Multiple sequence alignment - TraesCS3D01G056500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G056500 chr3D 100.000 5156 0 0 1 5156 23665013 23670168 0.000000e+00 9522.0
1 TraesCS3D01G056500 chr3D 80.791 354 41 18 3404 3732 23675783 23676134 8.570000e-63 252.0
2 TraesCS3D01G056500 chr3D 79.798 297 29 11 4751 5025 24200008 24200295 2.450000e-43 187.0
3 TraesCS3D01G056500 chr3D 84.706 170 20 5 3801 3968 23676154 23676319 1.150000e-36 165.0
4 TraesCS3D01G056500 chr3D 91.667 108 8 1 4052 4159 23676540 23676646 1.160000e-31 148.0
5 TraesCS3D01G056500 chr3A 90.942 4096 232 57 767 4814 32639362 32643366 0.000000e+00 5380.0
6 TraesCS3D01G056500 chr3A 91.391 3775 211 50 1066 4814 32703419 32707105 0.000000e+00 5066.0
7 TraesCS3D01G056500 chr3A 88.079 302 10 9 767 1048 32702955 32703250 8.270000e-88 335.0
8 TraesCS3D01G056500 chr3A 80.737 353 42 19 3404 3732 32649657 32650007 8.570000e-63 252.0
9 TraesCS3D01G056500 chr3A 80.737 353 42 19 3404 3732 32717392 32717742 8.570000e-63 252.0
10 TraesCS3D01G056500 chr3A 79.603 353 46 18 3404 3732 32864000 32864350 4.020000e-56 230.0
11 TraesCS3D01G056500 chr3A 79.494 356 44 20 3404 3732 32827817 32828170 5.190000e-55 226.0
12 TraesCS3D01G056500 chr3A 85.965 171 20 4 3801 3968 32864370 32864539 4.100000e-41 180.0
13 TraesCS3D01G056500 chr3A 84.706 170 20 5 3801 3968 32650027 32650192 1.150000e-36 165.0
14 TraesCS3D01G056500 chr3A 84.706 170 20 5 3801 3968 32717762 32717927 1.150000e-36 165.0
15 TraesCS3D01G056500 chr3A 84.118 170 21 5 3801 3968 32729894 32730059 5.340000e-35 159.0
16 TraesCS3D01G056500 chr3A 91.667 108 8 1 4052 4159 32650413 32650519 1.160000e-31 148.0
17 TraesCS3D01G056500 chr3A 91.667 108 8 1 4052 4159 32718148 32718254 1.160000e-31 148.0
18 TraesCS3D01G056500 chr3A 91.667 108 8 1 4052 4159 32730280 32730386 1.160000e-31 148.0
19 TraesCS3D01G056500 chr3A 90.741 108 9 1 4052 4159 32864759 32864865 5.380000e-30 143.0
20 TraesCS3D01G056500 chr3A 88.034 117 14 0 236 352 629645559 629645675 6.960000e-29 139.0
21 TraesCS3D01G056500 chr3A 84.956 113 16 1 68 179 550548053 550548165 4.220000e-21 113.0
22 TraesCS3D01G056500 chr3B 93.325 2442 129 18 2120 4550 42157641 42155223 0.000000e+00 3576.0
23 TraesCS3D01G056500 chr3B 87.478 1126 87 23 977 2075 42158740 42157642 0.000000e+00 1249.0
24 TraesCS3D01G056500 chr3B 84.838 554 37 13 4623 5156 42155225 42154699 9.900000e-142 514.0
25 TraesCS3D01G056500 chr3B 90.698 258 10 7 737 981 42159086 42158830 1.070000e-86 331.0
26 TraesCS3D01G056500 chr3B 78.293 410 73 12 69 471 823134016 823133616 3.080000e-62 250.0
27 TraesCS3D01G056500 chr3B 89.071 183 19 1 3550 3732 42144854 42144673 5.190000e-55 226.0
28 TraesCS3D01G056500 chr3B 81.544 298 24 9 4750 5025 506120654 506120366 3.130000e-52 217.0
29 TraesCS3D01G056500 chr3B 79.545 308 32 9 4740 5025 104491626 104491328 1.890000e-44 191.0
30 TraesCS3D01G056500 chr3B 84.706 170 20 5 3801 3968 42144653 42144488 1.150000e-36 165.0
31 TraesCS3D01G056500 chr3B 93.519 108 7 0 4052 4159 42144267 42144160 1.490000e-35 161.0
32 TraesCS3D01G056500 chrUn 83.984 1255 92 40 767 1983 294208867 294207684 0.000000e+00 1103.0
33 TraesCS3D01G056500 chrUn 83.786 1252 90 44 772 1983 402598218 402599396 0.000000e+00 1083.0
34 TraesCS3D01G056500 chrUn 83.717 1259 88 42 767 1983 251918060 251919243 0.000000e+00 1081.0
35 TraesCS3D01G056500 chrUn 83.717 1259 88 42 767 1983 293548871 293550054 0.000000e+00 1081.0
36 TraesCS3D01G056500 chrUn 83.717 1259 88 41 767 1983 366539685 366538502 0.000000e+00 1081.0
37 TraesCS3D01G056500 chrUn 83.320 1259 100 50 767 1983 293551477 293552667 0.000000e+00 1079.0
38 TraesCS3D01G056500 chrUn 83.719 1253 89 43 772 1983 251052048 251053226 0.000000e+00 1077.0
39 TraesCS3D01G056500 chrUn 83.638 1259 89 41 767 1983 327406834 327405651 0.000000e+00 1075.0
40 TraesCS3D01G056500 chrUn 83.584 1261 88 42 767 1983 327373771 327372586 0.000000e+00 1072.0
41 TraesCS3D01G056500 chrUn 83.320 1253 94 50 772 1983 251043516 251044694 0.000000e+00 1050.0
42 TraesCS3D01G056500 chrUn 83.254 1254 93 43 772 1983 251915468 251916646 0.000000e+00 1044.0
43 TraesCS3D01G056500 chrUn 83.247 776 57 24 1221 1983 368164562 368163847 0.000000e+00 645.0
44 TraesCS3D01G056500 chrUn 83.247 776 57 24 1221 1983 368217234 368216519 0.000000e+00 645.0
45 TraesCS3D01G056500 chrUn 84.858 634 37 10 1359 1983 251922872 251923455 7.440000e-163 584.0
46 TraesCS3D01G056500 chrUn 88.276 435 28 3 1550 1983 392553358 392553770 2.770000e-137 499.0
47 TraesCS3D01G056500 chrUn 93.069 202 9 1 767 963 353716481 353716682 1.820000e-74 291.0
48 TraesCS3D01G056500 chr1A 86.608 911 93 19 1617 2504 369265568 369266472 0.000000e+00 979.0
49 TraesCS3D01G056500 chr1A 79.137 695 88 27 818 1473 504890867 504890191 1.330000e-115 427.0
50 TraesCS3D01G056500 chr1A 82.669 502 63 14 977 1473 50110642 50111124 1.720000e-114 424.0
51 TraesCS3D01G056500 chr1A 82.306 503 66 16 977 1473 369265036 369265521 1.030000e-111 414.0
52 TraesCS3D01G056500 chr1A 95.302 149 7 0 823 971 369264849 369264997 2.400000e-58 237.0
53 TraesCS3D01G056500 chr1A 92.857 154 11 0 818 971 88798542 88798389 1.870000e-54 224.0
54 TraesCS3D01G056500 chr1A 92.617 149 11 0 823 971 50270242 50270390 1.120000e-51 215.0
55 TraesCS3D01G056500 chr1A 92.617 149 11 0 823 971 50295346 50295494 1.120000e-51 215.0
56 TraesCS3D01G056500 chr1A 79.577 284 21 14 4765 5025 92693206 92692937 8.880000e-38 169.0
57 TraesCS3D01G056500 chr1A 92.308 39 3 0 5024 5062 580966441 580966403 7.210000e-04 56.5
58 TraesCS3D01G056500 chr6D 87.573 861 79 19 1612 2451 234437373 234438226 0.000000e+00 972.0
59 TraesCS3D01G056500 chr6D 81.151 695 76 21 818 1473 234436655 234437333 1.660000e-139 507.0
60 TraesCS3D01G056500 chr2D 87.326 789 72 18 1727 2494 530353414 530354195 0.000000e+00 878.0
61 TraesCS3D01G056500 chr2D 82.873 181 20 4 4847 5025 109906148 109906319 8.940000e-33 152.0
62 TraesCS3D01G056500 chr2D 89.091 110 10 2 2491 2599 362867973 362868081 9.010000e-28 135.0
63 TraesCS3D01G056500 chr2A 87.056 788 76 18 1728 2494 685530622 685531404 0.000000e+00 867.0
64 TraesCS3D01G056500 chr7A 87.285 755 68 18 1773 2505 616255512 616256260 0.000000e+00 837.0
65 TraesCS3D01G056500 chr5A 86.825 759 70 19 1773 2508 564380929 564380178 0.000000e+00 821.0
66 TraesCS3D01G056500 chr5A 82.724 301 21 10 4747 5025 364586321 364586612 6.670000e-59 239.0
67 TraesCS3D01G056500 chr5A 96.552 116 3 1 2491 2605 407937711 407937826 1.890000e-44 191.0
68 TraesCS3D01G056500 chr4A 86.676 743 73 16 1773 2494 24454129 24454866 0.000000e+00 800.0
69 TraesCS3D01G056500 chr4A 81.569 510 67 13 977 1473 730171889 730172384 3.740000e-106 396.0
70 TraesCS3D01G056500 chr4A 77.935 707 90 33 818 1473 339481629 339482320 1.050000e-101 381.0
71 TraesCS3D01G056500 chr4A 82.508 303 22 10 4745 5025 522458468 522458175 2.400000e-58 237.0
72 TraesCS3D01G056500 chr4A 79.605 304 31 11 4743 5025 354373065 354372772 6.820000e-44 189.0
73 TraesCS3D01G056500 chr4A 80.400 250 25 7 4750 4977 704071493 704071246 8.880000e-38 169.0
74 TraesCS3D01G056500 chr4A 76.959 217 46 4 268 482 477047420 477047634 2.520000e-23 121.0
75 TraesCS3D01G056500 chr7D 84.181 354 36 13 978 1327 52377253 52377590 4.980000e-85 326.0
76 TraesCS3D01G056500 chr7D 94.156 154 9 0 818 971 52377060 52377213 8.630000e-58 235.0
77 TraesCS3D01G056500 chr5D 76.333 600 95 28 67 647 458730513 458729942 1.410000e-70 278.0
78 TraesCS3D01G056500 chr5D 76.301 346 37 15 4751 5062 39101449 39101115 5.380000e-30 143.0
79 TraesCS3D01G056500 chr5D 89.091 110 10 2 2491 2599 419872280 419872388 9.010000e-28 135.0
80 TraesCS3D01G056500 chr5D 74.026 385 76 19 121 490 543896381 543896756 9.010000e-28 135.0
81 TraesCS3D01G056500 chr4D 74.596 681 122 36 69 703 62306925 62307600 8.570000e-63 252.0
82 TraesCS3D01G056500 chr4D 89.091 110 10 2 2491 2599 421424213 421424105 9.010000e-28 135.0
83 TraesCS3D01G056500 chr4D 74.299 214 50 4 258 468 418587325 418587536 9.200000e-13 86.1
84 TraesCS3D01G056500 chr6B 81.000 300 25 12 4748 5025 421734142 421734431 5.230000e-50 209.0
85 TraesCS3D01G056500 chr6B 84.677 124 10 3 4902 5025 36820410 36820296 1.170000e-21 115.0
86 TraesCS3D01G056500 chr6B 93.023 43 2 1 140 182 137371393 137371352 1.550000e-05 62.1
87 TraesCS3D01G056500 chr7B 80.317 315 28 13 4734 5025 474470801 474471104 1.880000e-49 207.0
88 TraesCS3D01G056500 chr7B 80.632 253 23 9 4749 4977 250369306 250369056 6.860000e-39 172.0
89 TraesCS3D01G056500 chr7B 86.667 120 14 2 2491 2608 740536617 740536736 1.160000e-26 132.0
90 TraesCS3D01G056500 chr1D 79.866 298 29 6 4750 5025 26225401 26225113 6.820000e-44 189.0
91 TraesCS3D01G056500 chr1D 81.124 249 20 12 4750 4977 348979565 348979807 1.910000e-39 174.0
92 TraesCS3D01G056500 chr1D 89.091 110 10 2 2491 2599 265878672 265878564 9.010000e-28 135.0
93 TraesCS3D01G056500 chr2B 78.846 312 33 10 4737 5025 228704968 228704667 4.100000e-41 180.0
94 TraesCS3D01G056500 chr2B 77.528 178 34 4 318 490 254634621 254634445 9.130000e-18 102.0
95 TraesCS3D01G056500 chr1B 77.874 348 34 14 4749 5063 435294622 435294959 5.310000e-40 176.0
96 TraesCS3D01G056500 chr1B 79.920 249 29 5 4750 4977 348422802 348422554 4.130000e-36 163.0
97 TraesCS3D01G056500 chr1B 87.705 122 11 4 2491 2610 589055516 589055397 6.960000e-29 139.0
98 TraesCS3D01G056500 chr1B 87.288 118 10 5 2486 2601 227543897 227544011 4.190000e-26 130.0
99 TraesCS3D01G056500 chr1B 80.392 102 12 4 270 371 557097255 557097162 2.580000e-08 71.3
100 TraesCS3D01G056500 chr4B 88.496 113 9 4 2491 2600 583994596 583994485 3.240000e-27 134.0
101 TraesCS3D01G056500 chr4B 78.862 123 19 5 81 198 134390001 134389881 5.540000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G056500 chr3D 23665013 23670168 5155 False 9522.000000 9522 100.00000 1 5156 1 chr3D.!!$F1 5155
1 TraesCS3D01G056500 chr3A 32639362 32643366 4004 False 5380.000000 5380 90.94200 767 4814 1 chr3A.!!$F1 4047
2 TraesCS3D01G056500 chr3A 32702955 32707105 4150 False 2700.500000 5066 89.73500 767 4814 2 chr3A.!!$F6 4047
3 TraesCS3D01G056500 chr3B 42154699 42159086 4387 True 1417.500000 3576 89.08475 737 5156 4 chr3B.!!$R5 4419
4 TraesCS3D01G056500 chrUn 294207684 294208867 1183 True 1103.000000 1103 83.98400 767 1983 1 chrUn.!!$R1 1216
5 TraesCS3D01G056500 chrUn 402598218 402599396 1178 False 1083.000000 1083 83.78600 772 1983 1 chrUn.!!$F5 1211
6 TraesCS3D01G056500 chrUn 366538502 366539685 1183 True 1081.000000 1081 83.71700 767 1983 1 chrUn.!!$R4 1216
7 TraesCS3D01G056500 chrUn 293548871 293552667 3796 False 1080.000000 1081 83.51850 767 1983 2 chrUn.!!$F7 1216
8 TraesCS3D01G056500 chrUn 251052048 251053226 1178 False 1077.000000 1077 83.71900 772 1983 1 chrUn.!!$F2 1211
9 TraesCS3D01G056500 chrUn 327405651 327406834 1183 True 1075.000000 1075 83.63800 767 1983 1 chrUn.!!$R3 1216
10 TraesCS3D01G056500 chrUn 327372586 327373771 1185 True 1072.000000 1072 83.58400 767 1983 1 chrUn.!!$R2 1216
11 TraesCS3D01G056500 chrUn 251043516 251044694 1178 False 1050.000000 1050 83.32000 772 1983 1 chrUn.!!$F1 1211
12 TraesCS3D01G056500 chrUn 251915468 251923455 7987 False 903.000000 1081 83.94300 767 1983 3 chrUn.!!$F6 1216
13 TraesCS3D01G056500 chrUn 368163847 368164562 715 True 645.000000 645 83.24700 1221 1983 1 chrUn.!!$R5 762
14 TraesCS3D01G056500 chrUn 368216519 368217234 715 True 645.000000 645 83.24700 1221 1983 1 chrUn.!!$R6 762
15 TraesCS3D01G056500 chr1A 369264849 369266472 1623 False 543.333333 979 88.07200 823 2504 3 chr1A.!!$F4 1681
16 TraesCS3D01G056500 chr1A 504890191 504890867 676 True 427.000000 427 79.13700 818 1473 1 chr1A.!!$R3 655
17 TraesCS3D01G056500 chr6D 234436655 234438226 1571 False 739.500000 972 84.36200 818 2451 2 chr6D.!!$F1 1633
18 TraesCS3D01G056500 chr2D 530353414 530354195 781 False 878.000000 878 87.32600 1727 2494 1 chr2D.!!$F3 767
19 TraesCS3D01G056500 chr2A 685530622 685531404 782 False 867.000000 867 87.05600 1728 2494 1 chr2A.!!$F1 766
20 TraesCS3D01G056500 chr7A 616255512 616256260 748 False 837.000000 837 87.28500 1773 2505 1 chr7A.!!$F1 732
21 TraesCS3D01G056500 chr5A 564380178 564380929 751 True 821.000000 821 86.82500 1773 2508 1 chr5A.!!$R1 735
22 TraesCS3D01G056500 chr4A 24454129 24454866 737 False 800.000000 800 86.67600 1773 2494 1 chr4A.!!$F1 721
23 TraesCS3D01G056500 chr4A 339481629 339482320 691 False 381.000000 381 77.93500 818 1473 1 chr4A.!!$F2 655
24 TraesCS3D01G056500 chr7D 52377060 52377590 530 False 280.500000 326 89.16850 818 1327 2 chr7D.!!$F1 509
25 TraesCS3D01G056500 chr5D 458729942 458730513 571 True 278.000000 278 76.33300 67 647 1 chr5D.!!$R2 580
26 TraesCS3D01G056500 chr4D 62306925 62307600 675 False 252.000000 252 74.59600 69 703 1 chr4D.!!$F1 634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
379 396 0.110056 CTGCATTGAAGTGACGGCAC 60.110 55.0 15.39 15.39 45.49 5.01 F
600 642 0.110644 CGGCTTGCGAGAGAAAACAC 60.111 55.0 4.70 0.00 0.00 3.32 F
662 704 0.173708 ACTTTCTCGATCCGGACAGC 59.826 55.0 6.12 0.00 0.00 4.40 F
704 746 0.175073 AAGGTCGGCGTTGGAGATAC 59.825 55.0 6.85 0.00 0.00 2.24 F
1180 3284 0.320374 TTTTGGTCTGGATCGCGTCT 59.680 50.0 5.77 0.00 0.00 4.18 F
1205 3309 0.608035 GGGAATGCAACGTTCTGGGA 60.608 55.0 0.00 0.00 0.00 4.37 F
2674 9763 0.657312 GCTGCTTTGTTTGTTTGCCC 59.343 50.0 0.00 0.00 0.00 5.36 F
3100 10206 0.951040 CACACTCAACCGCTTCTCCC 60.951 60.0 0.00 0.00 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1244 3352 0.034574 ACAGGTCCACACAGCAAACA 60.035 50.000 0.00 0.0 0.00 2.83 R
1677 3833 0.322456 GCCCATGGCTGTCACAGTTA 60.322 55.000 6.09 0.0 46.69 2.24 R
2229 8632 0.598065 GACATGACTTGCCAACACCC 59.402 55.000 0.00 0.0 0.00 4.61 R
2279 8682 3.132289 AGCAAAATGGATCATGCTTGAGG 59.868 43.478 8.40 0.0 46.36 3.86 R
3074 10180 1.014352 GCGGTTGAGTGTGTCTGTTT 58.986 50.000 0.00 0.0 0.00 2.83 R
3116 10222 4.331968 AGAGAACCACAAAGTGACAACAA 58.668 39.130 0.00 0.0 35.23 2.83 R
3891 11002 0.454957 CATTCAGGGCGTTCTTTGCG 60.455 55.000 0.00 0.0 0.00 4.85 R
4899 12237 0.179000 ACATGCAATCGGGAGAGACC 59.821 55.000 0.00 0.0 45.48 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.556817 AGCAAACGCTCCATCATGA 57.443 47.368 0.00 0.00 33.18 3.07
25 26 2.048444 AGCAAACGCTCCATCATGAT 57.952 45.000 1.18 1.18 33.18 2.45
26 27 1.945394 AGCAAACGCTCCATCATGATC 59.055 47.619 4.86 0.00 33.18 2.92
29 30 3.547613 GCAAACGCTCCATCATGATCTTC 60.548 47.826 4.86 0.00 0.00 2.87
30 31 3.548745 AACGCTCCATCATGATCTTCA 57.451 42.857 4.86 0.00 0.00 3.02
31 32 3.766068 ACGCTCCATCATGATCTTCAT 57.234 42.857 4.86 0.00 37.65 2.57
32 33 3.661944 ACGCTCCATCATGATCTTCATC 58.338 45.455 4.86 0.00 34.28 2.92
33 34 3.324268 ACGCTCCATCATGATCTTCATCT 59.676 43.478 4.86 0.00 34.28 2.90
35 36 4.560919 CGCTCCATCATGATCTTCATCTGA 60.561 45.833 4.86 0.00 34.28 3.27
36 37 4.691685 GCTCCATCATGATCTTCATCTGAC 59.308 45.833 4.86 0.00 34.28 3.51
37 38 4.879598 TCCATCATGATCTTCATCTGACG 58.120 43.478 4.86 0.00 34.28 4.35
38 39 3.995048 CCATCATGATCTTCATCTGACGG 59.005 47.826 4.86 0.00 34.28 4.79
39 40 4.262335 CCATCATGATCTTCATCTGACGGA 60.262 45.833 4.86 0.00 34.28 4.69
40 41 4.313277 TCATGATCTTCATCTGACGGAC 57.687 45.455 0.00 0.00 34.28 4.79
42 43 2.365582 TGATCTTCATCTGACGGACGA 58.634 47.619 0.00 0.00 0.00 4.20
43 44 2.356069 TGATCTTCATCTGACGGACGAG 59.644 50.000 0.00 0.00 0.00 4.18
46 47 1.064803 CTTCATCTGACGGACGAGAGG 59.935 57.143 0.00 0.00 0.00 3.69
47 48 0.252197 TCATCTGACGGACGAGAGGA 59.748 55.000 0.00 0.00 0.00 3.71
49 50 0.542333 ATCTGACGGACGAGAGGAGA 59.458 55.000 0.00 0.00 0.00 3.71
50 51 0.391395 TCTGACGGACGAGAGGAGAC 60.391 60.000 0.00 0.00 0.00 3.36
51 52 1.697772 CTGACGGACGAGAGGAGACG 61.698 65.000 0.00 0.00 0.00 4.18
52 53 2.436292 ACGGACGAGAGGAGACGG 60.436 66.667 0.00 0.00 0.00 4.79
53 54 3.203412 CGGACGAGAGGAGACGGG 61.203 72.222 0.00 0.00 0.00 5.28
54 55 2.829458 GGACGAGAGGAGACGGGG 60.829 72.222 0.00 0.00 0.00 5.73
55 56 3.519930 GACGAGAGGAGACGGGGC 61.520 72.222 0.00 0.00 0.00 5.80
77 78 3.121030 GCTGCGACCGTTGATGCT 61.121 61.111 0.00 0.00 0.00 3.79
86 87 0.392863 CCGTTGATGCTGATGGTCCA 60.393 55.000 0.00 0.00 0.00 4.02
144 146 1.598130 GAACTTCCACTGTGCCGCT 60.598 57.895 1.29 0.00 0.00 5.52
171 173 1.874345 GCGGAGAACCAGGACTTCGA 61.874 60.000 18.47 0.00 37.31 3.71
198 203 0.618968 GGGCTTGGAGAGGAGGAAGA 60.619 60.000 0.00 0.00 0.00 2.87
199 204 1.280457 GGCTTGGAGAGGAGGAAGAA 58.720 55.000 0.00 0.00 0.00 2.52
205 210 2.225041 TGGAGAGGAGGAAGAACTCGAA 60.225 50.000 0.00 0.00 38.39 3.71
210 215 3.759618 GAGGAGGAAGAACTCGAAGAAGA 59.240 47.826 0.00 0.00 38.39 2.87
215 220 4.589374 AGGAAGAACTCGAAGAAGAGGAAA 59.411 41.667 0.00 0.00 42.31 3.13
222 227 3.497332 TCGAAGAAGAGGAAAGAGGACA 58.503 45.455 0.00 0.00 0.00 4.02
231 236 1.523758 GAAAGAGGACAATGCGGTGT 58.476 50.000 0.00 0.00 0.00 4.16
233 238 1.981256 AAGAGGACAATGCGGTGTTT 58.019 45.000 0.00 0.00 0.00 2.83
241 246 2.366153 AATGCGGTGTTTGGGAGGGT 62.366 55.000 0.00 0.00 0.00 4.34
243 248 2.513895 CGGTGTTTGGGAGGGTGT 59.486 61.111 0.00 0.00 0.00 4.16
248 265 0.856982 TGTTTGGGAGGGTGTGGATT 59.143 50.000 0.00 0.00 0.00 3.01
311 328 3.023949 GCGGAGTGGCAGTCATCCT 62.024 63.158 22.95 0.00 0.00 3.24
323 340 1.065926 AGTCATCCTGCTTCAATGCGA 60.066 47.619 0.00 0.00 35.36 5.10
352 369 1.338769 CCGAAGTTGGTTTCTCGGGAT 60.339 52.381 1.43 0.00 37.13 3.85
354 371 2.779506 GAAGTTGGTTTCTCGGGATGT 58.220 47.619 0.00 0.00 0.00 3.06
356 373 1.165270 GTTGGTTTCTCGGGATGTGG 58.835 55.000 0.00 0.00 0.00 4.17
373 390 2.221169 GTGGTGTCTGCATTGAAGTGA 58.779 47.619 0.00 0.00 0.00 3.41
379 396 0.110056 CTGCATTGAAGTGACGGCAC 60.110 55.000 15.39 15.39 45.49 5.01
382 402 0.888736 CATTGAAGTGACGGCACCCA 60.889 55.000 20.18 14.24 46.32 4.51
413 433 3.459063 GTCTACGCCGCCTTCCCT 61.459 66.667 0.00 0.00 0.00 4.20
429 449 1.447140 CCTTCCGTCCAAATCGCGA 60.447 57.895 13.09 13.09 0.00 5.87
430 450 0.810031 CCTTCCGTCCAAATCGCGAT 60.810 55.000 17.62 17.62 0.00 4.58
438 459 3.482786 GTCCAAATCGCGATATCAATGC 58.517 45.455 24.00 6.17 0.00 3.56
444 465 3.027170 GCGATATCAATGCCGGCCG 62.027 63.158 26.77 21.04 0.00 6.13
445 466 2.870372 GATATCAATGCCGGCCGC 59.130 61.111 26.77 16.45 38.31 6.53
447 468 0.391130 GATATCAATGCCGGCCGCTA 60.391 55.000 26.77 11.33 38.78 4.26
448 469 0.673644 ATATCAATGCCGGCCGCTAC 60.674 55.000 26.77 12.19 38.78 3.58
455 476 3.272334 CCGGCCGCTACATGCTTC 61.272 66.667 22.85 0.00 40.11 3.86
456 477 3.630148 CGGCCGCTACATGCTTCG 61.630 66.667 14.67 0.00 40.11 3.79
457 478 2.202878 GGCCGCTACATGCTTCGA 60.203 61.111 0.00 0.00 40.11 3.71
471 492 0.811219 CTTCGAGCCGGCATGAATGA 60.811 55.000 31.54 13.49 0.00 2.57
509 551 3.876255 AAGGGGCGAGTGGGGGTTA 62.876 63.158 0.00 0.00 0.00 2.85
569 611 3.431725 GACTTCCGCAAAGCCCCG 61.432 66.667 0.00 0.00 38.67 5.73
570 612 3.894547 GACTTCCGCAAAGCCCCGA 62.895 63.158 0.00 0.00 38.67 5.14
572 614 2.749839 TTCCGCAAAGCCCCGATG 60.750 61.111 0.00 0.00 0.00 3.84
573 615 3.561120 TTCCGCAAAGCCCCGATGT 62.561 57.895 0.00 0.00 0.00 3.06
574 616 3.061848 CCGCAAAGCCCCGATGTT 61.062 61.111 0.00 0.00 0.00 2.71
575 617 2.635443 CCGCAAAGCCCCGATGTTT 61.635 57.895 0.00 0.00 0.00 2.83
577 619 1.665442 GCAAAGCCCCGATGTTTGT 59.335 52.632 0.00 0.00 34.32 2.83
578 620 0.388520 GCAAAGCCCCGATGTTTGTC 60.389 55.000 0.00 0.00 34.32 3.18
579 621 1.247567 CAAAGCCCCGATGTTTGTCT 58.752 50.000 0.00 0.00 0.00 3.41
580 622 1.200020 CAAAGCCCCGATGTTTGTCTC 59.800 52.381 0.00 0.00 0.00 3.36
581 623 0.322546 AAGCCCCGATGTTTGTCTCC 60.323 55.000 0.00 0.00 0.00 3.71
583 625 1.449601 CCCCGATGTTTGTCTCCGG 60.450 63.158 0.00 0.00 39.85 5.14
584 626 2.106683 CCCGATGTTTGTCTCCGGC 61.107 63.158 0.00 0.00 38.92 6.13
585 627 1.079127 CCGATGTTTGTCTCCGGCT 60.079 57.895 0.00 0.00 33.47 5.52
587 629 0.443869 CGATGTTTGTCTCCGGCTTG 59.556 55.000 0.00 0.00 0.00 4.01
588 630 0.169009 GATGTTTGTCTCCGGCTTGC 59.831 55.000 0.00 0.00 0.00 4.01
589 631 1.577328 ATGTTTGTCTCCGGCTTGCG 61.577 55.000 0.00 0.00 0.00 4.85
590 632 1.959226 GTTTGTCTCCGGCTTGCGA 60.959 57.895 0.00 0.00 0.00 5.10
591 633 1.667830 TTTGTCTCCGGCTTGCGAG 60.668 57.895 0.00 0.00 0.00 5.03
592 634 2.094757 TTTGTCTCCGGCTTGCGAGA 62.095 55.000 4.70 0.00 32.72 4.04
593 635 2.202676 GTCTCCGGCTTGCGAGAG 60.203 66.667 4.70 0.00 35.84 3.20
594 636 2.361230 TCTCCGGCTTGCGAGAGA 60.361 61.111 4.70 8.49 31.53 3.10
595 637 1.977009 TCTCCGGCTTGCGAGAGAA 60.977 57.895 4.70 0.00 32.58 2.87
597 639 0.670546 CTCCGGCTTGCGAGAGAAAA 60.671 55.000 4.70 0.00 0.00 2.29
598 640 0.949105 TCCGGCTTGCGAGAGAAAAC 60.949 55.000 4.70 0.00 0.00 2.43
600 642 0.110644 CGGCTTGCGAGAGAAAACAC 60.111 55.000 4.70 0.00 0.00 3.32
601 643 0.944386 GGCTTGCGAGAGAAAACACA 59.056 50.000 4.70 0.00 0.00 3.72
602 644 1.537202 GGCTTGCGAGAGAAAACACAT 59.463 47.619 4.70 0.00 0.00 3.21
603 645 2.413371 GGCTTGCGAGAGAAAACACATC 60.413 50.000 4.70 0.00 0.00 3.06
604 646 2.413371 GCTTGCGAGAGAAAACACATCC 60.413 50.000 4.70 0.00 0.00 3.51
605 647 1.808411 TGCGAGAGAAAACACATCCC 58.192 50.000 0.00 0.00 0.00 3.85
606 648 0.721718 GCGAGAGAAAACACATCCCG 59.278 55.000 0.00 0.00 0.00 5.14
608 650 1.993370 CGAGAGAAAACACATCCCGAC 59.007 52.381 0.00 0.00 0.00 4.79
609 651 2.347731 GAGAGAAAACACATCCCGACC 58.652 52.381 0.00 0.00 0.00 4.79
610 652 1.076332 GAGAAAACACATCCCGACCG 58.924 55.000 0.00 0.00 0.00 4.79
612 654 1.228003 AAAACACATCCCGACCGCA 60.228 52.632 0.00 0.00 0.00 5.69
613 655 1.512156 AAAACACATCCCGACCGCAC 61.512 55.000 0.00 0.00 0.00 5.34
614 656 3.894547 AACACATCCCGACCGCACC 62.895 63.158 0.00 0.00 0.00 5.01
630 672 2.279517 CCGCAGGCCGATACAGTC 60.280 66.667 0.00 0.00 46.14 3.51
632 674 1.299468 CGCAGGCCGATACAGTCTC 60.299 63.158 0.00 0.00 40.02 3.36
633 675 1.299468 GCAGGCCGATACAGTCTCG 60.299 63.158 0.00 1.36 35.92 4.04
635 677 0.248661 CAGGCCGATACAGTCTCGTG 60.249 60.000 7.49 1.14 34.36 4.35
636 678 0.680280 AGGCCGATACAGTCTCGTGT 60.680 55.000 7.49 0.00 34.36 4.49
638 680 1.269166 GCCGATACAGTCTCGTGTTG 58.731 55.000 7.49 0.00 34.36 3.33
639 681 1.909376 CCGATACAGTCTCGTGTTGG 58.091 55.000 7.49 0.00 34.36 3.77
640 682 1.471287 CCGATACAGTCTCGTGTTGGA 59.529 52.381 7.49 0.00 34.29 3.53
641 683 2.099263 CCGATACAGTCTCGTGTTGGAT 59.901 50.000 7.49 0.00 34.29 3.41
642 684 3.108881 CGATACAGTCTCGTGTTGGATG 58.891 50.000 0.21 0.00 31.46 3.51
643 685 3.181500 CGATACAGTCTCGTGTTGGATGA 60.181 47.826 0.21 0.00 31.46 2.92
644 686 2.440539 ACAGTCTCGTGTTGGATGAC 57.559 50.000 0.00 0.00 0.00 3.06
645 687 1.964223 ACAGTCTCGTGTTGGATGACT 59.036 47.619 0.00 0.00 38.36 3.41
646 688 2.365617 ACAGTCTCGTGTTGGATGACTT 59.634 45.455 0.00 0.00 36.05 3.01
647 689 3.181465 ACAGTCTCGTGTTGGATGACTTT 60.181 43.478 0.00 0.00 36.05 2.66
649 691 3.322254 AGTCTCGTGTTGGATGACTTTCT 59.678 43.478 0.00 0.00 34.78 2.52
650 692 3.675698 GTCTCGTGTTGGATGACTTTCTC 59.324 47.826 0.00 0.00 0.00 2.87
651 693 2.663602 CTCGTGTTGGATGACTTTCTCG 59.336 50.000 0.00 0.00 0.00 4.04
652 694 2.295070 TCGTGTTGGATGACTTTCTCGA 59.705 45.455 0.00 0.00 0.00 4.04
655 697 3.619038 GTGTTGGATGACTTTCTCGATCC 59.381 47.826 0.00 0.00 35.80 3.36
656 698 2.860735 GTTGGATGACTTTCTCGATCCG 59.139 50.000 0.00 0.00 37.75 4.18
658 700 1.681793 GGATGACTTTCTCGATCCGGA 59.318 52.381 6.61 6.61 0.00 5.14
659 701 2.544069 GGATGACTTTCTCGATCCGGAC 60.544 54.545 6.12 0.00 0.00 4.79
660 702 1.541379 TGACTTTCTCGATCCGGACA 58.459 50.000 6.12 0.00 0.00 4.02
661 703 1.472878 TGACTTTCTCGATCCGGACAG 59.527 52.381 6.12 3.44 0.00 3.51
662 704 0.173708 ACTTTCTCGATCCGGACAGC 59.826 55.000 6.12 0.00 0.00 4.40
663 705 0.867753 CTTTCTCGATCCGGACAGCG 60.868 60.000 6.12 11.91 0.00 5.18
664 706 2.884087 TTTCTCGATCCGGACAGCGC 62.884 60.000 6.12 0.00 0.00 5.92
668 710 4.814294 GATCCGGACAGCGCGGTT 62.814 66.667 15.89 0.00 32.11 4.44
673 715 2.813908 GGACAGCGCGGTTCGAAT 60.814 61.111 15.89 0.00 41.67 3.34
674 716 2.395690 GACAGCGCGGTTCGAATG 59.604 61.111 15.89 0.33 41.67 2.67
675 717 2.048597 ACAGCGCGGTTCGAATGA 60.049 55.556 8.73 0.00 41.67 2.57
676 718 2.014093 GACAGCGCGGTTCGAATGAG 62.014 60.000 15.89 0.07 41.67 2.90
678 720 1.080093 AGCGCGGTTCGAATGAGAA 60.080 52.632 4.23 0.00 41.67 2.87
679 721 1.078759 AGCGCGGTTCGAATGAGAAG 61.079 55.000 4.23 0.00 41.67 2.85
680 722 1.999051 CGCGGTTCGAATGAGAAGG 59.001 57.895 0.00 0.00 41.67 3.46
682 724 1.439679 GCGGTTCGAATGAGAAGGTT 58.560 50.000 0.00 0.00 0.00 3.50
683 725 1.804748 GCGGTTCGAATGAGAAGGTTT 59.195 47.619 0.00 0.00 0.00 3.27
684 726 2.997986 GCGGTTCGAATGAGAAGGTTTA 59.002 45.455 0.00 0.00 0.00 2.01
685 727 3.434299 GCGGTTCGAATGAGAAGGTTTAA 59.566 43.478 0.00 0.00 0.00 1.52
686 728 4.083696 GCGGTTCGAATGAGAAGGTTTAAA 60.084 41.667 0.00 0.00 0.00 1.52
687 729 5.618561 CGGTTCGAATGAGAAGGTTTAAAG 58.381 41.667 0.00 0.00 0.00 1.85
688 730 5.390567 CGGTTCGAATGAGAAGGTTTAAAGG 60.391 44.000 0.00 0.00 0.00 3.11
690 732 6.348295 GGTTCGAATGAGAAGGTTTAAAGGTC 60.348 42.308 0.00 0.00 0.00 3.85
691 733 4.927425 TCGAATGAGAAGGTTTAAAGGTCG 59.073 41.667 0.00 0.00 0.00 4.79
692 734 4.092968 CGAATGAGAAGGTTTAAAGGTCGG 59.907 45.833 0.00 0.00 0.00 4.79
693 735 2.774687 TGAGAAGGTTTAAAGGTCGGC 58.225 47.619 0.00 0.00 0.00 5.54
694 736 1.730612 GAGAAGGTTTAAAGGTCGGCG 59.269 52.381 0.00 0.00 0.00 6.46
695 737 1.071228 AGAAGGTTTAAAGGTCGGCGT 59.929 47.619 6.85 0.00 0.00 5.68
696 738 1.875514 GAAGGTTTAAAGGTCGGCGTT 59.124 47.619 6.85 0.00 0.00 4.84
697 739 1.232119 AGGTTTAAAGGTCGGCGTTG 58.768 50.000 6.85 0.00 0.00 4.10
698 740 0.239082 GGTTTAAAGGTCGGCGTTGG 59.761 55.000 6.85 0.00 0.00 3.77
700 742 1.196127 GTTTAAAGGTCGGCGTTGGAG 59.804 52.381 6.85 0.00 0.00 3.86
702 744 0.899720 TAAAGGTCGGCGTTGGAGAT 59.100 50.000 6.85 0.00 0.00 2.75
703 745 0.899720 AAAGGTCGGCGTTGGAGATA 59.100 50.000 6.85 0.00 0.00 1.98
704 746 0.175073 AAGGTCGGCGTTGGAGATAC 59.825 55.000 6.85 0.00 0.00 2.24
705 747 1.588139 GGTCGGCGTTGGAGATACG 60.588 63.158 6.85 0.00 41.71 3.06
712 754 1.772182 CGTTGGAGATACGCTGATCC 58.228 55.000 0.00 0.00 31.73 3.36
713 755 1.338337 CGTTGGAGATACGCTGATCCT 59.662 52.381 0.00 0.00 32.79 3.24
715 757 3.365465 CGTTGGAGATACGCTGATCCTAG 60.365 52.174 0.00 0.00 32.79 3.02
717 759 3.413327 TGGAGATACGCTGATCCTAGAC 58.587 50.000 0.00 0.00 32.79 2.59
718 760 2.750712 GGAGATACGCTGATCCTAGACC 59.249 54.545 0.00 0.00 0.00 3.85
719 761 2.417239 GAGATACGCTGATCCTAGACCG 59.583 54.545 0.00 0.00 0.00 4.79
720 762 1.469308 GATACGCTGATCCTAGACCGG 59.531 57.143 0.00 0.00 0.00 5.28
721 763 0.536687 TACGCTGATCCTAGACCGGG 60.537 60.000 6.32 0.00 0.00 5.73
722 764 1.528542 CGCTGATCCTAGACCGGGA 60.529 63.158 6.32 0.00 37.26 5.14
723 765 0.896019 CGCTGATCCTAGACCGGGAT 60.896 60.000 6.32 0.00 45.23 3.85
725 767 2.096248 GCTGATCCTAGACCGGGATAG 58.904 57.143 6.32 7.35 42.91 2.08
726 768 2.555670 GCTGATCCTAGACCGGGATAGT 60.556 54.545 6.32 0.00 42.91 2.12
729 771 2.267174 TCCTAGACCGGGATAGTTCG 57.733 55.000 6.32 0.00 0.00 3.95
731 773 2.092212 TCCTAGACCGGGATAGTTCGTT 60.092 50.000 6.32 0.00 0.00 3.85
732 774 2.692041 CCTAGACCGGGATAGTTCGTTT 59.308 50.000 6.32 0.00 0.00 3.60
734 776 4.339247 CCTAGACCGGGATAGTTCGTTTTA 59.661 45.833 6.32 0.00 0.00 1.52
752 794 2.162338 TAGCAACCACCGACGGGAAG 62.162 60.000 20.00 8.68 36.97 3.46
753 795 3.047877 CAACCACCGACGGGAAGC 61.048 66.667 20.00 0.00 36.97 3.86
755 797 3.819877 AACCACCGACGGGAAGCAC 62.820 63.158 20.00 0.00 36.97 4.40
758 800 4.657824 ACCGACGGGAAGCACGTG 62.658 66.667 20.00 12.28 45.68 4.49
785 2613 7.516155 CGACGTTGTTGTAGAGAAAAATGAGAA 60.516 37.037 0.00 0.00 0.00 2.87
855 2683 2.530151 TGCTGGAGCCTGGTCCTT 60.530 61.111 15.76 0.00 41.18 3.36
917 2754 1.668151 AAGAACTCGGGCAAGTCGC 60.668 57.895 0.00 0.00 41.28 5.19
1022 2954 3.972133 TGAATCCCGAGTAGTAAGTCCA 58.028 45.455 0.00 0.00 0.00 4.02
1087 3183 1.696832 CGGCGCTTTTAGGCTGAGAC 61.697 60.000 7.64 0.00 37.75 3.36
1138 3238 1.066858 GTTGACTCTCGATCCCAGCAA 60.067 52.381 0.00 0.00 0.00 3.91
1152 3253 0.967803 CAGCAAAATCGTCGCGTTTC 59.032 50.000 5.77 0.00 0.00 2.78
1155 3256 1.637563 GCAAAATCGTCGCGTTTCTTC 59.362 47.619 5.77 0.00 0.00 2.87
1161 3265 2.466846 TCGTCGCGTTTCTTCTTCTTT 58.533 42.857 5.77 0.00 0.00 2.52
1162 3266 2.861935 TCGTCGCGTTTCTTCTTCTTTT 59.138 40.909 5.77 0.00 0.00 2.27
1180 3284 0.320374 TTTTGGTCTGGATCGCGTCT 59.680 50.000 5.77 0.00 0.00 4.18
1181 3285 1.179152 TTTGGTCTGGATCGCGTCTA 58.821 50.000 5.77 0.00 0.00 2.59
1200 3304 0.953960 ACGAGGGGAATGCAACGTTC 60.954 55.000 0.00 0.00 0.00 3.95
1201 3305 0.673644 CGAGGGGAATGCAACGTTCT 60.674 55.000 0.00 0.00 0.00 3.01
1202 3306 0.804989 GAGGGGAATGCAACGTTCTG 59.195 55.000 0.00 0.00 0.00 3.02
1203 3307 0.609131 AGGGGAATGCAACGTTCTGG 60.609 55.000 0.00 0.00 0.00 3.86
1205 3309 0.608035 GGGAATGCAACGTTCTGGGA 60.608 55.000 0.00 0.00 0.00 4.37
1206 3310 1.463674 GGAATGCAACGTTCTGGGAT 58.536 50.000 0.00 0.00 0.00 3.85
1212 3319 4.274602 TGCAACGTTCTGGGATAGTTTA 57.725 40.909 0.00 0.00 0.00 2.01
1242 3350 2.681152 AGGTGAAATTTGACGCGAAC 57.319 45.000 15.93 7.16 0.00 3.95
1244 3352 2.616842 AGGTGAAATTTGACGCGAACTT 59.383 40.909 15.93 0.00 0.00 2.66
1262 3370 1.066002 CTTGTTTGCTGTGTGGACCTG 59.934 52.381 0.00 0.00 0.00 4.00
1285 3393 3.536917 CTGGATGCCGCCGGTAGA 61.537 66.667 4.45 0.00 0.00 2.59
1286 3394 2.842462 TGGATGCCGCCGGTAGAT 60.842 61.111 4.45 0.00 0.00 1.98
1287 3395 2.357517 GGATGCCGCCGGTAGATG 60.358 66.667 4.45 0.00 0.00 2.90
1288 3396 2.421739 GATGCCGCCGGTAGATGT 59.578 61.111 4.45 0.00 0.00 3.06
1289 3397 1.663739 GATGCCGCCGGTAGATGTA 59.336 57.895 4.45 0.00 0.00 2.29
1290 3398 0.666577 GATGCCGCCGGTAGATGTAC 60.667 60.000 4.45 0.00 0.00 2.90
1296 3406 2.199236 CGCCGGTAGATGTACCTTTTC 58.801 52.381 16.45 2.87 46.13 2.29
1299 3409 3.621715 GCCGGTAGATGTACCTTTTCTTG 59.378 47.826 16.45 0.00 46.13 3.02
1335 3446 1.775385 AGTGTTTCCAGGGGTGTTTG 58.225 50.000 0.00 0.00 0.00 2.93
1339 3450 1.138069 GTTTCCAGGGGTGTTTGTTGG 59.862 52.381 0.00 0.00 0.00 3.77
1382 3505 9.915629 CTAGTACTATCTAATGGCAGTAAAAGG 57.084 37.037 2.33 0.00 0.00 3.11
1388 3511 2.514458 ATGGCAGTAAAAGGACAGGG 57.486 50.000 0.00 0.00 0.00 4.45
1391 3514 1.616159 GCAGTAAAAGGACAGGGCAA 58.384 50.000 0.00 0.00 0.00 4.52
1395 3518 4.503123 GCAGTAAAAGGACAGGGCAATTTT 60.503 41.667 0.00 0.00 0.00 1.82
1396 3519 4.990426 CAGTAAAAGGACAGGGCAATTTTG 59.010 41.667 0.00 0.00 0.00 2.44
1397 3520 4.898861 AGTAAAAGGACAGGGCAATTTTGA 59.101 37.500 0.00 0.00 0.00 2.69
1399 3522 4.980339 AAAGGACAGGGCAATTTTGATT 57.020 36.364 0.00 0.00 0.00 2.57
1400 3523 3.967332 AGGACAGGGCAATTTTGATTG 57.033 42.857 0.00 0.00 34.79 2.67
1548 3681 2.224475 GCAGATGCAGATGTGGGTAGAT 60.224 50.000 0.00 0.00 41.59 1.98
1583 3716 8.588290 TGTTGATACTGGTTGGCTAAATTATT 57.412 30.769 0.00 0.00 0.00 1.40
1669 3825 3.119316 ACGACCAAATGCTTGTTTGTTCA 60.119 39.130 0.00 0.00 37.37 3.18
1670 3826 4.050553 CGACCAAATGCTTGTTTGTTCAT 58.949 39.130 8.31 0.00 37.37 2.57
1671 3827 4.084952 CGACCAAATGCTTGTTTGTTCATG 60.085 41.667 8.31 0.00 37.37 3.07
1672 3828 4.768583 ACCAAATGCTTGTTTGTTCATGT 58.231 34.783 0.00 0.00 37.37 3.21
1673 3829 5.184711 ACCAAATGCTTGTTTGTTCATGTT 58.815 33.333 0.00 0.00 37.37 2.71
1674 3830 5.064962 ACCAAATGCTTGTTTGTTCATGTTG 59.935 36.000 0.00 0.00 37.37 3.33
1675 3831 5.064962 CCAAATGCTTGTTTGTTCATGTTGT 59.935 36.000 0.00 0.00 37.37 3.32
1676 3832 6.257411 CCAAATGCTTGTTTGTTCATGTTGTA 59.743 34.615 0.00 0.00 37.37 2.41
1677 3833 7.041916 CCAAATGCTTGTTTGTTCATGTTGTAT 60.042 33.333 0.00 0.00 37.37 2.29
1678 3834 8.976471 CAAATGCTTGTTTGTTCATGTTGTATA 58.024 29.630 0.00 0.00 35.02 1.47
1679 3835 9.539825 AAATGCTTGTTTGTTCATGTTGTATAA 57.460 25.926 0.00 0.00 0.00 0.98
1680 3836 7.922505 TGCTTGTTTGTTCATGTTGTATAAC 57.077 32.000 0.00 0.00 37.32 1.89
1681 3837 7.711846 TGCTTGTTTGTTCATGTTGTATAACT 58.288 30.769 3.89 0.00 37.68 2.24
1682 3838 7.647318 TGCTTGTTTGTTCATGTTGTATAACTG 59.353 33.333 3.89 0.66 37.68 3.16
1683 3839 7.647715 GCTTGTTTGTTCATGTTGTATAACTGT 59.352 33.333 3.89 0.00 37.68 3.55
1684 3840 8.848948 TTGTTTGTTCATGTTGTATAACTGTG 57.151 30.769 3.89 3.50 37.68 3.66
1685 3841 8.214721 TGTTTGTTCATGTTGTATAACTGTGA 57.785 30.769 3.89 5.61 37.68 3.58
1686 3842 8.126074 TGTTTGTTCATGTTGTATAACTGTGAC 58.874 33.333 3.89 4.75 37.68 3.67
1687 3843 7.793927 TTGTTCATGTTGTATAACTGTGACA 57.206 32.000 3.89 6.67 37.68 3.58
1688 3844 7.420184 TGTTCATGTTGTATAACTGTGACAG 57.580 36.000 11.70 11.70 37.68 3.51
1689 3845 6.073276 TGTTCATGTTGTATAACTGTGACAGC 60.073 38.462 13.37 0.00 37.68 4.40
1690 3846 4.935205 TCATGTTGTATAACTGTGACAGCC 59.065 41.667 13.37 0.00 37.68 4.85
1712 5076 2.833794 TGGGCTGATATAACTGTTCGC 58.166 47.619 0.00 0.00 0.00 4.70
1872 8261 4.685924 CAAAACTGACATTTGGCTGAGTT 58.314 39.130 0.00 0.00 34.81 3.01
1938 8327 8.201464 TGTCTAAGCCTGACAATATTATTCGAA 58.799 33.333 0.00 0.00 40.89 3.71
1939 8328 9.042008 GTCTAAGCCTGACAATATTATTCGAAA 57.958 33.333 0.00 0.00 34.80 3.46
1940 8329 9.261180 TCTAAGCCTGACAATATTATTCGAAAG 57.739 33.333 0.00 0.00 0.00 2.62
2060 8462 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
2070 8472 2.612115 CCTTCCCTGGACCCTGCT 60.612 66.667 0.00 0.00 0.00 4.24
2152 8555 4.036144 GCTTGTTTTCTTCTCTGCTCACTT 59.964 41.667 0.00 0.00 0.00 3.16
2187 8590 6.534634 AGACTAACATTCTAATATGTGGCCC 58.465 40.000 0.00 0.00 38.69 5.80
2188 8591 5.631119 ACTAACATTCTAATATGTGGCCCC 58.369 41.667 0.00 0.00 38.69 5.80
2229 8632 4.008539 GCTTTTGCTTATTGGAGACTCG 57.991 45.455 0.00 0.00 43.35 4.18
2408 8825 6.266203 CGTAAGCTGAATCATTACTCACAG 57.734 41.667 5.54 0.00 0.00 3.66
2497 8917 2.339769 GGGCATCCCTACATACTTCCT 58.660 52.381 0.00 0.00 41.34 3.36
2498 8918 2.303311 GGGCATCCCTACATACTTCCTC 59.697 54.545 0.00 0.00 41.34 3.71
2507 8927 2.816411 ACATACTTCCTCCGTCTGGAA 58.184 47.619 0.00 0.00 45.87 3.53
2508 8928 3.375699 ACATACTTCCTCCGTCTGGAAT 58.624 45.455 0.00 0.00 45.87 3.01
2509 8929 3.775316 ACATACTTCCTCCGTCTGGAATT 59.225 43.478 0.00 0.00 45.87 2.17
2510 8930 4.960469 ACATACTTCCTCCGTCTGGAATTA 59.040 41.667 0.00 0.00 45.87 1.40
2512 8932 3.442076 ACTTCCTCCGTCTGGAATTACT 58.558 45.455 0.00 0.00 45.87 2.24
2517 8937 3.056107 CCTCCGTCTGGAATTACTTGTCA 60.056 47.826 0.00 0.00 45.87 3.58
2533 8955 6.992063 ACTTGTCACTCAAATGGATGTATC 57.008 37.500 0.00 0.00 35.48 2.24
2536 8958 7.984050 ACTTGTCACTCAAATGGATGTATCTAG 59.016 37.037 0.00 0.00 35.48 2.43
2537 8959 7.660030 TGTCACTCAAATGGATGTATCTAGA 57.340 36.000 0.00 0.00 0.00 2.43
2538 8960 8.255111 TGTCACTCAAATGGATGTATCTAGAT 57.745 34.615 10.73 10.73 0.00 1.98
2539 8961 8.146412 TGTCACTCAAATGGATGTATCTAGATG 58.854 37.037 15.79 0.00 0.00 2.90
2540 8962 8.147058 GTCACTCAAATGGATGTATCTAGATGT 58.853 37.037 15.79 1.25 0.00 3.06
2541 8963 9.367160 TCACTCAAATGGATGTATCTAGATGTA 57.633 33.333 15.79 4.44 0.00 2.29
2674 9763 0.657312 GCTGCTTTGTTTGTTTGCCC 59.343 50.000 0.00 0.00 0.00 5.36
2709 9798 1.153939 CTCTTGGCAGGACGACTCG 60.154 63.158 0.00 0.00 0.00 4.18
2748 9837 8.723942 ACATCAGTACTATTGGAGTTGATTTC 57.276 34.615 0.00 0.00 34.65 2.17
2815 9904 7.384387 ACAGTTCCTTCTATCAAACGTAACTTC 59.616 37.037 0.00 0.00 0.00 3.01
2819 9908 8.530269 TCCTTCTATCAAACGTAACTTCTTTC 57.470 34.615 0.00 0.00 0.00 2.62
2845 9934 6.937436 AAACGTTGACAGAAAATAAGGACT 57.063 33.333 0.00 0.00 0.00 3.85
2881 9970 5.392380 CGGAAAGACTATCAAGCTGCAAATT 60.392 40.000 1.02 0.00 0.00 1.82
2920 10026 7.412137 TCTCGTGATTTACTTGATATGCATG 57.588 36.000 10.16 0.00 0.00 4.06
2960 10066 1.246649 TGCCTGTGCAAGTACCATTG 58.753 50.000 0.00 0.00 46.66 2.82
2973 10079 7.013750 TGCAAGTACCATTGAGTTGTGATTTTA 59.986 33.333 0.00 0.00 31.55 1.52
3000 10106 8.272545 TGATGATCTGTAAAACTTCATTGAGG 57.727 34.615 0.00 0.00 0.00 3.86
3014 10120 3.523157 TCATTGAGGCATAGTTCTCCCAA 59.477 43.478 0.00 0.00 0.00 4.12
3100 10206 0.951040 CACACTCAACCGCTTCTCCC 60.951 60.000 0.00 0.00 0.00 4.30
3114 10220 5.980116 CCGCTTCTCCCGAATATATATGAAG 59.020 44.000 11.31 11.31 34.55 3.02
3116 10222 7.036220 CGCTTCTCCCGAATATATATGAAGTT 58.964 38.462 14.75 0.00 34.12 2.66
3333 10439 3.084786 CCTCTGTTTTTCATCTCCCACC 58.915 50.000 0.00 0.00 0.00 4.61
3353 10459 2.625737 CTCAGTTGCAGTGATACAGGG 58.374 52.381 0.00 0.00 0.00 4.45
3388 10495 8.964150 CCTTTTCAAAGTTATTAAACACCTTCG 58.036 33.333 0.00 0.00 38.12 3.79
3400 10507 5.729974 AAACACCTTCGTTCTACAAACTC 57.270 39.130 0.00 0.00 0.00 3.01
3401 10508 3.725490 ACACCTTCGTTCTACAAACTCC 58.275 45.455 0.00 0.00 0.00 3.85
3942 11053 2.055633 CATGGCCATGGCTGCTTCA 61.056 57.895 34.31 23.96 41.60 3.02
3977 11088 5.221783 GGTTTGGACCCAGACTTAAACTAGA 60.222 44.000 9.22 0.00 40.25 2.43
3990 11101 9.606631 AGACTTAAACTAGAATTCATGATGGTC 57.393 33.333 8.44 6.34 0.00 4.02
4330 11443 2.649531 TGGTTAACTTGGGGTGACAG 57.350 50.000 5.42 0.00 0.00 3.51
4348 11461 2.423892 ACAGTGCTGGTCATAGTACTCG 59.576 50.000 0.00 0.00 40.90 4.18
4424 11537 3.516981 TTTTCTCCTCTCAGCGAGATG 57.483 47.619 8.38 6.62 42.62 2.90
4437 11551 1.981533 GCGAGATGCAAACAAGAAAGC 59.018 47.619 0.00 0.00 45.45 3.51
4555 11671 2.675032 CGAGTATGCTTTCAGGCTGTCA 60.675 50.000 15.27 8.92 0.00 3.58
4729 12046 8.410141 TGGCAGTTTATATTACTTGGCAAATAC 58.590 33.333 0.00 0.00 31.56 1.89
4734 12051 9.607285 GTTTATATTACTTGGCAAATACGGATG 57.393 33.333 0.00 0.00 0.00 3.51
4782 12100 9.234384 CTCCGTATCTTTATATAAGGCGTATTG 57.766 37.037 0.00 0.00 32.76 1.90
4783 12101 8.192774 TCCGTATCTTTATATAAGGCGTATTGG 58.807 37.037 0.00 3.60 32.76 3.16
4839 12157 9.010366 GCATTTGTTCTAATTTCTCGTAATTCC 57.990 33.333 0.00 0.00 0.00 3.01
4844 12162 7.977293 TGTTCTAATTTCTCGTAATTCCGATCA 59.023 33.333 0.00 0.00 36.08 2.92
4847 12165 8.141909 TCTAATTTCTCGTAATTCCGATCATGT 58.858 33.333 0.00 0.00 36.08 3.21
4848 12166 9.406828 CTAATTTCTCGTAATTCCGATCATGTA 57.593 33.333 0.00 0.00 36.08 2.29
4849 12167 8.833231 AATTTCTCGTAATTCCGATCATGTAT 57.167 30.769 0.00 0.00 36.08 2.29
4852 12170 9.569167 TTTCTCGTAATTCCGATCATGTATATC 57.431 33.333 0.00 0.00 36.08 1.63
4853 12171 8.507524 TCTCGTAATTCCGATCATGTATATCT 57.492 34.615 0.00 0.00 36.08 1.98
4854 12172 8.957466 TCTCGTAATTCCGATCATGTATATCTT 58.043 33.333 0.00 0.00 36.08 2.40
4855 12173 9.227490 CTCGTAATTCCGATCATGTATATCTTC 57.773 37.037 0.00 0.00 36.08 2.87
4857 12175 7.435488 CGTAATTCCGATCATGTATATCTTCCC 59.565 40.741 0.00 0.00 0.00 3.97
4876 12214 7.056635 TCTTCCCTGATTTCATGTATTTCTCC 58.943 38.462 0.00 0.00 0.00 3.71
4899 12237 6.482308 TCCTTGTAGAGAAAGAAAAGGAAACG 59.518 38.462 0.00 0.00 40.06 3.60
4900 12238 6.293462 CCTTGTAGAGAAAGAAAAGGAAACGG 60.293 42.308 0.00 0.00 37.02 4.44
4922 12367 2.965147 TCTCTCCCGATTGCATGTATCA 59.035 45.455 9.60 0.00 0.00 2.15
4931 12376 5.504665 CCGATTGCATGTATCACTTCCTTTC 60.505 44.000 9.60 0.00 0.00 2.62
4940 12385 3.478857 TCACTTCCTTTCGTTGCCTAA 57.521 42.857 0.00 0.00 0.00 2.69
4986 12431 6.707599 ACGAATTAGACAAGTTAGACAAGC 57.292 37.500 0.00 0.00 0.00 4.01
4995 12440 6.767902 AGACAAGTTAGACAAGCAGAATTTCA 59.232 34.615 0.00 0.00 0.00 2.69
5008 12453 8.348507 CAAGCAGAATTTCATCCTAAATAGTCC 58.651 37.037 0.00 0.00 0.00 3.85
5041 12486 8.050778 TGTGCCTTGAAAATAATACACCTTAG 57.949 34.615 0.00 0.00 0.00 2.18
5097 12542 3.994165 AGGCTCGTCCTGTTAGGTA 57.006 52.632 0.00 0.00 45.54 3.08
5098 12543 2.226962 AGGCTCGTCCTGTTAGGTAA 57.773 50.000 0.00 0.00 45.54 2.85
5099 12544 2.532843 AGGCTCGTCCTGTTAGGTAAA 58.467 47.619 0.00 0.00 45.54 2.01
5100 12545 2.901839 AGGCTCGTCCTGTTAGGTAAAA 59.098 45.455 0.00 0.00 45.54 1.52
5101 12546 3.056035 AGGCTCGTCCTGTTAGGTAAAAG 60.056 47.826 0.00 0.00 45.54 2.27
5102 12547 3.306571 GGCTCGTCCTGTTAGGTAAAAGT 60.307 47.826 0.00 0.00 36.53 2.66
5103 12548 4.082026 GGCTCGTCCTGTTAGGTAAAAGTA 60.082 45.833 0.00 0.00 36.53 2.24
5104 12549 4.861462 GCTCGTCCTGTTAGGTAAAAGTAC 59.139 45.833 0.00 0.00 36.53 2.73
5105 12550 5.336293 GCTCGTCCTGTTAGGTAAAAGTACT 60.336 44.000 0.00 0.00 36.53 2.73
5106 12551 6.017400 TCGTCCTGTTAGGTAAAAGTACTG 57.983 41.667 0.00 0.00 36.53 2.74
5107 12552 4.624452 CGTCCTGTTAGGTAAAAGTACTGC 59.376 45.833 0.00 0.00 36.53 4.40
5108 12553 4.934001 GTCCTGTTAGGTAAAAGTACTGCC 59.066 45.833 0.00 0.00 36.53 4.85
5132 12577 1.138661 CTGGAGCCTTAGAGCCTTCTG 59.861 57.143 0.00 0.00 34.79 3.02
5146 12591 1.909302 CCTTCTGCTTTACTCCCTCCA 59.091 52.381 0.00 0.00 0.00 3.86
5147 12592 2.507471 CCTTCTGCTTTACTCCCTCCAT 59.493 50.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.945394 AGATCATGATGGAGCGTTTGC 59.055 47.619 14.30 0.00 43.24 3.68
8 9 3.624410 TGAAGATCATGATGGAGCGTTTG 59.376 43.478 14.30 0.00 0.00 2.93
9 10 3.877559 TGAAGATCATGATGGAGCGTTT 58.122 40.909 14.30 0.00 0.00 3.60
10 11 3.548745 TGAAGATCATGATGGAGCGTT 57.451 42.857 14.30 0.00 0.00 4.84
12 13 3.680458 CAGATGAAGATCATGATGGAGCG 59.320 47.826 14.30 0.00 37.20 5.03
13 14 4.691685 GTCAGATGAAGATCATGATGGAGC 59.308 45.833 14.30 0.00 37.20 4.70
14 15 4.924462 CGTCAGATGAAGATCATGATGGAG 59.076 45.833 14.30 0.00 37.20 3.86
15 16 4.262335 CCGTCAGATGAAGATCATGATGGA 60.262 45.833 14.30 0.00 40.73 3.41
16 17 3.995048 CCGTCAGATGAAGATCATGATGG 59.005 47.826 14.30 0.00 37.20 3.51
17 18 4.685165 GTCCGTCAGATGAAGATCATGATG 59.315 45.833 14.30 0.00 37.20 3.07
19 20 3.243201 CGTCCGTCAGATGAAGATCATGA 60.243 47.826 0.00 0.00 37.20 3.07
20 21 3.048501 CGTCCGTCAGATGAAGATCATG 58.951 50.000 0.00 0.00 37.20 3.07
22 23 2.356069 CTCGTCCGTCAGATGAAGATCA 59.644 50.000 0.00 0.00 40.06 2.92
23 24 2.614520 TCTCGTCCGTCAGATGAAGATC 59.385 50.000 0.00 0.00 40.06 2.75
24 25 2.616376 CTCTCGTCCGTCAGATGAAGAT 59.384 50.000 0.00 0.00 40.06 2.40
25 26 2.010497 CTCTCGTCCGTCAGATGAAGA 58.990 52.381 0.00 0.00 40.06 2.87
26 27 1.064803 CCTCTCGTCCGTCAGATGAAG 59.935 57.143 0.00 0.00 40.06 3.02
29 30 0.660488 CTCCTCTCGTCCGTCAGATG 59.340 60.000 0.00 0.00 0.00 2.90
30 31 0.542333 TCTCCTCTCGTCCGTCAGAT 59.458 55.000 0.00 0.00 0.00 2.90
31 32 0.391395 GTCTCCTCTCGTCCGTCAGA 60.391 60.000 0.00 0.00 0.00 3.27
32 33 1.697772 CGTCTCCTCTCGTCCGTCAG 61.698 65.000 0.00 0.00 0.00 3.51
33 34 1.740664 CGTCTCCTCTCGTCCGTCA 60.741 63.158 0.00 0.00 0.00 4.35
35 36 2.436292 CCGTCTCCTCTCGTCCGT 60.436 66.667 0.00 0.00 0.00 4.69
36 37 3.203412 CCCGTCTCCTCTCGTCCG 61.203 72.222 0.00 0.00 0.00 4.79
37 38 2.829458 CCCCGTCTCCTCTCGTCC 60.829 72.222 0.00 0.00 0.00 4.79
38 39 3.519930 GCCCCGTCTCCTCTCGTC 61.520 72.222 0.00 0.00 0.00 4.20
57 58 3.121030 ATCAACGGTCGCAGCTGC 61.121 61.111 29.12 29.12 37.78 5.25
59 60 3.121030 GCATCAACGGTCGCAGCT 61.121 61.111 0.00 0.00 0.00 4.24
61 62 1.086067 ATCAGCATCAACGGTCGCAG 61.086 55.000 0.00 0.00 0.00 5.18
62 63 1.079197 ATCAGCATCAACGGTCGCA 60.079 52.632 0.00 0.00 0.00 5.10
63 64 1.349627 CATCAGCATCAACGGTCGC 59.650 57.895 0.00 0.00 0.00 5.19
64 65 0.740868 ACCATCAGCATCAACGGTCG 60.741 55.000 0.00 0.00 0.00 4.79
77 78 1.607801 CTCGCTCACCTGGACCATCA 61.608 60.000 0.00 0.00 0.00 3.07
113 114 0.716108 GAAGTTCGTCGTCATGCTGG 59.284 55.000 0.00 0.00 0.00 4.85
171 173 2.249413 CTCTCCAAGCCCAGCGATGT 62.249 60.000 0.00 0.00 0.00 3.06
198 203 4.021807 GTCCTCTTTCCTCTTCTTCGAGTT 60.022 45.833 0.00 0.00 0.00 3.01
199 204 3.508402 GTCCTCTTTCCTCTTCTTCGAGT 59.492 47.826 0.00 0.00 0.00 4.18
205 210 3.618507 CGCATTGTCCTCTTTCCTCTTCT 60.619 47.826 0.00 0.00 0.00 2.85
210 215 0.693049 ACCGCATTGTCCTCTTTCCT 59.307 50.000 0.00 0.00 0.00 3.36
215 220 1.238439 CAAACACCGCATTGTCCTCT 58.762 50.000 0.00 0.00 0.00 3.69
222 227 1.606313 CCCTCCCAAACACCGCATT 60.606 57.895 0.00 0.00 0.00 3.56
231 236 1.482177 CCAAATCCACACCCTCCCAAA 60.482 52.381 0.00 0.00 0.00 3.28
233 238 0.774096 TCCAAATCCACACCCTCCCA 60.774 55.000 0.00 0.00 0.00 4.37
241 246 3.053291 GCGCCGTCCAAATCCACA 61.053 61.111 0.00 0.00 0.00 4.17
308 325 3.874873 CGTCGCATTGAAGCAGGA 58.125 55.556 0.00 0.00 0.00 3.86
335 352 2.504367 CACATCCCGAGAAACCAACTT 58.496 47.619 0.00 0.00 0.00 2.66
352 369 1.948834 CACTTCAATGCAGACACCACA 59.051 47.619 0.00 0.00 0.00 4.17
354 371 2.221169 GTCACTTCAATGCAGACACCA 58.779 47.619 0.00 0.00 0.00 4.17
356 373 1.195448 CCGTCACTTCAATGCAGACAC 59.805 52.381 0.00 0.00 0.00 3.67
379 396 2.261671 CGGACACGACCTCTTGGG 59.738 66.667 0.00 0.00 44.60 4.12
382 402 1.163554 GTAGACGGACACGACCTCTT 58.836 55.000 0.00 0.00 44.60 2.85
413 433 2.223852 TGATATCGCGATTTGGACGGAA 60.224 45.455 28.81 5.83 0.00 4.30
417 437 3.482786 GCATTGATATCGCGATTTGGAC 58.517 45.455 28.81 14.04 0.00 4.02
418 438 2.483877 GGCATTGATATCGCGATTTGGA 59.516 45.455 28.81 9.66 0.00 3.53
444 465 2.240500 CCGGCTCGAAGCATGTAGC 61.241 63.158 8.71 0.00 44.75 3.58
445 466 2.240500 GCCGGCTCGAAGCATGTAG 61.241 63.158 22.15 0.00 44.75 2.74
447 468 3.687321 ATGCCGGCTCGAAGCATGT 62.687 57.895 29.70 0.00 45.20 3.21
448 469 2.898840 ATGCCGGCTCGAAGCATG 60.899 61.111 29.70 0.00 45.20 4.06
455 476 1.227350 TCTCATTCATGCCGGCTCG 60.227 57.895 29.70 18.68 0.00 5.03
456 477 1.493950 CGTCTCATTCATGCCGGCTC 61.494 60.000 29.70 0.00 0.00 4.70
457 478 1.522355 CGTCTCATTCATGCCGGCT 60.522 57.895 29.70 10.60 0.00 5.52
491 512 3.876255 TAACCCCCACTCGCCCCTT 62.876 63.158 0.00 0.00 0.00 3.95
496 538 3.007323 ACCCTAACCCCCACTCGC 61.007 66.667 0.00 0.00 0.00 5.03
499 541 2.204244 CCCACCCTAACCCCCACT 60.204 66.667 0.00 0.00 0.00 4.00
536 578 2.203788 TCCGGACTGCTCCCAAGT 60.204 61.111 0.00 0.00 31.93 3.16
564 606 2.106683 CGGAGACAAACATCGGGGC 61.107 63.158 0.00 0.00 0.00 5.80
565 607 1.449601 CCGGAGACAAACATCGGGG 60.450 63.158 0.00 0.00 37.35 5.73
566 608 2.106683 GCCGGAGACAAACATCGGG 61.107 63.158 5.05 0.00 40.88 5.14
567 609 0.673644 AAGCCGGAGACAAACATCGG 60.674 55.000 5.05 0.00 43.13 4.18
569 611 0.169009 GCAAGCCGGAGACAAACATC 59.831 55.000 5.05 0.00 0.00 3.06
570 612 1.577328 CGCAAGCCGGAGACAAACAT 61.577 55.000 5.05 0.00 0.00 2.71
572 614 1.901650 CTCGCAAGCCGGAGACAAAC 61.902 60.000 5.05 0.00 37.59 2.93
573 615 1.667830 CTCGCAAGCCGGAGACAAA 60.668 57.895 5.05 0.00 37.59 2.83
574 616 2.048222 CTCGCAAGCCGGAGACAA 60.048 61.111 5.05 0.00 37.59 3.18
575 617 2.989253 TCTCGCAAGCCGGAGACA 60.989 61.111 5.05 0.00 37.59 3.41
577 619 1.532604 TTTCTCTCGCAAGCCGGAGA 61.533 55.000 5.05 0.00 39.67 3.71
578 620 0.670546 TTTTCTCTCGCAAGCCGGAG 60.671 55.000 5.05 0.00 36.33 4.63
579 621 0.949105 GTTTTCTCTCGCAAGCCGGA 60.949 55.000 5.05 0.00 37.59 5.14
580 622 1.227999 TGTTTTCTCTCGCAAGCCGG 61.228 55.000 0.00 0.00 37.59 6.13
581 623 0.110644 GTGTTTTCTCTCGCAAGCCG 60.111 55.000 0.00 0.00 38.61 5.52
583 625 2.413371 GGATGTGTTTTCTCTCGCAAGC 60.413 50.000 0.00 0.00 37.18 4.01
584 626 2.160417 GGGATGTGTTTTCTCTCGCAAG 59.840 50.000 0.00 0.00 0.00 4.01
585 627 2.151202 GGGATGTGTTTTCTCTCGCAA 58.849 47.619 0.00 0.00 0.00 4.85
587 629 0.721718 CGGGATGTGTTTTCTCTCGC 59.278 55.000 0.00 0.00 0.00 5.03
588 630 1.993370 GTCGGGATGTGTTTTCTCTCG 59.007 52.381 0.00 0.00 0.00 4.04
589 631 2.347731 GGTCGGGATGTGTTTTCTCTC 58.652 52.381 0.00 0.00 0.00 3.20
590 632 1.337823 CGGTCGGGATGTGTTTTCTCT 60.338 52.381 0.00 0.00 0.00 3.10
591 633 1.076332 CGGTCGGGATGTGTTTTCTC 58.924 55.000 0.00 0.00 0.00 2.87
592 634 0.953960 GCGGTCGGGATGTGTTTTCT 60.954 55.000 0.00 0.00 0.00 2.52
593 635 1.231958 TGCGGTCGGGATGTGTTTTC 61.232 55.000 0.00 0.00 0.00 2.29
594 636 1.228003 TGCGGTCGGGATGTGTTTT 60.228 52.632 0.00 0.00 0.00 2.43
595 637 1.964373 GTGCGGTCGGGATGTGTTT 60.964 57.895 0.00 0.00 0.00 2.83
597 639 4.388499 GGTGCGGTCGGGATGTGT 62.388 66.667 0.00 0.00 0.00 3.72
610 652 4.830765 TGTATCGGCCTGCGGTGC 62.831 66.667 0.00 0.00 0.00 5.01
612 654 3.075005 ACTGTATCGGCCTGCGGT 61.075 61.111 0.00 0.00 0.00 5.68
613 655 2.279517 GACTGTATCGGCCTGCGG 60.280 66.667 0.00 0.00 0.00 5.69
614 656 1.299468 GAGACTGTATCGGCCTGCG 60.299 63.158 0.00 0.00 0.00 5.18
615 657 1.299468 CGAGACTGTATCGGCCTGC 60.299 63.158 16.41 0.00 36.54 4.85
616 658 0.248661 CACGAGACTGTATCGGCCTG 60.249 60.000 25.95 13.35 44.36 4.85
617 659 0.680280 ACACGAGACTGTATCGGCCT 60.680 55.000 25.95 5.28 44.36 5.19
620 662 1.471287 TCCAACACGAGACTGTATCGG 59.529 52.381 25.95 17.57 44.36 4.18
621 663 2.913777 TCCAACACGAGACTGTATCG 57.086 50.000 21.72 21.72 45.54 2.92
622 664 4.106197 GTCATCCAACACGAGACTGTATC 58.894 47.826 0.00 0.00 0.00 2.24
625 667 1.964223 AGTCATCCAACACGAGACTGT 59.036 47.619 0.00 0.00 38.08 3.55
626 668 2.732412 AGTCATCCAACACGAGACTG 57.268 50.000 0.00 0.00 38.08 3.51
627 669 3.322254 AGAAAGTCATCCAACACGAGACT 59.678 43.478 0.00 0.00 40.99 3.24
629 671 3.611766 CGAGAAAGTCATCCAACACGAGA 60.612 47.826 0.00 0.00 0.00 4.04
630 672 2.663602 CGAGAAAGTCATCCAACACGAG 59.336 50.000 0.00 0.00 0.00 4.18
632 674 2.672714 TCGAGAAAGTCATCCAACACG 58.327 47.619 0.00 0.00 0.00 4.49
633 675 3.619038 GGATCGAGAAAGTCATCCAACAC 59.381 47.826 0.00 0.00 34.98 3.32
635 677 2.860735 CGGATCGAGAAAGTCATCCAAC 59.139 50.000 0.00 0.00 34.74 3.77
636 678 2.159099 CCGGATCGAGAAAGTCATCCAA 60.159 50.000 0.00 0.00 34.74 3.53
638 680 1.681793 TCCGGATCGAGAAAGTCATCC 59.318 52.381 0.00 0.00 33.10 3.51
639 681 2.099263 TGTCCGGATCGAGAAAGTCATC 59.901 50.000 7.81 0.00 0.00 2.92
640 682 2.099921 CTGTCCGGATCGAGAAAGTCAT 59.900 50.000 7.81 0.00 0.00 3.06
641 683 1.472878 CTGTCCGGATCGAGAAAGTCA 59.527 52.381 7.81 0.00 0.00 3.41
642 684 1.799548 GCTGTCCGGATCGAGAAAGTC 60.800 57.143 7.81 0.00 0.00 3.01
643 685 0.173708 GCTGTCCGGATCGAGAAAGT 59.826 55.000 7.81 0.00 0.00 2.66
644 686 0.867753 CGCTGTCCGGATCGAGAAAG 60.868 60.000 7.81 0.00 0.00 2.62
645 687 1.138883 CGCTGTCCGGATCGAGAAA 59.861 57.895 7.81 0.00 0.00 2.52
646 688 2.798689 CGCTGTCCGGATCGAGAA 59.201 61.111 7.81 0.00 0.00 2.87
647 689 3.889044 GCGCTGTCCGGATCGAGA 61.889 66.667 22.21 0.03 37.44 4.04
656 698 2.813908 ATTCGAACCGCGCTGTCC 60.814 61.111 4.51 0.00 40.61 4.02
658 700 2.048597 TCATTCGAACCGCGCTGT 60.049 55.556 5.56 0.69 40.61 4.40
659 701 1.351430 TTCTCATTCGAACCGCGCTG 61.351 55.000 5.56 0.00 40.61 5.18
660 702 1.078759 CTTCTCATTCGAACCGCGCT 61.079 55.000 5.56 0.00 40.61 5.92
661 703 1.345176 CTTCTCATTCGAACCGCGC 59.655 57.895 0.00 0.00 40.61 6.86
662 704 0.736325 ACCTTCTCATTCGAACCGCG 60.736 55.000 0.00 0.00 42.69 6.46
663 705 1.439679 AACCTTCTCATTCGAACCGC 58.560 50.000 0.00 0.00 0.00 5.68
664 706 5.390567 CCTTTAAACCTTCTCATTCGAACCG 60.391 44.000 0.00 0.00 0.00 4.44
665 707 5.472478 ACCTTTAAACCTTCTCATTCGAACC 59.528 40.000 0.00 0.00 0.00 3.62
666 708 6.555812 ACCTTTAAACCTTCTCATTCGAAC 57.444 37.500 0.00 0.00 0.00 3.95
667 709 5.407387 CGACCTTTAAACCTTCTCATTCGAA 59.593 40.000 0.00 0.00 0.00 3.71
668 710 4.927425 CGACCTTTAAACCTTCTCATTCGA 59.073 41.667 0.00 0.00 0.00 3.71
670 712 4.142665 GCCGACCTTTAAACCTTCTCATTC 60.143 45.833 0.00 0.00 0.00 2.67
671 713 3.756963 GCCGACCTTTAAACCTTCTCATT 59.243 43.478 0.00 0.00 0.00 2.57
672 714 3.344515 GCCGACCTTTAAACCTTCTCAT 58.655 45.455 0.00 0.00 0.00 2.90
673 715 2.774687 GCCGACCTTTAAACCTTCTCA 58.225 47.619 0.00 0.00 0.00 3.27
674 716 1.730612 CGCCGACCTTTAAACCTTCTC 59.269 52.381 0.00 0.00 0.00 2.87
675 717 1.071228 ACGCCGACCTTTAAACCTTCT 59.929 47.619 0.00 0.00 0.00 2.85
676 718 1.516161 ACGCCGACCTTTAAACCTTC 58.484 50.000 0.00 0.00 0.00 3.46
678 720 1.232119 CAACGCCGACCTTTAAACCT 58.768 50.000 0.00 0.00 0.00 3.50
679 721 0.239082 CCAACGCCGACCTTTAAACC 59.761 55.000 0.00 0.00 0.00 3.27
680 722 1.196127 CTCCAACGCCGACCTTTAAAC 59.804 52.381 0.00 0.00 0.00 2.01
682 724 0.680618 TCTCCAACGCCGACCTTTAA 59.319 50.000 0.00 0.00 0.00 1.52
683 725 0.899720 ATCTCCAACGCCGACCTTTA 59.100 50.000 0.00 0.00 0.00 1.85
684 726 0.899720 TATCTCCAACGCCGACCTTT 59.100 50.000 0.00 0.00 0.00 3.11
685 727 0.175073 GTATCTCCAACGCCGACCTT 59.825 55.000 0.00 0.00 0.00 3.50
686 728 1.814527 GTATCTCCAACGCCGACCT 59.185 57.895 0.00 0.00 0.00 3.85
687 729 1.588139 CGTATCTCCAACGCCGACC 60.588 63.158 0.00 0.00 33.04 4.79
688 730 3.993103 CGTATCTCCAACGCCGAC 58.007 61.111 0.00 0.00 33.04 4.79
693 735 1.338337 AGGATCAGCGTATCTCCAACG 59.662 52.381 0.00 0.00 43.12 4.10
694 736 3.821600 TCTAGGATCAGCGTATCTCCAAC 59.178 47.826 0.00 0.00 0.00 3.77
695 737 3.821600 GTCTAGGATCAGCGTATCTCCAA 59.178 47.826 0.00 0.00 0.00 3.53
696 738 3.413327 GTCTAGGATCAGCGTATCTCCA 58.587 50.000 0.00 0.00 0.00 3.86
697 739 2.750712 GGTCTAGGATCAGCGTATCTCC 59.249 54.545 0.00 0.00 0.00 3.71
698 740 2.417239 CGGTCTAGGATCAGCGTATCTC 59.583 54.545 0.00 0.00 0.00 2.75
700 742 1.469308 CCGGTCTAGGATCAGCGTATC 59.531 57.143 0.00 0.00 0.00 2.24
702 744 0.536687 CCCGGTCTAGGATCAGCGTA 60.537 60.000 0.00 0.00 0.00 4.42
703 745 1.828660 CCCGGTCTAGGATCAGCGT 60.829 63.158 0.00 0.00 0.00 5.07
704 746 0.896019 ATCCCGGTCTAGGATCAGCG 60.896 60.000 0.00 0.00 40.17 5.18
705 747 2.096248 CTATCCCGGTCTAGGATCAGC 58.904 57.143 0.00 0.00 43.26 4.26
706 748 3.443145 ACTATCCCGGTCTAGGATCAG 57.557 52.381 0.00 0.00 43.26 2.90
707 749 3.764218 GAACTATCCCGGTCTAGGATCA 58.236 50.000 0.00 0.00 43.26 2.92
708 750 2.748532 CGAACTATCCCGGTCTAGGATC 59.251 54.545 0.00 3.58 43.26 3.36
710 752 1.492176 ACGAACTATCCCGGTCTAGGA 59.508 52.381 0.00 0.00 37.93 2.94
711 753 1.978454 ACGAACTATCCCGGTCTAGG 58.022 55.000 0.00 0.00 0.00 3.02
712 754 4.382345 AAAACGAACTATCCCGGTCTAG 57.618 45.455 0.00 3.17 0.00 2.43
713 755 4.202050 GCTAAAACGAACTATCCCGGTCTA 60.202 45.833 0.00 0.00 0.00 2.59
715 757 2.862536 GCTAAAACGAACTATCCCGGTC 59.137 50.000 0.00 0.00 0.00 4.79
717 759 2.896168 TGCTAAAACGAACTATCCCGG 58.104 47.619 0.00 0.00 0.00 5.73
718 760 3.063045 GGTTGCTAAAACGAACTATCCCG 59.937 47.826 0.00 0.00 0.00 5.14
719 761 4.004982 TGGTTGCTAAAACGAACTATCCC 58.995 43.478 0.00 0.00 0.00 3.85
720 762 4.142752 GGTGGTTGCTAAAACGAACTATCC 60.143 45.833 0.00 0.00 0.00 2.59
721 763 4.435121 CGGTGGTTGCTAAAACGAACTATC 60.435 45.833 0.00 0.00 0.00 2.08
722 764 3.434299 CGGTGGTTGCTAAAACGAACTAT 59.566 43.478 0.00 0.00 0.00 2.12
723 765 2.801679 CGGTGGTTGCTAAAACGAACTA 59.198 45.455 0.00 0.00 0.00 2.24
725 767 1.598601 TCGGTGGTTGCTAAAACGAAC 59.401 47.619 0.00 0.00 0.00 3.95
726 768 1.598601 GTCGGTGGTTGCTAAAACGAA 59.401 47.619 0.00 0.00 0.00 3.85
729 771 0.236449 CCGTCGGTGGTTGCTAAAAC 59.764 55.000 2.08 0.00 0.00 2.43
731 773 1.301874 CCCGTCGGTGGTTGCTAAA 60.302 57.895 11.06 0.00 0.00 1.85
732 774 1.756408 TTCCCGTCGGTGGTTGCTAA 61.756 55.000 11.06 0.00 0.00 3.09
734 776 3.530910 CTTCCCGTCGGTGGTTGCT 62.531 63.158 11.06 0.00 0.00 3.91
756 798 1.762419 TCTCTACAACAACGTCGCAC 58.238 50.000 0.00 0.00 0.00 5.34
757 799 2.495409 TTCTCTACAACAACGTCGCA 57.505 45.000 0.00 0.00 0.00 5.10
758 800 3.847037 TTTTCTCTACAACAACGTCGC 57.153 42.857 0.00 0.00 0.00 5.19
759 801 5.969741 TCATTTTTCTCTACAACAACGTCG 58.030 37.500 0.00 0.00 0.00 5.12
761 803 7.548196 TTCTCATTTTTCTCTACAACAACGT 57.452 32.000 0.00 0.00 0.00 3.99
762 804 8.835467 TTTTCTCATTTTTCTCTACAACAACG 57.165 30.769 0.00 0.00 0.00 4.10
794 2622 2.030562 CCAGACGCGTGGAAACCT 59.969 61.111 20.70 2.40 40.44 3.50
855 2683 1.067706 CAATCAACAATGCGCTGGGAA 60.068 47.619 9.73 0.00 0.00 3.97
989 2921 0.111253 GGGATTCATGGCGGGATCTT 59.889 55.000 0.00 0.00 0.00 2.40
1022 2954 0.399806 GAAGCAGAGGAGGGAGGGAT 60.400 60.000 0.00 0.00 0.00 3.85
1071 3167 1.135373 TCTCGTCTCAGCCTAAAAGCG 60.135 52.381 0.00 0.00 38.01 4.68
1138 3238 3.057734 AGAAGAAGAAACGCGACGATTT 58.942 40.909 15.93 1.61 0.00 2.17
1161 3265 0.320374 AGACGCGATCCAGACCAAAA 59.680 50.000 15.93 0.00 0.00 2.44
1162 3266 1.135199 GTAGACGCGATCCAGACCAAA 60.135 52.381 15.93 0.00 0.00 3.28
1180 3284 0.322322 AACGTTGCATTCCCCTCGTA 59.678 50.000 0.00 0.00 0.00 3.43
1181 3285 0.953960 GAACGTTGCATTCCCCTCGT 60.954 55.000 5.00 0.00 0.00 4.18
1212 3319 8.921670 GCGTCAAATTTCACCTAATTTAAACAT 58.078 29.630 0.00 0.00 35.98 2.71
1236 3344 0.248054 ACACAGCAAACAAGTTCGCG 60.248 50.000 0.00 0.00 0.00 5.87
1242 3350 1.066002 CAGGTCCACACAGCAAACAAG 59.934 52.381 0.00 0.00 0.00 3.16
1244 3352 0.034574 ACAGGTCCACACAGCAAACA 60.035 50.000 0.00 0.00 0.00 2.83
1282 3390 5.876357 ACCAAGCAAGAAAAGGTACATCTA 58.124 37.500 0.00 0.00 0.00 1.98
1283 3391 4.729868 ACCAAGCAAGAAAAGGTACATCT 58.270 39.130 0.00 0.00 0.00 2.90
1285 3393 3.502211 CGACCAAGCAAGAAAAGGTACAT 59.498 43.478 0.00 0.00 31.57 2.29
1286 3394 2.875933 CGACCAAGCAAGAAAAGGTACA 59.124 45.455 0.00 0.00 31.57 2.90
1287 3395 2.876550 ACGACCAAGCAAGAAAAGGTAC 59.123 45.455 0.00 0.00 31.57 3.34
1288 3396 3.202829 ACGACCAAGCAAGAAAAGGTA 57.797 42.857 0.00 0.00 31.57 3.08
1289 3397 2.052782 ACGACCAAGCAAGAAAAGGT 57.947 45.000 0.00 0.00 34.76 3.50
1290 3398 3.436700 AAACGACCAAGCAAGAAAAGG 57.563 42.857 0.00 0.00 0.00 3.11
1296 3406 4.911610 CACTAATCAAAACGACCAAGCAAG 59.088 41.667 0.00 0.00 0.00 4.01
1299 3409 4.483476 ACACTAATCAAAACGACCAAGC 57.517 40.909 0.00 0.00 0.00 4.01
1335 3446 7.339482 ACTAGTAGAAATCTGAAATCCCCAAC 58.661 38.462 3.59 0.00 0.00 3.77
1395 3518 7.978414 TCACAAAAACAGACAAAATAGCAATCA 59.022 29.630 0.00 0.00 0.00 2.57
1396 3519 8.351495 TCACAAAAACAGACAAAATAGCAATC 57.649 30.769 0.00 0.00 0.00 2.67
1397 3520 8.715191 TTCACAAAAACAGACAAAATAGCAAT 57.285 26.923 0.00 0.00 0.00 3.56
1399 3522 8.715191 AATTCACAAAAACAGACAAAATAGCA 57.285 26.923 0.00 0.00 0.00 3.49
1406 3529 9.190858 GCATACATAATTCACAAAAACAGACAA 57.809 29.630 0.00 0.00 0.00 3.18
1548 3681 7.335627 CCAACCAGTATCAACAAGTAGGATAA 58.664 38.462 0.00 0.00 0.00 1.75
1583 3716 2.083774 GCAAATCCGATCAACTGACCA 58.916 47.619 0.00 0.00 0.00 4.02
1669 3825 4.905429 TGGCTGTCACAGTTATACAACAT 58.095 39.130 6.68 0.00 37.10 2.71
1670 3826 4.344359 TGGCTGTCACAGTTATACAACA 57.656 40.909 6.68 0.00 37.10 3.33
1671 3827 4.094887 CCATGGCTGTCACAGTTATACAAC 59.905 45.833 6.68 0.00 33.43 3.32
1672 3828 4.260985 CCATGGCTGTCACAGTTATACAA 58.739 43.478 6.68 0.00 33.43 2.41
1673 3829 3.370421 CCCATGGCTGTCACAGTTATACA 60.370 47.826 6.09 0.00 33.43 2.29
1674 3830 3.206150 CCCATGGCTGTCACAGTTATAC 58.794 50.000 6.09 0.00 33.43 1.47
1675 3831 2.421388 GCCCATGGCTGTCACAGTTATA 60.421 50.000 6.09 0.00 46.69 0.98
1676 3832 1.683011 GCCCATGGCTGTCACAGTTAT 60.683 52.381 6.09 0.00 46.69 1.89
1677 3833 0.322456 GCCCATGGCTGTCACAGTTA 60.322 55.000 6.09 0.00 46.69 2.24
1678 3834 1.604593 GCCCATGGCTGTCACAGTT 60.605 57.895 6.09 0.00 46.69 3.16
1679 3835 2.034687 GCCCATGGCTGTCACAGT 59.965 61.111 6.09 0.00 46.69 3.55
1689 3845 3.748048 CGAACAGTTATATCAGCCCATGG 59.252 47.826 4.14 4.14 0.00 3.66
1690 3846 3.187227 GCGAACAGTTATATCAGCCCATG 59.813 47.826 0.00 0.00 0.00 3.66
1712 5076 2.987149 CACAGTTACAGCACTAACCGAG 59.013 50.000 0.00 0.00 0.00 4.63
1791 5156 7.178712 AGCGTGTGATAGAATGTAAAATAGC 57.821 36.000 0.00 0.00 0.00 2.97
1938 8327 9.214957 TCAAGATAATAACACACAACGATTCTT 57.785 29.630 0.00 0.00 0.00 2.52
1939 8328 8.771920 TCAAGATAATAACACACAACGATTCT 57.228 30.769 0.00 0.00 0.00 2.40
1940 8329 8.869897 TCTCAAGATAATAACACACAACGATTC 58.130 33.333 0.00 0.00 0.00 2.52
2060 8462 4.020617 CCGCTTGAGCAGGGTCCA 62.021 66.667 3.65 0.00 42.21 4.02
2070 8472 1.153369 GCACATAGCTCCCGCTTGA 60.153 57.895 0.00 0.00 46.47 3.02
2152 8555 9.739276 ATTAGAATGTTAGTCTCCATCAAACAA 57.261 29.630 0.00 0.00 34.08 2.83
2181 8584 2.112815 GTAATCACTGCGGGGCCAC 61.113 63.158 4.39 0.00 0.00 5.01
2187 8590 2.672961 TGAAGAGGTAATCACTGCGG 57.327 50.000 0.00 0.00 0.00 5.69
2188 8591 2.349886 GCTTGAAGAGGTAATCACTGCG 59.650 50.000 0.00 0.00 0.00 5.18
2229 8632 0.598065 GACATGACTTGCCAACACCC 59.402 55.000 0.00 0.00 0.00 4.61
2279 8682 3.132289 AGCAAAATGGATCATGCTTGAGG 59.868 43.478 8.40 0.00 46.36 3.86
2344 8749 9.762381 AATGGTTAATTCCATGAACTACCTAAA 57.238 29.630 0.00 0.00 46.14 1.85
2385 8802 6.036470 TCTGTGAGTAATGATTCAGCTTACG 58.964 40.000 5.09 0.00 32.04 3.18
2497 8917 3.576982 AGTGACAAGTAATTCCAGACGGA 59.423 43.478 0.00 0.00 40.60 4.69
2498 8918 3.926616 AGTGACAAGTAATTCCAGACGG 58.073 45.455 0.00 0.00 0.00 4.79
2507 8927 9.113838 GATACATCCATTTGAGTGACAAGTAAT 57.886 33.333 0.00 0.00 39.77 1.89
2508 8928 8.321353 AGATACATCCATTTGAGTGACAAGTAA 58.679 33.333 0.00 0.00 39.77 2.24
2509 8929 7.851228 AGATACATCCATTTGAGTGACAAGTA 58.149 34.615 0.00 0.00 39.77 2.24
2510 8930 6.715280 AGATACATCCATTTGAGTGACAAGT 58.285 36.000 0.00 0.00 39.77 3.16
2512 8932 8.078060 TCTAGATACATCCATTTGAGTGACAA 57.922 34.615 0.00 0.00 36.65 3.18
2537 8959 8.978874 TGGATGTATCTAGCACAAAAATACAT 57.021 30.769 9.54 9.54 42.96 2.29
2538 8960 8.978874 ATGGATGTATCTAGCACAAAAATACA 57.021 30.769 1.72 1.81 37.26 2.29
2541 8963 8.970020 TCAAATGGATGTATCTAGCACAAAAAT 58.030 29.630 1.72 0.00 0.00 1.82
2542 8964 8.347004 TCAAATGGATGTATCTAGCACAAAAA 57.653 30.769 1.72 0.00 0.00 1.94
2544 8966 6.038603 GCTCAAATGGATGTATCTAGCACAAA 59.961 38.462 1.72 0.00 0.00 2.83
2545 8967 5.528690 GCTCAAATGGATGTATCTAGCACAA 59.471 40.000 1.72 0.00 0.00 3.33
2546 8968 5.059161 GCTCAAATGGATGTATCTAGCACA 58.941 41.667 0.22 0.22 0.00 4.57
2547 8969 4.151335 CGCTCAAATGGATGTATCTAGCAC 59.849 45.833 0.00 0.00 0.00 4.40
2548 8970 4.039124 TCGCTCAAATGGATGTATCTAGCA 59.961 41.667 0.00 0.00 0.00 3.49
2674 9763 8.055279 TGCCAAGAGAGTCAAAATATTAAAGG 57.945 34.615 0.00 0.00 0.00 3.11
2709 9798 7.820578 AGTACTGATGTAACTATCCAGGTAC 57.179 40.000 0.00 0.00 44.07 3.34
2748 9837 8.709646 ACTATGCAGAAAGTAAAAGTTCTTACG 58.290 33.333 0.00 0.00 36.96 3.18
2815 9904 9.885743 CTTATTTTCTGTCAACGTTTTTGAAAG 57.114 29.630 0.00 0.00 35.57 2.62
2819 9908 7.700656 AGTCCTTATTTTCTGTCAACGTTTTTG 59.299 33.333 0.00 0.00 0.00 2.44
2825 9914 5.334105 CCACAGTCCTTATTTTCTGTCAACG 60.334 44.000 0.00 0.00 38.79 4.10
2845 9934 1.118965 TCTTTCCGTCCTGCTCCACA 61.119 55.000 0.00 0.00 0.00 4.17
2881 9970 4.514401 TCACGAGATAAGCTAGACTCACA 58.486 43.478 12.22 0.00 0.00 3.58
2920 10026 4.201822 GCATGCTTGGTTACTAGTAACAGC 60.202 45.833 35.09 33.32 45.32 4.40
3000 10106 2.945668 GTGGTCATTGGGAGAACTATGC 59.054 50.000 0.00 0.00 0.00 3.14
3038 10144 9.467258 CAACTTCAACTAACAATCATGATTTGT 57.533 29.630 18.41 15.84 0.00 2.83
3063 10169 9.500785 TTGAGTGTGTCTGTTTCATATAAATCA 57.499 29.630 0.00 0.00 0.00 2.57
3068 10174 5.867174 CGGTTGAGTGTGTCTGTTTCATATA 59.133 40.000 0.00 0.00 0.00 0.86
3074 10180 1.014352 GCGGTTGAGTGTGTCTGTTT 58.986 50.000 0.00 0.00 0.00 2.83
3114 10220 4.805219 AGAACCACAAAGTGACAACAAAC 58.195 39.130 0.00 0.00 35.23 2.93
3116 10222 4.331968 AGAGAACCACAAAGTGACAACAA 58.668 39.130 0.00 0.00 35.23 2.83
3333 10439 2.234661 TCCCTGTATCACTGCAACTGAG 59.765 50.000 0.00 0.00 0.00 3.35
3382 10489 2.970640 AGGGAGTTTGTAGAACGAAGGT 59.029 45.455 0.00 0.00 0.00 3.50
3388 10495 5.008712 CCACTGAAAAGGGAGTTTGTAGAAC 59.991 44.000 0.00 0.00 0.00 3.01
3758 10868 3.947196 TGCAGATTGTGAAGTGAACAACT 59.053 39.130 0.00 0.00 40.16 3.16
3891 11002 0.454957 CATTCAGGGCGTTCTTTGCG 60.455 55.000 0.00 0.00 0.00 4.85
3942 11053 3.596046 TGGGTCCAAACCTATCCTTGATT 59.404 43.478 0.00 0.00 45.66 2.57
3965 11076 9.606631 AGACCATCATGAATTCTAGTTTAAGTC 57.393 33.333 7.05 4.83 0.00 3.01
3977 11088 7.467267 GCACGTTAATGTAGACCATCATGAATT 60.467 37.037 0.00 0.00 31.75 2.17
3990 11101 8.129840 AGTTCATAGACTAGCACGTTAATGTAG 58.870 37.037 0.00 0.00 0.00 2.74
3993 11104 7.757097 AAGTTCATAGACTAGCACGTTAATG 57.243 36.000 0.00 0.00 0.00 1.90
4330 11443 2.022195 TCCGAGTACTATGACCAGCAC 58.978 52.381 0.00 0.00 0.00 4.40
4389 11502 5.510430 AGGAGAAAAAGGAAATCGGCTATT 58.490 37.500 0.00 0.00 0.00 1.73
4424 11537 6.029607 TCATCATATTCGCTTTCTTGTTTGC 58.970 36.000 0.00 0.00 0.00 3.68
4523 11639 5.862323 TGAAAGCATACTCGTAGTGAACTTC 59.138 40.000 0.00 0.00 0.00 3.01
4555 11671 4.037923 GGTGGTCACTTCATTGAAATGTGT 59.962 41.667 14.76 2.09 37.65 3.72
4574 11690 7.385267 TGATCAATTTTACAAATTCAGGGTGG 58.615 34.615 0.00 0.00 0.00 4.61
4729 12046 9.376075 AGAGTATAATCTAAAATGATGCATCCG 57.624 33.333 23.67 5.69 0.00 4.18
4734 12051 9.081997 CGGAGAGAGTATAATCTAAAATGATGC 57.918 37.037 2.03 0.00 0.00 3.91
4839 12157 8.037166 TGAAATCAGGGAAGATATACATGATCG 58.963 37.037 0.00 0.00 0.00 3.69
4849 12167 9.784531 GAGAAATACATGAAATCAGGGAAGATA 57.215 33.333 0.00 0.00 30.95 1.98
4852 12170 7.059156 AGGAGAAATACATGAAATCAGGGAAG 58.941 38.462 0.00 0.00 30.95 3.46
4853 12171 6.973642 AGGAGAAATACATGAAATCAGGGAA 58.026 36.000 0.00 0.00 30.95 3.97
4854 12172 6.581388 AGGAGAAATACATGAAATCAGGGA 57.419 37.500 0.00 0.00 30.95 4.20
4855 12173 6.604795 ACAAGGAGAAATACATGAAATCAGGG 59.395 38.462 0.00 0.00 30.95 4.45
4857 12175 9.605275 TCTACAAGGAGAAATACATGAAATCAG 57.395 33.333 0.00 0.00 0.00 2.90
4876 12214 6.260271 ACCGTTTCCTTTTCTTTCTCTACAAG 59.740 38.462 0.00 0.00 0.00 3.16
4899 12237 0.179000 ACATGCAATCGGGAGAGACC 59.821 55.000 0.00 0.00 45.48 3.85
4900 12238 2.890808 TACATGCAATCGGGAGAGAC 57.109 50.000 0.00 0.00 45.48 3.36
4922 12367 7.462571 AATTATTTAGGCAACGAAAGGAAGT 57.537 32.000 0.00 0.00 44.56 3.01
4931 12376 7.431084 AGCGACAAATAAATTATTTAGGCAACG 59.569 33.333 19.78 15.00 37.78 4.10
4949 12394 7.252708 TGTCTAATTCGTAGATTAGCGACAAA 58.747 34.615 9.52 0.00 41.00 2.83
4983 12428 8.055181 TGGACTATTTAGGATGAAATTCTGCTT 58.945 33.333 0.00 0.00 29.38 3.91
4995 12440 9.686683 GGCACATAATTATGGACTATTTAGGAT 57.313 33.333 25.45 1.27 38.00 3.24
5053 12498 9.261035 TCCTGATTTTCTAGTTGATACTCTCTT 57.739 33.333 0.00 0.00 35.78 2.85
5056 12501 7.418483 GCCTCCTGATTTTCTAGTTGATACTCT 60.418 40.741 0.00 0.00 35.78 3.24
5067 12512 2.431057 GGACGAGCCTCCTGATTTTCTA 59.569 50.000 0.00 0.00 0.00 2.10
5077 12522 0.971447 ACCTAACAGGACGAGCCTCC 60.971 60.000 0.00 0.00 46.97 4.30
5102 12547 0.613853 AAGGCTCCAGTACGGCAGTA 60.614 55.000 0.00 0.00 33.14 2.74
5103 12548 0.613853 TAAGGCTCCAGTACGGCAGT 60.614 55.000 0.00 0.00 33.14 4.40
5104 12549 0.103208 CTAAGGCTCCAGTACGGCAG 59.897 60.000 0.00 0.00 33.14 4.85
5105 12550 0.323999 TCTAAGGCTCCAGTACGGCA 60.324 55.000 0.00 0.00 33.14 5.69
5106 12551 0.386113 CTCTAAGGCTCCAGTACGGC 59.614 60.000 0.00 0.00 33.14 5.68
5107 12552 0.386113 GCTCTAAGGCTCCAGTACGG 59.614 60.000 0.00 0.00 0.00 4.02
5108 12553 0.386113 GGCTCTAAGGCTCCAGTACG 59.614 60.000 0.00 0.00 37.85 3.67
5132 12577 1.847088 AGGGAATGGAGGGAGTAAAGC 59.153 52.381 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.