Multiple sequence alignment - TraesCS3D01G056700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G056700 chr3D 100.000 3926 0 0 1 3926 23732231 23728306 0.000000e+00 7251.0
1 TraesCS3D01G056700 chr3D 85.499 1793 225 27 1037 2807 23230969 23229190 0.000000e+00 1838.0
2 TraesCS3D01G056700 chr3D 87.600 1379 149 21 1430 2803 23858140 23859501 0.000000e+00 1580.0
3 TraesCS3D01G056700 chr3D 84.524 588 48 20 822 1387 23734844 23734278 3.450000e-150 542.0
4 TraesCS3D01G056700 chr3D 75.976 845 168 26 1974 2802 501162989 501162164 1.700000e-108 403.0
5 TraesCS3D01G056700 chr3D 83.036 448 51 14 994 1430 23857635 23858068 2.210000e-102 383.0
6 TraesCS3D01G056700 chr3D 84.354 294 26 10 822 1101 23886060 23885773 1.800000e-68 270.0
7 TraesCS3D01G056700 chr3D 93.631 157 6 3 409 561 24641301 24641457 8.480000e-57 231.0
8 TraesCS3D01G056700 chr3D 91.150 113 9 1 3319 3430 23729493 23729381 6.790000e-33 152.0
9 TraesCS3D01G056700 chr3B 93.691 2330 104 16 605 2898 42124804 42127126 0.000000e+00 3448.0
10 TraesCS3D01G056700 chr3B 86.605 1620 195 16 1194 2807 41015776 41014173 0.000000e+00 1770.0
11 TraesCS3D01G056700 chr3B 93.486 1136 53 5 2797 3926 42127076 42128196 0.000000e+00 1668.0
12 TraesCS3D01G056700 chr3B 87.910 1373 144 21 1436 2803 42047859 42046504 0.000000e+00 1596.0
13 TraesCS3D01G056700 chr3B 87.627 1382 143 25 1430 2803 41800647 41802008 0.000000e+00 1580.0
14 TraesCS3D01G056700 chr3B 88.672 256 16 6 1 256 42067555 42067797 2.290000e-77 300.0
15 TraesCS3D01G056700 chr3B 88.672 256 16 6 1 256 42093973 42094215 2.290000e-77 300.0
16 TraesCS3D01G056700 chr3B 86.957 161 17 4 257 413 654649875 654649715 1.120000e-40 178.0
17 TraesCS3D01G056700 chr3B 92.727 55 3 1 2797 2851 42127127 42127180 1.170000e-10 78.7
18 TraesCS3D01G056700 chr3A 95.180 1971 77 11 949 2901 32876747 32874777 0.000000e+00 3097.0
19 TraesCS3D01G056700 chr3A 85.611 1800 220 29 1033 2807 32426236 32428021 0.000000e+00 1853.0
20 TraesCS3D01G056700 chr3A 88.348 1150 68 26 2804 3926 32874824 32873714 0.000000e+00 1321.0
21 TraesCS3D01G056700 chr3A 93.029 373 19 4 3542 3910 32863265 32862896 4.460000e-149 538.0
22 TraesCS3D01G056700 chr3A 91.346 312 14 4 605 903 32877055 32876744 7.850000e-112 414.0
23 TraesCS3D01G056700 chr3A 88.601 193 12 3 67 256 32877269 32877084 3.950000e-55 226.0
24 TraesCS3D01G056700 chr3A 83.071 254 19 9 1081 1324 32883363 32883124 3.980000e-50 209.0
25 TraesCS3D01G056700 chr3A 84.305 223 20 10 833 1047 32883574 32883359 1.850000e-48 204.0
26 TraesCS3D01G056700 chr3A 97.143 35 1 0 3223 3257 518908176 518908210 4.240000e-05 60.2
27 TraesCS3D01G056700 chr2A 91.566 1814 139 8 1034 2845 672946737 672944936 0.000000e+00 2490.0
28 TraesCS3D01G056700 chr2A 94.340 159 5 2 409 563 18882793 18882635 1.410000e-59 241.0
29 TraesCS3D01G056700 chr2D 91.118 1824 144 9 1024 2845 528100191 528098384 0.000000e+00 2455.0
30 TraesCS3D01G056700 chr2D 93.168 161 7 3 409 565 620552054 620552214 2.360000e-57 233.0
31 TraesCS3D01G056700 chr2D 93.631 157 6 3 409 561 641491160 641491316 8.480000e-57 231.0
32 TraesCS3D01G056700 chr2D 86.826 167 16 6 252 413 296364218 296364053 8.670000e-42 182.0
33 TraesCS3D01G056700 chr2D 88.235 153 13 5 260 408 305517899 305517748 1.120000e-40 178.0
34 TraesCS3D01G056700 chr2B 90.844 1824 149 9 1024 2845 626092169 626090362 0.000000e+00 2427.0
35 TraesCS3D01G056700 chr2B 87.898 157 15 4 252 405 366017510 366017665 8.670000e-42 182.0
36 TraesCS3D01G056700 chr2B 77.326 172 28 9 3069 3235 142673440 142673605 1.500000e-14 91.6
37 TraesCS3D01G056700 chrUn 76.961 1619 309 50 1211 2794 100089642 100091231 0.000000e+00 865.0
38 TraesCS3D01G056700 chrUn 92.339 248 16 3 1185 1430 373565507 373565261 2.240000e-92 350.0
39 TraesCS3D01G056700 chrUn 88.672 256 16 6 1 256 305874483 305874725 2.290000e-77 300.0
40 TraesCS3D01G056700 chrUn 80.603 232 42 1 2570 2801 38571877 38571649 4.030000e-40 176.0
41 TraesCS3D01G056700 chrUn 80.603 232 42 1 2570 2801 283369042 283369270 4.030000e-40 176.0
42 TraesCS3D01G056700 chrUn 80.603 232 42 1 2570 2801 359469462 359469690 4.030000e-40 176.0
43 TraesCS3D01G056700 chr4B 76.838 1619 308 50 1214 2794 672129822 672128233 0.000000e+00 850.0
44 TraesCS3D01G056700 chr5A 76.463 1623 312 51 1211 2794 658989323 658990914 0.000000e+00 817.0
45 TraesCS3D01G056700 chr5A 87.421 159 16 3 259 413 475324367 475324525 3.120000e-41 180.0
46 TraesCS3D01G056700 chr7D 94.805 154 6 2 409 560 7568281 7568434 5.070000e-59 239.0
47 TraesCS3D01G056700 chr6A 94.231 156 6 3 409 561 5126752 5126907 6.560000e-58 235.0
48 TraesCS3D01G056700 chr5D 93.082 159 9 2 409 565 464614644 464614802 8.480000e-57 231.0
49 TraesCS3D01G056700 chr5D 87.425 167 14 7 254 414 412100089 412100254 6.700000e-43 185.0
50 TraesCS3D01G056700 chr4D 93.082 159 9 2 409 565 12696044 12695886 8.480000e-57 231.0
51 TraesCS3D01G056700 chr1D 92.994 157 9 2 408 562 485095299 485095143 1.100000e-55 228.0
52 TraesCS3D01G056700 chr7B 88.485 165 14 4 254 413 102234310 102234474 1.110000e-45 195.0
53 TraesCS3D01G056700 chr5B 89.103 156 13 4 260 412 147437481 147437327 1.440000e-44 191.0
54 TraesCS3D01G056700 chr4A 87.421 159 16 4 259 413 198219594 198219436 3.120000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G056700 chr3D 23728306 23732231 3925 True 3701.500000 7251 95.575000 1 3926 2 chr3D.!!$R5 3925
1 TraesCS3D01G056700 chr3D 23229190 23230969 1779 True 1838.000000 1838 85.499000 1037 2807 1 chr3D.!!$R1 1770
2 TraesCS3D01G056700 chr3D 23857635 23859501 1866 False 981.500000 1580 85.318000 994 2803 2 chr3D.!!$F2 1809
3 TraesCS3D01G056700 chr3D 23734278 23734844 566 True 542.000000 542 84.524000 822 1387 1 chr3D.!!$R2 565
4 TraesCS3D01G056700 chr3D 501162164 501162989 825 True 403.000000 403 75.976000 1974 2802 1 chr3D.!!$R4 828
5 TraesCS3D01G056700 chr3B 41014173 41015776 1603 True 1770.000000 1770 86.605000 1194 2807 1 chr3B.!!$R1 1613
6 TraesCS3D01G056700 chr3B 42124804 42128196 3392 False 1731.566667 3448 93.301333 605 3926 3 chr3B.!!$F4 3321
7 TraesCS3D01G056700 chr3B 42046504 42047859 1355 True 1596.000000 1596 87.910000 1436 2803 1 chr3B.!!$R2 1367
8 TraesCS3D01G056700 chr3B 41800647 41802008 1361 False 1580.000000 1580 87.627000 1430 2803 1 chr3B.!!$F1 1373
9 TraesCS3D01G056700 chr3A 32426236 32428021 1785 False 1853.000000 1853 85.611000 1033 2807 1 chr3A.!!$F1 1774
10 TraesCS3D01G056700 chr3A 32873714 32877269 3555 True 1264.500000 3097 90.868750 67 3926 4 chr3A.!!$R2 3859
11 TraesCS3D01G056700 chr2A 672944936 672946737 1801 True 2490.000000 2490 91.566000 1034 2845 1 chr2A.!!$R2 1811
12 TraesCS3D01G056700 chr2D 528098384 528100191 1807 True 2455.000000 2455 91.118000 1024 2845 1 chr2D.!!$R3 1821
13 TraesCS3D01G056700 chr2B 626090362 626092169 1807 True 2427.000000 2427 90.844000 1024 2845 1 chr2B.!!$R1 1821
14 TraesCS3D01G056700 chrUn 100089642 100091231 1589 False 865.000000 865 76.961000 1211 2794 1 chrUn.!!$F1 1583
15 TraesCS3D01G056700 chr4B 672128233 672129822 1589 True 850.000000 850 76.838000 1214 2794 1 chr4B.!!$R1 1580
16 TraesCS3D01G056700 chr5A 658989323 658990914 1591 False 817.000000 817 76.463000 1211 2794 1 chr5A.!!$F2 1583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
457 458 0.109735 TCGCTCAGTGCTTGTAGTCG 60.110 55.0 0.0 0.0 40.11 4.18 F
471 472 0.251354 TAGTCGTCGCTAGGTGGTCT 59.749 55.0 0.0 0.0 0.00 3.85 F
472 473 0.251354 AGTCGTCGCTAGGTGGTCTA 59.749 55.0 0.0 0.0 0.00 2.59 F
473 474 0.376502 GTCGTCGCTAGGTGGTCTAC 59.623 60.0 0.0 0.0 0.00 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2148 2346 1.002659 CCCTGGAACACGAACATGGTA 59.997 52.381 0.00 0.0 0.00 3.25 R
2658 2865 0.402861 TCCACCCTTCCTTTCCACCT 60.403 55.000 0.00 0.0 0.00 4.00 R
2868 3184 0.242825 CTACTTCGTTGGCGTCCTGA 59.757 55.000 0.00 0.0 39.49 3.86 R
3049 3369 0.912486 AGACCTGGATCCTTTTCCGG 59.088 55.000 14.23 0.0 41.19 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.567138 CAGCATTTGGGGAAGTACTTAAG 57.433 43.478 8.42 0.00 0.00 1.85
23 24 4.017126 AGCATTTGGGGAAGTACTTAAGC 58.983 43.478 8.42 0.44 0.00 3.09
24 25 4.017126 GCATTTGGGGAAGTACTTAAGCT 58.983 43.478 8.42 0.00 0.00 3.74
25 26 4.096532 GCATTTGGGGAAGTACTTAAGCTC 59.903 45.833 8.42 0.00 0.00 4.09
26 27 4.986054 TTTGGGGAAGTACTTAAGCTCA 57.014 40.909 8.42 0.71 0.00 4.26
27 28 4.553330 TTGGGGAAGTACTTAAGCTCAG 57.447 45.455 8.42 0.00 0.00 3.35
28 29 3.786553 TGGGGAAGTACTTAAGCTCAGA 58.213 45.455 8.42 0.00 0.00 3.27
29 30 4.164981 TGGGGAAGTACTTAAGCTCAGAA 58.835 43.478 8.42 0.00 0.00 3.02
30 31 4.020485 TGGGGAAGTACTTAAGCTCAGAAC 60.020 45.833 8.42 0.00 0.00 3.01
31 32 4.020485 GGGGAAGTACTTAAGCTCAGAACA 60.020 45.833 8.42 0.00 0.00 3.18
32 33 4.930405 GGGAAGTACTTAAGCTCAGAACAC 59.070 45.833 8.42 0.00 0.00 3.32
33 34 4.930405 GGAAGTACTTAAGCTCAGAACACC 59.070 45.833 8.42 0.00 0.00 4.16
34 35 5.279556 GGAAGTACTTAAGCTCAGAACACCT 60.280 44.000 8.42 0.00 0.00 4.00
35 36 5.140747 AGTACTTAAGCTCAGAACACCTG 57.859 43.478 1.29 0.00 44.27 4.00
36 37 3.409026 ACTTAAGCTCAGAACACCTGG 57.591 47.619 1.29 0.00 43.12 4.45
37 38 2.972713 ACTTAAGCTCAGAACACCTGGA 59.027 45.455 0.00 0.00 43.12 3.86
38 39 3.007398 ACTTAAGCTCAGAACACCTGGAG 59.993 47.826 0.00 0.00 43.12 3.86
39 40 1.722034 AAGCTCAGAACACCTGGAGA 58.278 50.000 0.00 0.00 43.12 3.71
40 41 1.722034 AGCTCAGAACACCTGGAGAA 58.278 50.000 0.00 0.00 43.12 2.87
41 42 1.622811 AGCTCAGAACACCTGGAGAAG 59.377 52.381 0.00 0.00 43.12 2.85
42 43 1.620819 GCTCAGAACACCTGGAGAAGA 59.379 52.381 0.00 0.00 43.12 2.87
43 44 2.353605 GCTCAGAACACCTGGAGAAGAG 60.354 54.545 0.00 1.22 43.12 2.85
44 45 2.233431 CTCAGAACACCTGGAGAAGAGG 59.767 54.545 0.00 0.00 43.12 3.69
45 46 2.158310 TCAGAACACCTGGAGAAGAGGA 60.158 50.000 0.00 0.00 43.12 3.71
46 47 2.836981 CAGAACACCTGGAGAAGAGGAT 59.163 50.000 0.00 0.00 39.23 3.24
47 48 3.103742 AGAACACCTGGAGAAGAGGATC 58.896 50.000 0.00 0.00 34.37 3.36
48 49 1.479709 ACACCTGGAGAAGAGGATCG 58.520 55.000 0.00 0.00 42.67 3.69
49 50 1.006043 ACACCTGGAGAAGAGGATCGA 59.994 52.381 0.00 0.00 42.67 3.59
50 51 2.103373 CACCTGGAGAAGAGGATCGAA 58.897 52.381 0.00 0.00 42.67 3.71
51 52 2.100584 CACCTGGAGAAGAGGATCGAAG 59.899 54.545 0.00 0.00 42.67 3.79
52 53 2.024846 ACCTGGAGAAGAGGATCGAAGA 60.025 50.000 0.00 0.00 42.67 2.87
53 54 2.622942 CCTGGAGAAGAGGATCGAAGAG 59.377 54.545 0.00 0.00 43.63 2.85
54 55 3.550820 CTGGAGAAGAGGATCGAAGAGA 58.449 50.000 0.00 0.00 43.63 3.10
55 56 3.951037 CTGGAGAAGAGGATCGAAGAGAA 59.049 47.826 0.00 0.00 43.63 2.87
56 57 3.951037 TGGAGAAGAGGATCGAAGAGAAG 59.049 47.826 0.00 0.00 43.63 2.85
57 58 4.204012 GGAGAAGAGGATCGAAGAGAAGA 58.796 47.826 0.00 0.00 43.63 2.87
58 59 4.642885 GGAGAAGAGGATCGAAGAGAAGAA 59.357 45.833 0.00 0.00 43.63 2.52
59 60 5.449999 GGAGAAGAGGATCGAAGAGAAGAAC 60.450 48.000 0.00 0.00 43.63 3.01
60 61 4.401202 AGAAGAGGATCGAAGAGAAGAACC 59.599 45.833 0.00 0.00 43.63 3.62
61 62 3.976015 AGAGGATCGAAGAGAAGAACCT 58.024 45.455 0.00 0.00 43.63 3.50
62 63 3.699038 AGAGGATCGAAGAGAAGAACCTG 59.301 47.826 0.00 0.00 43.63 4.00
63 64 2.763448 AGGATCGAAGAGAAGAACCTGG 59.237 50.000 0.00 0.00 43.63 4.45
64 65 2.761208 GGATCGAAGAGAAGAACCTGGA 59.239 50.000 0.00 0.00 43.63 3.86
65 66 3.429684 GGATCGAAGAGAAGAACCTGGAC 60.430 52.174 0.00 0.00 43.63 4.02
69 70 1.079057 GAGAAGAACCTGGACGGCC 60.079 63.158 0.00 0.00 35.61 6.13
105 106 8.057011 TCCTTTACCTTTTTCCTGTACTCTTTT 58.943 33.333 0.00 0.00 0.00 2.27
120 121 0.393132 CTTTTTCCTCCCTCGGCTCC 60.393 60.000 0.00 0.00 0.00 4.70
132 133 1.076044 CGGCTCCCAATCCCCATTT 60.076 57.895 0.00 0.00 0.00 2.32
153 154 2.957680 TCATTGCTTGCTTCTTCACCAA 59.042 40.909 0.00 0.00 0.00 3.67
170 171 2.890945 ACCAAGTTGTACCCAGATTTGC 59.109 45.455 1.45 0.00 0.00 3.68
184 185 4.501915 CCAGATTTGCCACAATTGAGTGTT 60.502 41.667 13.59 0.00 37.82 3.32
197 198 7.008901 CACAATTGAGTGTTAATTGCATAGCAG 59.991 37.037 13.59 0.00 45.06 4.24
203 204 5.352569 AGTGTTAATTGCATAGCAGTGAGTC 59.647 40.000 0.00 0.00 40.61 3.36
213 214 1.282875 CAGTGAGTCGAGCGTGACA 59.717 57.895 12.84 0.00 41.41 3.58
215 216 1.167155 AGTGAGTCGAGCGTGACAGT 61.167 55.000 12.84 0.00 41.41 3.55
218 219 1.202371 TGAGTCGAGCGTGACAGTTTT 60.202 47.619 12.84 0.00 41.41 2.43
219 220 1.859080 GAGTCGAGCGTGACAGTTTTT 59.141 47.619 12.84 0.00 41.41 1.94
266 267 8.829373 AAAATCTTCTTTATGCAATACTCCCT 57.171 30.769 0.00 0.00 0.00 4.20
267 268 8.457238 AAATCTTCTTTATGCAATACTCCCTC 57.543 34.615 0.00 0.00 0.00 4.30
268 269 5.930135 TCTTCTTTATGCAATACTCCCTCC 58.070 41.667 0.00 0.00 0.00 4.30
269 270 4.336889 TCTTTATGCAATACTCCCTCCG 57.663 45.455 0.00 0.00 0.00 4.63
270 271 3.709653 TCTTTATGCAATACTCCCTCCGT 59.290 43.478 0.00 0.00 0.00 4.69
271 272 4.163458 TCTTTATGCAATACTCCCTCCGTT 59.837 41.667 0.00 0.00 0.00 4.44
272 273 2.622064 ATGCAATACTCCCTCCGTTC 57.378 50.000 0.00 0.00 0.00 3.95
273 274 0.539986 TGCAATACTCCCTCCGTTCC 59.460 55.000 0.00 0.00 0.00 3.62
274 275 0.539986 GCAATACTCCCTCCGTTCCA 59.460 55.000 0.00 0.00 0.00 3.53
275 276 1.065709 GCAATACTCCCTCCGTTCCAA 60.066 52.381 0.00 0.00 0.00 3.53
276 277 2.617021 GCAATACTCCCTCCGTTCCAAA 60.617 50.000 0.00 0.00 0.00 3.28
277 278 3.681593 CAATACTCCCTCCGTTCCAAAA 58.318 45.455 0.00 0.00 0.00 2.44
278 279 4.270008 CAATACTCCCTCCGTTCCAAAAT 58.730 43.478 0.00 0.00 0.00 1.82
279 280 2.200373 ACTCCCTCCGTTCCAAAATG 57.800 50.000 0.00 0.00 0.00 2.32
280 281 0.811281 CTCCCTCCGTTCCAAAATGC 59.189 55.000 0.00 0.00 0.00 3.56
281 282 0.111446 TCCCTCCGTTCCAAAATGCA 59.889 50.000 0.00 0.00 0.00 3.96
282 283 0.965439 CCCTCCGTTCCAAAATGCAA 59.035 50.000 0.00 0.00 0.00 4.08
283 284 1.067635 CCCTCCGTTCCAAAATGCAAG 60.068 52.381 0.00 0.00 0.00 4.01
284 285 1.613437 CCTCCGTTCCAAAATGCAAGT 59.387 47.619 0.00 0.00 0.00 3.16
285 286 2.035832 CCTCCGTTCCAAAATGCAAGTT 59.964 45.455 0.00 0.00 0.00 2.66
286 287 3.492482 CCTCCGTTCCAAAATGCAAGTTT 60.492 43.478 0.00 0.00 32.39 2.66
287 288 4.119136 CTCCGTTCCAAAATGCAAGTTTT 58.881 39.130 0.00 0.00 27.89 2.43
288 289 4.508662 TCCGTTCCAAAATGCAAGTTTTT 58.491 34.783 0.00 0.00 27.89 1.94
289 290 5.661458 TCCGTTCCAAAATGCAAGTTTTTA 58.339 33.333 0.00 0.00 27.89 1.52
290 291 5.751028 TCCGTTCCAAAATGCAAGTTTTTAG 59.249 36.000 0.00 0.00 27.89 1.85
291 292 5.751028 CCGTTCCAAAATGCAAGTTTTTAGA 59.249 36.000 0.00 0.00 27.89 2.10
292 293 6.074356 CCGTTCCAAAATGCAAGTTTTTAGAG 60.074 38.462 0.00 0.00 27.89 2.43
293 294 6.695278 CGTTCCAAAATGCAAGTTTTTAGAGA 59.305 34.615 0.00 0.00 27.89 3.10
294 295 7.382218 CGTTCCAAAATGCAAGTTTTTAGAGAT 59.618 33.333 0.00 0.00 27.89 2.75
295 296 9.045223 GTTCCAAAATGCAAGTTTTTAGAGATT 57.955 29.630 0.00 0.00 27.89 2.40
296 297 8.816640 TCCAAAATGCAAGTTTTTAGAGATTC 57.183 30.769 0.00 0.00 27.89 2.52
297 298 7.872483 TCCAAAATGCAAGTTTTTAGAGATTCC 59.128 33.333 0.00 0.00 27.89 3.01
298 299 7.656948 CCAAAATGCAAGTTTTTAGAGATTCCA 59.343 33.333 0.00 0.00 27.89 3.53
299 300 9.044150 CAAAATGCAAGTTTTTAGAGATTCCAA 57.956 29.630 0.00 0.00 27.89 3.53
300 301 9.783081 AAAATGCAAGTTTTTAGAGATTCCAAT 57.217 25.926 0.00 0.00 23.62 3.16
336 337 7.692460 ATCAAGCAAAATGAGTGAATCTACA 57.308 32.000 0.00 0.00 0.00 2.74
337 338 6.902341 TCAAGCAAAATGAGTGAATCTACAC 58.098 36.000 0.00 0.00 40.60 2.90
414 415 8.982091 AAAGACTTATATTTAGAAAGAGGGGC 57.018 34.615 0.00 0.00 0.00 5.80
415 416 6.760291 AGACTTATATTTAGAAAGAGGGGCG 58.240 40.000 0.00 0.00 0.00 6.13
416 417 6.553852 AGACTTATATTTAGAAAGAGGGGCGA 59.446 38.462 0.00 0.00 0.00 5.54
417 418 7.235812 AGACTTATATTTAGAAAGAGGGGCGAT 59.764 37.037 0.00 0.00 0.00 4.58
418 419 7.162082 ACTTATATTTAGAAAGAGGGGCGATG 58.838 38.462 0.00 0.00 0.00 3.84
419 420 5.825593 ATATTTAGAAAGAGGGGCGATGA 57.174 39.130 0.00 0.00 0.00 2.92
420 421 2.981859 TTAGAAAGAGGGGCGATGAC 57.018 50.000 0.00 0.00 0.00 3.06
421 422 1.860641 TAGAAAGAGGGGCGATGACA 58.139 50.000 0.00 0.00 0.00 3.58
422 423 0.539051 AGAAAGAGGGGCGATGACAG 59.461 55.000 0.00 0.00 0.00 3.51
423 424 1.078143 AAAGAGGGGCGATGACAGC 60.078 57.895 0.00 0.00 0.00 4.40
424 425 2.859273 AAAGAGGGGCGATGACAGCG 62.859 60.000 9.11 9.11 35.00 5.18
425 426 4.899239 GAGGGGCGATGACAGCGG 62.899 72.222 15.74 0.00 35.00 5.52
446 447 4.443266 GCCTTCGGCTCGCTCAGT 62.443 66.667 0.00 0.00 46.69 3.41
447 448 2.507992 CCTTCGGCTCGCTCAGTG 60.508 66.667 0.00 0.00 0.00 3.66
448 449 3.184683 CTTCGGCTCGCTCAGTGC 61.185 66.667 0.00 0.00 38.53 4.40
449 450 3.639541 CTTCGGCTCGCTCAGTGCT 62.640 63.158 0.00 0.00 39.18 4.40
450 451 3.226429 TTCGGCTCGCTCAGTGCTT 62.226 57.895 0.00 0.00 39.18 3.91
451 452 3.485431 CGGCTCGCTCAGTGCTTG 61.485 66.667 0.00 0.00 39.18 4.01
452 453 2.358003 GGCTCGCTCAGTGCTTGT 60.358 61.111 0.00 0.00 39.18 3.16
453 454 1.079819 GGCTCGCTCAGTGCTTGTA 60.080 57.895 0.00 0.00 39.18 2.41
454 455 1.080995 GGCTCGCTCAGTGCTTGTAG 61.081 60.000 0.00 0.00 39.18 2.74
455 456 0.389166 GCTCGCTCAGTGCTTGTAGT 60.389 55.000 0.00 0.00 40.11 2.73
456 457 1.623359 CTCGCTCAGTGCTTGTAGTC 58.377 55.000 0.00 0.00 40.11 2.59
457 458 0.109735 TCGCTCAGTGCTTGTAGTCG 60.110 55.000 0.00 0.00 40.11 4.18
458 459 0.387367 CGCTCAGTGCTTGTAGTCGT 60.387 55.000 0.00 0.00 40.11 4.34
459 460 1.341606 GCTCAGTGCTTGTAGTCGTC 58.658 55.000 0.00 0.00 38.95 4.20
460 461 1.607713 CTCAGTGCTTGTAGTCGTCG 58.392 55.000 0.00 0.00 0.00 5.12
461 462 0.386858 TCAGTGCTTGTAGTCGTCGC 60.387 55.000 0.00 0.00 0.00 5.19
462 463 0.387367 CAGTGCTTGTAGTCGTCGCT 60.387 55.000 0.00 0.00 0.00 4.93
463 464 1.135774 CAGTGCTTGTAGTCGTCGCTA 60.136 52.381 0.00 0.00 0.00 4.26
464 465 1.130749 AGTGCTTGTAGTCGTCGCTAG 59.869 52.381 0.00 0.00 0.00 3.42
465 466 0.450583 TGCTTGTAGTCGTCGCTAGG 59.549 55.000 0.00 0.00 0.00 3.02
466 467 0.450983 GCTTGTAGTCGTCGCTAGGT 59.549 55.000 0.00 0.00 0.00 3.08
467 468 1.794437 GCTTGTAGTCGTCGCTAGGTG 60.794 57.143 0.00 0.00 0.00 4.00
468 469 0.806868 TTGTAGTCGTCGCTAGGTGG 59.193 55.000 0.00 0.00 0.00 4.61
469 470 0.321919 TGTAGTCGTCGCTAGGTGGT 60.322 55.000 0.00 0.00 0.00 4.16
470 471 0.376502 GTAGTCGTCGCTAGGTGGTC 59.623 60.000 0.00 0.00 0.00 4.02
471 472 0.251354 TAGTCGTCGCTAGGTGGTCT 59.749 55.000 0.00 0.00 0.00 3.85
472 473 0.251354 AGTCGTCGCTAGGTGGTCTA 59.749 55.000 0.00 0.00 0.00 2.59
473 474 0.376502 GTCGTCGCTAGGTGGTCTAC 59.623 60.000 0.00 0.00 0.00 2.59
474 475 1.086067 TCGTCGCTAGGTGGTCTACG 61.086 60.000 0.00 0.00 0.00 3.51
475 476 1.726265 GTCGCTAGGTGGTCTACGG 59.274 63.158 0.00 0.00 0.00 4.02
476 477 0.745845 GTCGCTAGGTGGTCTACGGA 60.746 60.000 0.00 0.00 0.00 4.69
477 478 0.745845 TCGCTAGGTGGTCTACGGAC 60.746 60.000 0.00 0.00 41.43 4.79
489 490 4.667519 GTCTACGGACCTGGATGTAATT 57.332 45.455 0.00 0.00 36.53 1.40
490 491 5.019785 GTCTACGGACCTGGATGTAATTT 57.980 43.478 0.00 0.00 36.53 1.82
491 492 5.425630 GTCTACGGACCTGGATGTAATTTT 58.574 41.667 0.00 0.00 36.53 1.82
492 493 5.878669 GTCTACGGACCTGGATGTAATTTTT 59.121 40.000 0.00 0.00 36.53 1.94
493 494 7.043565 GTCTACGGACCTGGATGTAATTTTTA 58.956 38.462 0.00 0.00 36.53 1.52
494 495 7.713942 GTCTACGGACCTGGATGTAATTTTTAT 59.286 37.037 0.00 0.00 36.53 1.40
495 496 8.269317 TCTACGGACCTGGATGTAATTTTTATT 58.731 33.333 0.00 0.00 0.00 1.40
496 497 9.550406 CTACGGACCTGGATGTAATTTTTATTA 57.450 33.333 0.00 0.00 0.00 0.98
497 498 8.990163 ACGGACCTGGATGTAATTTTTATTAT 57.010 30.769 0.00 0.00 0.00 1.28
498 499 9.416284 ACGGACCTGGATGTAATTTTTATTATT 57.584 29.630 0.00 0.00 0.00 1.40
518 519 4.364415 TTTCTGGTGTTTGTTGTACTGC 57.636 40.909 0.00 0.00 0.00 4.40
519 520 2.294074 TCTGGTGTTTGTTGTACTGCC 58.706 47.619 0.00 0.00 0.00 4.85
520 521 2.020720 CTGGTGTTTGTTGTACTGCCA 58.979 47.619 0.00 0.00 0.00 4.92
521 522 2.622942 CTGGTGTTTGTTGTACTGCCAT 59.377 45.455 0.00 0.00 0.00 4.40
522 523 2.360483 TGGTGTTTGTTGTACTGCCATG 59.640 45.455 0.00 0.00 0.00 3.66
523 524 2.621055 GGTGTTTGTTGTACTGCCATGA 59.379 45.455 0.00 0.00 0.00 3.07
524 525 3.255642 GGTGTTTGTTGTACTGCCATGAT 59.744 43.478 0.00 0.00 0.00 2.45
525 526 4.261994 GGTGTTTGTTGTACTGCCATGATT 60.262 41.667 0.00 0.00 0.00 2.57
526 527 4.681025 GTGTTTGTTGTACTGCCATGATTG 59.319 41.667 0.00 0.00 0.00 2.67
527 528 4.582240 TGTTTGTTGTACTGCCATGATTGA 59.418 37.500 0.00 0.00 0.00 2.57
528 529 5.068329 TGTTTGTTGTACTGCCATGATTGAA 59.932 36.000 0.00 0.00 0.00 2.69
529 530 5.375417 TTGTTGTACTGCCATGATTGAAG 57.625 39.130 0.00 0.00 0.00 3.02
530 531 4.650734 TGTTGTACTGCCATGATTGAAGA 58.349 39.130 0.00 0.00 0.00 2.87
531 532 5.255687 TGTTGTACTGCCATGATTGAAGAT 58.744 37.500 0.00 0.00 0.00 2.40
532 533 5.124297 TGTTGTACTGCCATGATTGAAGATG 59.876 40.000 0.00 0.00 0.00 2.90
533 534 5.101648 TGTACTGCCATGATTGAAGATGA 57.898 39.130 0.00 0.00 0.00 2.92
534 535 5.499313 TGTACTGCCATGATTGAAGATGAA 58.501 37.500 0.00 0.00 0.00 2.57
535 536 6.124340 TGTACTGCCATGATTGAAGATGAAT 58.876 36.000 0.00 0.00 0.00 2.57
536 537 7.281841 TGTACTGCCATGATTGAAGATGAATA 58.718 34.615 0.00 0.00 0.00 1.75
537 538 6.879276 ACTGCCATGATTGAAGATGAATAG 57.121 37.500 0.00 0.00 0.00 1.73
538 539 5.768662 ACTGCCATGATTGAAGATGAATAGG 59.231 40.000 0.00 0.00 0.00 2.57
539 540 5.698104 TGCCATGATTGAAGATGAATAGGT 58.302 37.500 0.00 0.00 0.00 3.08
540 541 5.766670 TGCCATGATTGAAGATGAATAGGTC 59.233 40.000 0.00 0.00 0.00 3.85
541 542 5.106791 GCCATGATTGAAGATGAATAGGTCG 60.107 44.000 0.00 0.00 0.00 4.79
542 543 6.226052 CCATGATTGAAGATGAATAGGTCGA 58.774 40.000 0.00 0.00 0.00 4.20
543 544 6.707608 CCATGATTGAAGATGAATAGGTCGAA 59.292 38.462 0.00 0.00 0.00 3.71
544 545 7.227314 CCATGATTGAAGATGAATAGGTCGAAA 59.773 37.037 0.00 0.00 0.00 3.46
545 546 7.776933 TGATTGAAGATGAATAGGTCGAAAG 57.223 36.000 0.00 0.00 0.00 2.62
546 547 7.331026 TGATTGAAGATGAATAGGTCGAAAGT 58.669 34.615 0.00 0.00 0.00 2.66
547 548 7.824289 TGATTGAAGATGAATAGGTCGAAAGTT 59.176 33.333 0.00 0.00 0.00 2.66
548 549 7.979444 TTGAAGATGAATAGGTCGAAAGTTT 57.021 32.000 0.00 0.00 0.00 2.66
549 550 7.979444 TGAAGATGAATAGGTCGAAAGTTTT 57.021 32.000 0.00 0.00 0.00 2.43
550 551 8.029642 TGAAGATGAATAGGTCGAAAGTTTTC 57.970 34.615 0.00 0.00 0.00 2.29
551 552 7.659799 TGAAGATGAATAGGTCGAAAGTTTTCA 59.340 33.333 5.55 0.00 37.01 2.69
552 553 7.979444 AGATGAATAGGTCGAAAGTTTTCAA 57.021 32.000 5.55 0.00 37.01 2.69
553 554 8.391075 AGATGAATAGGTCGAAAGTTTTCAAA 57.609 30.769 5.55 0.00 37.01 2.69
554 555 8.846211 AGATGAATAGGTCGAAAGTTTTCAAAA 58.154 29.630 5.55 0.00 37.01 2.44
555 556 9.458374 GATGAATAGGTCGAAAGTTTTCAAAAA 57.542 29.630 5.55 0.00 37.01 1.94
582 583 8.681486 AAAACGAAGGGGGTATATTAATGTAC 57.319 34.615 12.58 12.58 0.00 2.90
583 584 6.364568 ACGAAGGGGGTATATTAATGTACC 57.635 41.667 25.61 25.61 42.00 3.34
602 603 6.005198 TGTACCCTTTGTAATACCCAACTTG 58.995 40.000 0.00 0.00 0.00 3.16
603 604 4.412843 ACCCTTTGTAATACCCAACTTGG 58.587 43.478 0.12 0.12 37.25 3.61
698 710 2.954684 ATCAGAGTTTCCGCCGGCA 61.955 57.895 28.98 4.32 0.00 5.69
721 733 1.954146 GACAAAGACACGCGAGGCA 60.954 57.895 15.93 0.00 0.00 4.75
764 779 3.603965 ACTCCAACACCCATTTACCAA 57.396 42.857 0.00 0.00 0.00 3.67
774 789 4.698304 CACCCATTTACCAAACGACTACAT 59.302 41.667 0.00 0.00 0.00 2.29
780 795 6.730960 TTTACCAAACGACTACATTCCATC 57.269 37.500 0.00 0.00 0.00 3.51
915 955 2.604046 ACTATCCACGCCATCTTGTC 57.396 50.000 0.00 0.00 0.00 3.18
1020 1060 2.840753 GGGGGAGGTTGGTGCTGAA 61.841 63.158 0.00 0.00 0.00 3.02
1300 1399 0.967662 CATGGGCATGAACAACACCA 59.032 50.000 0.00 0.00 41.20 4.17
1473 1644 2.992689 TCGGTGAAGGCGCTGGTA 60.993 61.111 7.64 0.00 0.00 3.25
1892 2069 4.069232 CAAGCTGAGCGTCCCCGA 62.069 66.667 0.00 0.00 35.63 5.14
2024 2219 1.086696 CAAGCGGACAAATCATCGGT 58.913 50.000 0.00 0.00 34.77 4.69
2148 2346 1.511305 CGTGTACGGCCAGATGAGT 59.489 57.895 2.24 0.00 35.37 3.41
2658 2865 2.649034 GCCAAGGTGACGACGAGA 59.351 61.111 0.00 0.00 0.00 4.04
3087 3407 9.799106 CCAGGTCTATAATAAAGATTCACCAAT 57.201 33.333 0.00 0.00 0.00 3.16
3117 3437 9.268255 GCAAAACACCTTAAACATAACAAAAAC 57.732 29.630 0.00 0.00 0.00 2.43
3140 3460 0.541863 ATCGAGGTTCATGGACCACC 59.458 55.000 25.54 14.80 42.35 4.61
3143 3463 0.108138 GAGGTTCATGGACCACCGAG 60.108 60.000 25.54 0.00 42.35 4.63
3155 3475 2.842462 ACCGAGCCACCACTGTCA 60.842 61.111 0.00 0.00 0.00 3.58
3209 3529 0.108281 GAGTCGGCCTTACCTTGTCC 60.108 60.000 0.00 0.00 35.61 4.02
3279 3624 1.425412 GAGGCACGTTCGTAACATGT 58.575 50.000 0.00 0.00 0.00 3.21
3280 3625 1.389106 GAGGCACGTTCGTAACATGTC 59.611 52.381 0.00 0.00 27.60 3.06
3281 3626 1.141645 GGCACGTTCGTAACATGTCA 58.858 50.000 0.00 0.00 28.23 3.58
3282 3627 1.730064 GGCACGTTCGTAACATGTCAT 59.270 47.619 0.00 0.00 28.23 3.06
3283 3628 2.222729 GGCACGTTCGTAACATGTCATC 60.223 50.000 0.00 0.00 28.23 2.92
3284 3629 2.666508 GCACGTTCGTAACATGTCATCT 59.333 45.455 0.00 0.00 0.00 2.90
3285 3630 3.481951 GCACGTTCGTAACATGTCATCTG 60.482 47.826 0.00 0.00 0.00 2.90
3286 3631 3.060761 CACGTTCGTAACATGTCATCTGG 59.939 47.826 0.00 0.00 0.00 3.86
3287 3632 2.029244 CGTTCGTAACATGTCATCTGGC 59.971 50.000 0.00 0.00 0.00 4.85
3288 3633 2.309528 TCGTAACATGTCATCTGGCC 57.690 50.000 0.00 0.00 0.00 5.36
3289 3634 1.552792 TCGTAACATGTCATCTGGCCA 59.447 47.619 4.71 4.71 0.00 5.36
3290 3635 2.027653 TCGTAACATGTCATCTGGCCAA 60.028 45.455 7.01 0.00 0.00 4.52
3291 3636 2.945008 CGTAACATGTCATCTGGCCAAT 59.055 45.455 7.01 0.08 0.00 3.16
3292 3637 3.002656 CGTAACATGTCATCTGGCCAATC 59.997 47.826 7.01 0.00 0.00 2.67
3293 3638 2.812836 ACATGTCATCTGGCCAATCA 57.187 45.000 7.01 2.05 0.00 2.57
3294 3639 2.651455 ACATGTCATCTGGCCAATCAG 58.349 47.619 7.01 0.00 36.17 2.90
3295 3640 1.954382 CATGTCATCTGGCCAATCAGG 59.046 52.381 7.01 0.00 41.84 3.86
3296 3641 0.994247 TGTCATCTGGCCAATCAGGT 59.006 50.000 7.01 0.00 40.61 4.00
3297 3642 1.355381 TGTCATCTGGCCAATCAGGTT 59.645 47.619 7.01 0.00 40.61 3.50
3298 3643 2.575735 TGTCATCTGGCCAATCAGGTTA 59.424 45.455 7.01 0.00 40.61 2.85
3299 3644 3.202818 TGTCATCTGGCCAATCAGGTTAT 59.797 43.478 7.01 0.00 40.61 1.89
3300 3645 4.411869 TGTCATCTGGCCAATCAGGTTATA 59.588 41.667 7.01 0.00 40.61 0.98
3301 3646 5.104151 TGTCATCTGGCCAATCAGGTTATAA 60.104 40.000 7.01 0.00 40.61 0.98
3302 3647 5.827797 GTCATCTGGCCAATCAGGTTATAAA 59.172 40.000 7.01 0.00 40.61 1.40
3303 3648 6.016777 GTCATCTGGCCAATCAGGTTATAAAG 60.017 42.308 7.01 0.00 40.61 1.85
3308 3653 5.652014 TGGCCAATCAGGTTATAAAGAACTG 59.348 40.000 0.61 0.00 40.61 3.16
3515 3860 5.793026 TTTGGCAGAAAAATGTGTTGAAC 57.207 34.783 0.00 0.00 0.00 3.18
3600 3948 2.838202 TCAAGGACCTGGATCTGTTACC 59.162 50.000 0.00 0.00 0.00 2.85
3650 3998 6.092259 CCTTAAGAGCACTACACCAACATTAC 59.908 42.308 3.36 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.142381 GCTTAAGTACTTCCCCAAATGCTG 60.142 45.833 12.39 0.00 0.00 4.41
1 2 4.017126 GCTTAAGTACTTCCCCAAATGCT 58.983 43.478 12.39 0.00 0.00 3.79
3 4 5.253330 TGAGCTTAAGTACTTCCCCAAATG 58.747 41.667 12.39 0.00 0.00 2.32
4 5 5.250774 TCTGAGCTTAAGTACTTCCCCAAAT 59.749 40.000 12.39 0.00 0.00 2.32
5 6 4.595781 TCTGAGCTTAAGTACTTCCCCAAA 59.404 41.667 12.39 0.00 0.00 3.28
6 7 4.164981 TCTGAGCTTAAGTACTTCCCCAA 58.835 43.478 12.39 0.00 0.00 4.12
7 8 3.786553 TCTGAGCTTAAGTACTTCCCCA 58.213 45.455 12.39 3.98 0.00 4.96
8 9 4.020485 TGTTCTGAGCTTAAGTACTTCCCC 60.020 45.833 12.39 1.36 0.00 4.81
9 10 4.930405 GTGTTCTGAGCTTAAGTACTTCCC 59.070 45.833 12.39 1.74 0.00 3.97
10 11 4.930405 GGTGTTCTGAGCTTAAGTACTTCC 59.070 45.833 12.39 2.11 0.00 3.46
11 12 5.635700 CAGGTGTTCTGAGCTTAAGTACTTC 59.364 44.000 12.39 0.00 46.18 3.01
12 13 5.511545 CCAGGTGTTCTGAGCTTAAGTACTT 60.512 44.000 13.68 13.68 46.18 2.24
13 14 4.021016 CCAGGTGTTCTGAGCTTAAGTACT 60.021 45.833 4.02 0.00 46.18 2.73
14 15 4.021368 TCCAGGTGTTCTGAGCTTAAGTAC 60.021 45.833 4.02 0.00 46.18 2.73
15 16 4.157246 TCCAGGTGTTCTGAGCTTAAGTA 58.843 43.478 4.02 0.00 46.18 2.24
16 17 2.972713 TCCAGGTGTTCTGAGCTTAAGT 59.027 45.455 4.02 0.00 46.18 2.24
17 18 3.259374 TCTCCAGGTGTTCTGAGCTTAAG 59.741 47.826 0.00 0.00 46.18 1.85
18 19 3.239449 TCTCCAGGTGTTCTGAGCTTAA 58.761 45.455 0.00 0.00 46.18 1.85
19 20 2.889512 TCTCCAGGTGTTCTGAGCTTA 58.110 47.619 0.00 0.00 46.18 3.09
20 21 1.722034 TCTCCAGGTGTTCTGAGCTT 58.278 50.000 0.00 0.00 46.18 3.74
21 22 1.622811 CTTCTCCAGGTGTTCTGAGCT 59.377 52.381 0.00 0.00 46.18 4.09
22 23 1.620819 TCTTCTCCAGGTGTTCTGAGC 59.379 52.381 0.00 0.00 46.18 4.26
23 24 2.233431 CCTCTTCTCCAGGTGTTCTGAG 59.767 54.545 0.00 0.00 46.18 3.35
24 25 2.158310 TCCTCTTCTCCAGGTGTTCTGA 60.158 50.000 0.00 0.00 46.18 3.27
25 26 2.251818 TCCTCTTCTCCAGGTGTTCTG 58.748 52.381 0.00 0.00 43.00 3.02
26 27 2.704190 TCCTCTTCTCCAGGTGTTCT 57.296 50.000 0.00 0.00 32.20 3.01
27 28 2.159170 CGATCCTCTTCTCCAGGTGTTC 60.159 54.545 0.00 0.00 32.20 3.18
28 29 1.827969 CGATCCTCTTCTCCAGGTGTT 59.172 52.381 0.00 0.00 32.20 3.32
29 30 1.006043 TCGATCCTCTTCTCCAGGTGT 59.994 52.381 0.00 0.00 32.20 4.16
30 31 1.769026 TCGATCCTCTTCTCCAGGTG 58.231 55.000 0.00 0.00 32.20 4.00
31 32 2.024846 TCTTCGATCCTCTTCTCCAGGT 60.025 50.000 0.00 0.00 32.20 4.00
32 33 2.622942 CTCTTCGATCCTCTTCTCCAGG 59.377 54.545 0.00 0.00 0.00 4.45
33 34 3.550820 TCTCTTCGATCCTCTTCTCCAG 58.449 50.000 0.00 0.00 0.00 3.86
34 35 3.653835 TCTCTTCGATCCTCTTCTCCA 57.346 47.619 0.00 0.00 0.00 3.86
35 36 4.204012 TCTTCTCTTCGATCCTCTTCTCC 58.796 47.826 0.00 0.00 0.00 3.71
36 37 5.449999 GGTTCTTCTCTTCGATCCTCTTCTC 60.450 48.000 0.00 0.00 0.00 2.87
37 38 4.401202 GGTTCTTCTCTTCGATCCTCTTCT 59.599 45.833 0.00 0.00 0.00 2.85
38 39 4.401202 AGGTTCTTCTCTTCGATCCTCTTC 59.599 45.833 0.00 0.00 0.00 2.87
39 40 4.159506 CAGGTTCTTCTCTTCGATCCTCTT 59.840 45.833 0.00 0.00 29.20 2.85
40 41 3.699038 CAGGTTCTTCTCTTCGATCCTCT 59.301 47.826 0.00 0.00 29.20 3.69
41 42 3.181480 CCAGGTTCTTCTCTTCGATCCTC 60.181 52.174 0.00 0.00 29.20 3.71
42 43 2.763448 CCAGGTTCTTCTCTTCGATCCT 59.237 50.000 0.00 0.00 31.24 3.24
43 44 2.761208 TCCAGGTTCTTCTCTTCGATCC 59.239 50.000 0.00 0.00 0.00 3.36
44 45 3.732471 CGTCCAGGTTCTTCTCTTCGATC 60.732 52.174 0.00 0.00 0.00 3.69
45 46 2.164624 CGTCCAGGTTCTTCTCTTCGAT 59.835 50.000 0.00 0.00 0.00 3.59
46 47 1.540267 CGTCCAGGTTCTTCTCTTCGA 59.460 52.381 0.00 0.00 0.00 3.71
47 48 1.402984 CCGTCCAGGTTCTTCTCTTCG 60.403 57.143 0.00 0.00 34.51 3.79
48 49 1.673329 GCCGTCCAGGTTCTTCTCTTC 60.673 57.143 0.00 0.00 43.70 2.87
49 50 0.321996 GCCGTCCAGGTTCTTCTCTT 59.678 55.000 0.00 0.00 43.70 2.85
50 51 1.545706 GGCCGTCCAGGTTCTTCTCT 61.546 60.000 0.00 0.00 43.70 3.10
51 52 1.079057 GGCCGTCCAGGTTCTTCTC 60.079 63.158 0.00 0.00 43.70 2.87
52 53 1.415672 TTGGCCGTCCAGGTTCTTCT 61.416 55.000 0.00 0.00 44.53 2.85
53 54 0.536460 TTTGGCCGTCCAGGTTCTTC 60.536 55.000 0.00 0.00 44.53 2.87
54 55 0.822121 GTTTGGCCGTCCAGGTTCTT 60.822 55.000 0.00 0.00 44.53 2.52
55 56 1.228154 GTTTGGCCGTCCAGGTTCT 60.228 57.895 0.00 0.00 44.53 3.01
56 57 2.265904 GGTTTGGCCGTCCAGGTTC 61.266 63.158 0.00 0.00 44.53 3.62
57 58 2.203437 GGTTTGGCCGTCCAGGTT 60.203 61.111 0.00 0.00 44.53 3.50
58 59 4.280019 GGGTTTGGCCGTCCAGGT 62.280 66.667 11.75 0.00 44.53 4.00
62 63 4.295199 AAGGGGGTTTGGCCGTCC 62.295 66.667 0.00 0.00 38.44 4.79
63 64 2.675423 GAAGGGGGTTTGGCCGTC 60.675 66.667 0.00 0.00 38.44 4.79
64 65 4.295199 GGAAGGGGGTTTGGCCGT 62.295 66.667 0.00 0.00 38.44 5.68
65 66 3.523374 AAGGAAGGGGGTTTGGCCG 62.523 63.158 0.00 0.00 38.44 6.13
69 70 2.992847 AGGTAAAGGAAGGGGGTTTG 57.007 50.000 0.00 0.00 0.00 2.93
105 106 2.840203 ATTGGGAGCCGAGGGAGGAA 62.840 60.000 0.00 0.00 0.00 3.36
120 121 3.537580 CAAGCAATGAAATGGGGATTGG 58.462 45.455 0.00 0.00 0.00 3.16
132 133 2.585330 TGGTGAAGAAGCAAGCAATGA 58.415 42.857 0.00 0.00 32.00 2.57
153 154 2.158534 TGTGGCAAATCTGGGTACAACT 60.159 45.455 0.00 0.00 0.00 3.16
170 171 6.254157 GCTATGCAATTAACACTCAATTGTGG 59.746 38.462 11.89 6.13 42.67 4.17
184 185 4.363138 CTCGACTCACTGCTATGCAATTA 58.637 43.478 0.00 0.00 38.41 1.40
197 198 0.317938 AACTGTCACGCTCGACTCAC 60.318 55.000 0.00 0.00 36.82 3.51
245 246 5.453339 CGGAGGGAGTATTGCATAAAGAAGA 60.453 44.000 0.00 0.00 0.00 2.87
256 257 3.343941 TTTGGAACGGAGGGAGTATTG 57.656 47.619 0.00 0.00 0.00 1.90
257 258 4.270008 CATTTTGGAACGGAGGGAGTATT 58.730 43.478 0.00 0.00 0.00 1.89
258 259 3.886123 CATTTTGGAACGGAGGGAGTAT 58.114 45.455 0.00 0.00 0.00 2.12
259 260 2.617021 GCATTTTGGAACGGAGGGAGTA 60.617 50.000 0.00 0.00 0.00 2.59
261 262 0.811281 GCATTTTGGAACGGAGGGAG 59.189 55.000 0.00 0.00 0.00 4.30
262 263 0.111446 TGCATTTTGGAACGGAGGGA 59.889 50.000 0.00 0.00 0.00 4.20
263 264 0.965439 TTGCATTTTGGAACGGAGGG 59.035 50.000 0.00 0.00 0.00 4.30
264 265 1.613437 ACTTGCATTTTGGAACGGAGG 59.387 47.619 0.00 0.00 0.00 4.30
265 266 3.369546 AACTTGCATTTTGGAACGGAG 57.630 42.857 0.00 0.00 0.00 4.63
266 267 3.810310 AAACTTGCATTTTGGAACGGA 57.190 38.095 0.00 0.00 0.00 4.69
267 268 4.873768 AAAAACTTGCATTTTGGAACGG 57.126 36.364 0.00 0.00 32.12 4.44
268 269 6.695278 TCTCTAAAAACTTGCATTTTGGAACG 59.305 34.615 10.17 2.55 36.99 3.95
269 270 8.593492 ATCTCTAAAAACTTGCATTTTGGAAC 57.407 30.769 10.17 0.00 36.99 3.62
270 271 9.260002 GAATCTCTAAAAACTTGCATTTTGGAA 57.740 29.630 10.17 4.28 36.99 3.53
271 272 7.872483 GGAATCTCTAAAAACTTGCATTTTGGA 59.128 33.333 9.00 9.00 35.67 3.53
272 273 7.656948 TGGAATCTCTAAAAACTTGCATTTTGG 59.343 33.333 6.74 4.34 32.12 3.28
273 274 8.592105 TGGAATCTCTAAAAACTTGCATTTTG 57.408 30.769 6.74 0.00 32.12 2.44
274 275 9.783081 ATTGGAATCTCTAAAAACTTGCATTTT 57.217 25.926 2.37 2.37 33.13 1.82
310 311 9.399797 TGTAGATTCACTCATTTTGCTTGATAT 57.600 29.630 0.00 0.00 0.00 1.63
311 312 8.668353 GTGTAGATTCACTCATTTTGCTTGATA 58.332 33.333 0.00 0.00 35.68 2.15
312 313 7.392673 AGTGTAGATTCACTCATTTTGCTTGAT 59.607 33.333 0.00 0.00 44.07 2.57
313 314 6.712095 AGTGTAGATTCACTCATTTTGCTTGA 59.288 34.615 0.00 0.00 44.07 3.02
314 315 6.906659 AGTGTAGATTCACTCATTTTGCTTG 58.093 36.000 0.00 0.00 44.07 4.01
388 389 9.058174 GCCCCTCTTTCTAAATATAAGTCTTTC 57.942 37.037 0.00 0.00 0.00 2.62
389 390 7.715686 CGCCCCTCTTTCTAAATATAAGTCTTT 59.284 37.037 0.00 0.00 0.00 2.52
390 391 7.070821 TCGCCCCTCTTTCTAAATATAAGTCTT 59.929 37.037 0.00 0.00 0.00 3.01
391 392 6.553852 TCGCCCCTCTTTCTAAATATAAGTCT 59.446 38.462 0.00 0.00 0.00 3.24
392 393 6.756221 TCGCCCCTCTTTCTAAATATAAGTC 58.244 40.000 0.00 0.00 0.00 3.01
393 394 6.742559 TCGCCCCTCTTTCTAAATATAAGT 57.257 37.500 0.00 0.00 0.00 2.24
394 395 7.332182 GTCATCGCCCCTCTTTCTAAATATAAG 59.668 40.741 0.00 0.00 0.00 1.73
395 396 7.159372 GTCATCGCCCCTCTTTCTAAATATAA 58.841 38.462 0.00 0.00 0.00 0.98
396 397 6.269077 TGTCATCGCCCCTCTTTCTAAATATA 59.731 38.462 0.00 0.00 0.00 0.86
397 398 5.071788 TGTCATCGCCCCTCTTTCTAAATAT 59.928 40.000 0.00 0.00 0.00 1.28
398 399 4.407621 TGTCATCGCCCCTCTTTCTAAATA 59.592 41.667 0.00 0.00 0.00 1.40
399 400 3.199946 TGTCATCGCCCCTCTTTCTAAAT 59.800 43.478 0.00 0.00 0.00 1.40
400 401 2.569853 TGTCATCGCCCCTCTTTCTAAA 59.430 45.455 0.00 0.00 0.00 1.85
401 402 2.168521 CTGTCATCGCCCCTCTTTCTAA 59.831 50.000 0.00 0.00 0.00 2.10
402 403 1.757118 CTGTCATCGCCCCTCTTTCTA 59.243 52.381 0.00 0.00 0.00 2.10
403 404 0.539051 CTGTCATCGCCCCTCTTTCT 59.461 55.000 0.00 0.00 0.00 2.52
404 405 1.092345 GCTGTCATCGCCCCTCTTTC 61.092 60.000 0.00 0.00 0.00 2.62
405 406 1.078143 GCTGTCATCGCCCCTCTTT 60.078 57.895 0.00 0.00 0.00 2.52
406 407 2.586792 GCTGTCATCGCCCCTCTT 59.413 61.111 0.00 0.00 0.00 2.85
407 408 3.842923 CGCTGTCATCGCCCCTCT 61.843 66.667 0.00 0.00 0.00 3.69
408 409 4.899239 CCGCTGTCATCGCCCCTC 62.899 72.222 0.00 0.00 0.00 4.30
416 417 4.704833 AAGGCACGCCGCTGTCAT 62.705 61.111 1.61 0.00 41.91 3.06
431 432 3.184683 GCACTGAGCGAGCCGAAG 61.185 66.667 0.00 0.00 0.00 3.79
440 441 1.341606 GACGACTACAAGCACTGAGC 58.658 55.000 0.00 0.00 46.19 4.26
441 442 1.607713 CGACGACTACAAGCACTGAG 58.392 55.000 0.00 0.00 0.00 3.35
442 443 0.386858 GCGACGACTACAAGCACTGA 60.387 55.000 0.00 0.00 0.00 3.41
443 444 0.387367 AGCGACGACTACAAGCACTG 60.387 55.000 0.00 0.00 0.00 3.66
444 445 1.130749 CTAGCGACGACTACAAGCACT 59.869 52.381 0.00 0.00 0.00 4.40
445 446 1.536149 CTAGCGACGACTACAAGCAC 58.464 55.000 0.00 0.00 0.00 4.40
446 447 0.450583 CCTAGCGACGACTACAAGCA 59.549 55.000 0.00 0.00 0.00 3.91
447 448 0.450983 ACCTAGCGACGACTACAAGC 59.549 55.000 0.00 0.00 0.00 4.01
448 449 1.202154 CCACCTAGCGACGACTACAAG 60.202 57.143 0.00 0.00 0.00 3.16
449 450 0.806868 CCACCTAGCGACGACTACAA 59.193 55.000 0.00 0.00 0.00 2.41
450 451 0.321919 ACCACCTAGCGACGACTACA 60.322 55.000 0.00 0.00 0.00 2.74
451 452 0.376502 GACCACCTAGCGACGACTAC 59.623 60.000 0.00 0.00 0.00 2.73
452 453 0.251354 AGACCACCTAGCGACGACTA 59.749 55.000 0.00 0.00 0.00 2.59
453 454 0.251354 TAGACCACCTAGCGACGACT 59.749 55.000 0.00 0.00 0.00 4.18
454 455 0.376502 GTAGACCACCTAGCGACGAC 59.623 60.000 0.00 0.00 0.00 4.34
455 456 1.086067 CGTAGACCACCTAGCGACGA 61.086 60.000 0.00 0.00 0.00 4.20
456 457 1.351012 CGTAGACCACCTAGCGACG 59.649 63.158 0.00 0.00 0.00 5.12
457 458 0.745845 TCCGTAGACCACCTAGCGAC 60.746 60.000 0.00 0.00 0.00 5.19
458 459 0.745845 GTCCGTAGACCACCTAGCGA 60.746 60.000 0.00 0.00 37.00 4.93
459 460 1.726265 GTCCGTAGACCACCTAGCG 59.274 63.158 0.00 0.00 37.00 4.26
468 469 4.667519 AATTACATCCAGGTCCGTAGAC 57.332 45.455 0.00 0.00 42.73 2.59
469 470 5.687166 AAAATTACATCCAGGTCCGTAGA 57.313 39.130 0.00 0.00 0.00 2.59
470 471 8.446599 AATAAAAATTACATCCAGGTCCGTAG 57.553 34.615 0.00 0.00 0.00 3.51
472 473 8.990163 ATAATAAAAATTACATCCAGGTCCGT 57.010 30.769 0.00 0.00 0.00 4.69
492 493 8.293867 GCAGTACAACAAACACCAGAAATAATA 58.706 33.333 0.00 0.00 0.00 0.98
493 494 7.145323 GCAGTACAACAAACACCAGAAATAAT 58.855 34.615 0.00 0.00 0.00 1.28
494 495 6.460399 GGCAGTACAACAAACACCAGAAATAA 60.460 38.462 0.00 0.00 0.00 1.40
495 496 5.009210 GGCAGTACAACAAACACCAGAAATA 59.991 40.000 0.00 0.00 0.00 1.40
496 497 4.202111 GGCAGTACAACAAACACCAGAAAT 60.202 41.667 0.00 0.00 0.00 2.17
497 498 3.129638 GGCAGTACAACAAACACCAGAAA 59.870 43.478 0.00 0.00 0.00 2.52
498 499 2.685897 GGCAGTACAACAAACACCAGAA 59.314 45.455 0.00 0.00 0.00 3.02
499 500 2.294074 GGCAGTACAACAAACACCAGA 58.706 47.619 0.00 0.00 0.00 3.86
500 501 2.020720 TGGCAGTACAACAAACACCAG 58.979 47.619 0.00 0.00 0.00 4.00
501 502 2.130272 TGGCAGTACAACAAACACCA 57.870 45.000 0.00 0.00 0.00 4.17
502 503 2.621055 TCATGGCAGTACAACAAACACC 59.379 45.455 0.00 0.00 0.00 4.16
503 504 3.980646 TCATGGCAGTACAACAAACAC 57.019 42.857 0.00 0.00 0.00 3.32
504 505 4.582240 TCAATCATGGCAGTACAACAAACA 59.418 37.500 0.00 0.00 0.00 2.83
505 506 5.119931 TCAATCATGGCAGTACAACAAAC 57.880 39.130 0.00 0.00 0.00 2.93
506 507 5.534278 TCTTCAATCATGGCAGTACAACAAA 59.466 36.000 0.00 0.00 0.00 2.83
507 508 5.069318 TCTTCAATCATGGCAGTACAACAA 58.931 37.500 0.00 0.00 0.00 2.83
508 509 4.650734 TCTTCAATCATGGCAGTACAACA 58.349 39.130 0.00 0.00 0.00 3.33
509 510 5.355071 TCATCTTCAATCATGGCAGTACAAC 59.645 40.000 0.00 0.00 0.00 3.32
510 511 5.499313 TCATCTTCAATCATGGCAGTACAA 58.501 37.500 0.00 0.00 0.00 2.41
511 512 5.101648 TCATCTTCAATCATGGCAGTACA 57.898 39.130 0.00 0.00 0.00 2.90
512 513 6.630444 ATTCATCTTCAATCATGGCAGTAC 57.370 37.500 0.00 0.00 0.00 2.73
513 514 6.938596 CCTATTCATCTTCAATCATGGCAGTA 59.061 38.462 0.00 0.00 0.00 2.74
514 515 5.768662 CCTATTCATCTTCAATCATGGCAGT 59.231 40.000 0.00 0.00 0.00 4.40
515 516 5.768662 ACCTATTCATCTTCAATCATGGCAG 59.231 40.000 0.00 0.00 0.00 4.85
516 517 5.698104 ACCTATTCATCTTCAATCATGGCA 58.302 37.500 0.00 0.00 0.00 4.92
517 518 5.106791 CGACCTATTCATCTTCAATCATGGC 60.107 44.000 0.00 0.00 0.00 4.40
518 519 6.226052 TCGACCTATTCATCTTCAATCATGG 58.774 40.000 0.00 0.00 0.00 3.66
519 520 7.719778 TTCGACCTATTCATCTTCAATCATG 57.280 36.000 0.00 0.00 0.00 3.07
520 521 7.989741 ACTTTCGACCTATTCATCTTCAATCAT 59.010 33.333 0.00 0.00 0.00 2.45
521 522 7.331026 ACTTTCGACCTATTCATCTTCAATCA 58.669 34.615 0.00 0.00 0.00 2.57
522 523 7.778470 ACTTTCGACCTATTCATCTTCAATC 57.222 36.000 0.00 0.00 0.00 2.67
523 524 8.567285 AAACTTTCGACCTATTCATCTTCAAT 57.433 30.769 0.00 0.00 0.00 2.57
524 525 7.979444 AAACTTTCGACCTATTCATCTTCAA 57.021 32.000 0.00 0.00 0.00 2.69
525 526 7.659799 TGAAAACTTTCGACCTATTCATCTTCA 59.340 33.333 0.00 0.00 40.01 3.02
526 527 8.029642 TGAAAACTTTCGACCTATTCATCTTC 57.970 34.615 0.00 0.00 40.01 2.87
527 528 7.979444 TGAAAACTTTCGACCTATTCATCTT 57.021 32.000 0.00 0.00 40.01 2.40
528 529 7.979444 TTGAAAACTTTCGACCTATTCATCT 57.021 32.000 0.00 0.00 40.01 2.90
529 530 9.458374 TTTTTGAAAACTTTCGACCTATTCATC 57.542 29.630 0.00 0.00 40.01 2.92
556 557 9.123902 GTACATTAATATACCCCCTTCGTTTTT 57.876 33.333 0.00 0.00 0.00 1.94
557 558 7.720957 GGTACATTAATATACCCCCTTCGTTTT 59.279 37.037 11.31 0.00 35.71 2.43
558 559 7.226441 GGTACATTAATATACCCCCTTCGTTT 58.774 38.462 11.31 0.00 35.71 3.60
559 560 6.772605 GGTACATTAATATACCCCCTTCGTT 58.227 40.000 11.31 0.00 35.71 3.85
560 561 6.364568 GGTACATTAATATACCCCCTTCGT 57.635 41.667 11.31 0.00 35.71 3.85
573 574 9.192642 GTTGGGTATTACAAAGGGTACATTAAT 57.807 33.333 0.00 0.00 0.00 1.40
574 575 8.392479 AGTTGGGTATTACAAAGGGTACATTAA 58.608 33.333 0.00 0.00 0.00 1.40
575 576 7.931046 AGTTGGGTATTACAAAGGGTACATTA 58.069 34.615 0.00 0.00 0.00 1.90
576 577 6.796648 AGTTGGGTATTACAAAGGGTACATT 58.203 36.000 0.00 0.00 0.00 2.71
577 578 6.397217 AGTTGGGTATTACAAAGGGTACAT 57.603 37.500 0.00 0.00 0.00 2.29
578 579 5.846528 AGTTGGGTATTACAAAGGGTACA 57.153 39.130 0.00 0.00 0.00 2.90
579 580 5.416639 CCAAGTTGGGTATTACAAAGGGTAC 59.583 44.000 14.64 0.00 32.67 3.34
580 581 5.312708 TCCAAGTTGGGTATTACAAAGGGTA 59.687 40.000 21.85 0.00 38.32 3.69
581 582 4.106663 TCCAAGTTGGGTATTACAAAGGGT 59.893 41.667 21.85 0.00 38.32 4.34
582 583 4.668636 TCCAAGTTGGGTATTACAAAGGG 58.331 43.478 21.85 0.00 38.32 3.95
583 584 6.187682 AGATCCAAGTTGGGTATTACAAAGG 58.812 40.000 21.85 0.00 38.32 3.11
584 585 8.801882 TTAGATCCAAGTTGGGTATTACAAAG 57.198 34.615 21.85 0.00 38.32 2.77
585 586 9.238368 CTTTAGATCCAAGTTGGGTATTACAAA 57.762 33.333 21.85 8.77 38.32 2.83
586 587 7.832187 CCTTTAGATCCAAGTTGGGTATTACAA 59.168 37.037 21.85 0.59 38.32 2.41
587 588 7.183112 TCCTTTAGATCCAAGTTGGGTATTACA 59.817 37.037 21.85 0.54 38.32 2.41
591 592 6.652205 TTCCTTTAGATCCAAGTTGGGTAT 57.348 37.500 21.85 14.97 38.32 2.73
602 603 7.696992 TGTGGTGTTTATTTCCTTTAGATCC 57.303 36.000 0.00 0.00 0.00 3.36
603 604 8.739972 ACATGTGGTGTTTATTTCCTTTAGATC 58.260 33.333 0.00 0.00 38.01 2.75
698 710 2.061773 CTCGCGTGTCTTTGTCAATCT 58.938 47.619 5.77 0.00 0.00 2.40
1020 1060 2.224475 GGTGTAGATCATGCCTGCAGAT 60.224 50.000 17.39 0.00 0.00 2.90
2148 2346 1.002659 CCCTGGAACACGAACATGGTA 59.997 52.381 0.00 0.00 0.00 3.25
2658 2865 0.402861 TCCACCCTTCCTTTCCACCT 60.403 55.000 0.00 0.00 0.00 4.00
2868 3184 0.242825 CTACTTCGTTGGCGTCCTGA 59.757 55.000 0.00 0.00 39.49 3.86
3049 3369 0.912486 AGACCTGGATCCTTTTCCGG 59.088 55.000 14.23 0.00 41.19 5.14
3063 3383 9.799106 CCATTGGTGAATCTTTATTATAGACCT 57.201 33.333 0.00 0.00 0.00 3.85
3117 3437 2.430694 TGGTCCATGAACCTCGATGTAG 59.569 50.000 1.64 0.00 40.20 2.74
3140 3460 2.357517 GGTGACAGTGGTGGCTCG 60.358 66.667 0.00 0.00 30.05 5.03
3155 3475 1.935327 GAGAGTAGCAAGTCGGCGGT 61.935 60.000 7.21 0.00 39.27 5.68
3209 3529 6.148315 TGCATGAAGACTTTCTAACTGTCATG 59.852 38.462 0.00 9.16 42.46 3.07
3279 3624 5.645056 TTATAACCTGATTGGCCAGATGA 57.355 39.130 5.11 0.00 40.22 2.92
3280 3625 6.064060 TCTTTATAACCTGATTGGCCAGATG 58.936 40.000 5.11 0.00 40.22 2.90
3281 3626 6.266131 TCTTTATAACCTGATTGGCCAGAT 57.734 37.500 5.11 2.42 40.22 2.90
3282 3627 5.708736 TCTTTATAACCTGATTGGCCAGA 57.291 39.130 5.11 0.00 40.22 3.86
3283 3628 5.888161 AGTTCTTTATAACCTGATTGGCCAG 59.112 40.000 5.11 0.00 40.22 4.85
3284 3629 5.652014 CAGTTCTTTATAACCTGATTGGCCA 59.348 40.000 0.00 0.00 40.22 5.36
3285 3630 5.652452 ACAGTTCTTTATAACCTGATTGGCC 59.348 40.000 0.00 0.00 40.22 5.36
3286 3631 6.374333 TCACAGTTCTTTATAACCTGATTGGC 59.626 38.462 7.33 0.00 40.22 4.52
3287 3632 7.390440 TGTCACAGTTCTTTATAACCTGATTGG 59.610 37.037 7.33 0.00 42.93 3.16
3288 3633 8.322906 TGTCACAGTTCTTTATAACCTGATTG 57.677 34.615 7.33 2.50 0.00 2.67
3289 3634 8.950210 CATGTCACAGTTCTTTATAACCTGATT 58.050 33.333 7.33 0.00 0.00 2.57
3290 3635 8.103305 ACATGTCACAGTTCTTTATAACCTGAT 58.897 33.333 0.00 0.00 0.00 2.90
3291 3636 7.450074 ACATGTCACAGTTCTTTATAACCTGA 58.550 34.615 0.00 0.00 0.00 3.86
3292 3637 7.672983 ACATGTCACAGTTCTTTATAACCTG 57.327 36.000 0.00 0.00 0.00 4.00
3293 3638 8.691661 AAACATGTCACAGTTCTTTATAACCT 57.308 30.769 0.00 0.00 0.00 3.50
3294 3639 8.564574 TGAAACATGTCACAGTTCTTTATAACC 58.435 33.333 0.00 0.00 0.00 2.85
3295 3640 9.599322 CTGAAACATGTCACAGTTCTTTATAAC 57.401 33.333 18.20 0.00 0.00 1.89
3296 3641 8.289618 GCTGAAACATGTCACAGTTCTTTATAA 58.710 33.333 23.53 0.00 33.57 0.98
3297 3642 7.360017 CGCTGAAACATGTCACAGTTCTTTATA 60.360 37.037 23.53 1.10 33.57 0.98
3298 3643 6.566564 CGCTGAAACATGTCACAGTTCTTTAT 60.567 38.462 23.53 0.00 33.57 1.40
3299 3644 5.277297 CGCTGAAACATGTCACAGTTCTTTA 60.277 40.000 23.53 1.91 33.57 1.85
3300 3645 4.496341 CGCTGAAACATGTCACAGTTCTTT 60.496 41.667 23.53 4.23 33.57 2.52
3301 3646 3.002656 CGCTGAAACATGTCACAGTTCTT 59.997 43.478 23.53 4.85 33.57 2.52
3302 3647 2.545526 CGCTGAAACATGTCACAGTTCT 59.454 45.455 23.53 0.00 33.57 3.01
3303 3648 2.287915 ACGCTGAAACATGTCACAGTTC 59.712 45.455 23.53 14.25 33.57 3.01
3308 3653 0.859232 ACGACGCTGAAACATGTCAC 59.141 50.000 0.00 0.00 0.00 3.67
3490 3835 7.224557 AGTTCAACACATTTTTCTGCCAAATAC 59.775 33.333 0.00 0.00 0.00 1.89
3543 3888 7.596494 ACGTGAATGAATGTTCATGATTTTCT 58.404 30.769 13.89 0.00 46.60 2.52
3600 3948 7.179410 GTGTTTTGCACTTTTGGTTAATCTTG 58.821 34.615 0.00 0.00 44.41 3.02
3731 4079 6.403866 TTGGCAATTTGAAACATGTAGAGT 57.596 33.333 0.00 0.00 0.00 3.24
3732 4080 6.700960 TGTTTGGCAATTTGAAACATGTAGAG 59.299 34.615 0.00 0.00 35.26 2.43
3859 4229 8.967664 ATTTGCTACATTTGGCATTTATGAAT 57.032 26.923 10.52 0.00 38.30 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.