Multiple sequence alignment - TraesCS3D01G059400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G059400 chr3D 100.000 3490 0 0 1 3490 26072324 26075813 0.000000e+00 6445
1 TraesCS3D01G059400 chr3D 85.175 2887 270 61 697 3490 26019998 26017177 0.000000e+00 2815
2 TraesCS3D01G059400 chr3D 85.324 2344 233 56 1218 3490 25987842 25985539 0.000000e+00 2320
3 TraesCS3D01G059400 chr3D 84.247 1587 173 40 1918 3442 25984954 25983383 0.000000e+00 1474
4 TraesCS3D01G059400 chr3D 86.085 424 38 9 2 406 400696379 400696800 1.490000e-118 436
5 TraesCS3D01G059400 chr3D 92.708 288 13 4 881 1164 25988131 25987848 3.240000e-110 409
6 TraesCS3D01G059400 chr3D 88.750 320 31 4 90 407 397922879 397922563 1.520000e-103 387
7 TraesCS3D01G059400 chr3D 95.699 93 4 0 2 94 397923059 397922967 2.170000e-32 150
8 TraesCS3D01G059400 chr3B 92.173 2849 136 19 681 3490 43312585 43315385 0.000000e+00 3945
9 TraesCS3D01G059400 chr3B 86.356 2250 183 30 701 2856 43193119 43190900 0.000000e+00 2340
10 TraesCS3D01G059400 chr3B 87.452 1833 151 37 995 2757 74176639 74178462 0.000000e+00 2037
11 TraesCS3D01G059400 chr3B 89.808 1040 74 6 617 1656 74173217 74174224 0.000000e+00 1304
12 TraesCS3D01G059400 chr3B 84.344 709 72 16 2810 3490 43190853 43190156 0.000000e+00 658
13 TraesCS3D01G059400 chr3B 84.472 644 74 15 2805 3439 74178470 74179096 2.300000e-171 612
14 TraesCS3D01G059400 chr3B 80.149 403 27 10 682 1042 74176255 74176646 5.780000e-63 252
15 TraesCS3D01G059400 chr3B 86.047 129 8 5 486 605 74173115 74173242 2.830000e-26 130
16 TraesCS3D01G059400 chr3A 84.610 2703 279 61 803 3442 35755261 35752633 0.000000e+00 2560
17 TraesCS3D01G059400 chr3A 87.081 1997 160 35 848 2791 35768412 35770363 0.000000e+00 2169
18 TraesCS3D01G059400 chr3A 84.228 596 71 13 2854 3442 35770367 35770946 3.040000e-155 558
19 TraesCS3D01G059400 chr3A 78.199 422 57 24 1 389 423534599 423534180 1.620000e-58 237
20 TraesCS3D01G059400 chrUn 81.066 1257 129 55 2304 3490 321665442 321664225 0.000000e+00 902
21 TraesCS3D01G059400 chrUn 94.737 95 5 0 1 95 95197975 95198069 7.800000e-32 148
22 TraesCS3D01G059400 chr2D 78.063 1404 272 30 1055 2440 17955017 17956402 0.000000e+00 854
23 TraesCS3D01G059400 chr2D 93.814 97 6 0 1 97 206444766 206444670 2.810000e-31 147
24 TraesCS3D01G059400 chr5D 77.658 837 175 12 1234 2066 27261793 27260965 1.870000e-137 499
25 TraesCS3D01G059400 chr5D 86.350 337 40 5 82 413 57825401 57825066 2.560000e-96 363
26 TraesCS3D01G059400 chr4B 85.349 430 44 9 1 413 537372843 537372416 8.950000e-116 427
27 TraesCS3D01G059400 chr7D 85.530 387 41 12 94 468 70727496 70727113 1.170000e-104 390
28 TraesCS3D01G059400 chr7D 87.574 338 34 8 82 413 271926007 271925672 5.460000e-103 385
29 TraesCS3D01G059400 chr7D 82.648 438 37 19 1 407 222136531 222136960 5.540000e-93 351
30 TraesCS3D01G059400 chr7B 86.944 337 36 7 82 413 555715334 555715667 4.250000e-99 372
31 TraesCS3D01G059400 chr7B 75.705 745 161 19 1247 1982 595531032 595531765 4.280000e-94 355
32 TraesCS3D01G059400 chr7B 93.814 97 6 0 1 97 130477901 130477805 2.810000e-31 147
33 TraesCS3D01G059400 chr1D 87.267 322 36 5 90 408 61942304 61942623 2.560000e-96 363
34 TraesCS3D01G059400 chr5A 86.136 339 38 8 82 414 632762974 632763309 1.190000e-94 357
35 TraesCS3D01G059400 chr4A 95.876 97 4 0 1 97 571991352 571991448 1.300000e-34 158
36 TraesCS3D01G059400 chr6D 94.845 97 5 0 1 97 433698360 433698456 6.030000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G059400 chr3D 26072324 26075813 3489 False 6445.0 6445 100.000000 1 3490 1 chr3D.!!$F1 3489
1 TraesCS3D01G059400 chr3D 26017177 26019998 2821 True 2815.0 2815 85.175000 697 3490 1 chr3D.!!$R1 2793
2 TraesCS3D01G059400 chr3D 25983383 25988131 4748 True 1401.0 2320 87.426333 881 3490 3 chr3D.!!$R2 2609
3 TraesCS3D01G059400 chr3B 43312585 43315385 2800 False 3945.0 3945 92.173000 681 3490 1 chr3B.!!$F1 2809
4 TraesCS3D01G059400 chr3B 43190156 43193119 2963 True 1499.0 2340 85.350000 701 3490 2 chr3B.!!$R1 2789
5 TraesCS3D01G059400 chr3B 74173115 74179096 5981 False 867.0 2037 85.585600 486 3439 5 chr3B.!!$F2 2953
6 TraesCS3D01G059400 chr3A 35752633 35755261 2628 True 2560.0 2560 84.610000 803 3442 1 chr3A.!!$R1 2639
7 TraesCS3D01G059400 chr3A 35768412 35770946 2534 False 1363.5 2169 85.654500 848 3442 2 chr3A.!!$F1 2594
8 TraesCS3D01G059400 chrUn 321664225 321665442 1217 True 902.0 902 81.066000 2304 3490 1 chrUn.!!$R1 1186
9 TraesCS3D01G059400 chr2D 17955017 17956402 1385 False 854.0 854 78.063000 1055 2440 1 chr2D.!!$F1 1385
10 TraesCS3D01G059400 chr5D 27260965 27261793 828 True 499.0 499 77.658000 1234 2066 1 chr5D.!!$R1 832
11 TraesCS3D01G059400 chr7B 595531032 595531765 733 False 355.0 355 75.705000 1247 1982 1 chr7B.!!$F2 735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
202 203 0.028505 CGATTCCGCCTGCAGATTTG 59.971 55.0 17.39 0.00 0.00 2.32 F
344 345 0.033405 TCGGGTCGAGAGGGAAATCT 60.033 55.0 0.00 0.00 0.00 2.40 F
409 410 0.039256 TCTTTTACGGGTCCGACGTG 60.039 55.0 16.90 2.71 45.20 4.49 F
411 412 0.103937 TTTTACGGGTCCGACGTGTT 59.896 50.0 16.90 0.00 45.20 3.32 F
416 417 0.039256 CGGGTCCGACGTGTTTAAGA 60.039 55.0 2.83 0.00 42.83 2.10 F
1168 4289 0.111253 ACTGCAAGGTTTCCCTCCAG 59.889 55.0 0.00 7.45 41.56 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1168 4289 0.402121 AGTTTCTTGAGTGGAGGCCC 59.598 55.000 0.00 0.00 0.00 5.80 R
1507 4649 0.816825 CCATGCGAGGACCCAATCAG 60.817 60.000 0.00 0.00 0.00 2.90 R
1671 4813 1.308069 GCGTTCCAGTGTGCCATGAT 61.308 55.000 0.00 0.00 0.00 2.45 R
1941 5089 2.540515 CCACTAAGATCGAATGCGTGT 58.459 47.619 0.00 0.00 38.98 4.49 R
2357 5505 5.003096 AGGAGACAAAATTTCCTCCATGT 57.997 39.130 24.21 11.93 45.73 3.21 R
3081 6400 1.134699 TGTGCTGCTAAGATTCCTCCG 60.135 52.381 0.00 0.00 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.128582 TCCATCTAAATTCACAAATACGAATGC 58.871 33.333 0.00 0.00 32.27 3.56
28 29 7.379529 CCATCTAAATTCACAAATACGAATGCC 59.620 37.037 0.00 0.00 32.27 4.40
29 30 6.482835 TCTAAATTCACAAATACGAATGCCG 58.517 36.000 0.00 0.00 45.44 5.69
30 31 2.535934 TTCACAAATACGAATGCCGC 57.464 45.000 0.00 0.00 43.32 6.53
31 32 1.443802 TCACAAATACGAATGCCGCA 58.556 45.000 0.00 0.00 43.32 5.69
32 33 2.013400 TCACAAATACGAATGCCGCAT 58.987 42.857 0.00 0.00 43.32 4.73
33 34 2.421775 TCACAAATACGAATGCCGCATT 59.578 40.909 18.56 18.56 43.32 3.56
34 35 3.623510 TCACAAATACGAATGCCGCATTA 59.376 39.130 18.52 4.05 43.32 1.90
35 36 4.095036 TCACAAATACGAATGCCGCATTAA 59.905 37.500 18.52 7.98 43.32 1.40
36 37 4.204168 CACAAATACGAATGCCGCATTAAC 59.796 41.667 18.52 6.65 43.32 2.01
37 38 3.619233 AATACGAATGCCGCATTAACC 57.381 42.857 18.52 5.95 43.32 2.85
38 39 2.025589 TACGAATGCCGCATTAACCA 57.974 45.000 18.52 2.26 43.32 3.67
39 40 1.169577 ACGAATGCCGCATTAACCAA 58.830 45.000 18.52 0.00 43.32 3.67
40 41 1.135517 ACGAATGCCGCATTAACCAAC 60.136 47.619 18.52 4.54 43.32 3.77
41 42 1.132262 CGAATGCCGCATTAACCAACT 59.868 47.619 18.52 0.00 33.90 3.16
42 43 2.353269 CGAATGCCGCATTAACCAACTA 59.647 45.455 18.52 0.00 33.90 2.24
43 44 3.003275 CGAATGCCGCATTAACCAACTAT 59.997 43.478 18.52 0.00 33.90 2.12
44 45 3.988379 ATGCCGCATTAACCAACTATG 57.012 42.857 0.00 0.00 0.00 2.23
45 46 1.403679 TGCCGCATTAACCAACTATGC 59.596 47.619 0.00 0.00 40.88 3.14
46 47 1.403679 GCCGCATTAACCAACTATGCA 59.596 47.619 0.00 0.00 43.66 3.96
47 48 2.034558 GCCGCATTAACCAACTATGCAT 59.965 45.455 3.79 3.79 43.66 3.96
48 49 3.252215 GCCGCATTAACCAACTATGCATA 59.748 43.478 6.20 6.20 43.66 3.14
49 50 4.783242 CCGCATTAACCAACTATGCATAC 58.217 43.478 1.16 0.00 43.66 2.39
50 51 4.320202 CCGCATTAACCAACTATGCATACC 60.320 45.833 1.16 0.00 43.66 2.73
51 52 4.610456 CGCATTAACCAACTATGCATACCG 60.610 45.833 1.16 0.00 43.66 4.02
52 53 4.783242 CATTAACCAACTATGCATACCGC 58.217 43.478 1.16 0.00 42.89 5.68
62 63 1.360192 GCATACCGCATCCCAAAGC 59.640 57.895 0.00 0.00 41.79 3.51
63 64 1.383456 GCATACCGCATCCCAAAGCA 61.383 55.000 0.00 0.00 41.79 3.91
64 65 0.381801 CATACCGCATCCCAAAGCAC 59.618 55.000 0.00 0.00 0.00 4.40
65 66 0.034574 ATACCGCATCCCAAAGCACA 60.035 50.000 0.00 0.00 0.00 4.57
66 67 0.250945 TACCGCATCCCAAAGCACAA 60.251 50.000 0.00 0.00 0.00 3.33
67 68 1.213537 CCGCATCCCAAAGCACAAG 59.786 57.895 0.00 0.00 0.00 3.16
68 69 1.444895 CGCATCCCAAAGCACAAGC 60.445 57.895 0.00 0.00 42.56 4.01
69 70 1.667151 GCATCCCAAAGCACAAGCA 59.333 52.632 0.00 0.00 45.49 3.91
70 71 0.668401 GCATCCCAAAGCACAAGCAC 60.668 55.000 0.00 0.00 45.49 4.40
71 72 0.675083 CATCCCAAAGCACAAGCACA 59.325 50.000 0.00 0.00 45.49 4.57
72 73 1.068895 CATCCCAAAGCACAAGCACAA 59.931 47.619 0.00 0.00 45.49 3.33
73 74 0.746063 TCCCAAAGCACAAGCACAAG 59.254 50.000 0.00 0.00 45.49 3.16
74 75 0.461135 CCCAAAGCACAAGCACAAGT 59.539 50.000 0.00 0.00 45.49 3.16
75 76 1.680735 CCCAAAGCACAAGCACAAGTA 59.319 47.619 0.00 0.00 45.49 2.24
76 77 2.543653 CCCAAAGCACAAGCACAAGTAC 60.544 50.000 0.00 0.00 45.49 2.73
77 78 2.358898 CCAAAGCACAAGCACAAGTACT 59.641 45.455 0.00 0.00 45.49 2.73
78 79 3.548818 CCAAAGCACAAGCACAAGTACTC 60.549 47.826 0.00 0.00 45.49 2.59
79 80 2.620251 AGCACAAGCACAAGTACTCA 57.380 45.000 0.00 0.00 45.49 3.41
80 81 2.213499 AGCACAAGCACAAGTACTCAC 58.787 47.619 0.00 0.00 45.49 3.51
81 82 1.264288 GCACAAGCACAAGTACTCACC 59.736 52.381 0.00 0.00 41.58 4.02
82 83 1.526887 CACAAGCACAAGTACTCACCG 59.473 52.381 0.00 0.00 0.00 4.94
83 84 1.148310 CAAGCACAAGTACTCACCGG 58.852 55.000 0.00 0.00 0.00 5.28
84 85 0.756903 AAGCACAAGTACTCACCGGT 59.243 50.000 0.00 0.00 0.00 5.28
85 86 0.033504 AGCACAAGTACTCACCGGTG 59.966 55.000 29.26 29.26 34.18 4.94
86 87 0.949105 GCACAAGTACTCACCGGTGG 60.949 60.000 33.40 24.99 32.59 4.61
87 88 0.949105 CACAAGTACTCACCGGTGGC 60.949 60.000 33.40 20.22 0.00 5.01
88 89 1.119574 ACAAGTACTCACCGGTGGCT 61.120 55.000 33.40 21.96 0.00 4.75
89 90 0.389948 CAAGTACTCACCGGTGGCTC 60.390 60.000 33.40 20.23 0.00 4.70
90 91 1.874345 AAGTACTCACCGGTGGCTCG 61.874 60.000 33.40 20.68 0.00 5.03
120 121 2.913060 GACTAGGGCGGCTCGGAT 60.913 66.667 9.56 0.00 0.00 4.18
121 122 2.913060 ACTAGGGCGGCTCGGATC 60.913 66.667 9.56 0.00 0.00 3.36
122 123 4.044484 CTAGGGCGGCTCGGATCG 62.044 72.222 9.56 0.00 0.00 3.69
129 130 4.726351 GGCTCGGATCGGCGGATC 62.726 72.222 22.44 22.44 46.85 3.36
146 147 3.396570 CCGGGGAGCCGGTAAAGT 61.397 66.667 1.90 0.00 46.95 2.66
147 148 2.125269 CGGGGAGCCGGTAAAGTG 60.125 66.667 1.90 0.00 0.00 3.16
148 149 2.271173 GGGGAGCCGGTAAAGTGG 59.729 66.667 1.90 0.00 0.00 4.00
155 156 3.453559 CCGGTAAAGTGGCTAGGTG 57.546 57.895 0.00 0.00 0.00 4.00
156 157 0.107848 CCGGTAAAGTGGCTAGGTGG 60.108 60.000 0.00 0.00 0.00 4.61
157 158 0.899720 CGGTAAAGTGGCTAGGTGGA 59.100 55.000 0.00 0.00 0.00 4.02
158 159 1.276989 CGGTAAAGTGGCTAGGTGGAA 59.723 52.381 0.00 0.00 0.00 3.53
159 160 2.708051 GGTAAAGTGGCTAGGTGGAAC 58.292 52.381 0.00 0.00 0.00 3.62
160 161 2.039348 GGTAAAGTGGCTAGGTGGAACA 59.961 50.000 0.00 0.00 39.98 3.18
161 162 2.568623 AAAGTGGCTAGGTGGAACAG 57.431 50.000 0.00 0.00 41.80 3.16
162 163 0.693049 AAGTGGCTAGGTGGAACAGG 59.307 55.000 0.00 0.00 41.80 4.00
163 164 1.201429 AGTGGCTAGGTGGAACAGGG 61.201 60.000 0.00 0.00 41.80 4.45
164 165 1.923395 TGGCTAGGTGGAACAGGGG 60.923 63.158 0.00 0.00 41.80 4.79
165 166 1.615424 GGCTAGGTGGAACAGGGGA 60.615 63.158 0.00 0.00 41.80 4.81
166 167 1.627297 GGCTAGGTGGAACAGGGGAG 61.627 65.000 0.00 0.00 41.80 4.30
167 168 1.627297 GCTAGGTGGAACAGGGGAGG 61.627 65.000 0.00 0.00 41.80 4.30
168 169 0.983378 CTAGGTGGAACAGGGGAGGG 60.983 65.000 0.00 0.00 41.80 4.30
169 170 4.048470 GGTGGAACAGGGGAGGGC 62.048 72.222 0.00 0.00 41.80 5.19
170 171 4.048470 GTGGAACAGGGGAGGGCC 62.048 72.222 0.00 0.00 41.80 5.80
200 201 4.131376 CGATTCCGCCTGCAGATT 57.869 55.556 17.39 0.00 0.00 2.40
201 202 2.397751 CGATTCCGCCTGCAGATTT 58.602 52.632 17.39 0.00 0.00 2.17
202 203 0.028505 CGATTCCGCCTGCAGATTTG 59.971 55.000 17.39 0.00 0.00 2.32
203 204 0.383231 GATTCCGCCTGCAGATTTGG 59.617 55.000 17.39 11.06 0.00 3.28
204 205 1.669999 ATTCCGCCTGCAGATTTGGC 61.670 55.000 17.39 9.88 42.94 4.52
205 206 3.830192 CCGCCTGCAGATTTGGCC 61.830 66.667 17.39 0.00 43.42 5.36
206 207 4.183686 CGCCTGCAGATTTGGCCG 62.184 66.667 17.39 3.42 43.42 6.13
207 208 3.830192 GCCTGCAGATTTGGCCGG 61.830 66.667 17.39 0.00 40.71 6.13
208 209 2.045045 CCTGCAGATTTGGCCGGA 60.045 61.111 17.39 0.00 37.80 5.14
209 210 1.678635 CCTGCAGATTTGGCCGGAA 60.679 57.895 17.39 0.00 37.80 4.30
210 211 1.039233 CCTGCAGATTTGGCCGGAAT 61.039 55.000 17.39 0.12 37.80 3.01
211 212 0.383231 CTGCAGATTTGGCCGGAATC 59.617 55.000 18.98 18.98 34.48 2.52
212 213 1.356624 GCAGATTTGGCCGGAATCG 59.643 57.895 19.93 16.57 38.29 3.34
213 214 1.356624 CAGATTTGGCCGGAATCGC 59.643 57.895 19.93 4.74 38.29 4.58
214 215 1.823899 AGATTTGGCCGGAATCGCC 60.824 57.895 19.93 0.00 38.29 5.54
235 236 3.766691 GGCTGACGGGCGGAACTA 61.767 66.667 0.00 0.00 0.00 2.24
236 237 2.263540 GCTGACGGGCGGAACTAA 59.736 61.111 0.00 0.00 0.00 2.24
237 238 1.153429 GCTGACGGGCGGAACTAAT 60.153 57.895 0.00 0.00 0.00 1.73
238 239 1.429148 GCTGACGGGCGGAACTAATG 61.429 60.000 0.00 0.00 0.00 1.90
239 240 0.810031 CTGACGGGCGGAACTAATGG 60.810 60.000 0.00 0.00 0.00 3.16
240 241 2.124860 ACGGGCGGAACTAATGGC 60.125 61.111 0.00 0.00 0.00 4.40
241 242 3.269347 CGGGCGGAACTAATGGCG 61.269 66.667 0.00 0.00 0.00 5.69
242 243 2.900337 GGGCGGAACTAATGGCGG 60.900 66.667 0.00 0.00 0.00 6.13
243 244 2.900337 GGCGGAACTAATGGCGGG 60.900 66.667 0.00 0.00 0.00 6.13
244 245 3.583086 GCGGAACTAATGGCGGGC 61.583 66.667 0.00 0.00 0.00 6.13
245 246 3.269347 CGGAACTAATGGCGGGCG 61.269 66.667 0.00 0.00 0.00 6.13
246 247 2.900337 GGAACTAATGGCGGGCGG 60.900 66.667 0.00 0.00 0.00 6.13
247 248 3.583086 GAACTAATGGCGGGCGGC 61.583 66.667 8.74 8.74 42.51 6.53
267 268 2.609610 CGGAAGGGGGTGAGGGAA 60.610 66.667 0.00 0.00 0.00 3.97
268 269 2.228480 CGGAAGGGGGTGAGGGAAA 61.228 63.158 0.00 0.00 0.00 3.13
269 270 1.691823 GGAAGGGGGTGAGGGAAAG 59.308 63.158 0.00 0.00 0.00 2.62
270 271 1.691823 GAAGGGGGTGAGGGAAAGG 59.308 63.158 0.00 0.00 0.00 3.11
271 272 1.857348 AAGGGGGTGAGGGAAAGGG 60.857 63.158 0.00 0.00 0.00 3.95
272 273 4.062032 GGGGGTGAGGGAAAGGGC 62.062 72.222 0.00 0.00 0.00 5.19
273 274 4.426313 GGGGTGAGGGAAAGGGCG 62.426 72.222 0.00 0.00 0.00 6.13
283 284 4.966787 AAAGGGCGCGGGCTGAAA 62.967 61.111 24.48 0.00 39.81 2.69
284 285 4.740822 AAGGGCGCGGGCTGAAAT 62.741 61.111 24.48 3.82 39.81 2.17
287 288 4.179579 GGCGCGGGCTGAAATGTC 62.180 66.667 24.48 0.53 39.81 3.06
288 289 4.179579 GCGCGGGCTGAAATGTCC 62.180 66.667 18.33 0.00 35.83 4.02
289 290 3.508840 CGCGGGCTGAAATGTCCC 61.509 66.667 0.00 0.00 36.68 4.46
290 291 2.044946 GCGGGCTGAAATGTCCCT 60.045 61.111 0.00 0.00 37.89 4.20
291 292 2.115291 GCGGGCTGAAATGTCCCTC 61.115 63.158 0.00 0.00 37.89 4.30
292 293 1.452108 CGGGCTGAAATGTCCCTCC 60.452 63.158 0.00 0.00 37.89 4.30
293 294 1.076705 GGGCTGAAATGTCCCTCCC 60.077 63.158 0.00 0.00 37.08 4.30
294 295 1.452108 GGCTGAAATGTCCCTCCCG 60.452 63.158 0.00 0.00 0.00 5.14
295 296 2.115291 GCTGAAATGTCCCTCCCGC 61.115 63.158 0.00 0.00 0.00 6.13
296 297 1.452108 CTGAAATGTCCCTCCCGCC 60.452 63.158 0.00 0.00 0.00 6.13
297 298 2.196997 CTGAAATGTCCCTCCCGCCA 62.197 60.000 0.00 0.00 0.00 5.69
298 299 1.001393 GAAATGTCCCTCCCGCCAA 60.001 57.895 0.00 0.00 0.00 4.52
299 300 1.304134 AAATGTCCCTCCCGCCAAC 60.304 57.895 0.00 0.00 0.00 3.77
300 301 2.781431 AAATGTCCCTCCCGCCAACC 62.781 60.000 0.00 0.00 0.00 3.77
306 307 3.431725 CTCCCGCCAACCGCTTTC 61.432 66.667 0.00 0.00 35.03 2.62
309 310 3.737172 CCGCCAACCGCTTTCCTG 61.737 66.667 0.00 0.00 35.03 3.86
310 311 3.737172 CGCCAACCGCTTTCCTGG 61.737 66.667 0.00 0.00 34.21 4.45
311 312 3.373565 GCCAACCGCTTTCCTGGG 61.374 66.667 0.00 0.00 0.00 4.45
312 313 2.434331 CCAACCGCTTTCCTGGGA 59.566 61.111 0.00 0.00 0.00 4.37
313 314 1.000896 CCAACCGCTTTCCTGGGAT 60.001 57.895 0.00 0.00 0.00 3.85
314 315 0.254747 CCAACCGCTTTCCTGGGATA 59.745 55.000 0.00 0.00 0.00 2.59
315 316 1.379527 CAACCGCTTTCCTGGGATAC 58.620 55.000 0.00 0.00 0.00 2.24
316 317 0.107848 AACCGCTTTCCTGGGATACG 60.108 55.000 0.00 0.00 37.60 3.06
317 318 1.227556 CCGCTTTCCTGGGATACGG 60.228 63.158 2.16 2.16 37.60 4.02
319 320 1.148498 GCTTTCCTGGGATACGGGG 59.852 63.158 0.00 0.00 46.36 5.73
320 321 1.148498 CTTTCCTGGGATACGGGGC 59.852 63.158 0.00 0.00 46.36 5.80
321 322 1.616930 TTTCCTGGGATACGGGGCA 60.617 57.895 0.00 0.00 46.36 5.36
322 323 1.917336 TTTCCTGGGATACGGGGCAC 61.917 60.000 0.00 0.00 46.36 5.01
336 337 4.477975 GCACCGTCGGGTCGAGAG 62.478 72.222 17.28 0.00 46.01 3.20
337 338 3.812019 CACCGTCGGGTCGAGAGG 61.812 72.222 17.28 9.23 46.01 3.69
339 340 4.790962 CCGTCGGGTCGAGAGGGA 62.791 72.222 2.34 0.00 44.02 4.20
340 341 2.749044 CGTCGGGTCGAGAGGGAA 60.749 66.667 0.00 0.00 36.23 3.97
341 342 2.338015 CGTCGGGTCGAGAGGGAAA 61.338 63.158 0.00 0.00 36.23 3.13
342 343 1.664321 CGTCGGGTCGAGAGGGAAAT 61.664 60.000 0.00 0.00 36.23 2.17
343 344 0.102663 GTCGGGTCGAGAGGGAAATC 59.897 60.000 0.00 0.00 36.23 2.17
344 345 0.033405 TCGGGTCGAGAGGGAAATCT 60.033 55.000 0.00 0.00 0.00 2.40
345 346 0.103208 CGGGTCGAGAGGGAAATCTG 59.897 60.000 0.00 0.00 0.00 2.90
346 347 0.179070 GGGTCGAGAGGGAAATCTGC 60.179 60.000 0.00 0.00 0.00 4.26
347 348 0.528684 GGTCGAGAGGGAAATCTGCG 60.529 60.000 0.00 0.00 0.00 5.18
348 349 0.173708 GTCGAGAGGGAAATCTGCGT 59.826 55.000 0.00 0.00 0.00 5.24
349 350 0.895530 TCGAGAGGGAAATCTGCGTT 59.104 50.000 0.00 0.00 0.00 4.84
350 351 1.275291 TCGAGAGGGAAATCTGCGTTT 59.725 47.619 0.00 0.00 0.00 3.60
351 352 2.076863 CGAGAGGGAAATCTGCGTTTT 58.923 47.619 0.00 0.00 0.00 2.43
352 353 2.094417 CGAGAGGGAAATCTGCGTTTTC 59.906 50.000 0.00 0.00 33.31 2.29
353 354 3.074412 GAGAGGGAAATCTGCGTTTTCA 58.926 45.455 11.46 0.00 35.29 2.69
354 355 2.814336 AGAGGGAAATCTGCGTTTTCAC 59.186 45.455 11.46 9.03 36.87 3.18
369 370 5.356882 GTTTTCACGAATTGGAGATGTGA 57.643 39.130 0.00 0.00 37.76 3.58
370 371 5.942872 GTTTTCACGAATTGGAGATGTGAT 58.057 37.500 0.00 0.00 39.13 3.06
371 372 6.381801 GTTTTCACGAATTGGAGATGTGATT 58.618 36.000 0.00 0.00 39.13 2.57
372 373 6.573664 TTTCACGAATTGGAGATGTGATTT 57.426 33.333 0.00 0.00 39.13 2.17
373 374 6.573664 TTCACGAATTGGAGATGTGATTTT 57.426 33.333 0.00 0.00 39.13 1.82
374 375 7.680442 TTCACGAATTGGAGATGTGATTTTA 57.320 32.000 0.00 0.00 39.13 1.52
375 376 7.072177 TCACGAATTGGAGATGTGATTTTAC 57.928 36.000 0.00 0.00 34.85 2.01
376 377 6.093495 TCACGAATTGGAGATGTGATTTTACC 59.907 38.462 0.00 0.00 34.85 2.85
377 378 5.064707 ACGAATTGGAGATGTGATTTTACCG 59.935 40.000 0.00 0.00 0.00 4.02
378 379 4.900635 ATTGGAGATGTGATTTTACCGC 57.099 40.909 0.00 0.00 0.00 5.68
379 380 2.276201 TGGAGATGTGATTTTACCGCG 58.724 47.619 0.00 0.00 0.00 6.46
380 381 2.277084 GGAGATGTGATTTTACCGCGT 58.723 47.619 4.92 0.00 0.00 6.01
381 382 2.284417 GGAGATGTGATTTTACCGCGTC 59.716 50.000 4.92 0.00 0.00 5.19
382 383 2.277084 AGATGTGATTTTACCGCGTCC 58.723 47.619 4.92 0.00 32.16 4.79
383 384 2.093658 AGATGTGATTTTACCGCGTCCT 60.094 45.455 4.92 0.00 32.16 3.85
384 385 2.172851 TGTGATTTTACCGCGTCCTT 57.827 45.000 4.92 0.00 0.00 3.36
385 386 2.070783 TGTGATTTTACCGCGTCCTTC 58.929 47.619 4.92 0.00 0.00 3.46
386 387 2.070783 GTGATTTTACCGCGTCCTTCA 58.929 47.619 4.92 0.00 0.00 3.02
387 388 2.481185 GTGATTTTACCGCGTCCTTCAA 59.519 45.455 4.92 0.00 0.00 2.69
388 389 3.058777 GTGATTTTACCGCGTCCTTCAAA 60.059 43.478 4.92 0.00 0.00 2.69
389 390 3.564644 TGATTTTACCGCGTCCTTCAAAA 59.435 39.130 4.92 2.55 0.00 2.44
390 391 4.216687 TGATTTTACCGCGTCCTTCAAAAT 59.783 37.500 4.92 7.23 0.00 1.82
391 392 3.817148 TTTACCGCGTCCTTCAAAATC 57.183 42.857 4.92 0.00 0.00 2.17
392 393 2.754946 TACCGCGTCCTTCAAAATCT 57.245 45.000 4.92 0.00 0.00 2.40
393 394 1.892209 ACCGCGTCCTTCAAAATCTT 58.108 45.000 4.92 0.00 0.00 2.40
394 395 2.227194 ACCGCGTCCTTCAAAATCTTT 58.773 42.857 4.92 0.00 0.00 2.52
395 396 2.621526 ACCGCGTCCTTCAAAATCTTTT 59.378 40.909 4.92 0.00 0.00 2.27
396 397 3.816523 ACCGCGTCCTTCAAAATCTTTTA 59.183 39.130 4.92 0.00 0.00 1.52
397 398 4.156182 CCGCGTCCTTCAAAATCTTTTAC 58.844 43.478 4.92 0.00 0.00 2.01
398 399 3.838550 CGCGTCCTTCAAAATCTTTTACG 59.161 43.478 0.00 0.00 33.01 3.18
399 400 4.156182 GCGTCCTTCAAAATCTTTTACGG 58.844 43.478 8.74 2.11 31.48 4.02
400 401 4.719040 CGTCCTTCAAAATCTTTTACGGG 58.281 43.478 0.00 0.00 0.00 5.28
401 402 4.214758 CGTCCTTCAAAATCTTTTACGGGT 59.785 41.667 0.00 0.00 0.00 5.28
402 403 5.616204 CGTCCTTCAAAATCTTTTACGGGTC 60.616 44.000 0.00 0.00 0.00 4.46
403 404 4.763279 TCCTTCAAAATCTTTTACGGGTCC 59.237 41.667 0.00 0.00 0.00 4.46
404 405 4.379082 CCTTCAAAATCTTTTACGGGTCCG 60.379 45.833 7.97 7.97 46.03 4.79
405 406 4.005487 TCAAAATCTTTTACGGGTCCGA 57.995 40.909 16.90 0.00 42.83 4.55
406 407 3.747529 TCAAAATCTTTTACGGGTCCGAC 59.252 43.478 16.90 0.00 42.83 4.79
407 408 2.000429 AATCTTTTACGGGTCCGACG 58.000 50.000 16.90 1.56 42.83 5.12
409 410 0.039256 TCTTTTACGGGTCCGACGTG 60.039 55.000 16.90 2.71 45.20 4.49
410 411 0.318955 CTTTTACGGGTCCGACGTGT 60.319 55.000 16.90 0.00 45.20 4.49
411 412 0.103937 TTTTACGGGTCCGACGTGTT 59.896 50.000 16.90 0.00 45.20 3.32
412 413 0.103937 TTTACGGGTCCGACGTGTTT 59.896 50.000 16.90 0.00 45.20 2.83
413 414 0.955178 TTACGGGTCCGACGTGTTTA 59.045 50.000 16.90 0.00 45.20 2.01
414 415 0.955178 TACGGGTCCGACGTGTTTAA 59.045 50.000 16.90 0.00 45.20 1.52
415 416 0.318955 ACGGGTCCGACGTGTTTAAG 60.319 55.000 16.90 0.00 43.78 1.85
416 417 0.039256 CGGGTCCGACGTGTTTAAGA 60.039 55.000 2.83 0.00 42.83 2.10
417 418 1.422388 GGGTCCGACGTGTTTAAGAC 58.578 55.000 0.00 0.00 0.00 3.01
418 419 1.269726 GGGTCCGACGTGTTTAAGACA 60.270 52.381 0.00 0.00 35.42 3.41
419 420 2.056577 GGTCCGACGTGTTTAAGACAG 58.943 52.381 0.00 0.00 39.39 3.51
420 421 2.544486 GGTCCGACGTGTTTAAGACAGT 60.544 50.000 0.00 0.00 39.39 3.55
421 422 3.304659 GGTCCGACGTGTTTAAGACAGTA 60.305 47.826 0.00 0.00 39.39 2.74
422 423 4.479619 GTCCGACGTGTTTAAGACAGTAT 58.520 43.478 0.00 0.00 39.39 2.12
423 424 4.919754 GTCCGACGTGTTTAAGACAGTATT 59.080 41.667 0.00 0.00 39.39 1.89
424 425 5.403466 GTCCGACGTGTTTAAGACAGTATTT 59.597 40.000 0.00 0.00 39.39 1.40
425 426 5.984926 TCCGACGTGTTTAAGACAGTATTTT 59.015 36.000 0.00 0.00 39.39 1.82
426 427 7.114811 GTCCGACGTGTTTAAGACAGTATTTTA 59.885 37.037 0.00 0.00 39.39 1.52
427 428 7.114811 TCCGACGTGTTTAAGACAGTATTTTAC 59.885 37.037 0.00 0.00 39.39 2.01
428 429 7.096106 CCGACGTGTTTAAGACAGTATTTTACA 60.096 37.037 0.00 0.00 39.39 2.41
429 430 8.430063 CGACGTGTTTAAGACAGTATTTTACAT 58.570 33.333 0.00 0.00 39.39 2.29
430 431 9.525007 GACGTGTTTAAGACAGTATTTTACATG 57.475 33.333 0.00 10.48 39.39 3.21
431 432 9.048446 ACGTGTTTAAGACAGTATTTTACATGT 57.952 29.630 2.69 2.69 39.39 3.21
432 433 9.313323 CGTGTTTAAGACAGTATTTTACATGTG 57.687 33.333 9.11 0.00 39.39 3.21
433 434 9.607285 GTGTTTAAGACAGTATTTTACATGTGG 57.393 33.333 9.11 0.00 39.39 4.17
434 435 9.562408 TGTTTAAGACAGTATTTTACATGTGGA 57.438 29.630 9.11 0.00 33.40 4.02
435 436 9.821662 GTTTAAGACAGTATTTTACATGTGGAC 57.178 33.333 9.11 0.00 0.00 4.02
436 437 8.556213 TTAAGACAGTATTTTACATGTGGACC 57.444 34.615 9.11 0.00 0.00 4.46
437 438 5.497474 AGACAGTATTTTACATGTGGACCC 58.503 41.667 9.11 0.00 0.00 4.46
438 439 4.258543 ACAGTATTTTACATGTGGACCCG 58.741 43.478 9.11 0.00 0.00 5.28
439 440 4.258543 CAGTATTTTACATGTGGACCCGT 58.741 43.478 9.11 0.00 0.00 5.28
440 441 5.046448 ACAGTATTTTACATGTGGACCCGTA 60.046 40.000 9.11 0.00 0.00 4.02
441 442 6.053005 CAGTATTTTACATGTGGACCCGTAT 58.947 40.000 9.11 0.00 0.00 3.06
442 443 6.540914 CAGTATTTTACATGTGGACCCGTATT 59.459 38.462 9.11 0.00 0.00 1.89
443 444 7.066525 CAGTATTTTACATGTGGACCCGTATTT 59.933 37.037 9.11 0.00 0.00 1.40
444 445 6.844097 ATTTTACATGTGGACCCGTATTTT 57.156 33.333 9.11 0.00 0.00 1.82
445 446 6.651975 TTTTACATGTGGACCCGTATTTTT 57.348 33.333 9.11 0.00 0.00 1.94
446 447 5.630661 TTACATGTGGACCCGTATTTTTG 57.369 39.130 9.11 0.00 0.00 2.44
447 448 2.230266 ACATGTGGACCCGTATTTTTGC 59.770 45.455 0.00 0.00 0.00 3.68
448 449 0.875728 TGTGGACCCGTATTTTTGCG 59.124 50.000 0.00 0.00 0.00 4.85
449 450 0.455464 GTGGACCCGTATTTTTGCGC 60.455 55.000 0.00 0.00 0.00 6.09
450 451 0.606944 TGGACCCGTATTTTTGCGCT 60.607 50.000 9.73 0.00 0.00 5.92
451 452 0.524414 GGACCCGTATTTTTGCGCTT 59.476 50.000 9.73 0.00 0.00 4.68
452 453 1.738908 GGACCCGTATTTTTGCGCTTA 59.261 47.619 9.73 0.00 0.00 3.09
453 454 2.356695 GGACCCGTATTTTTGCGCTTAT 59.643 45.455 9.73 0.00 0.00 1.73
454 455 3.181494 GGACCCGTATTTTTGCGCTTATT 60.181 43.478 9.73 0.00 0.00 1.40
455 456 4.417506 GACCCGTATTTTTGCGCTTATTT 58.582 39.130 9.73 0.00 0.00 1.40
456 457 4.811908 ACCCGTATTTTTGCGCTTATTTT 58.188 34.783 9.73 0.00 0.00 1.82
457 458 4.623595 ACCCGTATTTTTGCGCTTATTTTG 59.376 37.500 9.73 0.00 0.00 2.44
458 459 4.491763 CCCGTATTTTTGCGCTTATTTTGC 60.492 41.667 9.73 0.00 0.00 3.68
466 467 1.431845 GCTTATTTTGCGGGTCGGG 59.568 57.895 0.00 0.00 0.00 5.14
467 468 2.000215 GCTTATTTTGCGGGTCGGGG 62.000 60.000 0.00 0.00 0.00 5.73
468 469 1.378778 TTATTTTGCGGGTCGGGGG 60.379 57.895 0.00 0.00 0.00 5.40
482 483 2.122989 GGGGGTCCGCTGGAGATA 60.123 66.667 5.82 0.00 29.39 1.98
483 484 2.508751 GGGGGTCCGCTGGAGATAC 61.509 68.421 5.82 0.00 29.39 2.24
484 485 2.508751 GGGGTCCGCTGGAGATACC 61.509 68.421 0.00 0.00 39.54 2.73
497 498 1.279846 GAGATACCAACCGAACCCCAA 59.720 52.381 0.00 0.00 0.00 4.12
519 520 1.141881 CGGAGATCCCCTGTTCGTG 59.858 63.158 0.00 0.00 0.00 4.35
529 530 0.798776 CCTGTTCGTGCAGTTCATCC 59.201 55.000 0.00 0.00 34.84 3.51
595 596 4.547367 GCCCCGCGGTCAGCTAAT 62.547 66.667 26.12 0.00 45.59 1.73
596 597 2.280186 CCCCGCGGTCAGCTAATC 60.280 66.667 26.12 0.00 45.59 1.75
597 598 2.280186 CCCGCGGTCAGCTAATCC 60.280 66.667 26.12 0.00 45.59 3.01
598 599 2.499205 CCGCGGTCAGCTAATCCA 59.501 61.111 19.50 0.00 45.59 3.41
599 600 1.592669 CCGCGGTCAGCTAATCCAG 60.593 63.158 19.50 0.00 45.59 3.86
646 647 4.849310 TAATCCAGCGGCGGTGCC 62.849 66.667 31.67 3.55 46.75 5.01
822 862 1.646189 GCTGGGAATCAGAGTTCGTC 58.354 55.000 0.00 0.00 46.18 4.20
919 3953 3.432326 GGATTTGCTTCACCTACTCGGAT 60.432 47.826 0.00 0.00 36.31 4.18
967 4022 7.540400 CGATCTATAAGTATTGGCTGTTCTCTG 59.460 40.741 0.00 0.00 0.00 3.35
1044 4147 0.615544 AGAGGCTCTGCTCTGCTCTT 60.616 55.000 17.96 0.00 0.00 2.85
1168 4289 0.111253 ACTGCAAGGTTTCCCTCCAG 59.889 55.000 0.00 7.45 41.56 3.86
1169 4290 0.610232 CTGCAAGGTTTCCCTCCAGG 60.610 60.000 0.00 0.00 41.56 4.45
1353 4495 4.508128 CACTCCGCATACGCCCGT 62.508 66.667 0.00 0.00 38.22 5.28
1359 4501 1.007734 CGCATACGCCCGTCTATGT 60.008 57.895 0.00 0.00 33.11 2.29
1389 4531 1.001293 CAGTACAAGCAGAGCCAGACA 59.999 52.381 0.00 0.00 0.00 3.41
1405 4547 0.389948 GACACCTTGCCTGGTCTACG 60.390 60.000 0.00 0.00 38.45 3.51
1425 4567 2.545532 CGCCTCTGAATCTGATCCTGAC 60.546 54.545 0.00 0.00 0.00 3.51
1507 4649 0.969894 ACCTATCCGCAGCAGGTATC 59.030 55.000 0.13 0.00 0.00 2.24
1521 4663 2.036475 CAGGTATCTGATTGGGTCCTCG 59.964 54.545 0.00 0.00 43.49 4.63
1561 4703 1.066071 TCGACGAGAGGTCTGAGATGT 60.066 52.381 0.00 0.00 43.79 3.06
1630 4772 2.165167 CCACCATTGAGCATGTGAAGT 58.835 47.619 0.00 0.00 0.00 3.01
1671 4813 5.507985 CGGTGATGTCTGCAAGTATGAGATA 60.508 44.000 0.00 0.00 33.76 1.98
1969 5117 0.824109 CGATCTTAGTGGCCCTGTGA 59.176 55.000 0.00 0.67 0.00 3.58
2064 5212 1.801178 GGCAGTCTGCTACTTGTGTTC 59.199 52.381 23.68 0.00 44.28 3.18
2146 5294 7.968405 ACACTTCGGAAATTAAAATATGTGAGC 59.032 33.333 0.00 0.00 0.00 4.26
2219 5367 7.857389 CCATGTGTTATTTCTTGGTCATAATCG 59.143 37.037 0.00 0.00 0.00 3.34
2261 5409 4.581309 ATGAATTTCCTGCTCTCAAGGA 57.419 40.909 0.00 0.00 0.00 3.36
2312 5460 5.353394 TTTCTATGGACAGTGGGACATAC 57.647 43.478 0.00 0.00 44.52 2.39
2357 5505 7.122650 GGGAATTCTGAACTTGGATGATAACAA 59.877 37.037 5.23 0.00 0.00 2.83
2484 5632 2.037251 ACCGTGAAGTGAACTGCTACAT 59.963 45.455 0.00 0.00 0.00 2.29
2510 5666 5.804473 CACAATTAACACAAAGTGCAAGACA 59.196 36.000 0.00 0.00 36.98 3.41
2523 5691 4.621991 GTGCAAGACACTACTTGAGAGAA 58.378 43.478 11.75 0.00 46.85 2.87
2603 5771 4.613925 TCTGCTCAGTCTTTTGATGACT 57.386 40.909 0.00 0.00 44.62 3.41
2606 5774 5.478332 TCTGCTCAGTCTTTTGATGACTCTA 59.522 40.000 0.00 0.00 42.21 2.43
2607 5775 6.154192 TCTGCTCAGTCTTTTGATGACTCTAT 59.846 38.462 0.00 0.00 42.21 1.98
2876 6176 9.705290 AAATATTGTTCCCGCATAATATTTTCC 57.295 29.630 0.00 0.00 40.23 3.13
2877 6177 6.723298 ATTGTTCCCGCATAATATTTTCCA 57.277 33.333 0.00 0.00 0.00 3.53
2940 6256 5.937111 AGAACCATAAGCGTATAAACCCAT 58.063 37.500 0.00 0.00 0.00 4.00
3328 8875 2.213483 GACACACTGTTGTCGTCGG 58.787 57.895 0.00 0.00 36.79 4.79
3383 8930 1.412079 ATCTCTCCTCAATCGCAGCT 58.588 50.000 0.00 0.00 0.00 4.24
3423 8970 9.457110 CATCGATAATCTAAGCATAGGTATGAC 57.543 37.037 0.00 0.00 35.75 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.128582 GCATTCGTATTTGTGAATTTAGATGGA 58.871 33.333 0.00 0.00 32.68 3.41
4 5 7.132213 CGGCATTCGTATTTGTGAATTTAGAT 58.868 34.615 0.00 0.00 32.68 1.98
5 6 6.482835 CGGCATTCGTATTTGTGAATTTAGA 58.517 36.000 0.00 0.00 32.68 2.10
6 7 5.171337 GCGGCATTCGTATTTGTGAATTTAG 59.829 40.000 0.00 0.00 41.72 1.85
7 8 5.031578 GCGGCATTCGTATTTGTGAATTTA 58.968 37.500 0.00 0.00 41.72 1.40
8 9 3.857093 GCGGCATTCGTATTTGTGAATTT 59.143 39.130 0.00 0.00 41.72 1.82
9 10 3.119673 TGCGGCATTCGTATTTGTGAATT 60.120 39.130 0.00 0.00 41.72 2.17
10 11 2.421775 TGCGGCATTCGTATTTGTGAAT 59.578 40.909 0.00 0.00 41.72 2.57
11 12 1.807142 TGCGGCATTCGTATTTGTGAA 59.193 42.857 0.00 0.00 41.72 3.18
12 13 1.443802 TGCGGCATTCGTATTTGTGA 58.556 45.000 0.00 0.00 41.72 3.58
13 14 2.473530 ATGCGGCATTCGTATTTGTG 57.526 45.000 10.23 0.00 41.25 3.33
18 19 2.566913 TGGTTAATGCGGCATTCGTAT 58.433 42.857 29.70 10.29 45.77 3.06
19 20 2.025589 TGGTTAATGCGGCATTCGTA 57.974 45.000 29.70 14.77 41.72 3.43
20 21 1.135517 GTTGGTTAATGCGGCATTCGT 60.136 47.619 29.70 11.04 41.72 3.85
21 22 1.132262 AGTTGGTTAATGCGGCATTCG 59.868 47.619 29.70 0.00 42.76 3.34
22 23 2.939460 AGTTGGTTAATGCGGCATTC 57.061 45.000 29.70 17.15 35.54 2.67
23 24 3.490761 GCATAGTTGGTTAATGCGGCATT 60.491 43.478 28.91 28.91 36.94 3.56
24 25 2.034558 GCATAGTTGGTTAATGCGGCAT 59.965 45.455 10.23 10.23 36.94 4.40
25 26 1.403679 GCATAGTTGGTTAATGCGGCA 59.596 47.619 4.58 4.58 36.94 5.69
26 27 2.119671 GCATAGTTGGTTAATGCGGC 57.880 50.000 0.00 0.00 36.94 6.53
29 30 4.783242 CGGTATGCATAGTTGGTTAATGC 58.217 43.478 6.67 0.00 44.94 3.56
30 31 4.783242 GCGGTATGCATAGTTGGTTAATG 58.217 43.478 6.67 0.00 45.45 1.90
44 45 1.360192 GCTTTGGGATGCGGTATGC 59.640 57.895 0.00 0.00 46.70 3.14
45 46 0.381801 GTGCTTTGGGATGCGGTATG 59.618 55.000 0.00 0.00 0.00 2.39
46 47 0.034574 TGTGCTTTGGGATGCGGTAT 60.035 50.000 0.00 0.00 0.00 2.73
47 48 0.250945 TTGTGCTTTGGGATGCGGTA 60.251 50.000 0.00 0.00 0.00 4.02
48 49 1.526575 CTTGTGCTTTGGGATGCGGT 61.527 55.000 0.00 0.00 0.00 5.68
49 50 1.213537 CTTGTGCTTTGGGATGCGG 59.786 57.895 0.00 0.00 0.00 5.69
50 51 1.444895 GCTTGTGCTTTGGGATGCG 60.445 57.895 0.00 0.00 36.03 4.73
51 52 0.668401 GTGCTTGTGCTTTGGGATGC 60.668 55.000 0.00 0.00 40.48 3.91
52 53 0.675083 TGTGCTTGTGCTTTGGGATG 59.325 50.000 0.00 0.00 40.48 3.51
53 54 1.342174 CTTGTGCTTGTGCTTTGGGAT 59.658 47.619 0.00 0.00 40.48 3.85
54 55 0.746063 CTTGTGCTTGTGCTTTGGGA 59.254 50.000 0.00 0.00 40.48 4.37
55 56 0.461135 ACTTGTGCTTGTGCTTTGGG 59.539 50.000 0.00 0.00 40.48 4.12
56 57 2.358898 AGTACTTGTGCTTGTGCTTTGG 59.641 45.455 0.00 0.00 40.48 3.28
57 58 3.065233 TGAGTACTTGTGCTTGTGCTTTG 59.935 43.478 0.00 0.00 40.48 2.77
58 59 3.065371 GTGAGTACTTGTGCTTGTGCTTT 59.935 43.478 0.00 0.00 40.48 3.51
59 60 2.614057 GTGAGTACTTGTGCTTGTGCTT 59.386 45.455 0.00 0.00 40.48 3.91
60 61 2.213499 GTGAGTACTTGTGCTTGTGCT 58.787 47.619 0.00 0.00 40.48 4.40
61 62 1.264288 GGTGAGTACTTGTGCTTGTGC 59.736 52.381 0.00 0.00 40.20 4.57
62 63 1.526887 CGGTGAGTACTTGTGCTTGTG 59.473 52.381 0.00 0.00 0.00 3.33
63 64 1.540363 CCGGTGAGTACTTGTGCTTGT 60.540 52.381 0.00 0.00 0.00 3.16
64 65 1.148310 CCGGTGAGTACTTGTGCTTG 58.852 55.000 0.00 0.00 0.00 4.01
65 66 0.756903 ACCGGTGAGTACTTGTGCTT 59.243 50.000 6.12 0.00 0.00 3.91
66 67 0.033504 CACCGGTGAGTACTTGTGCT 59.966 55.000 31.31 0.00 0.00 4.40
67 68 0.949105 CCACCGGTGAGTACTTGTGC 60.949 60.000 36.07 0.00 31.45 4.57
68 69 0.949105 GCCACCGGTGAGTACTTGTG 60.949 60.000 36.07 16.25 0.00 3.33
69 70 1.119574 AGCCACCGGTGAGTACTTGT 61.120 55.000 36.07 7.59 0.00 3.16
70 71 0.389948 GAGCCACCGGTGAGTACTTG 60.390 60.000 36.07 17.77 0.00 3.16
71 72 1.874345 CGAGCCACCGGTGAGTACTT 61.874 60.000 36.07 13.53 0.00 2.24
72 73 2.341101 CGAGCCACCGGTGAGTACT 61.341 63.158 36.07 24.72 0.00 2.73
73 74 2.181021 CGAGCCACCGGTGAGTAC 59.819 66.667 36.07 20.59 0.00 2.73
74 75 3.066190 CCGAGCCACCGGTGAGTA 61.066 66.667 36.07 0.00 44.23 2.59
103 104 2.913060 ATCCGAGCCGCCCTAGTC 60.913 66.667 0.00 0.00 0.00 2.59
104 105 2.913060 GATCCGAGCCGCCCTAGT 60.913 66.667 0.00 0.00 0.00 2.57
105 106 4.044484 CGATCCGAGCCGCCCTAG 62.044 72.222 0.00 0.00 0.00 3.02
112 113 4.726351 GATCCGCCGATCCGAGCC 62.726 72.222 3.89 0.00 39.29 4.70
131 132 2.271173 CCACTTTACCGGCTCCCC 59.729 66.667 0.00 0.00 0.00 4.81
132 133 2.437895 GCCACTTTACCGGCTCCC 60.438 66.667 0.00 0.00 45.29 4.30
137 138 0.107848 CCACCTAGCCACTTTACCGG 60.108 60.000 0.00 0.00 0.00 5.28
138 139 0.899720 TCCACCTAGCCACTTTACCG 59.100 55.000 0.00 0.00 0.00 4.02
139 140 2.039348 TGTTCCACCTAGCCACTTTACC 59.961 50.000 0.00 0.00 0.00 2.85
140 141 3.335579 CTGTTCCACCTAGCCACTTTAC 58.664 50.000 0.00 0.00 0.00 2.01
141 142 2.304761 CCTGTTCCACCTAGCCACTTTA 59.695 50.000 0.00 0.00 0.00 1.85
142 143 1.073923 CCTGTTCCACCTAGCCACTTT 59.926 52.381 0.00 0.00 0.00 2.66
143 144 0.693049 CCTGTTCCACCTAGCCACTT 59.307 55.000 0.00 0.00 0.00 3.16
144 145 1.201429 CCCTGTTCCACCTAGCCACT 61.201 60.000 0.00 0.00 0.00 4.00
145 146 1.299976 CCCTGTTCCACCTAGCCAC 59.700 63.158 0.00 0.00 0.00 5.01
146 147 1.923395 CCCCTGTTCCACCTAGCCA 60.923 63.158 0.00 0.00 0.00 4.75
147 148 1.615424 TCCCCTGTTCCACCTAGCC 60.615 63.158 0.00 0.00 0.00 3.93
148 149 1.627297 CCTCCCCTGTTCCACCTAGC 61.627 65.000 0.00 0.00 0.00 3.42
149 150 0.983378 CCCTCCCCTGTTCCACCTAG 60.983 65.000 0.00 0.00 0.00 3.02
150 151 1.082206 CCCTCCCCTGTTCCACCTA 59.918 63.158 0.00 0.00 0.00 3.08
151 152 2.204151 CCCTCCCCTGTTCCACCT 60.204 66.667 0.00 0.00 0.00 4.00
152 153 4.048470 GCCCTCCCCTGTTCCACC 62.048 72.222 0.00 0.00 0.00 4.61
153 154 4.048470 GGCCCTCCCCTGTTCCAC 62.048 72.222 0.00 0.00 0.00 4.02
183 184 0.028505 CAAATCTGCAGGCGGAATCG 59.971 55.000 15.13 0.00 34.70 3.34
184 185 0.383231 CCAAATCTGCAGGCGGAATC 59.617 55.000 15.13 0.00 34.70 2.52
185 186 1.669999 GCCAAATCTGCAGGCGGAAT 61.670 55.000 15.13 0.00 38.86 3.01
186 187 2.342650 GCCAAATCTGCAGGCGGAA 61.343 57.895 15.13 0.00 38.86 4.30
187 188 2.751436 GCCAAATCTGCAGGCGGA 60.751 61.111 15.13 5.10 38.86 5.54
191 192 1.039233 ATTCCGGCCAAATCTGCAGG 61.039 55.000 15.13 0.00 44.25 4.85
192 193 0.383231 GATTCCGGCCAAATCTGCAG 59.617 55.000 16.89 7.63 31.73 4.41
193 194 1.375853 CGATTCCGGCCAAATCTGCA 61.376 55.000 20.07 0.00 32.15 4.41
194 195 1.356624 CGATTCCGGCCAAATCTGC 59.643 57.895 20.07 2.07 32.15 4.26
195 196 1.356624 GCGATTCCGGCCAAATCTG 59.643 57.895 20.07 15.59 36.06 2.90
196 197 3.827634 GCGATTCCGGCCAAATCT 58.172 55.556 20.07 0.00 36.06 2.40
218 219 2.588856 ATTAGTTCCGCCCGTCAGCC 62.589 60.000 0.00 0.00 0.00 4.85
219 220 1.153429 ATTAGTTCCGCCCGTCAGC 60.153 57.895 0.00 0.00 0.00 4.26
220 221 0.810031 CCATTAGTTCCGCCCGTCAG 60.810 60.000 0.00 0.00 0.00 3.51
221 222 1.219664 CCATTAGTTCCGCCCGTCA 59.780 57.895 0.00 0.00 0.00 4.35
222 223 2.178235 GCCATTAGTTCCGCCCGTC 61.178 63.158 0.00 0.00 0.00 4.79
223 224 2.124860 GCCATTAGTTCCGCCCGT 60.125 61.111 0.00 0.00 0.00 5.28
224 225 3.269347 CGCCATTAGTTCCGCCCG 61.269 66.667 0.00 0.00 0.00 6.13
225 226 2.900337 CCGCCATTAGTTCCGCCC 60.900 66.667 0.00 0.00 0.00 6.13
226 227 2.900337 CCCGCCATTAGTTCCGCC 60.900 66.667 0.00 0.00 0.00 6.13
227 228 3.583086 GCCCGCCATTAGTTCCGC 61.583 66.667 0.00 0.00 0.00 5.54
228 229 3.269347 CGCCCGCCATTAGTTCCG 61.269 66.667 0.00 0.00 0.00 4.30
229 230 2.900337 CCGCCCGCCATTAGTTCC 60.900 66.667 0.00 0.00 0.00 3.62
230 231 3.583086 GCCGCCCGCCATTAGTTC 61.583 66.667 0.00 0.00 0.00 3.01
250 251 2.198304 CTTTCCCTCACCCCCTTCCG 62.198 65.000 0.00 0.00 0.00 4.30
251 252 1.691823 CTTTCCCTCACCCCCTTCC 59.308 63.158 0.00 0.00 0.00 3.46
252 253 1.691823 CCTTTCCCTCACCCCCTTC 59.308 63.158 0.00 0.00 0.00 3.46
253 254 1.857348 CCCTTTCCCTCACCCCCTT 60.857 63.158 0.00 0.00 0.00 3.95
254 255 2.204306 CCCTTTCCCTCACCCCCT 60.204 66.667 0.00 0.00 0.00 4.79
255 256 4.062032 GCCCTTTCCCTCACCCCC 62.062 72.222 0.00 0.00 0.00 5.40
256 257 4.426313 CGCCCTTTCCCTCACCCC 62.426 72.222 0.00 0.00 0.00 4.95
266 267 4.966787 TTTCAGCCCGCGCCCTTT 62.967 61.111 0.00 0.00 34.57 3.11
267 268 4.740822 ATTTCAGCCCGCGCCCTT 62.741 61.111 0.00 0.00 34.57 3.95
270 271 4.179579 GACATTTCAGCCCGCGCC 62.180 66.667 0.00 0.00 34.57 6.53
271 272 4.179579 GGACATTTCAGCCCGCGC 62.180 66.667 0.00 0.00 0.00 6.86
272 273 3.508840 GGGACATTTCAGCCCGCG 61.509 66.667 0.00 0.00 31.06 6.46
273 274 2.044946 AGGGACATTTCAGCCCGC 60.045 61.111 0.00 0.00 46.68 6.13
274 275 1.452108 GGAGGGACATTTCAGCCCG 60.452 63.158 0.00 0.00 46.68 6.13
275 276 1.076705 GGGAGGGACATTTCAGCCC 60.077 63.158 0.00 0.00 42.37 5.19
276 277 1.452108 CGGGAGGGACATTTCAGCC 60.452 63.158 0.00 0.00 0.00 4.85
277 278 2.115291 GCGGGAGGGACATTTCAGC 61.115 63.158 0.00 0.00 0.00 4.26
278 279 1.452108 GGCGGGAGGGACATTTCAG 60.452 63.158 0.00 0.00 0.00 3.02
279 280 1.784301 TTGGCGGGAGGGACATTTCA 61.784 55.000 0.00 0.00 0.00 2.69
280 281 1.001393 TTGGCGGGAGGGACATTTC 60.001 57.895 0.00 0.00 0.00 2.17
281 282 1.304134 GTTGGCGGGAGGGACATTT 60.304 57.895 0.00 0.00 0.00 2.32
282 283 2.355115 GTTGGCGGGAGGGACATT 59.645 61.111 0.00 0.00 0.00 2.71
283 284 3.728373 GGTTGGCGGGAGGGACAT 61.728 66.667 0.00 0.00 0.00 3.06
294 295 3.373565 CCCAGGAAAGCGGTTGGC 61.374 66.667 0.00 0.00 44.05 4.52
295 296 0.254747 TATCCCAGGAAAGCGGTTGG 59.745 55.000 0.00 0.00 0.00 3.77
296 297 1.379527 GTATCCCAGGAAAGCGGTTG 58.620 55.000 0.00 0.00 0.00 3.77
297 298 0.107848 CGTATCCCAGGAAAGCGGTT 60.108 55.000 0.00 0.00 0.00 4.44
298 299 1.520666 CGTATCCCAGGAAAGCGGT 59.479 57.895 0.00 0.00 0.00 5.68
299 300 1.227556 CCGTATCCCAGGAAAGCGG 60.228 63.158 10.90 10.90 33.37 5.52
300 301 1.227556 CCCGTATCCCAGGAAAGCG 60.228 63.158 0.00 0.00 0.00 4.68
301 302 1.148498 CCCCGTATCCCAGGAAAGC 59.852 63.158 0.00 0.00 0.00 3.51
302 303 1.148498 GCCCCGTATCCCAGGAAAG 59.852 63.158 0.00 0.00 0.00 2.62
303 304 1.616930 TGCCCCGTATCCCAGGAAA 60.617 57.895 0.00 0.00 0.00 3.13
304 305 2.041430 TGCCCCGTATCCCAGGAA 59.959 61.111 0.00 0.00 0.00 3.36
305 306 2.766651 GTGCCCCGTATCCCAGGA 60.767 66.667 0.00 0.00 0.00 3.86
306 307 3.873812 GGTGCCCCGTATCCCAGG 61.874 72.222 0.00 0.00 0.00 4.45
319 320 4.477975 CTCTCGACCCGACGGTGC 62.478 72.222 13.94 3.02 44.88 5.01
320 321 3.812019 CCTCTCGACCCGACGGTG 61.812 72.222 13.94 6.98 44.88 4.94
322 323 4.790962 TCCCTCTCGACCCGACGG 62.791 72.222 6.99 6.99 0.00 4.79
323 324 1.664321 ATTTCCCTCTCGACCCGACG 61.664 60.000 0.00 0.00 0.00 5.12
324 325 0.102663 GATTTCCCTCTCGACCCGAC 59.897 60.000 0.00 0.00 0.00 4.79
325 326 0.033405 AGATTTCCCTCTCGACCCGA 60.033 55.000 0.00 0.00 0.00 5.14
326 327 0.103208 CAGATTTCCCTCTCGACCCG 59.897 60.000 0.00 0.00 0.00 5.28
327 328 0.179070 GCAGATTTCCCTCTCGACCC 60.179 60.000 0.00 0.00 0.00 4.46
328 329 0.528684 CGCAGATTTCCCTCTCGACC 60.529 60.000 0.00 0.00 0.00 4.79
329 330 0.173708 ACGCAGATTTCCCTCTCGAC 59.826 55.000 0.00 0.00 0.00 4.20
330 331 0.895530 AACGCAGATTTCCCTCTCGA 59.104 50.000 0.00 0.00 0.00 4.04
331 332 1.726853 AAACGCAGATTTCCCTCTCG 58.273 50.000 0.00 0.00 0.00 4.04
332 333 3.074412 TGAAAACGCAGATTTCCCTCTC 58.926 45.455 8.13 0.00 46.58 3.20
333 334 2.814336 GTGAAAACGCAGATTTCCCTCT 59.186 45.455 8.13 0.00 46.58 3.69
334 335 2.412847 CGTGAAAACGCAGATTTCCCTC 60.413 50.000 8.13 1.57 46.58 4.30
335 336 1.535462 CGTGAAAACGCAGATTTCCCT 59.465 47.619 8.13 0.00 46.58 4.20
336 337 1.533731 TCGTGAAAACGCAGATTTCCC 59.466 47.619 8.13 0.00 46.58 3.97
337 338 2.961522 TCGTGAAAACGCAGATTTCC 57.038 45.000 8.13 1.92 46.58 3.13
339 340 3.980775 CCAATTCGTGAAAACGCAGATTT 59.019 39.130 0.00 0.00 34.48 2.17
340 341 3.252215 TCCAATTCGTGAAAACGCAGATT 59.748 39.130 0.00 0.00 0.00 2.40
341 342 2.811431 TCCAATTCGTGAAAACGCAGAT 59.189 40.909 0.00 0.00 0.00 2.90
342 343 2.214347 TCCAATTCGTGAAAACGCAGA 58.786 42.857 0.00 0.00 0.00 4.26
343 344 2.223144 TCTCCAATTCGTGAAAACGCAG 59.777 45.455 0.00 0.00 0.00 5.18
344 345 2.214347 TCTCCAATTCGTGAAAACGCA 58.786 42.857 0.00 0.00 0.00 5.24
345 346 2.961522 TCTCCAATTCGTGAAAACGC 57.038 45.000 0.00 0.00 0.00 4.84
346 347 4.084066 TCACATCTCCAATTCGTGAAAACG 60.084 41.667 0.00 0.00 33.86 3.60
347 348 5.356882 TCACATCTCCAATTCGTGAAAAC 57.643 39.130 0.00 0.00 33.86 2.43
348 349 6.573664 AATCACATCTCCAATTCGTGAAAA 57.426 33.333 0.00 0.00 39.80 2.29
349 350 6.573664 AAATCACATCTCCAATTCGTGAAA 57.426 33.333 0.00 0.00 39.80 2.69
350 351 6.573664 AAAATCACATCTCCAATTCGTGAA 57.426 33.333 0.00 0.00 39.80 3.18
351 352 6.093495 GGTAAAATCACATCTCCAATTCGTGA 59.907 38.462 0.00 0.00 40.59 4.35
352 353 6.258160 GGTAAAATCACATCTCCAATTCGTG 58.742 40.000 0.00 0.00 0.00 4.35
353 354 5.064707 CGGTAAAATCACATCTCCAATTCGT 59.935 40.000 0.00 0.00 0.00 3.85
354 355 5.501715 CGGTAAAATCACATCTCCAATTCG 58.498 41.667 0.00 0.00 0.00 3.34
355 356 5.273944 GCGGTAAAATCACATCTCCAATTC 58.726 41.667 0.00 0.00 0.00 2.17
356 357 4.201910 CGCGGTAAAATCACATCTCCAATT 60.202 41.667 0.00 0.00 0.00 2.32
357 358 3.312421 CGCGGTAAAATCACATCTCCAAT 59.688 43.478 0.00 0.00 0.00 3.16
358 359 2.675844 CGCGGTAAAATCACATCTCCAA 59.324 45.455 0.00 0.00 0.00 3.53
359 360 2.276201 CGCGGTAAAATCACATCTCCA 58.724 47.619 0.00 0.00 0.00 3.86
360 361 2.277084 ACGCGGTAAAATCACATCTCC 58.723 47.619 12.47 0.00 0.00 3.71
361 362 2.284417 GGACGCGGTAAAATCACATCTC 59.716 50.000 12.47 0.00 0.00 2.75
362 363 2.093658 AGGACGCGGTAAAATCACATCT 60.094 45.455 12.47 0.00 0.00 2.90
363 364 2.277084 AGGACGCGGTAAAATCACATC 58.723 47.619 12.47 0.00 0.00 3.06
364 365 2.396590 AGGACGCGGTAAAATCACAT 57.603 45.000 12.47 0.00 0.00 3.21
365 366 2.070783 GAAGGACGCGGTAAAATCACA 58.929 47.619 12.47 0.00 0.00 3.58
366 367 2.070783 TGAAGGACGCGGTAAAATCAC 58.929 47.619 12.47 0.00 0.00 3.06
367 368 2.459060 TGAAGGACGCGGTAAAATCA 57.541 45.000 12.47 4.19 0.00 2.57
368 369 3.817148 TTTGAAGGACGCGGTAAAATC 57.183 42.857 12.47 0.00 0.00 2.17
369 370 4.457949 AGATTTTGAAGGACGCGGTAAAAT 59.542 37.500 12.47 12.90 32.33 1.82
370 371 3.816523 AGATTTTGAAGGACGCGGTAAAA 59.183 39.130 12.47 8.74 0.00 1.52
371 372 3.404899 AGATTTTGAAGGACGCGGTAAA 58.595 40.909 12.47 0.00 0.00 2.01
372 373 3.048337 AGATTTTGAAGGACGCGGTAA 57.952 42.857 12.47 0.00 0.00 2.85
373 374 2.754946 AGATTTTGAAGGACGCGGTA 57.245 45.000 12.47 0.00 0.00 4.02
374 375 1.892209 AAGATTTTGAAGGACGCGGT 58.108 45.000 12.47 0.00 0.00 5.68
375 376 2.989422 AAAGATTTTGAAGGACGCGG 57.011 45.000 12.47 0.00 0.00 6.46
376 377 3.838550 CGTAAAAGATTTTGAAGGACGCG 59.161 43.478 3.53 3.53 0.00 6.01
377 378 4.156182 CCGTAAAAGATTTTGAAGGACGC 58.844 43.478 0.82 0.00 30.21 5.19
378 379 4.214758 ACCCGTAAAAGATTTTGAAGGACG 59.785 41.667 0.82 2.79 30.94 4.79
379 380 5.335426 GGACCCGTAAAAGATTTTGAAGGAC 60.335 44.000 0.82 0.21 0.00 3.85
380 381 4.763279 GGACCCGTAAAAGATTTTGAAGGA 59.237 41.667 0.82 0.00 0.00 3.36
381 382 4.379082 CGGACCCGTAAAAGATTTTGAAGG 60.379 45.833 0.00 1.75 34.35 3.46
382 383 4.453136 TCGGACCCGTAAAAGATTTTGAAG 59.547 41.667 8.42 0.00 40.74 3.02
383 384 4.213906 GTCGGACCCGTAAAAGATTTTGAA 59.786 41.667 8.42 0.00 40.74 2.69
384 385 3.747529 GTCGGACCCGTAAAAGATTTTGA 59.252 43.478 8.42 0.00 40.74 2.69
385 386 3.423907 CGTCGGACCCGTAAAAGATTTTG 60.424 47.826 8.42 0.00 40.74 2.44
386 387 2.738314 CGTCGGACCCGTAAAAGATTTT 59.262 45.455 8.42 0.00 40.74 1.82
387 388 2.289010 ACGTCGGACCCGTAAAAGATTT 60.289 45.455 8.42 0.00 40.74 2.17
388 389 1.273327 ACGTCGGACCCGTAAAAGATT 59.727 47.619 8.42 0.00 40.74 2.40
389 390 0.890683 ACGTCGGACCCGTAAAAGAT 59.109 50.000 8.42 0.00 40.74 2.40
390 391 0.039256 CACGTCGGACCCGTAAAAGA 60.039 55.000 8.42 0.00 40.74 2.52
391 392 0.318955 ACACGTCGGACCCGTAAAAG 60.319 55.000 8.42 0.00 40.74 2.27
392 393 0.103937 AACACGTCGGACCCGTAAAA 59.896 50.000 8.42 0.00 40.74 1.52
393 394 0.103937 AAACACGTCGGACCCGTAAA 59.896 50.000 8.42 0.00 40.74 2.01
394 395 0.955178 TAAACACGTCGGACCCGTAA 59.045 50.000 8.42 0.00 40.74 3.18
395 396 0.955178 TTAAACACGTCGGACCCGTA 59.045 50.000 8.42 0.00 40.74 4.02
396 397 0.318955 CTTAAACACGTCGGACCCGT 60.319 55.000 8.42 0.00 40.74 5.28
397 398 0.039256 TCTTAAACACGTCGGACCCG 60.039 55.000 1.91 1.31 41.35 5.28
398 399 1.269726 TGTCTTAAACACGTCGGACCC 60.270 52.381 1.91 0.00 31.20 4.46
399 400 2.056577 CTGTCTTAAACACGTCGGACC 58.943 52.381 1.91 0.00 33.24 4.46
400 401 2.735823 ACTGTCTTAAACACGTCGGAC 58.264 47.619 0.00 0.00 33.24 4.79
401 402 4.771590 ATACTGTCTTAAACACGTCGGA 57.228 40.909 0.00 0.00 33.24 4.55
402 403 5.834239 AAATACTGTCTTAAACACGTCGG 57.166 39.130 0.00 0.00 33.24 4.79
403 404 7.776464 TGTAAAATACTGTCTTAAACACGTCG 58.224 34.615 0.00 0.00 33.24 5.12
404 405 9.525007 CATGTAAAATACTGTCTTAAACACGTC 57.475 33.333 0.00 0.00 33.24 4.34
405 406 9.048446 ACATGTAAAATACTGTCTTAAACACGT 57.952 29.630 0.00 0.00 33.24 4.49
406 407 9.313323 CACATGTAAAATACTGTCTTAAACACG 57.687 33.333 0.00 0.00 33.24 4.49
407 408 9.607285 CCACATGTAAAATACTGTCTTAAACAC 57.393 33.333 0.00 0.00 33.24 3.32
408 409 9.562408 TCCACATGTAAAATACTGTCTTAAACA 57.438 29.630 0.00 0.00 36.18 2.83
409 410 9.821662 GTCCACATGTAAAATACTGTCTTAAAC 57.178 33.333 0.00 0.00 0.00 2.01
410 411 9.005777 GGTCCACATGTAAAATACTGTCTTAAA 57.994 33.333 0.00 0.00 0.00 1.52
411 412 7.608761 GGGTCCACATGTAAAATACTGTCTTAA 59.391 37.037 0.00 0.00 0.00 1.85
412 413 7.107542 GGGTCCACATGTAAAATACTGTCTTA 58.892 38.462 0.00 0.00 0.00 2.10
413 414 5.944007 GGGTCCACATGTAAAATACTGTCTT 59.056 40.000 0.00 0.00 0.00 3.01
414 415 5.497474 GGGTCCACATGTAAAATACTGTCT 58.503 41.667 0.00 0.00 0.00 3.41
415 416 4.331717 CGGGTCCACATGTAAAATACTGTC 59.668 45.833 0.00 0.00 0.00 3.51
416 417 4.258543 CGGGTCCACATGTAAAATACTGT 58.741 43.478 0.00 0.00 0.00 3.55
417 418 4.258543 ACGGGTCCACATGTAAAATACTG 58.741 43.478 0.00 0.00 0.00 2.74
418 419 4.563140 ACGGGTCCACATGTAAAATACT 57.437 40.909 0.00 0.00 0.00 2.12
419 420 6.930667 AATACGGGTCCACATGTAAAATAC 57.069 37.500 0.00 0.00 0.00 1.89
420 421 7.941431 AAAATACGGGTCCACATGTAAAATA 57.059 32.000 0.00 0.00 0.00 1.40
421 422 6.844097 AAAATACGGGTCCACATGTAAAAT 57.156 33.333 0.00 0.00 0.00 1.82
422 423 6.448006 CAAAAATACGGGTCCACATGTAAAA 58.552 36.000 0.00 0.00 0.00 1.52
423 424 5.565045 GCAAAAATACGGGTCCACATGTAAA 60.565 40.000 0.00 0.00 0.00 2.01
424 425 4.082679 GCAAAAATACGGGTCCACATGTAA 60.083 41.667 0.00 0.00 0.00 2.41
425 426 3.440872 GCAAAAATACGGGTCCACATGTA 59.559 43.478 0.00 0.00 0.00 2.29
426 427 2.230266 GCAAAAATACGGGTCCACATGT 59.770 45.455 0.00 0.00 0.00 3.21
427 428 2.730715 CGCAAAAATACGGGTCCACATG 60.731 50.000 0.00 0.00 0.00 3.21
428 429 1.470890 CGCAAAAATACGGGTCCACAT 59.529 47.619 0.00 0.00 0.00 3.21
429 430 0.875728 CGCAAAAATACGGGTCCACA 59.124 50.000 0.00 0.00 0.00 4.17
430 431 0.455464 GCGCAAAAATACGGGTCCAC 60.455 55.000 0.30 0.00 0.00 4.02
431 432 0.606944 AGCGCAAAAATACGGGTCCA 60.607 50.000 11.47 0.00 0.00 4.02
432 433 0.524414 AAGCGCAAAAATACGGGTCC 59.476 50.000 11.47 0.00 0.00 4.46
433 434 3.685836 ATAAGCGCAAAAATACGGGTC 57.314 42.857 11.47 0.00 0.00 4.46
434 435 4.443913 AAATAAGCGCAAAAATACGGGT 57.556 36.364 11.47 0.00 0.00 5.28
435 436 4.491763 GCAAAATAAGCGCAAAAATACGGG 60.492 41.667 11.47 0.00 0.00 5.28
436 437 4.564281 GCAAAATAAGCGCAAAAATACGG 58.436 39.130 11.47 0.00 0.00 4.02
448 449 1.431845 CCCGACCCGCAAAATAAGC 59.568 57.895 0.00 0.00 0.00 3.09
449 450 1.381165 CCCCCGACCCGCAAAATAAG 61.381 60.000 0.00 0.00 0.00 1.73
450 451 1.378778 CCCCCGACCCGCAAAATAA 60.379 57.895 0.00 0.00 0.00 1.40
451 452 2.272797 CCCCCGACCCGCAAAATA 59.727 61.111 0.00 0.00 0.00 1.40
465 466 2.122989 TATCTCCAGCGGACCCCC 60.123 66.667 0.00 0.00 0.00 5.40
466 467 2.508751 GGTATCTCCAGCGGACCCC 61.509 68.421 0.00 0.00 35.97 4.95
467 468 1.760875 TGGTATCTCCAGCGGACCC 60.761 63.158 0.00 0.00 41.93 4.46
468 469 3.950232 TGGTATCTCCAGCGGACC 58.050 61.111 0.00 0.00 41.93 4.46
475 476 0.906775 GGGTTCGGTTGGTATCTCCA 59.093 55.000 0.00 0.00 45.60 3.86
476 477 0.179702 GGGGTTCGGTTGGTATCTCC 59.820 60.000 0.00 0.00 0.00 3.71
477 478 0.906775 TGGGGTTCGGTTGGTATCTC 59.093 55.000 0.00 0.00 0.00 2.75
478 479 1.003928 GTTGGGGTTCGGTTGGTATCT 59.996 52.381 0.00 0.00 0.00 1.98
479 480 1.456296 GTTGGGGTTCGGTTGGTATC 58.544 55.000 0.00 0.00 0.00 2.24
480 481 0.321830 CGTTGGGGTTCGGTTGGTAT 60.322 55.000 0.00 0.00 0.00 2.73
481 482 1.071128 CGTTGGGGTTCGGTTGGTA 59.929 57.895 0.00 0.00 0.00 3.25
482 483 2.203238 CGTTGGGGTTCGGTTGGT 60.203 61.111 0.00 0.00 0.00 3.67
483 484 2.111460 TCGTTGGGGTTCGGTTGG 59.889 61.111 0.00 0.00 0.00 3.77
484 485 2.600475 CGTCGTTGGGGTTCGGTTG 61.600 63.158 0.00 0.00 0.00 3.77
485 486 2.280321 CGTCGTTGGGGTTCGGTT 60.280 61.111 0.00 0.00 0.00 4.44
486 487 4.303993 CCGTCGTTGGGGTTCGGT 62.304 66.667 0.00 0.00 36.99 4.69
487 488 3.927163 CTCCGTCGTTGGGGTTCGG 62.927 68.421 0.00 0.00 42.12 4.30
488 489 2.221906 ATCTCCGTCGTTGGGGTTCG 62.222 60.000 0.00 0.00 0.00 3.95
489 490 0.459759 GATCTCCGTCGTTGGGGTTC 60.460 60.000 0.00 0.00 0.00 3.62
490 491 1.595357 GATCTCCGTCGTTGGGGTT 59.405 57.895 0.00 0.00 0.00 4.11
491 492 2.356780 GGATCTCCGTCGTTGGGGT 61.357 63.158 0.00 0.00 0.00 4.95
492 493 2.499685 GGATCTCCGTCGTTGGGG 59.500 66.667 0.00 0.00 0.00 4.96
497 498 1.305046 AACAGGGGATCTCCGTCGT 60.305 57.895 5.81 1.92 36.71 4.34
519 520 1.406614 CCCTCACTCTGGATGAACTGC 60.407 57.143 0.00 0.00 0.00 4.40
529 530 0.823460 GGCTCTTCTCCCTCACTCTG 59.177 60.000 0.00 0.00 0.00 3.35
578 579 4.547367 ATTAGCTGACCGCGGGGC 62.547 66.667 31.76 27.82 45.59 5.80
579 580 2.280186 GATTAGCTGACCGCGGGG 60.280 66.667 31.76 18.33 45.59 5.73
580 581 2.280186 GGATTAGCTGACCGCGGG 60.280 66.667 31.76 13.36 45.59 6.13
581 582 1.592669 CTGGATTAGCTGACCGCGG 60.593 63.158 26.86 26.86 45.59 6.46
582 583 4.018609 CTGGATTAGCTGACCGCG 57.981 61.111 0.00 0.00 45.59 6.46
615 616 4.547367 ATTAGCTGACCGCGGGGC 62.547 66.667 31.76 27.82 45.59 5.80
629 630 4.849310 GGCACCGCCGCTGGATTA 62.849 66.667 8.04 0.00 39.62 1.75
822 862 2.477845 CCGCTCTGCTTTGCTTCG 59.522 61.111 0.00 0.00 0.00 3.79
967 4022 2.688507 TGGAAAGTCGCAGTCTTGATC 58.311 47.619 0.00 0.00 35.81 2.92
1044 4147 2.292521 ACAGGTCTCCATGGCTTAGAGA 60.293 50.000 6.96 0.69 34.33 3.10
1129 4241 4.024218 CAGTTGAGGCAAAAGTCTGAAGAG 60.024 45.833 0.00 0.00 0.00 2.85
1168 4289 0.402121 AGTTTCTTGAGTGGAGGCCC 59.598 55.000 0.00 0.00 0.00 5.80
1169 4290 1.349357 AGAGTTTCTTGAGTGGAGGCC 59.651 52.381 0.00 0.00 0.00 5.19
1170 4291 2.421619 CAGAGTTTCTTGAGTGGAGGC 58.578 52.381 0.00 0.00 0.00 4.70
1171 4292 2.224378 TGCAGAGTTTCTTGAGTGGAGG 60.224 50.000 0.00 0.00 0.00 4.30
1172 4293 3.117491 TGCAGAGTTTCTTGAGTGGAG 57.883 47.619 0.00 0.00 0.00 3.86
1173 4294 3.558931 TTGCAGAGTTTCTTGAGTGGA 57.441 42.857 0.00 0.00 0.00 4.02
1174 4295 3.879295 TCTTTGCAGAGTTTCTTGAGTGG 59.121 43.478 3.90 0.00 0.00 4.00
1175 4296 5.237996 TCATCTTTGCAGAGTTTCTTGAGTG 59.762 40.000 3.90 0.00 30.36 3.51
1176 4297 5.371526 TCATCTTTGCAGAGTTTCTTGAGT 58.628 37.500 3.90 0.00 30.36 3.41
1351 4493 2.093658 ACTGCCCAAGGTTACATAGACG 60.094 50.000 0.00 0.00 0.00 4.18
1353 4495 4.098155 TGTACTGCCCAAGGTTACATAGA 58.902 43.478 0.00 0.00 0.00 1.98
1359 4501 1.422024 TGCTTGTACTGCCCAAGGTTA 59.578 47.619 8.51 0.00 39.72 2.85
1389 4531 2.663196 GCGTAGACCAGGCAAGGT 59.337 61.111 0.90 0.90 46.82 3.50
1405 4547 2.433604 TGTCAGGATCAGATTCAGAGGC 59.566 50.000 0.00 0.00 0.00 4.70
1425 4567 3.568538 GCTGTAGAGGCACAAAACATTG 58.431 45.455 0.00 0.00 0.00 2.82
1507 4649 0.816825 CCATGCGAGGACCCAATCAG 60.817 60.000 0.00 0.00 0.00 2.90
1521 4663 1.512694 GGTAACAAGCCAGCCATGC 59.487 57.895 0.00 0.00 0.00 4.06
1561 4703 4.536090 ACAGGTGATTGGATTCAGAAGGTA 59.464 41.667 0.00 0.00 0.00 3.08
1630 4772 5.862678 TCACCGTACTCATCAAATATGGA 57.137 39.130 0.00 0.00 0.00 3.41
1671 4813 1.308069 GCGTTCCAGTGTGCCATGAT 61.308 55.000 0.00 0.00 0.00 2.45
1941 5089 2.540515 CCACTAAGATCGAATGCGTGT 58.459 47.619 0.00 0.00 38.98 4.49
2219 5367 5.355071 TCATTAACACTGAGGCATTGTGATC 59.645 40.000 11.37 0.00 35.83 2.92
2261 5409 7.852971 TCGTCGGTAAAATAGGAATGATTTT 57.147 32.000 0.00 0.00 39.31 1.82
2312 5460 7.776933 ATTCCCATATCACGATGATTATTCG 57.223 36.000 5.94 0.00 38.26 3.34
2357 5505 5.003096 AGGAGACAAAATTTCCTCCATGT 57.997 39.130 24.21 11.93 45.73 3.21
2465 5613 3.740832 TGAATGTAGCAGTTCACTTCACG 59.259 43.478 0.00 0.00 29.93 4.35
2484 5632 6.529829 GTCTTGCACTTTGTGTTAATTGTGAA 59.470 34.615 0.00 0.00 35.75 3.18
2510 5666 5.364157 ACAAACAGGACTTCTCTCAAGTAGT 59.636 40.000 0.00 0.00 36.00 2.73
2523 5691 1.473258 TTTGCAGCACAAACAGGACT 58.527 45.000 0.00 0.00 43.35 3.85
2603 5771 8.306038 CCATGATTTTCTGAAAACACCAATAGA 58.694 33.333 17.06 0.39 31.52 1.98
2606 5774 6.930722 GTCCATGATTTTCTGAAAACACCAAT 59.069 34.615 17.06 1.16 31.52 3.16
2607 5775 6.127225 TGTCCATGATTTTCTGAAAACACCAA 60.127 34.615 17.06 3.16 31.52 3.67
2646 5843 4.022242 ACTGTCAGATTGCTGTAACTACGT 60.022 41.667 6.91 0.00 42.84 3.57
3081 6400 1.134699 TGTGCTGCTAAGATTCCTCCG 60.135 52.381 0.00 0.00 0.00 4.63
3195 8730 4.092529 CACTGCAACATAGTTCAGTAGCTG 59.907 45.833 0.00 0.00 37.66 4.24
3383 8930 2.659063 CGATGGAGTGGCTGTCCCA 61.659 63.158 3.62 0.00 42.79 4.37
3467 9028 1.878088 CTGCGCAAATGATAGCCAGAT 59.122 47.619 13.05 0.00 33.64 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.