAGTTCATATTGG 57.228 34.615 0.00 0.00 31.96 3.16
850 877 7.712204 TGCTCCGTATATAGTTCATATTGGA 57.288 36.000 0.00 0.00 34.36 3.53
851 878 8.129496 TGCTCCGTATATAGTTCATATTGGAA 57.871 34.615 0.00 0.00 34.77 3.53
852 879 8.758829 TGCTCCGTATATAGTTCATATTGGAAT 58.241 33.333 0.00 0.00 34.77 3.01
853 880 9.250624 GCTCCGTATATAGTTCATATTGGAATC 57.749 37.037 0.00 0.00 34.77 2.52
884 911 8.943909 AAAGACTTATATTTAGGAACGGAGTG 57.056 34.615 0.00 0.00 45.00 3.51
885 912 7.893124 AGACTTATATTTAGGAACGGAGTGA 57.107 36.000 0.00 0.00 45.00 3.41
886 913 7.942990 AGACTTATATTTAGGAACGGAGTGAG 58.057 38.462 0.00 0.00 45.00 3.51
887 914 7.560626 AGACTTATATTTAGGAACGGAGTGAGT 59.439 37.037 0.00 0.00 45.00 3.41
888 915 8.757982 ACTTATATTTAGGAACGGAGTGAGTA 57.242 34.615 0.00 0.00 45.00 2.59
889 916 9.364653 ACTTATATTTAGGAACGGAGTGAGTAT 57.635 33.333 0.00 0.00 45.00 2.12
892 919 8.701908 ATATTTAGGAACGGAGTGAGTATACA 57.298 34.615 5.50 0.00 45.00 2.29
893 920 6.839124 TTTAGGAACGGAGTGAGTATACAA 57.161 37.500 5.50 0.00 45.00 2.41
894 921 6.839124 TTAGGAACGGAGTGAGTATACAAA 57.161 37.500 5.50 0.00 45.00 2.83
895 922 5.733620 AGGAACGGAGTGAGTATACAAAA 57.266 39.130 5.50 0.00 45.00 2.44
896 923 6.295719 AGGAACGGAGTGAGTATACAAAAT 57.704 37.500 5.50 0.00 45.00 1.82
897 924 7.414222 AGGAACGGAGTGAGTATACAAAATA 57.586 36.000 5.50 0.00 45.00 1.40
898 925 8.019656 AGGAACGGAGTGAGTATACAAAATAT 57.980 34.615 5.50 0.00 45.00 1.28
899 926 8.483758 AGGAACGGAGTGAGTATACAAAATATT 58.516 33.333 5.50 0.00 45.00 1.28
900 927 9.754382 GGAACGGAGTGAGTATACAAAATATTA 57.246 33.333 5.50 0.00 45.00 0.98
922 949 7.786178 TTATTGTTGAGATTTCCATACGGAG 57.214 36.000 0.00 0.00 44.10 4.63
923 950 4.819105 TGTTGAGATTTCCATACGGAGT 57.181 40.909 0.00 0.00 44.10 3.85
935 962 2.723322 TACGGAGTAGCCTAGCAAGA 57.277 50.000 0.00 0.00 45.11 3.02
936 963 1.848652 ACGGAGTAGCCTAGCAAGAA 58.151 50.000 0.00 0.00 41.94 2.52
937 964 2.176889 ACGGAGTAGCCTAGCAAGAAA 58.823 47.619 0.00 0.00 41.94 2.52
938 965 2.565834 ACGGAGTAGCCTAGCAAGAAAA 59.434 45.455 0.00 0.00 41.94 2.29
939 966 3.197983 ACGGAGTAGCCTAGCAAGAAAAT 59.802 43.478 0.00 0.00 41.94 1.82
940 967 3.804873 CGGAGTAGCCTAGCAAGAAAATC 59.195 47.826 0.00 0.00 0.00 2.17
941 968 4.130857 GGAGTAGCCTAGCAAGAAAATCC 58.869 47.826 0.00 0.00 0.00 3.01
942 969 4.141597 GGAGTAGCCTAGCAAGAAAATCCT 60.142 45.833 0.00 0.00 0.00 3.24
943 970 4.775236 AGTAGCCTAGCAAGAAAATCCTG 58.225 43.478 0.00 0.00 0.00 3.86
944 971 2.373224 AGCCTAGCAAGAAAATCCTGC 58.627 47.619 0.00 0.00 0.00 4.85
945 972 2.094675 GCCTAGCAAGAAAATCCTGCA 58.905 47.619 4.00 0.00 0.00 4.41
946 973 2.098770 GCCTAGCAAGAAAATCCTGCAG 59.901 50.000 6.78 6.78 0.00 4.41
947 974 2.098770 CCTAGCAAGAAAATCCTGCAGC 59.901 50.000 8.66 0.00 0.00 5.25
948 975 0.893447 AGCAAGAAAATCCTGCAGCC 59.107 50.000 8.66 0.00 0.00 4.85
949 976 0.893447 GCAAGAAAATCCTGCAGCCT 59.107 50.000 8.66 0.00 0.00 4.58
950 977 2.094675 GCAAGAAAATCCTGCAGCCTA 58.905 47.619 8.66 0.00 0.00 3.93
951 978 2.493278 GCAAGAAAATCCTGCAGCCTAA 59.507 45.455 8.66 0.00 0.00 2.69
952 979 3.056607 GCAAGAAAATCCTGCAGCCTAAA 60.057 43.478 8.66 0.00 0.00 1.85
953 980 4.488879 CAAGAAAATCCTGCAGCCTAAAC 58.511 43.478 8.66 0.00 0.00 2.01
954 981 3.766545 AGAAAATCCTGCAGCCTAAACA 58.233 40.909 8.66 0.00 0.00 2.83
955 982 3.760684 AGAAAATCCTGCAGCCTAAACAG 59.239 43.478 8.66 0.00 0.00 3.16
956 983 3.439857 AAATCCTGCAGCCTAAACAGA 57.560 42.857 8.66 0.00 33.10 3.41
957 984 3.439857 AATCCTGCAGCCTAAACAGAA 57.560 42.857 8.66 0.00 33.10 3.02
958 985 2.185004 TCCTGCAGCCTAAACAGAAC 57.815 50.000 8.66 0.00 33.10 3.01
959 986 1.168714 CCTGCAGCCTAAACAGAACC 58.831 55.000 8.66 0.00 33.10 3.62
960 987 1.545428 CCTGCAGCCTAAACAGAACCA 60.545 52.381 8.66 0.00 33.10 3.67
961 988 2.229792 CTGCAGCCTAAACAGAACCAA 58.770 47.619 0.00 0.00 33.10 3.67
962 989 1.953686 TGCAGCCTAAACAGAACCAAC 59.046 47.619 0.00 0.00 0.00 3.77
963 990 1.069227 GCAGCCTAAACAGAACCAACG 60.069 52.381 0.00 0.00 0.00 4.10
964 991 2.489971 CAGCCTAAACAGAACCAACGA 58.510 47.619 0.00 0.00 0.00 3.85
965 992 2.875933 CAGCCTAAACAGAACCAACGAA 59.124 45.455 0.00 0.00 0.00 3.85
966 993 3.058914 CAGCCTAAACAGAACCAACGAAG 60.059 47.826 0.00 0.00 0.00 3.79
967 994 3.135994 GCCTAAACAGAACCAACGAAGA 58.864 45.455 0.00 0.00 0.00 2.87
968 995 3.059120 GCCTAAACAGAACCAACGAAGAC 60.059 47.826 0.00 0.00 0.00 3.01
969 996 3.183775 CCTAAACAGAACCAACGAAGACG 59.816 47.826 0.00 0.00 45.75 4.18
970 997 1.578583 AACAGAACCAACGAAGACGG 58.421 50.000 0.00 0.00 44.46 4.79
971 998 0.748450 ACAGAACCAACGAAGACGGA 59.252 50.000 0.00 0.00 44.46 4.69
972 999 1.137479 ACAGAACCAACGAAGACGGAA 59.863 47.619 0.00 0.00 44.46 4.30
973 1000 2.206750 CAGAACCAACGAAGACGGAAA 58.793 47.619 0.00 0.00 44.46 3.13
974 1001 2.610374 CAGAACCAACGAAGACGGAAAA 59.390 45.455 0.00 0.00 44.46 2.29
975 1002 3.250040 CAGAACCAACGAAGACGGAAAAT 59.750 43.478 0.00 0.00 44.46 1.82
976 1003 3.250040 AGAACCAACGAAGACGGAAAATG 59.750 43.478 0.00 0.00 44.46 2.32
1056 1083 4.541648 ATCCGCCCTAGGGTCGCT 62.542 66.667 28.96 17.69 37.65 4.93
1431 2449 2.961526 TTGATCTCCTTAGTGTCCGC 57.038 50.000 0.00 0.00 0.00 5.54
1447 2465 0.372334 CCGCGCTTATTGCTTAACGT 59.628 50.000 5.56 0.00 40.11 3.99
1556 2600 5.248870 AGAACTGTAAGGTTTTGCACAAG 57.751 39.130 0.00 0.00 39.30 3.16
1652 2696 9.880064 TTGTTATTCACAATTTATTTTCGACGA 57.120 25.926 0.00 0.00 40.71 4.20
1653 2697 9.320406 TGTTATTCACAATTTATTTTCGACGAC 57.680 29.630 0.00 0.00 29.87 4.34
1654 2698 8.502058 GTTATTCACAATTTATTTTCGACGACG 58.498 33.333 0.00 0.00 41.26 5.12
1655 2699 5.579384 TCACAATTTATTTTCGACGACGT 57.421 34.783 0.00 0.00 40.69 4.34
1656 2700 5.601582 TCACAATTTATTTTCGACGACGTC 58.398 37.500 18.04 18.04 40.69 4.34
1658 2702 4.143052 ACAATTTATTTTCGACGACGTCCC 60.143 41.667 21.63 0.96 40.69 4.46
1659 2703 3.302365 TTTATTTTCGACGACGTCCCT 57.698 42.857 21.63 5.24 40.69 4.20
1660 2704 3.302365 TTATTTTCGACGACGTCCCTT 57.698 42.857 21.63 5.74 40.69 3.95
1662 2706 1.490621 TTTTCGACGACGTCCCTTTC 58.509 50.000 21.63 0.59 40.69 2.62
1723 2977 7.362487 CCTTTTTCCTCTTCCTTCTAAATCTGC 60.362 40.741 0.00 0.00 0.00 4.26
1889 3143 7.920738 ACATCACTCTTACAAGAAGTTTGAAC 58.079 34.615 0.00 0.00 34.03 3.18
1995 3249 1.049289 AGACGAGGGGGACAATAGCC 61.049 60.000 0.00 0.00 0.00 3.93
2115 3369 0.250234 CGTGAGACACCCACCATCAT 59.750 55.000 0.00 0.00 0.00 2.45
2177 3431 2.440627 TGAATGCATATGAGGAGGCAGT 59.559 45.455 6.97 0.00 39.95 4.40
2189 3443 5.525484 TGAGGAGGCAGTAGATTAAACCTA 58.475 41.667 0.00 0.00 0.00 3.08
2320 3577 1.047596 GGATGAGAGCCTGCAGGAGA 61.048 60.000 37.21 14.09 37.39 3.71
2326 3583 4.687215 GCCTGCAGGAGACACGCA 62.687 66.667 37.21 0.00 38.51 5.24
2769 4027 3.119388 GGCATGTGATTTGCTTCTGCTAA 60.119 43.478 0.00 0.00 40.03 3.09
2823 4218 3.004419 TGTTGGAGACGATAGCTATTCGG 59.996 47.826 21.46 12.23 42.67 4.30
2851 4246 5.468409 GCTATATCTTTGGCAGAAGGTCTTC 59.532 44.000 2.69 2.69 39.78 2.87
2904 4299 1.691196 AACAGGTTGTGGGTGACATG 58.309 50.000 0.00 0.00 33.40 3.21
3014 4411 7.897864 ACACACAGTTTAGCTAAGTATTCTCT 58.102 34.615 6.24 0.00 0.00 3.10
3138 4535 1.160137 AGCTGCAGGATTTCGTCAAC 58.840 50.000 17.12 0.00 0.00 3.18
3205 4602 4.233789 TGGCGACAATAAATGTTCTTTGC 58.766 39.130 0.00 0.00 44.12 3.68
3206 4603 4.233789 GGCGACAATAAATGTTCTTTGCA 58.766 39.130 0.00 0.00 44.12 4.08
3207 4604 4.089923 GGCGACAATAAATGTTCTTTGCAC 59.910 41.667 0.00 0.00 44.12 4.57
3208 4605 4.679197 GCGACAATAAATGTTCTTTGCACA 59.321 37.500 0.00 0.00 44.12 4.57
3209 4606 5.387342 GCGACAATAAATGTTCTTTGCACAC 60.387 40.000 0.00 0.00 44.12 3.82
3210 4607 5.116983 CGACAATAAATGTTCTTTGCACACC 59.883 40.000 0.00 0.00 44.12 4.16
3211 4608 5.911752 ACAATAAATGTTCTTTGCACACCA 58.088 33.333 0.00 0.00 40.06 4.17
3212 4609 6.523840 ACAATAAATGTTCTTTGCACACCAT 58.476 32.000 0.00 0.00 40.06 3.55
3213 4610 6.646240 ACAATAAATGTTCTTTGCACACCATC 59.354 34.615 0.00 0.00 40.06 3.51
3214 4611 3.665745 AATGTTCTTTGCACACCATCC 57.334 42.857 0.00 0.00 0.00 3.51
3215 4612 2.363306 TGTTCTTTGCACACCATCCT 57.637 45.000 0.00 0.00 0.00 3.24
3216 4613 1.955778 TGTTCTTTGCACACCATCCTG 59.044 47.619 0.00 0.00 0.00 3.86
3217 4614 1.956477 GTTCTTTGCACACCATCCTGT 59.044 47.619 0.00 0.00 0.00 4.00
3218 4615 2.362077 GTTCTTTGCACACCATCCTGTT 59.638 45.455 0.00 0.00 0.00 3.16
3219 4616 2.665165 TCTTTGCACACCATCCTGTTT 58.335 42.857 0.00 0.00 0.00 2.83
3296 4693 3.762779 ACGTACGTGCCTGTTAAGATAC 58.237 45.455 22.14 0.00 0.00 2.24
3445 4842 0.313672 GAGCATCTCTAGCAGACCCG 59.686 60.000 0.00 0.00 32.26 5.28
3446 4843 0.396417 AGCATCTCTAGCAGACCCGT 60.396 55.000 0.00 0.00 32.26 5.28
3462 4859 0.604511 CCGTTATAATGCCCCGACCC 60.605 60.000 0.00 0.00 0.00 4.46
3472 4869 1.388837 GCCCCGACCCGCAAAATAAT 61.389 55.000 0.00 0.00 0.00 1.28
3493 4890 0.452784 GTCAAAACACAGATCCGCGC 60.453 55.000 0.00 0.00 0.00 6.86
3498 4895 1.626654 AACACAGATCCGCGCGAAAG 61.627 55.000 34.63 15.65 0.00 2.62
3502 4899 2.240500 AGATCCGCGCGAAAGATGC 61.241 57.895 34.63 17.51 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 42 7.596248 AGATTTGATGTTCTTGAAATGTTTCGG 59.404 33.333 1.49 0.00 40.01 4.30
41 43 8.511465 AGATTTGATGTTCTTGAAATGTTTCG 57.489 30.769 1.49 0.00 40.01 3.46
97 109 3.505680 TGCTGCAAATAACCTTCGTGAAT 59.494 39.130 0.00 0.00 0.00 2.57
106 118 1.517039 GCGGCTGCTGCAAATAACC 60.517 57.895 27.51 0.00 41.91 2.85
441 453 0.937699 CGTTCGACGTCTTGGCTTCA 60.938 55.000 14.70 0.00 36.74 3.02
484 496 6.585416 TCGTTTTAGCTTTAGGTTATAGGGG 58.415 40.000 0.00 0.00 0.00 4.79
490 502 6.369615 GTGTGGATCGTTTTAGCTTTAGGTTA 59.630 38.462 0.00 0.00 0.00 2.85
716 735 4.365723 ACGTGGGAAGTACATAATAAGCG 58.634 43.478 0.00 0.00 0.00 4.68
780 799 9.784680 CTAAACTATGTCCATATACATCCGTAC 57.215 37.037 0.00 0.00 40.52 3.67
810 837 5.431765 ACGGAGCAAAATGAGTGAATCTAT 58.568 37.500 0.00 0.00 0.00 1.98
812 839 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
813 840 5.741388 ATACGGAGCAAAATGAGTGAATC 57.259 39.130 0.00 0.00 0.00 2.52
814 841 8.150945 ACTATATACGGAGCAAAATGAGTGAAT 58.849 33.333 0.00 0.00 0.00 2.57
815 842 7.497595 ACTATATACGGAGCAAAATGAGTGAA 58.502 34.615 0.00 0.00 0.00 3.18
816 843 7.050970 ACTATATACGGAGCAAAATGAGTGA 57.949 36.000 0.00 0.00 0.00 3.41
817 844 7.438160 TGAACTATATACGGAGCAAAATGAGTG 59.562 37.037 0.00 0.00 0.00 3.51
818 845 7.497595 TGAACTATATACGGAGCAAAATGAGT 58.502 34.615 0.00 0.00 0.00 3.41
819 846 7.946655 TGAACTATATACGGAGCAAAATGAG 57.053 36.000 0.00 0.00 0.00 2.90
823 850 9.214957 CCAATATGAACTATATACGGAGCAAAA 57.785 33.333 0.00 0.00 31.68 2.44
824 851 8.590204 TCCAATATGAACTATATACGGAGCAAA 58.410 33.333 0.00 0.00 32.52 3.68
825 852 8.129496 TCCAATATGAACTATATACGGAGCAA 57.871 34.615 0.00 0.00 32.52 3.91
826 853 7.712204 TCCAATATGAACTATATACGGAGCA 57.288 36.000 0.00 0.00 32.52 4.26
827 854 9.250624 GATTCCAATATGAACTATATACGGAGC 57.749 37.037 0.00 0.00 36.01 4.70
857 884 9.955102 ACTCCGTTCCTAAATATAAGTCTTTTT 57.045 29.630 0.00 0.00 0.00 1.94
858 885 9.379791 CACTCCGTTCCTAAATATAAGTCTTTT 57.620 33.333 0.00 0.00 0.00 2.27
859 886 8.755977 TCACTCCGTTCCTAAATATAAGTCTTT 58.244 33.333 0.00 0.00 0.00 2.52
860 887 8.302515 TCACTCCGTTCCTAAATATAAGTCTT 57.697 34.615 0.00 0.00 0.00 3.01
861 888 7.560626 ACTCACTCCGTTCCTAAATATAAGTCT 59.439 37.037 0.00 0.00 0.00 3.24
862 889 7.714703 ACTCACTCCGTTCCTAAATATAAGTC 58.285 38.462 0.00 0.00 0.00 3.01
863 890 7.657023 ACTCACTCCGTTCCTAAATATAAGT 57.343 36.000 0.00 0.00 0.00 2.24
866 893 9.797642 TGTATACTCACTCCGTTCCTAAATATA 57.202 33.333 4.17 0.00 0.00 0.86
867 894 8.701908 TGTATACTCACTCCGTTCCTAAATAT 57.298 34.615 4.17 0.00 0.00 1.28
868 895 8.523915 TTGTATACTCACTCCGTTCCTAAATA 57.476 34.615 4.17 0.00 0.00 1.40
869 896 7.414222 TTGTATACTCACTCCGTTCCTAAAT 57.586 36.000 4.17 0.00 0.00 1.40
870 897 6.839124 TTGTATACTCACTCCGTTCCTAAA 57.161 37.500 4.17 0.00 0.00 1.85
871 898 6.839124 TTTGTATACTCACTCCGTTCCTAA 57.161 37.500 4.17 0.00 0.00 2.69
872 899 6.839124 TTTTGTATACTCACTCCGTTCCTA 57.161 37.500 4.17 0.00 0.00 2.94
873 900 5.733620 TTTTGTATACTCACTCCGTTCCT 57.266 39.130 4.17 0.00 0.00 3.36
874 901 8.658499 AATATTTTGTATACTCACTCCGTTCC 57.342 34.615 4.17 0.00 0.00 3.62
896 923 9.489084 CTCCGTATGGAAATCTCAACAATAATA 57.511 33.333 4.92 0.00 45.87 0.98
897 924 7.993183 ACTCCGTATGGAAATCTCAACAATAAT 59.007 33.333 4.92 0.00 45.87 1.28
898 925 7.335627 ACTCCGTATGGAAATCTCAACAATAA 58.664 34.615 4.92 0.00 45.87 1.40
899 926 6.884832 ACTCCGTATGGAAATCTCAACAATA 58.115 36.000 4.92 0.00 45.87 1.90
900 927 5.745227 ACTCCGTATGGAAATCTCAACAAT 58.255 37.500 4.92 0.00 45.87 2.71
901 928 5.160607 ACTCCGTATGGAAATCTCAACAA 57.839 39.130 4.92 0.00 45.87 2.83
902 929 4.819105 ACTCCGTATGGAAATCTCAACA 57.181 40.909 4.92 0.00 45.87 3.33
903 930 4.745620 GCTACTCCGTATGGAAATCTCAAC 59.254 45.833 4.92 0.00 45.87 3.18
904 931 4.202223 GGCTACTCCGTATGGAAATCTCAA 60.202 45.833 4.92 0.00 45.87 3.02
905 932 3.321111 GGCTACTCCGTATGGAAATCTCA 59.679 47.826 4.92 0.00 45.87 3.27
906 933 3.574826 AGGCTACTCCGTATGGAAATCTC 59.425 47.826 4.92 0.00 45.87 2.75
907 934 3.577919 AGGCTACTCCGTATGGAAATCT 58.422 45.455 4.92 0.00 45.87 2.40
908 935 4.618693 GCTAGGCTACTCCGTATGGAAATC 60.619 50.000 4.92 0.00 45.87 2.17
909 936 3.258622 GCTAGGCTACTCCGTATGGAAAT 59.741 47.826 4.92 0.00 45.87 2.17
910 937 2.626743 GCTAGGCTACTCCGTATGGAAA 59.373 50.000 4.92 0.00 45.87 3.13
911 938 2.236766 GCTAGGCTACTCCGTATGGAA 58.763 52.381 4.92 0.00 45.87 3.53
912 939 1.144298 TGCTAGGCTACTCCGTATGGA 59.856 52.381 3.02 3.02 43.88 3.41
913 940 1.617322 TGCTAGGCTACTCCGTATGG 58.383 55.000 0.00 0.00 40.77 2.74
914 941 2.885266 TCTTGCTAGGCTACTCCGTATG 59.115 50.000 0.00 0.00 40.77 2.39
915 942 3.225177 TCTTGCTAGGCTACTCCGTAT 57.775 47.619 0.00 0.00 40.77 3.06
916 943 2.723322 TCTTGCTAGGCTACTCCGTA 57.277 50.000 0.00 0.00 40.77 4.02
917 944 1.848652 TTCTTGCTAGGCTACTCCGT 58.151 50.000 0.00 0.00 40.77 4.69
918 945 2.961526 TTTCTTGCTAGGCTACTCCG 57.038 50.000 0.00 0.00 40.77 4.63
919 946 4.130857 GGATTTTCTTGCTAGGCTACTCC 58.869 47.826 0.00 0.00 0.00 3.85
920 947 4.813697 CAGGATTTTCTTGCTAGGCTACTC 59.186 45.833 0.00 0.00 0.00 2.59
921 948 4.775236 CAGGATTTTCTTGCTAGGCTACT 58.225 43.478 0.00 0.00 0.00 2.57
922 949 3.313803 GCAGGATTTTCTTGCTAGGCTAC 59.686 47.826 4.55 0.00 44.80 3.58
923 950 3.545703 GCAGGATTTTCTTGCTAGGCTA 58.454 45.455 4.55 0.00 44.80 3.93
924 951 2.373224 GCAGGATTTTCTTGCTAGGCT 58.627 47.619 4.55 0.00 44.80 4.58
925 952 2.859526 GCAGGATTTTCTTGCTAGGC 57.140 50.000 4.55 0.00 44.80 3.93
931 958 4.022068 TGTTTAGGCTGCAGGATTTTCTTG 60.022 41.667 17.12 0.00 0.00 3.02
932 959 4.151883 TGTTTAGGCTGCAGGATTTTCTT 58.848 39.130 17.12 0.00 0.00 2.52
933 960 3.760684 CTGTTTAGGCTGCAGGATTTTCT 59.239 43.478 17.12 0.00 0.00 2.52
934 961 3.758554 TCTGTTTAGGCTGCAGGATTTTC 59.241 43.478 17.12 0.00 0.00 2.29
935 962 3.766545 TCTGTTTAGGCTGCAGGATTTT 58.233 40.909 17.12 0.00 0.00 1.82
936 963 3.439857 TCTGTTTAGGCTGCAGGATTT 57.560 42.857 17.12 0.00 0.00 2.17
937 964 3.084786 GTTCTGTTTAGGCTGCAGGATT 58.915 45.455 17.12 0.00 0.00 3.01
938 965 2.619074 GGTTCTGTTTAGGCTGCAGGAT 60.619 50.000 17.12 0.00 0.00 3.24
939 966 1.271379 GGTTCTGTTTAGGCTGCAGGA 60.271 52.381 17.12 0.00 0.00 3.86
940 967 1.168714 GGTTCTGTTTAGGCTGCAGG 58.831 55.000 17.12 0.00 0.00 4.85
941 968 1.896220 TGGTTCTGTTTAGGCTGCAG 58.104 50.000 10.11 10.11 0.00 4.41
942 969 1.953686 GTTGGTTCTGTTTAGGCTGCA 59.046 47.619 0.50 0.00 0.00 4.41
943 970 1.069227 CGTTGGTTCTGTTTAGGCTGC 60.069 52.381 0.00 0.00 0.00 5.25
944 971 2.489971 TCGTTGGTTCTGTTTAGGCTG 58.510 47.619 0.00 0.00 0.00 4.85
945 972 2.922740 TCGTTGGTTCTGTTTAGGCT 57.077 45.000 0.00 0.00 0.00 4.58
946 973 3.059120 GTCTTCGTTGGTTCTGTTTAGGC 60.059 47.826 0.00 0.00 0.00 3.93
947 974 3.183775 CGTCTTCGTTGGTTCTGTTTAGG 59.816 47.826 0.00 0.00 0.00 2.69
948 975 3.183775 CCGTCTTCGTTGGTTCTGTTTAG 59.816 47.826 0.00 0.00 35.01 1.85
949 976 3.125316 CCGTCTTCGTTGGTTCTGTTTA 58.875 45.455 0.00 0.00 35.01 2.01
950 977 1.937899 CCGTCTTCGTTGGTTCTGTTT 59.062 47.619 0.00 0.00 35.01 2.83
951 978 1.137479 TCCGTCTTCGTTGGTTCTGTT 59.863 47.619 0.00 0.00 35.01 3.16
952 979 0.748450 TCCGTCTTCGTTGGTTCTGT 59.252 50.000 0.00 0.00 35.01 3.41
953 980 1.860676 TTCCGTCTTCGTTGGTTCTG 58.139 50.000 0.00 0.00 35.01 3.02
954 981 2.607631 TTTCCGTCTTCGTTGGTTCT 57.392 45.000 0.00 0.00 35.01 3.01
955 982 3.551551 CATTTTCCGTCTTCGTTGGTTC 58.448 45.455 0.00 0.00 35.01 3.62
956 983 2.287368 GCATTTTCCGTCTTCGTTGGTT 60.287 45.455 0.00 0.00 35.01 3.67
957 984 1.265905 GCATTTTCCGTCTTCGTTGGT 59.734 47.619 0.00 0.00 35.01 3.67
958 985 1.724654 CGCATTTTCCGTCTTCGTTGG 60.725 52.381 0.00 0.00 35.01 3.77
959 986 1.070175 ACGCATTTTCCGTCTTCGTTG 60.070 47.619 0.00 0.00 32.83 4.10
960 987 1.223187 ACGCATTTTCCGTCTTCGTT 58.777 45.000 0.00 0.00 32.83 3.85
961 988 2.908817 ACGCATTTTCCGTCTTCGT 58.091 47.368 0.00 0.00 32.83 3.85
1056 1083 3.760035 GAGGAGAAGGTCGCCGCA 61.760 66.667 0.00 0.00 41.52 5.69
1059 1086 2.490685 GTCGAGGAGAAGGTCGCC 59.509 66.667 0.00 0.00 36.52 5.54
1370 2388 3.062639 GTGTCACAACTCACAACTCACAG 59.937 47.826 0.00 0.00 35.04 3.66
1502 2545 7.402941 TCTGATAGGCAAGCCAATATCCTTATA 59.597 37.037 14.40 0.00 38.92 0.98
1583 2627 8.959548 TCACAGTTAATCATGTAAAGATTGCAT 58.040 29.630 0.00 0.00 36.45 3.96
1628 2672 8.502058 CGTCGTCGAAAATAAATTGTGAATAAC 58.498 33.333 0.00 0.00 39.71 1.89
1629 2673 8.222433 ACGTCGTCGAAAATAAATTGTGAATAA 58.778 29.630 9.47 0.00 40.62 1.40
1631 2675 6.595794 ACGTCGTCGAAAATAAATTGTGAAT 58.404 32.000 9.47 0.00 40.62 2.57
1632 2676 5.976586 ACGTCGTCGAAAATAAATTGTGAA 58.023 33.333 9.47 0.00 40.62 3.18
1633 2677 5.388682 GGACGTCGTCGAAAATAAATTGTGA 60.389 40.000 18.61 0.00 40.62 3.58
1634 2678 4.779523 GGACGTCGTCGAAAATAAATTGTG 59.220 41.667 18.61 0.00 40.62 3.33
1636 2680 4.092383 AGGGACGTCGTCGAAAATAAATTG 59.908 41.667 18.61 0.00 40.62 2.32
1639 2683 3.302365 AGGGACGTCGTCGAAAATAAA 57.698 42.857 18.61 0.00 40.62 1.40
1640 2684 3.302365 AAGGGACGTCGTCGAAAATAA 57.698 42.857 18.61 0.00 40.62 1.40
1642 2686 2.064014 GAAAGGGACGTCGTCGAAAAT 58.936 47.619 18.61 4.36 40.62 1.82
1643 2687 1.067516 AGAAAGGGACGTCGTCGAAAA 59.932 47.619 18.61 0.00 40.62 2.29
1646 2690 0.670162 AAAGAAAGGGACGTCGTCGA 59.330 50.000 18.61 0.00 40.62 4.20
1647 2691 1.494824 AAAAGAAAGGGACGTCGTCG 58.505 50.000 18.61 0.00 43.34 5.12
1648 2692 2.097056 CGAAAAAGAAAGGGACGTCGTC 60.097 50.000 17.16 17.16 0.00 4.20
1649 2693 1.862827 CGAAAAAGAAAGGGACGTCGT 59.137 47.619 9.92 0.00 0.00 4.34
1650 2694 2.129607 TCGAAAAAGAAAGGGACGTCG 58.870 47.619 9.92 0.00 0.00 5.12
1652 2696 2.103601 TCCTCGAAAAAGAAAGGGACGT 59.896 45.455 0.00 0.00 0.00 4.34
1653 2697 2.479275 GTCCTCGAAAAAGAAAGGGACG 59.521 50.000 0.00 0.00 33.64 4.79
1654 2698 3.498777 CAGTCCTCGAAAAAGAAAGGGAC 59.501 47.826 6.59 6.59 41.18 4.46
1655 2699 3.389983 TCAGTCCTCGAAAAAGAAAGGGA 59.610 43.478 0.00 0.00 0.00 4.20
1656 2700 3.740115 TCAGTCCTCGAAAAAGAAAGGG 58.260 45.455 0.00 0.00 0.00 3.95
1687 2941 0.251209 AGGAAAAAGGCCGGGAAGTC 60.251 55.000 2.18 0.00 0.00 3.01
1723 2977 8.137437 AGAATTAACATGAAACCTTGTTCACAG 58.863 33.333 0.00 0.00 40.22 3.66
1785 3039 7.229907 GTCAACCTGTTTTAAGATGTTAGGGAA 59.770 37.037 0.00 0.00 0.00 3.97
1786 3040 6.713450 GTCAACCTGTTTTAAGATGTTAGGGA 59.287 38.462 0.00 0.00 0.00 4.20
1787 3041 6.348213 CGTCAACCTGTTTTAAGATGTTAGGG 60.348 42.308 0.00 0.00 0.00 3.53
1788 3042 6.348213 CCGTCAACCTGTTTTAAGATGTTAGG 60.348 42.308 0.00 0.00 0.00 2.69
1790 3044 5.470777 CCCGTCAACCTGTTTTAAGATGTTA 59.529 40.000 0.00 0.00 0.00 2.41
1791 3045 4.277423 CCCGTCAACCTGTTTTAAGATGTT 59.723 41.667 0.00 0.00 0.00 2.71
1792 3046 3.818773 CCCGTCAACCTGTTTTAAGATGT 59.181 43.478 0.00 0.00 0.00 3.06
1889 3143 0.803768 CGACCTCAATCTGCTCACCG 60.804 60.000 0.00 0.00 0.00 4.94
1982 3236 2.195956 GGCAGGCTATTGTCCCCC 59.804 66.667 0.00 0.00 0.00 5.40
1995 3249 2.575993 CGTGACCCTGAGAGGCAG 59.424 66.667 0.00 0.00 44.49 4.85
2115 3369 0.776810 TCCTCATGTTCTTTGGCCCA 59.223 50.000 0.00 0.00 0.00 5.36
2652 3910 6.015519 TGCACAAAAGTATCTTAACAGGCATT 60.016 34.615 0.00 0.00 0.00 3.56
2769 4027 2.354805 GGCCACAACCGAAGATCTTACT 60.355 50.000 8.25 0.00 0.00 2.24
2823 4218 5.221742 ACCTTCTGCCAAAGATATAGCCTAC 60.222 44.000 0.00 0.00 33.93 3.18
2851 4246 3.976942 GCAATGACAAAGTTGTGTAGCTG 59.023 43.478 0.42 0.00 42.43 4.24
2904 4299 1.804748 CTACCCTGGTTGCTTTTCGAC 59.195 52.381 0.00 0.00 0.00 4.20
2940 4335 9.976511 AAAGGTAAAAATACAAGTAAAAGGAGC 57.023 29.630 0.00 0.00 0.00 4.70
3014 4411 0.623723 ATGCCCCCGAGCTAAAGAAA 59.376 50.000 0.00 0.00 0.00 2.52
3125 4522 6.002062 GTCAATCTTTGTTGACGAAATCCT 57.998 37.500 4.28 0.00 45.76 3.24
3138 4535 5.220854 GGATTATGGACGGTGTCAATCTTTG 60.221 44.000 0.00 0.00 33.68 2.77
3194 4591 3.006110 CAGGATGGTGTGCAAAGAACATT 59.994 43.478 0.00 0.00 0.00 2.71
3195 4592 2.559668 CAGGATGGTGTGCAAAGAACAT 59.440 45.455 0.00 0.00 0.00 2.71
3196 4593 1.955778 CAGGATGGTGTGCAAAGAACA 59.044 47.619 0.00 0.00 0.00 3.18
3197 4594 1.956477 ACAGGATGGTGTGCAAAGAAC 59.044 47.619 0.00 0.00 43.62 3.01
3198 4595 2.363306 ACAGGATGGTGTGCAAAGAA 57.637 45.000 0.00 0.00 43.62 2.52
3199 4596 2.363306 AACAGGATGGTGTGCAAAGA 57.637 45.000 0.00 0.00 43.62 2.52
3200 4597 2.605338 CGAAACAGGATGGTGTGCAAAG 60.605 50.000 0.00 0.00 27.21 2.77
3201 4598 1.336440 CGAAACAGGATGGTGTGCAAA 59.664 47.619 0.00 0.00 27.21 3.68
3202 4599 0.950836 CGAAACAGGATGGTGTGCAA 59.049 50.000 0.00 0.00 27.21 4.08
3203 4600 0.179032 ACGAAACAGGATGGTGTGCA 60.179 50.000 0.00 0.00 27.21 4.57
3204 4601 0.951558 AACGAAACAGGATGGTGTGC 59.048 50.000 0.00 0.00 27.21 4.57
3205 4602 2.616376 TCAAACGAAACAGGATGGTGTG 59.384 45.455 0.00 0.00 27.21 3.82
3206 4603 2.878406 CTCAAACGAAACAGGATGGTGT 59.122 45.455 0.00 0.00 27.21 4.16
3207 4604 3.138304 TCTCAAACGAAACAGGATGGTG 58.862 45.455 0.00 0.00 27.21 4.17
3208 4605 3.403038 CTCTCAAACGAAACAGGATGGT 58.597 45.455 0.00 0.00 38.54 3.55
3209 4606 2.160417 GCTCTCAAACGAAACAGGATGG 59.840 50.000 0.00 0.00 43.62 3.51
3210 4607 3.070018 AGCTCTCAAACGAAACAGGATG 58.930 45.455 0.00 0.00 46.00 3.51
3211 4608 3.007398 AGAGCTCTCAAACGAAACAGGAT 59.993 43.478 11.45 0.00 0.00 3.24
3212 4609 2.365617 AGAGCTCTCAAACGAAACAGGA 59.634 45.455 11.45 0.00 0.00 3.86
3213 4610 2.478134 CAGAGCTCTCAAACGAAACAGG 59.522 50.000 14.96 0.00 0.00 4.00
3214 4611 2.478134 CCAGAGCTCTCAAACGAAACAG 59.522 50.000 14.96 0.00 0.00 3.16
3215 4612 2.102420 TCCAGAGCTCTCAAACGAAACA 59.898 45.455 14.96 0.00 0.00 2.83
3216 4613 2.755650 TCCAGAGCTCTCAAACGAAAC 58.244 47.619 14.96 0.00 0.00 2.78
3217 4614 3.259374 AGATCCAGAGCTCTCAAACGAAA 59.741 43.478 14.96 0.00 0.00 3.46
3218 4615 2.828520 AGATCCAGAGCTCTCAAACGAA 59.171 45.455 14.96 0.00 0.00 3.85
3219 4616 2.425312 GAGATCCAGAGCTCTCAAACGA 59.575 50.000 14.96 4.90 40.46 3.85
3274 4671 4.635765 AGTATCTTAACAGGCACGTACGTA 59.364 41.667 22.34 0.00 0.00 3.57
3296 4693 9.121517 CAAGTCAGATAAATAGTTGCACAAAAG 57.878 33.333 0.00 0.00 0.00 2.27
3445 4842 1.232621 GCGGGTCGGGGCATTATAAC 61.233 60.000 0.00 0.00 0.00 1.89
3446 4843 1.071814 GCGGGTCGGGGCATTATAA 59.928 57.895 0.00 0.00 0.00 0.98
3462 4859 5.623264 TCTGTGTTTTGACGATTATTTTGCG 59.377 36.000 0.00 0.00 0.00 4.85
3472 4869 1.144969 GCGGATCTGTGTTTTGACGA 58.855 50.000 2.89 0.00 0.00 4.20
3493 4890 0.811219 TGATCGGGCAGCATCTTTCG 60.811 55.000 0.00 0.00 0.00 3.46
3498 4895 1.596477 GGTCTGATCGGGCAGCATC 60.596 63.158 8.71 0.00 35.86 3.91
3502 4899 4.227134 CGGGGTCTGATCGGGCAG 62.227 72.222 8.71 0.00 37.24 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.