Multiple sequence alignment - TraesCS3D01G058600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G058600 chr3D 100.000 2138 0 0 1 2138 25191467 25189330 0.000000e+00 3949.0
1 TraesCS3D01G058600 chr3D 81.569 803 78 29 613 1371 25161444 25160668 1.090000e-167 599.0
2 TraesCS3D01G058600 chr3D 80.357 448 45 21 809 1218 25151404 25150962 1.240000e-77 300.0
3 TraesCS3D01G058600 chr3D 80.838 334 35 12 1676 2009 25160503 25160199 3.550000e-58 235.0
4 TraesCS3D01G058600 chr3D 95.614 114 4 1 180 293 25191062 25190950 4.690000e-42 182.0
5 TraesCS3D01G058600 chr3D 95.614 114 4 1 406 518 25191288 25191175 4.690000e-42 182.0
6 TraesCS3D01G058600 chr3D 92.593 108 7 1 163 270 25190968 25190862 1.020000e-33 154.0
7 TraesCS3D01G058600 chr3D 92.593 108 7 1 500 606 25191305 25191198 1.020000e-33 154.0
8 TraesCS3D01G058600 chr3D 97.500 80 2 0 406 485 25190951 25190872 1.030000e-28 137.0
9 TraesCS3D01G058600 chr3D 97.500 80 2 0 517 596 25191062 25190983 1.030000e-28 137.0
10 TraesCS3D01G058600 chr3D 93.243 74 2 1 1292 1365 25150939 25150869 2.900000e-19 106.0
11 TraesCS3D01G058600 chr3D 96.078 51 2 0 1407 1457 25160597 25160547 1.360000e-12 84.2
12 TraesCS3D01G058600 chr3B 87.476 1046 66 27 500 1506 42715192 42714173 0.000000e+00 1146.0
13 TraesCS3D01G058600 chr3B 95.309 469 15 5 1672 2138 42714163 42713700 0.000000e+00 737.0
14 TraesCS3D01G058600 chr3B 81.784 807 74 28 611 1371 42707772 42706993 1.810000e-170 608.0
15 TraesCS3D01G058600 chr3B 85.135 370 22 17 865 1222 42701245 42700897 4.370000e-92 348.0
16 TraesCS3D01G058600 chr3B 83.554 377 28 23 865 1218 42690309 42689944 2.650000e-84 322.0
17 TraesCS3D01G058600 chr3B 94.611 167 9 0 1508 1674 198996 199162 2.100000e-65 259.0
18 TraesCS3D01G058600 chr3B 92.763 152 8 2 127 278 42715227 42715079 1.280000e-52 217.0
19 TraesCS3D01G058600 chr3B 93.846 130 7 1 286 414 50423447 50423318 6.020000e-46 195.0
20 TraesCS3D01G058600 chr3B 95.000 80 1 2 1289 1365 42689924 42689845 2.880000e-24 122.0
21 TraesCS3D01G058600 chr3A 87.415 1033 69 25 500 1510 34593795 34592802 0.000000e+00 1131.0
22 TraesCS3D01G058600 chr3A 96.837 411 11 2 1705 2114 34592741 34592332 0.000000e+00 686.0
23 TraesCS3D01G058600 chr3A 82.275 756 62 28 663 1371 34583641 34582911 2.360000e-164 588.0
24 TraesCS3D01G058600 chr3A 90.647 278 18 7 1 278 34593951 34593682 1.560000e-96 363.0
25 TraesCS3D01G058600 chr3A 90.909 99 6 3 406 503 34593778 34593682 1.720000e-26 130.0
26 TraesCS3D01G058600 chr3A 98.039 51 1 0 1407 1457 34582841 34582791 2.920000e-14 89.8
27 TraesCS3D01G058600 chr3A 95.918 49 2 0 1672 1720 34592804 34592756 1.760000e-11 80.5
28 TraesCS3D01G058600 chr1A 81.174 494 49 27 887 1371 548454412 548454870 7.260000e-95 357.0
29 TraesCS3D01G058600 chr1A 78.867 459 49 29 923 1371 548445483 548445903 1.260000e-67 267.0
30 TraesCS3D01G058600 chr1D 78.893 488 61 26 887 1371 453573568 453574016 2.080000e-75 292.0
31 TraesCS3D01G058600 chr1D 83.459 266 28 10 969 1228 453555168 453555423 1.280000e-57 233.0
32 TraesCS3D01G058600 chr1D 93.798 129 6 2 285 411 490308108 490308236 2.170000e-45 193.0
33 TraesCS3D01G058600 chr2A 95.238 168 8 0 1508 1675 717561506 717561339 1.260000e-67 267.0
34 TraesCS3D01G058600 chr2A 94.643 168 8 1 1506 1672 738732213 738732380 2.100000e-65 259.0
35 TraesCS3D01G058600 chr7B 94.611 167 9 0 1508 1674 444299184 444299350 2.100000e-65 259.0
36 TraesCS3D01G058600 chr7B 93.413 167 11 0 1508 1674 334452676 334452842 4.560000e-62 248.0
37 TraesCS3D01G058600 chr7B 93.798 129 6 2 288 414 310416333 310416205 2.170000e-45 193.0
38 TraesCS3D01G058600 chr5B 95.092 163 8 0 1510 1672 47109223 47109061 7.570000e-65 257.0
39 TraesCS3D01G058600 chr2B 95.092 163 8 0 1510 1672 677207658 677207496 7.570000e-65 257.0
40 TraesCS3D01G058600 chr6B 95.062 162 8 0 1510 1671 631194216 631194055 2.720000e-64 255.0
41 TraesCS3D01G058600 chr6B 95.935 123 3 2 290 410 448665733 448665611 4.650000e-47 198.0
42 TraesCS3D01G058600 chr4B 93.293 164 11 0 1509 1672 364047491 364047654 2.120000e-60 243.0
43 TraesCS3D01G058600 chr5D 98.291 117 1 1 292 407 439217629 439217745 1.000000e-48 204.0
44 TraesCS3D01G058600 chr5D 95.968 124 4 1 292 414 120890710 120890833 1.290000e-47 200.0
45 TraesCS3D01G058600 chr5D 95.200 125 4 2 292 414 420228167 420228291 1.670000e-46 196.0
46 TraesCS3D01G058600 chr4A 94.531 128 5 2 288 413 658949235 658949108 1.670000e-46 196.0
47 TraesCS3D01G058600 chr2D 93.130 131 6 3 280 408 263476469 263476598 2.800000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G058600 chr3D 25189330 25191467 2137 True 699.285714 3949 95.916286 1 2138 7 chr3D.!!$R3 2137
1 TraesCS3D01G058600 chr3D 25160199 25161444 1245 True 306.066667 599 86.161667 613 2009 3 chr3D.!!$R2 1396
2 TraesCS3D01G058600 chr3D 25150869 25151404 535 True 203.000000 300 86.800000 809 1365 2 chr3D.!!$R1 556
3 TraesCS3D01G058600 chr3B 42713700 42715227 1527 True 700.000000 1146 91.849333 127 2138 3 chr3B.!!$R5 2011
4 TraesCS3D01G058600 chr3B 42706993 42707772 779 True 608.000000 608 81.784000 611 1371 1 chr3B.!!$R2 760
5 TraesCS3D01G058600 chr3A 34592332 34593951 1619 True 478.100000 1131 92.345200 1 2114 5 chr3A.!!$R2 2113
6 TraesCS3D01G058600 chr3A 34582791 34583641 850 True 338.900000 588 90.157000 663 1457 2 chr3A.!!$R1 794

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
310 311 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.0 5.23 0.0 44.66 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1654 1829 0.032952 TAAGGGCGCGCTTGGTATAG 59.967 55.0 40.07 0.0 0.0 1.31 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 3.558418 GGCGTAGAAGTCAAGTTTCACAA 59.442 43.478 0.00 0.00 0.00 3.33
52 53 6.628856 CGTAGAAGTCAAGTTTCACAATGTTG 59.371 38.462 0.00 0.00 0.00 3.33
58 59 2.114616 AGTTTCACAATGTTGGGCCAA 58.885 42.857 16.66 16.66 0.00 4.52
59 60 2.158971 AGTTTCACAATGTTGGGCCAAC 60.159 45.455 36.67 36.67 43.78 3.77
60 61 1.786937 TTCACAATGTTGGGCCAACT 58.213 45.000 40.22 26.87 43.85 3.16
72 73 8.602472 ATGTTGGGCCAACTTTATATAGAAAA 57.398 30.769 40.22 21.76 43.85 2.29
73 74 8.423906 TGTTGGGCCAACTTTATATAGAAAAA 57.576 30.769 40.22 19.04 43.85 1.94
74 75 9.041354 TGTTGGGCCAACTTTATATAGAAAAAT 57.959 29.630 40.22 0.00 43.85 1.82
149 150 6.855667 TCATGATGAATCTAACCCCATTGAT 58.144 36.000 0.00 0.00 0.00 2.57
156 157 8.974060 TGAATCTAACCCCATTGATTTAGTAC 57.026 34.615 0.00 0.00 30.41 2.73
159 160 7.133133 TCTAACCCCATTGATTTAGTACTCC 57.867 40.000 0.00 0.00 0.00 3.85
278 279 9.080097 GGACAGAGAGTGTACCTATATTATGTT 57.920 37.037 0.00 0.00 40.56 2.71
280 281 9.642343 ACAGAGAGTGTACCTATATTATGTTCA 57.358 33.333 0.00 0.00 37.75 3.18
281 282 9.900710 CAGAGAGTGTACCTATATTATGTTCAC 57.099 37.037 0.00 0.00 32.49 3.18
282 283 9.642343 AGAGAGTGTACCTATATTATGTTCACA 57.358 33.333 0.00 0.00 34.10 3.58
283 284 9.900710 GAGAGTGTACCTATATTATGTTCACAG 57.099 37.037 0.00 0.00 34.10 3.66
284 285 9.422681 AGAGTGTACCTATATTATGTTCACAGT 57.577 33.333 0.00 0.00 34.10 3.55
305 306 1.180029 TTTTCTACTCCCTCCGTCCG 58.820 55.000 0.00 0.00 0.00 4.79
306 307 0.682209 TTTCTACTCCCTCCGTCCGG 60.682 60.000 0.00 0.00 0.00 5.14
307 308 1.565390 TTCTACTCCCTCCGTCCGGA 61.565 60.000 0.00 0.00 42.90 5.14
308 309 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
309 310 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
310 311 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
311 312 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
312 313 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
313 314 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
314 315 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
315 316 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
316 317 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
317 318 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
318 319 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
319 320 1.135315 CCGTCCGGAAATACTTGTCGA 60.135 52.381 5.23 0.00 37.50 4.20
320 321 2.598589 CGTCCGGAAATACTTGTCGAA 58.401 47.619 5.23 0.00 0.00 3.71
321 322 2.988493 CGTCCGGAAATACTTGTCGAAA 59.012 45.455 5.23 0.00 0.00 3.46
322 323 3.429543 CGTCCGGAAATACTTGTCGAAAA 59.570 43.478 5.23 0.00 0.00 2.29
323 324 4.084433 CGTCCGGAAATACTTGTCGAAAAA 60.084 41.667 5.23 0.00 0.00 1.94
380 381 6.929625 ACATCTAGATACATTCATTCCTCCG 58.070 40.000 4.54 0.00 0.00 4.63
381 382 6.721668 ACATCTAGATACATTCATTCCTCCGA 59.278 38.462 4.54 0.00 0.00 4.55
382 383 6.576662 TCTAGATACATTCATTCCTCCGAC 57.423 41.667 0.00 0.00 0.00 4.79
383 384 6.068670 TCTAGATACATTCATTCCTCCGACA 58.931 40.000 0.00 0.00 0.00 4.35
384 385 5.614324 AGATACATTCATTCCTCCGACAA 57.386 39.130 0.00 0.00 0.00 3.18
385 386 5.605534 AGATACATTCATTCCTCCGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
386 387 3.703001 ACATTCATTCCTCCGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
387 388 4.819105 ACATTCATTCCTCCGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
388 389 5.359194 ACATTCATTCCTCCGACAAGTAT 57.641 39.130 0.00 0.00 0.00 2.12
389 390 5.745227 ACATTCATTCCTCCGACAAGTATT 58.255 37.500 0.00 0.00 0.00 1.89
390 391 6.180472 ACATTCATTCCTCCGACAAGTATTT 58.820 36.000 0.00 0.00 0.00 1.40
391 392 6.316390 ACATTCATTCCTCCGACAAGTATTTC 59.684 38.462 0.00 0.00 0.00 2.17
392 393 4.766375 TCATTCCTCCGACAAGTATTTCC 58.234 43.478 0.00 0.00 0.00 3.13
393 394 2.953466 TCCTCCGACAAGTATTTCCG 57.047 50.000 0.00 0.00 0.00 4.30
394 395 1.479323 TCCTCCGACAAGTATTTCCGG 59.521 52.381 0.00 0.00 41.36 5.14
395 396 1.479323 CCTCCGACAAGTATTTCCGGA 59.521 52.381 0.00 0.00 45.74 5.14
396 397 2.537401 CTCCGACAAGTATTTCCGGAC 58.463 52.381 1.83 0.00 43.47 4.79
397 398 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
398 399 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
399 400 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
400 401 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
401 402 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
402 403 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
403 404 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
404 405 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
405 406 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
406 407 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
407 408 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
408 409 0.846015 TTCCGGACGGAGGGAGTATA 59.154 55.000 13.64 0.00 46.06 1.47
409 410 0.846015 TCCGGACGGAGGGAGTATAA 59.154 55.000 9.76 0.00 39.76 0.98
410 411 1.215173 TCCGGACGGAGGGAGTATAAA 59.785 52.381 9.76 0.00 39.76 1.40
411 412 2.158415 TCCGGACGGAGGGAGTATAAAT 60.158 50.000 9.76 0.00 39.76 1.40
412 413 2.631545 CCGGACGGAGGGAGTATAAATT 59.368 50.000 4.40 0.00 37.50 1.82
413 414 3.070590 CCGGACGGAGGGAGTATAAATTT 59.929 47.826 4.40 0.00 37.50 1.82
414 415 4.056050 CGGACGGAGGGAGTATAAATTTG 58.944 47.826 0.00 0.00 0.00 2.32
415 416 4.386711 GGACGGAGGGAGTATAAATTTGG 58.613 47.826 0.00 0.00 0.00 3.28
416 417 3.813724 GACGGAGGGAGTATAAATTTGGC 59.186 47.826 0.00 0.00 0.00 4.52
417 418 3.146847 CGGAGGGAGTATAAATTTGGCC 58.853 50.000 0.00 0.00 0.00 5.36
418 419 3.434453 CGGAGGGAGTATAAATTTGGCCA 60.434 47.826 0.00 0.00 0.00 5.36
419 420 4.542697 GGAGGGAGTATAAATTTGGCCAA 58.457 43.478 16.05 16.05 0.00 4.52
420 421 4.959839 GGAGGGAGTATAAATTTGGCCAAA 59.040 41.667 32.12 32.12 34.46 3.28
421 422 5.423931 GGAGGGAGTATAAATTTGGCCAAAA 59.576 40.000 33.43 18.78 33.56 2.44
422 423 6.099701 GGAGGGAGTATAAATTTGGCCAAAAT 59.900 38.462 33.43 23.81 40.32 1.82
423 424 6.888105 AGGGAGTATAAATTTGGCCAAAATG 58.112 36.000 33.43 0.00 38.52 2.32
424 425 6.671779 AGGGAGTATAAATTTGGCCAAAATGA 59.328 34.615 33.43 20.25 38.52 2.57
425 426 6.761242 GGGAGTATAAATTTGGCCAAAATGAC 59.239 38.462 33.43 23.94 38.52 3.06
426 427 6.475402 GGAGTATAAATTTGGCCAAAATGACG 59.525 38.462 33.43 0.00 38.52 4.35
427 428 7.164230 AGTATAAATTTGGCCAAAATGACGA 57.836 32.000 33.43 16.22 38.52 4.20
428 429 7.607250 AGTATAAATTTGGCCAAAATGACGAA 58.393 30.769 33.43 15.36 38.52 3.85
429 430 6.966435 ATAAATTTGGCCAAAATGACGAAG 57.034 33.333 33.43 0.00 38.52 3.79
430 431 4.335400 AATTTGGCCAAAATGACGAAGT 57.665 36.364 33.43 12.06 40.19 3.01
431 432 4.335400 ATTTGGCCAAAATGACGAAGTT 57.665 36.364 33.43 11.29 35.10 2.66
432 433 4.702831 ATTTGGCCAAAATGACGAAGTTT 58.297 34.783 33.43 10.75 35.10 2.66
433 434 5.122519 ATTTGGCCAAAATGACGAAGTTTT 58.877 33.333 33.43 10.54 35.10 2.43
434 435 5.588246 ATTTGGCCAAAATGACGAAGTTTTT 59.412 32.000 33.43 10.08 35.10 1.94
435 436 6.458070 ATTTGGCCAAAATGACGAAGTTTTTG 60.458 34.615 33.43 0.16 43.68 2.44
436 437 4.116238 GGCCAAAATGACGAAGTTTTTGA 58.884 39.130 0.00 0.00 45.62 2.69
437 438 4.026062 GGCCAAAATGACGAAGTTTTTGAC 60.026 41.667 0.00 7.05 45.62 3.18
438 439 4.803613 GCCAAAATGACGAAGTTTTTGACT 59.196 37.500 14.47 0.00 45.62 3.41
488 489 8.954950 ATGTCTATATTTTTGGACAGAGAGTG 57.045 34.615 0.00 0.00 41.11 3.51
489 490 7.907389 TGTCTATATTTTTGGACAGAGAGTGT 58.093 34.615 0.00 0.00 44.49 3.55
490 491 7.819415 TGTCTATATTTTTGGACAGAGAGTGTG 59.181 37.037 0.00 0.00 40.56 3.82
492 493 1.967319 TTTTGGACAGAGAGTGTGCC 58.033 50.000 0.00 0.00 46.70 5.01
493 494 1.131638 TTTGGACAGAGAGTGTGCCT 58.868 50.000 0.00 0.00 46.70 4.75
494 495 0.394192 TTGGACAGAGAGTGTGCCTG 59.606 55.000 0.00 0.00 46.70 4.85
495 496 0.760567 TGGACAGAGAGTGTGCCTGT 60.761 55.000 0.00 0.00 46.70 4.00
496 497 1.257743 GGACAGAGAGTGTGCCTGTA 58.742 55.000 0.00 0.00 41.56 2.74
497 498 1.827969 GGACAGAGAGTGTGCCTGTAT 59.172 52.381 0.00 0.00 41.56 2.29
498 499 2.234908 GGACAGAGAGTGTGCCTGTATT 59.765 50.000 0.00 0.00 41.56 1.89
499 500 3.447586 GGACAGAGAGTGTGCCTGTATTA 59.552 47.826 0.00 0.00 41.56 0.98
500 501 4.100189 GGACAGAGAGTGTGCCTGTATTAT 59.900 45.833 0.00 0.00 41.56 1.28
501 502 5.016051 ACAGAGAGTGTGCCTGTATTATG 57.984 43.478 0.00 0.00 39.15 1.90
502 503 4.467795 ACAGAGAGTGTGCCTGTATTATGT 59.532 41.667 0.00 0.00 39.15 2.29
503 504 5.046304 ACAGAGAGTGTGCCTGTATTATGTT 60.046 40.000 0.00 0.00 39.15 2.71
504 505 5.521735 CAGAGAGTGTGCCTGTATTATGTTC 59.478 44.000 0.00 0.00 0.00 3.18
505 506 5.187772 AGAGAGTGTGCCTGTATTATGTTCA 59.812 40.000 0.00 0.00 0.00 3.18
506 507 5.178797 AGAGTGTGCCTGTATTATGTTCAC 58.821 41.667 0.00 0.00 0.00 3.18
507 508 4.905429 AGTGTGCCTGTATTATGTTCACA 58.095 39.130 0.00 0.00 0.00 3.58
508 509 4.937620 AGTGTGCCTGTATTATGTTCACAG 59.062 41.667 0.00 0.00 39.50 3.66
509 510 4.695455 GTGTGCCTGTATTATGTTCACAGT 59.305 41.667 0.00 0.00 38.39 3.55
510 511 5.181245 GTGTGCCTGTATTATGTTCACAGTT 59.819 40.000 0.00 0.00 38.39 3.16
511 512 5.767665 TGTGCCTGTATTATGTTCACAGTTT 59.232 36.000 0.00 0.00 38.39 2.66
512 513 6.264292 TGTGCCTGTATTATGTTCACAGTTTT 59.736 34.615 0.00 0.00 38.39 2.43
513 514 7.145323 GTGCCTGTATTATGTTCACAGTTTTT 58.855 34.615 0.00 0.00 38.39 1.94
543 544 9.705290 ATAAATTTGGCTAAAATGACGAAGTTT 57.295 25.926 0.00 0.00 38.18 2.66
544 545 8.432110 AAATTTGGCTAAAATGACGAAGTTTT 57.568 26.923 0.00 0.00 38.18 2.43
545 546 8.432110 AATTTGGCTAAAATGACGAAGTTTTT 57.568 26.923 0.00 0.00 38.18 1.94
546 547 7.850501 ATTTGGCTAAAATGACGAAGTTTTTG 58.149 30.769 0.00 0.00 35.10 2.44
547 548 7.708752 ATTTGGCTAAAATGACGAAGTTTTTGA 59.291 29.630 0.00 0.00 35.10 2.69
591 592 8.438676 AGCACTATGTGTCTATATTTTTGGAC 57.561 34.615 0.00 0.00 35.75 4.02
592 593 8.046708 AGCACTATGTGTCTATATTTTTGGACA 58.953 33.333 0.00 0.00 35.75 4.02
593 594 8.338259 GCACTATGTGTCTATATTTTTGGACAG 58.662 37.037 0.00 0.00 39.01 3.51
594 595 9.599866 CACTATGTGTCTATATTTTTGGACAGA 57.400 33.333 0.00 0.00 39.01 3.41
595 596 9.823647 ACTATGTGTCTATATTTTTGGACAGAG 57.176 33.333 0.00 0.00 39.01 3.35
596 597 9.265901 CTATGTGTCTATATTTTTGGACAGAGG 57.734 37.037 0.00 0.00 39.01 3.69
597 598 6.414732 TGTGTCTATATTTTTGGACAGAGGG 58.585 40.000 0.00 0.00 39.01 4.30
598 599 5.823045 GTGTCTATATTTTTGGACAGAGGGG 59.177 44.000 0.00 0.00 39.01 4.79
599 600 5.104109 TGTCTATATTTTTGGACAGAGGGGG 60.104 44.000 0.00 0.00 34.38 5.40
600 601 5.043762 TCTATATTTTTGGACAGAGGGGGT 58.956 41.667 0.00 0.00 0.00 4.95
601 602 6.100714 GTCTATATTTTTGGACAGAGGGGGTA 59.899 42.308 0.00 0.00 0.00 3.69
602 603 5.806955 ATATTTTTGGACAGAGGGGGTAA 57.193 39.130 0.00 0.00 0.00 2.85
603 604 2.963599 TTTTGGACAGAGGGGGTAAC 57.036 50.000 0.00 0.00 0.00 2.50
604 605 2.127651 TTTGGACAGAGGGGGTAACT 57.872 50.000 0.00 0.00 0.00 2.24
605 606 3.278987 TTTGGACAGAGGGGGTAACTA 57.721 47.619 0.00 0.00 0.00 2.24
606 607 2.242882 TGGACAGAGGGGGTAACTAC 57.757 55.000 0.00 0.00 0.00 2.73
607 608 1.273438 TGGACAGAGGGGGTAACTACC 60.273 57.143 0.00 0.00 45.71 3.18
701 706 1.198759 ACTTCCCGGCTTTCTAGGCA 61.199 55.000 0.00 0.00 46.80 4.75
711 716 2.017049 CTTTCTAGGCAATTGTCCCCG 58.983 52.381 6.39 3.12 0.00 5.73
743 748 2.284798 GAATCCGCTGCACCTCGAGA 62.285 60.000 15.71 0.00 0.00 4.04
744 749 2.290122 AATCCGCTGCACCTCGAGAG 62.290 60.000 15.71 7.27 0.00 3.20
759 783 1.745653 CGAGAGAGTCTGGTGCATACA 59.254 52.381 0.00 0.00 0.00 2.29
799 833 2.719426 ACTCTTTACCCAACGTCTCG 57.281 50.000 0.00 0.00 0.00 4.04
807 841 0.886563 CCCAACGTCTCGTCCTAGTT 59.113 55.000 0.00 0.00 39.99 2.24
1045 1135 0.178992 CAAGCACAAGGGGTCAGGAA 60.179 55.000 0.00 0.00 0.00 3.36
1140 1237 2.106566 CTCTGCTACCATGACTGACCT 58.893 52.381 0.00 0.00 0.00 3.85
1268 1387 7.834681 TCATAGGGTAGTGTATGCTTAGATAGG 59.165 40.741 0.00 0.00 0.00 2.57
1271 1390 6.494146 AGGGTAGTGTATGCTTAGATAGGTTC 59.506 42.308 0.00 0.00 0.00 3.62
1276 1395 3.669251 ATGCTTAGATAGGTTCCGCTC 57.331 47.619 0.00 0.00 0.00 5.03
1351 1471 1.093972 CAACGGCAAGGATGTGCATA 58.906 50.000 0.00 0.00 46.81 3.14
1373 1528 9.494271 GCATATATCTGAGATGTTTGGTCTAAA 57.506 33.333 4.96 0.00 0.00 1.85
1378 1533 7.020827 TCTGAGATGTTTGGTCTAAAGGAAT 57.979 36.000 0.00 0.00 0.00 3.01
1387 1543 3.447586 TGGTCTAAAGGAATGTCTCGGAG 59.552 47.826 0.00 0.00 0.00 4.63
1391 1547 5.577554 GTCTAAAGGAATGTCTCGGAGAAAC 59.422 44.000 9.72 0.00 34.09 2.78
1400 1556 4.628074 TGTCTCGGAGAAACGAAAAAGAT 58.372 39.130 9.72 0.00 42.98 2.40
1401 1557 5.054477 TGTCTCGGAGAAACGAAAAAGATT 58.946 37.500 9.72 0.00 42.98 2.40
1402 1558 5.526111 TGTCTCGGAGAAACGAAAAAGATTT 59.474 36.000 9.72 0.00 42.98 2.17
1403 1559 6.037830 TGTCTCGGAGAAACGAAAAAGATTTT 59.962 34.615 9.72 0.00 42.98 1.82
1404 1560 6.910972 GTCTCGGAGAAACGAAAAAGATTTTT 59.089 34.615 9.72 3.03 42.98 1.94
1486 1653 5.221880 TGTTGAAGCATAACTGTGAATTGC 58.778 37.500 0.00 0.00 0.00 3.56
1510 1685 4.745649 AGCCTCTAACTGCTAACGTTTAG 58.254 43.478 5.91 5.74 35.69 1.85
1511 1686 3.864003 GCCTCTAACTGCTAACGTTTAGG 59.136 47.826 5.91 0.00 33.17 2.69
1512 1687 3.864003 CCTCTAACTGCTAACGTTTAGGC 59.136 47.826 5.91 9.76 0.00 3.93
1513 1688 3.853475 TCTAACTGCTAACGTTTAGGCC 58.147 45.455 5.91 0.00 0.00 5.19
1514 1689 1.817357 AACTGCTAACGTTTAGGCCC 58.183 50.000 5.91 0.00 0.00 5.80
1515 1690 0.981943 ACTGCTAACGTTTAGGCCCT 59.018 50.000 5.91 0.00 0.00 5.19
1516 1691 1.338769 ACTGCTAACGTTTAGGCCCTG 60.339 52.381 5.91 5.25 0.00 4.45
1517 1692 0.688487 TGCTAACGTTTAGGCCCTGT 59.312 50.000 5.91 0.00 0.00 4.00
1518 1693 1.072648 TGCTAACGTTTAGGCCCTGTT 59.927 47.619 5.91 0.00 0.00 3.16
1519 1694 2.156917 GCTAACGTTTAGGCCCTGTTT 58.843 47.619 5.91 0.00 0.00 2.83
1520 1695 2.095415 GCTAACGTTTAGGCCCTGTTTG 60.095 50.000 5.91 0.00 0.00 2.93
1521 1696 1.324383 AACGTTTAGGCCCTGTTTGG 58.676 50.000 0.00 0.00 0.00 3.28
1522 1697 0.475044 ACGTTTAGGCCCTGTTTGGA 59.525 50.000 0.00 0.00 38.35 3.53
1523 1698 1.074889 ACGTTTAGGCCCTGTTTGGAT 59.925 47.619 0.00 0.00 38.35 3.41
1524 1699 2.167662 CGTTTAGGCCCTGTTTGGATT 58.832 47.619 0.00 0.00 38.35 3.01
1525 1700 3.244981 ACGTTTAGGCCCTGTTTGGATTA 60.245 43.478 0.00 0.00 38.35 1.75
1526 1701 3.377172 CGTTTAGGCCCTGTTTGGATTAG 59.623 47.826 0.00 0.00 38.35 1.73
1527 1702 4.341487 GTTTAGGCCCTGTTTGGATTAGT 58.659 43.478 0.00 0.00 38.35 2.24
1528 1703 2.514458 AGGCCCTGTTTGGATTAGTG 57.486 50.000 0.00 0.00 38.35 2.74
1529 1704 1.710809 AGGCCCTGTTTGGATTAGTGT 59.289 47.619 0.00 0.00 38.35 3.55
1530 1705 2.110011 AGGCCCTGTTTGGATTAGTGTT 59.890 45.455 0.00 0.00 38.35 3.32
1531 1706 2.897326 GGCCCTGTTTGGATTAGTGTTT 59.103 45.455 0.00 0.00 38.35 2.83
1532 1707 3.323691 GGCCCTGTTTGGATTAGTGTTTT 59.676 43.478 0.00 0.00 38.35 2.43
1533 1708 4.556233 GCCCTGTTTGGATTAGTGTTTTC 58.444 43.478 0.00 0.00 38.35 2.29
1534 1709 4.280929 GCCCTGTTTGGATTAGTGTTTTCT 59.719 41.667 0.00 0.00 38.35 2.52
1535 1710 5.221441 GCCCTGTTTGGATTAGTGTTTTCTT 60.221 40.000 0.00 0.00 38.35 2.52
1536 1711 6.685368 GCCCTGTTTGGATTAGTGTTTTCTTT 60.685 38.462 0.00 0.00 38.35 2.52
1537 1712 7.470841 GCCCTGTTTGGATTAGTGTTTTCTTTA 60.471 37.037 0.00 0.00 38.35 1.85
1538 1713 8.082242 CCCTGTTTGGATTAGTGTTTTCTTTAG 58.918 37.037 0.00 0.00 38.35 1.85
1539 1714 8.846211 CCTGTTTGGATTAGTGTTTTCTTTAGA 58.154 33.333 0.00 0.00 38.35 2.10
1563 1738 8.932791 AGAATACACCTGTAAAAGAAATACACG 58.067 33.333 0.00 0.00 33.76 4.49
1564 1739 8.611654 AATACACCTGTAAAAGAAATACACGT 57.388 30.769 0.00 0.00 33.76 4.49
1565 1740 6.535274 ACACCTGTAAAAGAAATACACGTC 57.465 37.500 0.00 0.00 0.00 4.34
1566 1741 6.285990 ACACCTGTAAAAGAAATACACGTCT 58.714 36.000 0.00 0.00 0.00 4.18
1567 1742 6.423001 ACACCTGTAAAAGAAATACACGTCTC 59.577 38.462 0.00 0.00 0.00 3.36
1568 1743 5.930569 ACCTGTAAAAGAAATACACGTCTCC 59.069 40.000 0.00 0.00 0.00 3.71
1569 1744 5.929992 CCTGTAAAAGAAATACACGTCTCCA 59.070 40.000 0.00 0.00 0.00 3.86
1570 1745 6.128634 CCTGTAAAAGAAATACACGTCTCCAC 60.129 42.308 0.00 0.00 0.00 4.02
1571 1746 5.697633 TGTAAAAGAAATACACGTCTCCACC 59.302 40.000 0.00 0.00 0.00 4.61
1572 1747 2.649331 AGAAATACACGTCTCCACCG 57.351 50.000 0.00 0.00 0.00 4.94
1573 1748 1.203994 AGAAATACACGTCTCCACCGG 59.796 52.381 0.00 0.00 0.00 5.28
1574 1749 0.390735 AAATACACGTCTCCACCGGC 60.391 55.000 0.00 0.00 0.00 6.13
1575 1750 2.234913 AATACACGTCTCCACCGGCC 62.235 60.000 0.00 0.00 0.00 6.13
1587 1762 2.882132 CCGGCCGGTTTCATTTCC 59.118 61.111 36.64 0.00 0.00 3.13
1588 1763 1.974343 CCGGCCGGTTTCATTTCCA 60.974 57.895 36.64 0.00 0.00 3.53
1589 1764 1.506262 CGGCCGGTTTCATTTCCAG 59.494 57.895 20.10 0.00 0.00 3.86
1590 1765 1.241315 CGGCCGGTTTCATTTCCAGT 61.241 55.000 20.10 0.00 0.00 4.00
1591 1766 0.526211 GGCCGGTTTCATTTCCAGTC 59.474 55.000 1.90 0.00 0.00 3.51
1592 1767 0.168128 GCCGGTTTCATTTCCAGTCG 59.832 55.000 1.90 0.00 0.00 4.18
1593 1768 0.802494 CCGGTTTCATTTCCAGTCGG 59.198 55.000 0.00 0.00 0.00 4.79
1594 1769 1.609580 CCGGTTTCATTTCCAGTCGGA 60.610 52.381 0.00 0.00 40.60 4.55
1603 1778 2.842994 TCCAGTCGGAAAACCCTCA 58.157 52.632 0.00 0.00 38.83 3.86
1604 1779 1.358152 TCCAGTCGGAAAACCCTCAT 58.642 50.000 0.00 0.00 38.83 2.90
1605 1780 1.003118 TCCAGTCGGAAAACCCTCATG 59.997 52.381 0.00 0.00 38.83 3.07
1606 1781 0.804989 CAGTCGGAAAACCCTCATGC 59.195 55.000 0.00 0.00 0.00 4.06
1607 1782 0.322546 AGTCGGAAAACCCTCATGCC 60.323 55.000 0.00 0.00 0.00 4.40
1608 1783 1.001393 TCGGAAAACCCTCATGCCC 60.001 57.895 0.00 0.00 0.00 5.36
1609 1784 1.304052 CGGAAAACCCTCATGCCCA 60.304 57.895 0.00 0.00 0.00 5.36
1610 1785 1.315257 CGGAAAACCCTCATGCCCAG 61.315 60.000 0.00 0.00 0.00 4.45
1611 1786 0.251787 GGAAAACCCTCATGCCCAGT 60.252 55.000 0.00 0.00 0.00 4.00
1612 1787 1.005450 GGAAAACCCTCATGCCCAGTA 59.995 52.381 0.00 0.00 0.00 2.74
1613 1788 2.556559 GGAAAACCCTCATGCCCAGTAA 60.557 50.000 0.00 0.00 0.00 2.24
1614 1789 2.990740 AAACCCTCATGCCCAGTAAA 57.009 45.000 0.00 0.00 0.00 2.01
1615 1790 2.990740 AACCCTCATGCCCAGTAAAA 57.009 45.000 0.00 0.00 0.00 1.52
1616 1791 3.473113 AACCCTCATGCCCAGTAAAAT 57.527 42.857 0.00 0.00 0.00 1.82
1617 1792 4.601406 AACCCTCATGCCCAGTAAAATA 57.399 40.909 0.00 0.00 0.00 1.40
1618 1793 3.898482 ACCCTCATGCCCAGTAAAATAC 58.102 45.455 0.00 0.00 0.00 1.89
1619 1794 3.268334 ACCCTCATGCCCAGTAAAATACA 59.732 43.478 0.00 0.00 0.00 2.29
1620 1795 3.632145 CCCTCATGCCCAGTAAAATACAC 59.368 47.826 0.00 0.00 0.00 2.90
1621 1796 4.526970 CCTCATGCCCAGTAAAATACACT 58.473 43.478 0.00 0.00 0.00 3.55
1622 1797 4.949856 CCTCATGCCCAGTAAAATACACTT 59.050 41.667 0.00 0.00 0.00 3.16
1623 1798 5.163622 CCTCATGCCCAGTAAAATACACTTG 60.164 44.000 0.00 0.00 0.00 3.16
1624 1799 5.321102 TCATGCCCAGTAAAATACACTTGT 58.679 37.500 0.00 0.00 0.00 3.16
1625 1800 6.477253 TCATGCCCAGTAAAATACACTTGTA 58.523 36.000 0.00 0.00 34.67 2.41
1626 1801 6.943146 TCATGCCCAGTAAAATACACTTGTAA 59.057 34.615 0.00 0.00 33.76 2.41
1627 1802 7.448777 TCATGCCCAGTAAAATACACTTGTAAA 59.551 33.333 0.00 0.00 33.76 2.01
1628 1803 7.768807 TGCCCAGTAAAATACACTTGTAAAT 57.231 32.000 0.00 0.00 33.76 1.40
1629 1804 7.822658 TGCCCAGTAAAATACACTTGTAAATC 58.177 34.615 0.00 0.00 33.76 2.17
1630 1805 7.668052 TGCCCAGTAAAATACACTTGTAAATCT 59.332 33.333 0.00 0.00 33.76 2.40
1631 1806 8.520351 GCCCAGTAAAATACACTTGTAAATCTT 58.480 33.333 0.00 0.00 33.76 2.40
1640 1815 9.436957 AATACACTTGTAAATCTTACACCTCTG 57.563 33.333 0.00 0.00 33.76 3.35
1641 1816 6.827727 ACACTTGTAAATCTTACACCTCTGT 58.172 36.000 0.00 0.00 0.00 3.41
1642 1817 7.959175 ACACTTGTAAATCTTACACCTCTGTA 58.041 34.615 0.00 0.00 0.00 2.74
1643 1818 8.594550 ACACTTGTAAATCTTACACCTCTGTAT 58.405 33.333 0.00 0.00 32.70 2.29
1644 1819 9.436957 CACTTGTAAATCTTACACCTCTGTATT 57.563 33.333 0.00 0.00 32.70 1.89
1645 1820 9.436957 ACTTGTAAATCTTACACCTCTGTATTG 57.563 33.333 0.00 0.00 32.70 1.90
1646 1821 9.653287 CTTGTAAATCTTACACCTCTGTATTGA 57.347 33.333 0.00 0.00 32.70 2.57
1653 1828 8.997621 TCTTACACCTCTGTATTGAATTACAC 57.002 34.615 0.00 0.00 32.70 2.90
1654 1829 8.038944 TCTTACACCTCTGTATTGAATTACACC 58.961 37.037 0.00 0.00 32.70 4.16
1655 1830 6.374417 ACACCTCTGTATTGAATTACACCT 57.626 37.500 0.00 0.00 0.00 4.00
1656 1831 7.490657 ACACCTCTGTATTGAATTACACCTA 57.509 36.000 0.00 0.00 0.00 3.08
1657 1832 8.090788 ACACCTCTGTATTGAATTACACCTAT 57.909 34.615 0.00 0.00 0.00 2.57
1658 1833 9.209048 ACACCTCTGTATTGAATTACACCTATA 57.791 33.333 0.00 0.00 0.00 1.31
1659 1834 9.477484 CACCTCTGTATTGAATTACACCTATAC 57.523 37.037 0.00 0.00 0.00 1.47
1660 1835 8.648693 ACCTCTGTATTGAATTACACCTATACC 58.351 37.037 0.00 0.00 0.00 2.73
1661 1836 8.647796 CCTCTGTATTGAATTACACCTATACCA 58.352 37.037 0.00 0.00 0.00 3.25
1664 1839 8.671384 TGTATTGAATTACACCTATACCAAGC 57.329 34.615 0.00 0.00 0.00 4.01
1665 1840 6.861065 ATTGAATTACACCTATACCAAGCG 57.139 37.500 0.00 0.00 0.00 4.68
1666 1841 4.124238 TGAATTACACCTATACCAAGCGC 58.876 43.478 0.00 0.00 0.00 5.92
1667 1842 2.212869 TTACACCTATACCAAGCGCG 57.787 50.000 0.00 0.00 0.00 6.86
1668 1843 0.249155 TACACCTATACCAAGCGCGC 60.249 55.000 26.66 26.66 0.00 6.86
1669 1844 2.108362 ACCTATACCAAGCGCGCC 59.892 61.111 30.33 10.31 0.00 6.53
1670 1845 2.665185 CCTATACCAAGCGCGCCC 60.665 66.667 30.33 0.16 0.00 6.13
1671 1846 2.421739 CTATACCAAGCGCGCCCT 59.578 61.111 30.33 13.35 0.00 5.19
1672 1847 1.227556 CTATACCAAGCGCGCCCTT 60.228 57.895 30.33 14.51 0.00 3.95
1673 1848 0.032952 CTATACCAAGCGCGCCCTTA 59.967 55.000 30.33 14.59 0.00 2.69
1686 1861 2.548480 GCGCCCTTATATGTGTCCTTTC 59.452 50.000 0.00 0.00 0.00 2.62
1734 1939 4.461431 GGGTCAGTTAATGGGACGATTTTT 59.539 41.667 0.00 0.00 32.39 1.94
1737 1942 6.127730 GGTCAGTTAATGGGACGATTTTTCAT 60.128 38.462 0.00 0.00 32.39 2.57
1838 2045 7.009723 TGTTTTACCTCAAAATTTCAGCGAAAC 59.990 33.333 5.99 3.67 38.36 2.78
1871 2078 4.340950 TGAGTTCAACATTTCAGGGGAAAC 59.659 41.667 0.00 0.00 45.22 2.78
1882 2089 7.235399 ACATTTCAGGGGAAACTTCAAACATAT 59.765 33.333 0.00 0.00 45.22 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 8.602472 TTTTCTATATAAAGTTGGCCCAACAT 57.398 30.769 27.49 14.24 45.66 2.71
122 123 7.785985 TCAATGGGGTTAGATTCATCATGAAAT 59.214 33.333 3.63 0.00 40.12 2.17
141 142 7.645058 ACATTTGGAGTACTAAATCAATGGG 57.355 36.000 0.00 0.00 35.56 4.00
149 150 8.514330 AAACTGTGAACATTTGGAGTACTAAA 57.486 30.769 0.00 0.00 0.00 1.85
247 248 4.608948 AGGTACACTCTCTGTCCAAAAG 57.391 45.455 0.00 0.00 33.91 2.27
285 286 1.547372 CGGACGGAGGGAGTAGAAAAA 59.453 52.381 0.00 0.00 0.00 1.94
286 287 1.180029 CGGACGGAGGGAGTAGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
287 288 0.682209 CCGGACGGAGGGAGTAGAAA 60.682 60.000 4.40 0.00 37.50 2.52
288 289 1.077212 CCGGACGGAGGGAGTAGAA 60.077 63.158 4.40 0.00 37.50 2.10
289 290 1.565390 TTCCGGACGGAGGGAGTAGA 61.565 60.000 13.64 0.00 46.06 2.59
290 291 0.682209 TTTCCGGACGGAGGGAGTAG 60.682 60.000 13.64 0.00 46.06 2.57
291 292 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
292 293 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
293 294 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
294 295 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
295 296 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
296 297 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
297 298 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
298 299 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
299 300 1.135315 TCGACAAGTATTTCCGGACGG 60.135 52.381 1.83 3.96 0.00 4.79
300 301 2.267188 TCGACAAGTATTTCCGGACG 57.733 50.000 1.83 0.27 0.00 4.79
301 302 4.996062 TTTTCGACAAGTATTTCCGGAC 57.004 40.909 1.83 0.00 0.00 4.79
354 355 8.690884 CGGAGGAATGAATGTATCTAGATGTAT 58.309 37.037 15.79 6.61 0.00 2.29
355 356 7.888546 TCGGAGGAATGAATGTATCTAGATGTA 59.111 37.037 15.79 4.44 0.00 2.29
356 357 6.721668 TCGGAGGAATGAATGTATCTAGATGT 59.278 38.462 15.79 0.00 0.00 3.06
357 358 7.032580 GTCGGAGGAATGAATGTATCTAGATG 58.967 42.308 15.79 0.00 0.00 2.90
358 359 6.721668 TGTCGGAGGAATGAATGTATCTAGAT 59.278 38.462 10.73 10.73 0.00 1.98
359 360 6.068670 TGTCGGAGGAATGAATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
360 361 6.332735 TGTCGGAGGAATGAATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
361 362 6.323996 ACTTGTCGGAGGAATGAATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
362 363 5.129485 ACTTGTCGGAGGAATGAATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
363 364 5.360591 ACTTGTCGGAGGAATGAATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
364 365 5.359194 ACTTGTCGGAGGAATGAATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
365 366 4.819105 ACTTGTCGGAGGAATGAATGTA 57.181 40.909 0.00 0.00 0.00 2.29
366 367 3.703001 ACTTGTCGGAGGAATGAATGT 57.297 42.857 0.00 0.00 0.00 2.71
367 368 6.238484 GGAAATACTTGTCGGAGGAATGAATG 60.238 42.308 0.00 0.00 0.00 2.67
368 369 5.823045 GGAAATACTTGTCGGAGGAATGAAT 59.177 40.000 0.00 0.00 0.00 2.57
369 370 5.183228 GGAAATACTTGTCGGAGGAATGAA 58.817 41.667 0.00 0.00 0.00 2.57
370 371 4.679639 CGGAAATACTTGTCGGAGGAATGA 60.680 45.833 0.00 0.00 0.00 2.57
371 372 3.555956 CGGAAATACTTGTCGGAGGAATG 59.444 47.826 0.00 0.00 0.00 2.67
372 373 3.431766 CCGGAAATACTTGTCGGAGGAAT 60.432 47.826 0.00 0.00 42.94 3.01
373 374 2.093869 CCGGAAATACTTGTCGGAGGAA 60.094 50.000 0.00 0.00 42.94 3.36
374 375 1.479323 CCGGAAATACTTGTCGGAGGA 59.521 52.381 0.00 0.00 42.94 3.71
375 376 1.479323 TCCGGAAATACTTGTCGGAGG 59.521 52.381 0.00 0.00 43.84 4.30
376 377 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
377 378 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
378 379 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
379 380 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
380 381 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
381 382 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
382 383 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
383 384 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
384 385 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
385 386 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
386 387 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
387 388 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
388 389 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
389 390 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
390 391 0.846015 TTATACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
391 392 1.696063 TTTATACTCCCTCCGTCCGG 58.304 55.000 0.00 0.00 0.00 5.14
392 393 4.056050 CAAATTTATACTCCCTCCGTCCG 58.944 47.826 0.00 0.00 0.00 4.79
393 394 4.386711 CCAAATTTATACTCCCTCCGTCC 58.613 47.826 0.00 0.00 0.00 4.79
394 395 3.813724 GCCAAATTTATACTCCCTCCGTC 59.186 47.826 0.00 0.00 0.00 4.79
395 396 3.434596 GGCCAAATTTATACTCCCTCCGT 60.435 47.826 0.00 0.00 0.00 4.69
396 397 3.146847 GGCCAAATTTATACTCCCTCCG 58.853 50.000 0.00 0.00 0.00 4.63
397 398 4.178956 TGGCCAAATTTATACTCCCTCC 57.821 45.455 0.61 0.00 0.00 4.30
398 399 6.538945 TTTTGGCCAAATTTATACTCCCTC 57.461 37.500 30.78 0.00 0.00 4.30
399 400 6.671779 TCATTTTGGCCAAATTTATACTCCCT 59.328 34.615 30.78 0.00 32.24 4.20
400 401 6.761242 GTCATTTTGGCCAAATTTATACTCCC 59.239 38.462 30.78 7.80 32.24 4.30
401 402 6.475402 CGTCATTTTGGCCAAATTTATACTCC 59.525 38.462 30.78 11.20 32.24 3.85
402 403 7.254852 TCGTCATTTTGGCCAAATTTATACTC 58.745 34.615 30.78 14.38 32.24 2.59
403 404 7.164230 TCGTCATTTTGGCCAAATTTATACT 57.836 32.000 30.78 7.82 32.24 2.12
404 405 7.544217 ACTTCGTCATTTTGGCCAAATTTATAC 59.456 33.333 30.78 21.05 32.24 1.47
405 406 7.607250 ACTTCGTCATTTTGGCCAAATTTATA 58.393 30.769 30.78 16.53 32.24 0.98
406 407 6.463360 ACTTCGTCATTTTGGCCAAATTTAT 58.537 32.000 30.78 18.82 32.24 1.40
407 408 5.848406 ACTTCGTCATTTTGGCCAAATTTA 58.152 33.333 30.78 17.31 32.24 1.40
408 409 4.702831 ACTTCGTCATTTTGGCCAAATTT 58.297 34.783 30.78 18.63 32.24 1.82
409 410 4.335400 ACTTCGTCATTTTGGCCAAATT 57.665 36.364 30.78 23.92 32.24 1.82
410 411 4.335400 AACTTCGTCATTTTGGCCAAAT 57.665 36.364 30.78 17.79 35.24 2.32
411 412 3.810310 AACTTCGTCATTTTGGCCAAA 57.190 38.095 27.13 27.13 0.00 3.28
412 413 3.810310 AAACTTCGTCATTTTGGCCAA 57.190 38.095 16.05 16.05 0.00 4.52
413 414 3.810310 AAAACTTCGTCATTTTGGCCA 57.190 38.095 0.00 0.00 0.00 5.36
414 415 4.026062 GTCAAAAACTTCGTCATTTTGGCC 60.026 41.667 0.00 0.00 40.79 5.36
415 416 4.803613 AGTCAAAAACTTCGTCATTTTGGC 59.196 37.500 6.68 6.68 44.69 4.52
416 417 6.885735 AAGTCAAAAACTTCGTCATTTTGG 57.114 33.333 9.52 4.63 45.28 3.28
463 464 8.543774 ACACTCTCTGTCCAAAAATATAGACAT 58.456 33.333 0.00 0.00 38.49 3.06
464 465 7.819415 CACACTCTCTGTCCAAAAATATAGACA 59.181 37.037 0.00 0.00 37.65 3.41
465 466 7.201565 GCACACTCTCTGTCCAAAAATATAGAC 60.202 40.741 0.00 0.00 0.00 2.59
466 467 6.818644 GCACACTCTCTGTCCAAAAATATAGA 59.181 38.462 0.00 0.00 0.00 1.98
467 468 6.037610 GGCACACTCTCTGTCCAAAAATATAG 59.962 42.308 0.00 0.00 0.00 1.31
468 469 5.880332 GGCACACTCTCTGTCCAAAAATATA 59.120 40.000 0.00 0.00 0.00 0.86
469 470 4.702131 GGCACACTCTCTGTCCAAAAATAT 59.298 41.667 0.00 0.00 0.00 1.28
470 471 4.072131 GGCACACTCTCTGTCCAAAAATA 58.928 43.478 0.00 0.00 0.00 1.40
471 472 2.887152 GGCACACTCTCTGTCCAAAAAT 59.113 45.455 0.00 0.00 0.00 1.82
472 473 2.092429 AGGCACACTCTCTGTCCAAAAA 60.092 45.455 0.00 0.00 0.00 1.94
473 474 1.490490 AGGCACACTCTCTGTCCAAAA 59.510 47.619 0.00 0.00 0.00 2.44
474 475 1.131638 AGGCACACTCTCTGTCCAAA 58.868 50.000 0.00 0.00 0.00 3.28
475 476 0.394192 CAGGCACACTCTCTGTCCAA 59.606 55.000 0.00 0.00 0.00 3.53
476 477 0.760567 ACAGGCACACTCTCTGTCCA 60.761 55.000 0.00 0.00 37.16 4.02
477 478 1.257743 TACAGGCACACTCTCTGTCC 58.742 55.000 0.00 0.00 41.37 4.02
478 479 3.601443 AATACAGGCACACTCTCTGTC 57.399 47.619 0.00 0.00 41.37 3.51
479 480 4.467795 ACATAATACAGGCACACTCTCTGT 59.532 41.667 0.00 0.00 43.26 3.41
480 481 5.016051 ACATAATACAGGCACACTCTCTG 57.984 43.478 0.00 0.00 34.91 3.35
481 482 5.187772 TGAACATAATACAGGCACACTCTCT 59.812 40.000 0.00 0.00 0.00 3.10
482 483 5.292101 GTGAACATAATACAGGCACACTCTC 59.708 44.000 0.00 0.00 0.00 3.20
483 484 5.178797 GTGAACATAATACAGGCACACTCT 58.821 41.667 0.00 0.00 0.00 3.24
484 485 4.935205 TGTGAACATAATACAGGCACACTC 59.065 41.667 0.00 0.00 30.73 3.51
485 486 4.905429 TGTGAACATAATACAGGCACACT 58.095 39.130 0.00 0.00 30.73 3.55
486 487 4.695455 ACTGTGAACATAATACAGGCACAC 59.305 41.667 0.00 0.00 44.56 3.82
487 488 4.905429 ACTGTGAACATAATACAGGCACA 58.095 39.130 0.00 0.00 44.56 4.57
488 489 5.880054 AACTGTGAACATAATACAGGCAC 57.120 39.130 0.00 0.00 44.56 5.01
489 490 6.892658 AAAACTGTGAACATAATACAGGCA 57.107 33.333 0.00 0.00 44.56 4.75
517 518 9.705290 AAACTTCGTCATTTTAGCCAAATTTAT 57.295 25.926 0.00 0.00 32.24 1.40
518 519 9.535878 AAAACTTCGTCATTTTAGCCAAATTTA 57.464 25.926 0.00 0.00 32.24 1.40
519 520 8.432110 AAAACTTCGTCATTTTAGCCAAATTT 57.568 26.923 0.00 0.00 32.24 1.82
520 521 8.334632 CAAAAACTTCGTCATTTTAGCCAAATT 58.665 29.630 0.00 0.00 32.24 1.82
521 522 7.708752 TCAAAAACTTCGTCATTTTAGCCAAAT 59.291 29.630 0.00 0.00 35.24 2.32
522 523 7.009723 GTCAAAAACTTCGTCATTTTAGCCAAA 59.990 33.333 0.00 0.00 0.00 3.28
523 524 6.474102 GTCAAAAACTTCGTCATTTTAGCCAA 59.526 34.615 0.00 0.00 0.00 4.52
524 525 5.974751 GTCAAAAACTTCGTCATTTTAGCCA 59.025 36.000 0.00 0.00 0.00 4.75
525 526 6.206498 AGTCAAAAACTTCGTCATTTTAGCC 58.794 36.000 0.00 0.00 33.03 3.93
526 527 7.679659 AAGTCAAAAACTTCGTCATTTTAGC 57.320 32.000 0.00 0.00 45.28 3.09
565 566 8.893727 GTCCAAAAATATAGACACATAGTGCTT 58.106 33.333 0.00 0.00 36.98 3.91
566 567 8.046708 TGTCCAAAAATATAGACACATAGTGCT 58.953 33.333 0.00 0.00 36.98 4.40
567 568 8.208718 TGTCCAAAAATATAGACACATAGTGC 57.791 34.615 0.00 0.00 36.98 4.40
568 569 9.599866 TCTGTCCAAAAATATAGACACATAGTG 57.400 33.333 0.00 0.00 39.75 2.74
569 570 9.823647 CTCTGTCCAAAAATATAGACACATAGT 57.176 33.333 0.00 0.00 35.50 2.12
570 571 9.265901 CCTCTGTCCAAAAATATAGACACATAG 57.734 37.037 0.00 0.00 35.50 2.23
571 572 8.210946 CCCTCTGTCCAAAAATATAGACACATA 58.789 37.037 0.00 0.00 35.50 2.29
572 573 7.056635 CCCTCTGTCCAAAAATATAGACACAT 58.943 38.462 0.00 0.00 35.50 3.21
573 574 6.414732 CCCTCTGTCCAAAAATATAGACACA 58.585 40.000 0.00 0.00 35.50 3.72
574 575 5.823045 CCCCTCTGTCCAAAAATATAGACAC 59.177 44.000 0.00 0.00 35.50 3.67
575 576 5.104109 CCCCCTCTGTCCAAAAATATAGACA 60.104 44.000 0.00 0.00 37.65 3.41
576 577 5.104067 ACCCCCTCTGTCCAAAAATATAGAC 60.104 44.000 0.00 0.00 0.00 2.59
577 578 5.043762 ACCCCCTCTGTCCAAAAATATAGA 58.956 41.667 0.00 0.00 0.00 1.98
578 579 5.388599 ACCCCCTCTGTCCAAAAATATAG 57.611 43.478 0.00 0.00 0.00 1.31
579 580 6.449041 AGTTACCCCCTCTGTCCAAAAATATA 59.551 38.462 0.00 0.00 0.00 0.86
580 581 5.255443 AGTTACCCCCTCTGTCCAAAAATAT 59.745 40.000 0.00 0.00 0.00 1.28
581 582 4.604490 AGTTACCCCCTCTGTCCAAAAATA 59.396 41.667 0.00 0.00 0.00 1.40
582 583 3.401342 AGTTACCCCCTCTGTCCAAAAAT 59.599 43.478 0.00 0.00 0.00 1.82
583 584 2.787035 AGTTACCCCCTCTGTCCAAAAA 59.213 45.455 0.00 0.00 0.00 1.94
584 585 2.424793 AGTTACCCCCTCTGTCCAAAA 58.575 47.619 0.00 0.00 0.00 2.44
585 586 2.127651 AGTTACCCCCTCTGTCCAAA 57.872 50.000 0.00 0.00 0.00 3.28
586 587 2.543635 GTAGTTACCCCCTCTGTCCAA 58.456 52.381 0.00 0.00 0.00 3.53
587 588 1.273438 GGTAGTTACCCCCTCTGTCCA 60.273 57.143 0.00 0.00 40.53 4.02
588 589 1.273438 TGGTAGTTACCCCCTCTGTCC 60.273 57.143 5.90 0.00 45.87 4.02
589 590 2.242882 TGGTAGTTACCCCCTCTGTC 57.757 55.000 5.90 0.00 45.87 3.51
590 591 2.225805 ACATGGTAGTTACCCCCTCTGT 60.226 50.000 5.90 0.40 45.87 3.41
591 592 2.170607 CACATGGTAGTTACCCCCTCTG 59.829 54.545 5.90 0.00 45.87 3.35
592 593 2.225805 ACACATGGTAGTTACCCCCTCT 60.226 50.000 5.90 0.00 45.87 3.69
593 594 2.093128 CACACATGGTAGTTACCCCCTC 60.093 54.545 5.90 0.00 45.87 4.30
594 595 1.913419 CACACATGGTAGTTACCCCCT 59.087 52.381 5.90 0.00 45.87 4.79
595 596 1.064979 CCACACATGGTAGTTACCCCC 60.065 57.143 5.90 0.00 45.87 5.40
596 597 2.413310 CCACACATGGTAGTTACCCC 57.587 55.000 5.90 0.00 45.87 4.95
607 608 6.609237 AGTCATCGAAATAATCCACACATG 57.391 37.500 0.00 0.00 0.00 3.21
608 609 7.475015 CAAAGTCATCGAAATAATCCACACAT 58.525 34.615 0.00 0.00 0.00 3.21
609 610 6.622679 GCAAAGTCATCGAAATAATCCACACA 60.623 38.462 0.00 0.00 0.00 3.72
646 651 2.257207 TCAAGACCAGGGACAAGTAGG 58.743 52.381 0.00 0.00 0.00 3.18
701 706 1.131303 TGACACTCCCGGGGACAATT 61.131 55.000 23.50 0.00 0.00 2.32
711 716 3.688553 GGATTCCGATGACACTCCC 57.311 57.895 0.00 0.00 0.00 4.30
743 748 3.557898 CCTTGTTGTATGCACCAGACTCT 60.558 47.826 0.00 0.00 0.00 3.24
744 749 2.744202 CCTTGTTGTATGCACCAGACTC 59.256 50.000 0.00 0.00 0.00 3.36
751 756 1.185315 ATGCCCCTTGTTGTATGCAC 58.815 50.000 0.00 0.00 0.00 4.57
799 833 3.686726 CCTCACATCTTTGCAACTAGGAC 59.313 47.826 0.00 0.00 0.00 3.85
807 841 3.692593 CACATGATCCTCACATCTTTGCA 59.307 43.478 0.00 0.00 0.00 4.08
897 953 2.636893 GCTACTGGATGGATGGATCTGT 59.363 50.000 0.00 0.00 0.00 3.41
1045 1135 0.567182 ATCCTGCTGATCCCTCCTCT 59.433 55.000 0.00 0.00 0.00 3.69
1140 1237 4.062293 CGAAGAACAGGACACCAATGTAA 58.938 43.478 0.00 0.00 39.95 2.41
1276 1395 4.274950 ACTTCAACATCCAAACTAACCGTG 59.725 41.667 0.00 0.00 0.00 4.94
1351 1471 8.324191 TCCTTTAGACCAAACATCTCAGATAT 57.676 34.615 0.00 0.00 0.00 1.63
1373 1528 2.168496 TCGTTTCTCCGAGACATTCCT 58.832 47.619 0.00 0.00 32.18 3.36
1378 1533 4.049546 TCTTTTTCGTTTCTCCGAGACA 57.950 40.909 0.00 0.00 38.23 3.41
1403 1559 6.832520 TGCTCAGCACTTCCATAATAAAAA 57.167 33.333 0.00 0.00 31.71 1.94
1404 1560 6.832520 TTGCTCAGCACTTCCATAATAAAA 57.167 33.333 0.00 0.00 38.71 1.52
1405 1561 6.832520 TTTGCTCAGCACTTCCATAATAAA 57.167 33.333 0.00 0.00 38.71 1.40
1486 1653 1.132643 ACGTTAGCAGTTAGAGGCTCG 59.867 52.381 9.22 0.00 41.41 5.03
1510 1685 2.215942 ACACTAATCCAAACAGGGCC 57.784 50.000 0.00 0.00 38.24 5.80
1511 1686 4.280929 AGAAAACACTAATCCAAACAGGGC 59.719 41.667 0.00 0.00 38.24 5.19
1512 1687 6.405278 AAGAAAACACTAATCCAAACAGGG 57.595 37.500 0.00 0.00 38.24 4.45
1513 1688 8.846211 TCTAAAGAAAACACTAATCCAAACAGG 58.154 33.333 0.00 0.00 39.47 4.00
1523 1698 9.841295 ACAGGTGTATTCTAAAGAAAACACTAA 57.159 29.630 0.00 0.00 37.61 2.24
1525 1700 9.841295 TTACAGGTGTATTCTAAAGAAAACACT 57.159 29.630 0.00 0.00 37.61 3.55
1537 1712 8.932791 CGTGTATTTCTTTTACAGGTGTATTCT 58.067 33.333 0.00 0.00 33.14 2.40
1538 1713 8.715088 ACGTGTATTTCTTTTACAGGTGTATTC 58.285 33.333 8.00 0.00 43.31 1.75
1539 1714 8.611654 ACGTGTATTTCTTTTACAGGTGTATT 57.388 30.769 8.00 0.00 43.31 1.89
1540 1715 8.092687 AGACGTGTATTTCTTTTACAGGTGTAT 58.907 33.333 12.29 0.00 44.31 2.29
1541 1716 7.436118 AGACGTGTATTTCTTTTACAGGTGTA 58.564 34.615 12.29 0.00 44.31 2.90
1542 1717 6.285990 AGACGTGTATTTCTTTTACAGGTGT 58.714 36.000 12.29 7.07 44.31 4.16
1543 1718 6.128634 GGAGACGTGTATTTCTTTTACAGGTG 60.129 42.308 12.29 0.00 44.31 4.00
1544 1719 5.930569 GGAGACGTGTATTTCTTTTACAGGT 59.069 40.000 0.00 8.42 45.93 4.00
1545 1720 5.929992 TGGAGACGTGTATTTCTTTTACAGG 59.070 40.000 0.00 0.00 39.88 4.00
1546 1721 6.128634 GGTGGAGACGTGTATTTCTTTTACAG 60.129 42.308 0.00 0.00 30.54 2.74
1547 1722 5.697633 GGTGGAGACGTGTATTTCTTTTACA 59.302 40.000 0.00 0.00 0.00 2.41
1548 1723 5.164022 CGGTGGAGACGTGTATTTCTTTTAC 60.164 44.000 0.00 0.00 0.00 2.01
1549 1724 4.925054 CGGTGGAGACGTGTATTTCTTTTA 59.075 41.667 0.00 0.00 0.00 1.52
1550 1725 3.744426 CGGTGGAGACGTGTATTTCTTTT 59.256 43.478 0.00 0.00 0.00 2.27
1551 1726 3.323243 CGGTGGAGACGTGTATTTCTTT 58.677 45.455 0.00 0.00 0.00 2.52
1552 1727 2.353406 CCGGTGGAGACGTGTATTTCTT 60.353 50.000 0.00 0.00 0.00 2.52
1553 1728 1.203994 CCGGTGGAGACGTGTATTTCT 59.796 52.381 0.00 0.00 0.00 2.52
1554 1729 1.636988 CCGGTGGAGACGTGTATTTC 58.363 55.000 0.00 0.00 0.00 2.17
1555 1730 0.390735 GCCGGTGGAGACGTGTATTT 60.391 55.000 1.90 0.00 0.00 1.40
1556 1731 1.217244 GCCGGTGGAGACGTGTATT 59.783 57.895 1.90 0.00 0.00 1.89
1557 1732 2.718073 GGCCGGTGGAGACGTGTAT 61.718 63.158 1.90 0.00 0.00 2.29
1558 1733 3.376078 GGCCGGTGGAGACGTGTA 61.376 66.667 1.90 0.00 0.00 2.90
1570 1745 1.933115 CTGGAAATGAAACCGGCCGG 61.933 60.000 42.17 42.17 42.03 6.13
1571 1746 1.241315 ACTGGAAATGAAACCGGCCG 61.241 55.000 21.04 21.04 36.12 6.13
1572 1747 0.526211 GACTGGAAATGAAACCGGCC 59.474 55.000 0.00 0.00 36.12 6.13
1573 1748 0.168128 CGACTGGAAATGAAACCGGC 59.832 55.000 0.00 0.00 36.12 6.13
1574 1749 0.802494 CCGACTGGAAATGAAACCGG 59.198 55.000 0.00 0.00 37.49 5.28
1575 1750 1.803334 TCCGACTGGAAATGAAACCG 58.197 50.000 0.00 0.00 42.85 4.44
1585 1760 1.003118 CATGAGGGTTTTCCGACTGGA 59.997 52.381 0.00 0.00 44.61 3.86
1586 1761 1.453155 CATGAGGGTTTTCCGACTGG 58.547 55.000 0.00 0.00 41.82 4.00
1587 1762 0.804989 GCATGAGGGTTTTCCGACTG 59.195 55.000 0.00 0.00 41.82 3.51
1588 1763 0.322546 GGCATGAGGGTTTTCCGACT 60.323 55.000 0.00 0.00 41.82 4.18
1589 1764 1.313091 GGGCATGAGGGTTTTCCGAC 61.313 60.000 0.00 0.00 41.82 4.79
1590 1765 1.001393 GGGCATGAGGGTTTTCCGA 60.001 57.895 0.00 0.00 41.82 4.55
1591 1766 1.304052 TGGGCATGAGGGTTTTCCG 60.304 57.895 0.00 0.00 41.82 4.30
1592 1767 0.251787 ACTGGGCATGAGGGTTTTCC 60.252 55.000 0.00 0.00 39.75 3.13
1593 1768 2.507407 TACTGGGCATGAGGGTTTTC 57.493 50.000 0.00 0.00 0.00 2.29
1594 1769 2.990740 TTACTGGGCATGAGGGTTTT 57.009 45.000 0.00 0.00 0.00 2.43
1595 1770 2.990740 TTTACTGGGCATGAGGGTTT 57.009 45.000 0.00 0.00 0.00 3.27
1596 1771 2.990740 TTTTACTGGGCATGAGGGTT 57.009 45.000 0.00 0.00 0.00 4.11
1597 1772 3.268334 TGTATTTTACTGGGCATGAGGGT 59.732 43.478 0.00 0.00 0.00 4.34
1598 1773 3.632145 GTGTATTTTACTGGGCATGAGGG 59.368 47.826 0.00 0.00 0.00 4.30
1599 1774 4.526970 AGTGTATTTTACTGGGCATGAGG 58.473 43.478 0.00 0.00 0.00 3.86
1600 1775 5.415701 ACAAGTGTATTTTACTGGGCATGAG 59.584 40.000 0.00 0.00 0.00 2.90
1601 1776 5.321102 ACAAGTGTATTTTACTGGGCATGA 58.679 37.500 0.00 0.00 0.00 3.07
1602 1777 5.643379 ACAAGTGTATTTTACTGGGCATG 57.357 39.130 0.00 0.00 0.00 4.06
1603 1778 7.768807 TTTACAAGTGTATTTTACTGGGCAT 57.231 32.000 0.00 0.00 0.00 4.40
1604 1779 7.668052 AGATTTACAAGTGTATTTTACTGGGCA 59.332 33.333 0.00 0.00 0.00 5.36
1605 1780 8.051901 AGATTTACAAGTGTATTTTACTGGGC 57.948 34.615 0.00 0.00 0.00 5.36
1614 1789 9.436957 CAGAGGTGTAAGATTTACAAGTGTATT 57.563 33.333 3.44 0.00 0.00 1.89
1615 1790 8.594550 ACAGAGGTGTAAGATTTACAAGTGTAT 58.405 33.333 3.44 0.00 34.05 2.29
1616 1791 7.959175 ACAGAGGTGTAAGATTTACAAGTGTA 58.041 34.615 3.44 0.00 34.05 2.90
1617 1792 6.827727 ACAGAGGTGTAAGATTTACAAGTGT 58.172 36.000 3.44 3.24 34.05 3.55
1618 1793 9.436957 AATACAGAGGTGTAAGATTTACAAGTG 57.563 33.333 3.44 2.74 42.54 3.16
1619 1794 9.436957 CAATACAGAGGTGTAAGATTTACAAGT 57.563 33.333 3.44 2.06 42.54 3.16
1620 1795 9.653287 TCAATACAGAGGTGTAAGATTTACAAG 57.347 33.333 3.44 0.00 42.54 3.16
1627 1802 9.601217 GTGTAATTCAATACAGAGGTGTAAGAT 57.399 33.333 0.00 0.00 42.54 2.40
1628 1803 8.038944 GGTGTAATTCAATACAGAGGTGTAAGA 58.961 37.037 0.00 0.00 42.54 2.10
1629 1804 8.041323 AGGTGTAATTCAATACAGAGGTGTAAG 58.959 37.037 0.00 0.00 42.54 2.34
1630 1805 7.913789 AGGTGTAATTCAATACAGAGGTGTAA 58.086 34.615 0.00 0.00 42.54 2.41
1631 1806 7.490657 AGGTGTAATTCAATACAGAGGTGTA 57.509 36.000 0.00 0.00 43.43 2.90
1632 1807 6.374417 AGGTGTAATTCAATACAGAGGTGT 57.626 37.500 0.00 0.00 36.51 4.16
1633 1808 9.477484 GTATAGGTGTAATTCAATACAGAGGTG 57.523 37.037 0.00 0.00 36.51 4.00
1634 1809 8.648693 GGTATAGGTGTAATTCAATACAGAGGT 58.351 37.037 0.00 0.00 36.51 3.85
1635 1810 8.647796 TGGTATAGGTGTAATTCAATACAGAGG 58.352 37.037 0.00 0.00 36.51 3.69
1638 1813 8.774586 GCTTGGTATAGGTGTAATTCAATACAG 58.225 37.037 0.00 0.00 36.51 2.74
1639 1814 7.439955 CGCTTGGTATAGGTGTAATTCAATACA 59.560 37.037 0.00 0.00 33.52 2.29
1640 1815 7.570691 GCGCTTGGTATAGGTGTAATTCAATAC 60.571 40.741 0.00 0.00 0.00 1.89
1641 1816 6.425721 GCGCTTGGTATAGGTGTAATTCAATA 59.574 38.462 0.00 0.00 0.00 1.90
1642 1817 5.238650 GCGCTTGGTATAGGTGTAATTCAAT 59.761 40.000 0.00 0.00 0.00 2.57
1643 1818 4.573201 GCGCTTGGTATAGGTGTAATTCAA 59.427 41.667 0.00 0.00 0.00 2.69
1644 1819 4.124238 GCGCTTGGTATAGGTGTAATTCA 58.876 43.478 0.00 0.00 0.00 2.57
1645 1820 3.183775 CGCGCTTGGTATAGGTGTAATTC 59.816 47.826 5.56 0.00 0.00 2.17
1646 1821 3.128349 CGCGCTTGGTATAGGTGTAATT 58.872 45.455 5.56 0.00 0.00 1.40
1647 1822 2.750948 CGCGCTTGGTATAGGTGTAAT 58.249 47.619 5.56 0.00 0.00 1.89
1648 1823 1.803625 GCGCGCTTGGTATAGGTGTAA 60.804 52.381 26.67 0.00 0.00 2.41
1649 1824 0.249155 GCGCGCTTGGTATAGGTGTA 60.249 55.000 26.67 0.00 0.00 2.90
1650 1825 1.520787 GCGCGCTTGGTATAGGTGT 60.521 57.895 26.67 0.00 0.00 4.16
1651 1826 2.244651 GGCGCGCTTGGTATAGGTG 61.245 63.158 32.29 0.00 0.00 4.00
1652 1827 2.108362 GGCGCGCTTGGTATAGGT 59.892 61.111 32.29 0.00 0.00 3.08
1653 1828 2.660258 AAGGGCGCGCTTGGTATAGG 62.660 60.000 35.29 0.00 0.00 2.57
1654 1829 0.032952 TAAGGGCGCGCTTGGTATAG 59.967 55.000 40.07 0.00 0.00 1.31
1655 1830 0.682852 ATAAGGGCGCGCTTGGTATA 59.317 50.000 40.07 25.43 0.00 1.47
1656 1831 0.682852 TATAAGGGCGCGCTTGGTAT 59.317 50.000 40.07 29.81 0.00 2.73
1657 1832 0.682852 ATATAAGGGCGCGCTTGGTA 59.317 50.000 40.07 31.80 0.00 3.25
1658 1833 0.884704 CATATAAGGGCGCGCTTGGT 60.885 55.000 40.07 30.95 0.00 3.67
1659 1834 0.884704 ACATATAAGGGCGCGCTTGG 60.885 55.000 40.07 29.06 0.00 3.61
1660 1835 0.235665 CACATATAAGGGCGCGCTTG 59.764 55.000 40.07 29.55 0.00 4.01
1661 1836 0.179056 ACACATATAAGGGCGCGCTT 60.179 50.000 36.91 36.91 0.00 4.68
1662 1837 0.600255 GACACATATAAGGGCGCGCT 60.600 55.000 32.29 22.73 0.00 5.92
1663 1838 1.566018 GGACACATATAAGGGCGCGC 61.566 60.000 25.94 25.94 0.00 6.86
1664 1839 0.033504 AGGACACATATAAGGGCGCG 59.966 55.000 0.00 0.00 0.00 6.86
1665 1840 2.256117 AAGGACACATATAAGGGCGC 57.744 50.000 0.00 0.00 0.00 6.53
1666 1841 2.800544 CGAAAGGACACATATAAGGGCG 59.199 50.000 0.00 0.00 0.00 6.13
1686 1861 2.093152 CGAACGAAATAAGAACACCCCG 59.907 50.000 0.00 0.00 0.00 5.73
1734 1939 3.452990 TCCGTTAAGATGGCCTTGTATGA 59.547 43.478 3.32 0.00 36.34 2.15
1737 1942 2.835764 ACTCCGTTAAGATGGCCTTGTA 59.164 45.455 3.32 0.00 36.34 2.41
1838 2045 8.909708 TGAAATGTTGAACTCACAAAGTAAAG 57.090 30.769 0.00 0.00 37.17 1.85
2097 2304 1.867233 TGAAGCTTCTCGTTTCTGTGC 59.133 47.619 26.09 0.00 34.34 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.