Multiple sequence alignment - TraesCS3D01G056300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G056300 chr3D 100.000 2457 0 0 911 3367 23231083 23228627 0.000000e+00 4538
1 TraesCS3D01G056300 chr3D 85.499 1793 225 26 1025 2804 23731195 23729425 0.000000e+00 1838
2 TraesCS3D01G056300 chr3D 85.166 1355 170 12 1457 2800 23858167 23859501 0.000000e+00 1360
3 TraesCS3D01G056300 chr3D 100.000 590 0 0 1 590 23231993 23231404 0.000000e+00 1090
4 TraesCS3D01G056300 chr3D 84.152 448 46 14 994 1430 23857635 23858068 9.970000e-111 411
5 TraesCS3D01G056300 chr3D 100.000 137 0 0 3721 3857 23228273 23228137 1.780000e-63 254
6 TraesCS3D01G056300 chr3B 95.375 1946 58 15 935 2855 41016053 41014115 0.000000e+00 3066
7 TraesCS3D01G056300 chr3B 87.282 1604 192 10 1207 2804 42125438 42127035 0.000000e+00 1821
8 TraesCS3D01G056300 chr3B 85.580 1380 172 21 1430 2800 41800647 41802008 0.000000e+00 1421
9 TraesCS3D01G056300 chr3B 85.830 1355 161 13 1457 2800 42047838 42046504 0.000000e+00 1410
10 TraesCS3D01G056300 chr3B 91.477 176 7 2 2940 3114 41014070 41013902 6.440000e-58 235
11 TraesCS3D01G056300 chr3B 90.395 177 9 2 1 177 41016644 41016476 3.880000e-55 226
12 TraesCS3D01G056300 chr3A 95.829 1894 67 6 977 2861 32426192 32428082 0.000000e+00 3049
13 TraesCS3D01G056300 chr3A 87.547 1606 187 10 1207 2804 32876478 32874878 0.000000e+00 1845
14 TraesCS3D01G056300 chr3A 94.681 188 6 3 2928 3114 32428108 32428292 4.880000e-74 289
15 TraesCS3D01G056300 chr2A 84.332 1819 239 29 1001 2804 672946761 672944974 0.000000e+00 1738
16 TraesCS3D01G056300 chr2D 85.296 1673 217 18 1207 2861 528100019 528098358 0.000000e+00 1700
17 TraesCS3D01G056300 chr2D 93.431 137 9 0 3721 3857 618299850 618299714 1.820000e-48 204
18 TraesCS3D01G056300 chr2B 83.639 1852 250 39 1025 2861 626092156 626090343 0.000000e+00 1692
19 TraesCS3D01G056300 chrUn 87.072 263 31 1 1168 1430 373565520 373565261 1.050000e-75 294
20 TraesCS3D01G056300 chrUn 95.620 137 6 0 3721 3857 96290220 96290356 1.800000e-53 220
21 TraesCS3D01G056300 chrUn 93.431 137 9 0 3721 3857 59795191 59795327 1.820000e-48 204
22 TraesCS3D01G056300 chr7D 94.161 137 8 0 3721 3857 595588004 595588140 3.900000e-50 209
23 TraesCS3D01G056300 chr6D 94.203 138 7 1 3721 3857 277056715 277056578 3.900000e-50 209
24 TraesCS3D01G056300 chr1D 94.161 137 8 0 3721 3857 458393675 458393811 3.900000e-50 209
25 TraesCS3D01G056300 chr6A 93.478 138 7 2 3721 3857 24239800 24239664 1.820000e-48 204
26 TraesCS3D01G056300 chr5D 94.030 134 8 0 3721 3854 373211514 373211647 1.820000e-48 204
27 TraesCS3D01G056300 chr4D 93.431 137 9 0 3721 3857 1672011 1671875 1.820000e-48 204


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G056300 chr3D 23228137 23231993 3856 True 1960.666667 4538 100.000000 1 3857 3 chr3D.!!$R2 3856
1 TraesCS3D01G056300 chr3D 23729425 23731195 1770 True 1838.000000 1838 85.499000 1025 2804 1 chr3D.!!$R1 1779
2 TraesCS3D01G056300 chr3D 23857635 23859501 1866 False 885.500000 1360 84.659000 994 2800 2 chr3D.!!$F1 1806
3 TraesCS3D01G056300 chr3B 42125438 42127035 1597 False 1821.000000 1821 87.282000 1207 2804 1 chr3B.!!$F2 1597
4 TraesCS3D01G056300 chr3B 41800647 41802008 1361 False 1421.000000 1421 85.580000 1430 2800 1 chr3B.!!$F1 1370
5 TraesCS3D01G056300 chr3B 42046504 42047838 1334 True 1410.000000 1410 85.830000 1457 2800 1 chr3B.!!$R1 1343
6 TraesCS3D01G056300 chr3B 41013902 41016644 2742 True 1175.666667 3066 92.415667 1 3114 3 chr3B.!!$R2 3113
7 TraesCS3D01G056300 chr3A 32874878 32876478 1600 True 1845.000000 1845 87.547000 1207 2804 1 chr3A.!!$R1 1597
8 TraesCS3D01G056300 chr3A 32426192 32428292 2100 False 1669.000000 3049 95.255000 977 3114 2 chr3A.!!$F1 2137
9 TraesCS3D01G056300 chr2A 672944974 672946761 1787 True 1738.000000 1738 84.332000 1001 2804 1 chr2A.!!$R1 1803
10 TraesCS3D01G056300 chr2D 528098358 528100019 1661 True 1700.000000 1700 85.296000 1207 2861 1 chr2D.!!$R1 1654
11 TraesCS3D01G056300 chr2B 626090343 626092156 1813 True 1692.000000 1692 83.639000 1025 2861 1 chr2B.!!$R1 1836

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
344 387 0.032515 AAATCCCCCGTTGGAATCCC 60.033 55.0 0.00 0.0 38.10 3.85 F
350 393 0.107410 CCCGTTGGAATCCCGAATCA 60.107 55.0 0.00 0.0 34.29 2.57 F
982 1057 0.247894 CAGCGCGTAGTCTGAGAGAC 60.248 60.0 8.43 0.0 45.38 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1967 2165 0.670854 GTCGAGGAACCTGAACTGCC 60.671 60.000 0.0 0.0 0.00 4.85 R
2193 2391 1.916181 GAGGGGATCTTGAACTTGGGA 59.084 52.381 0.0 0.0 0.00 4.37 R
2866 3085 0.041839 CAGACACGAACTGTTGCAGC 60.042 55.000 0.0 0.0 34.37 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 2.050144 TCTCACTTCTCCTTTGCCTGT 58.950 47.619 0.00 0.00 0.00 4.00
62 63 2.037772 TCTCACTTCTCCTTTGCCTGTC 59.962 50.000 0.00 0.00 0.00 3.51
67 68 1.067295 TCTCCTTTGCCTGTCCATGT 58.933 50.000 0.00 0.00 0.00 3.21
74 75 2.885135 TGCCTGTCCATGTTCATCTT 57.115 45.000 0.00 0.00 0.00 2.40
85 86 0.389948 GTTCATCTTGCCCGACTCGT 60.390 55.000 0.00 0.00 0.00 4.18
89 90 1.532604 ATCTTGCCCGACTCGTGTCA 61.533 55.000 17.02 0.00 43.06 3.58
102 103 2.343101 TCGTGTCATTTTCCGATGGAC 58.657 47.619 0.00 0.00 0.00 4.02
132 133 2.847327 CCTGAGCAGGTATGGTATGG 57.153 55.000 8.38 0.00 43.61 2.74
133 134 2.050144 CCTGAGCAGGTATGGTATGGT 58.950 52.381 8.38 0.00 43.61 3.55
134 135 3.239449 CCTGAGCAGGTATGGTATGGTA 58.761 50.000 8.38 0.00 43.61 3.25
135 136 3.840666 CCTGAGCAGGTATGGTATGGTAT 59.159 47.826 8.38 0.00 43.61 2.73
136 137 4.323028 CCTGAGCAGGTATGGTATGGTATG 60.323 50.000 8.38 0.00 43.61 2.39
137 138 4.231273 TGAGCAGGTATGGTATGGTATGT 58.769 43.478 0.00 0.00 37.25 2.29
138 139 5.399113 TGAGCAGGTATGGTATGGTATGTA 58.601 41.667 0.00 0.00 37.25 2.29
139 140 5.245301 TGAGCAGGTATGGTATGGTATGTAC 59.755 44.000 0.00 0.00 37.25 2.90
140 141 5.403512 AGCAGGTATGGTATGGTATGTACT 58.596 41.667 0.00 0.00 34.74 2.73
141 142 6.558498 AGCAGGTATGGTATGGTATGTACTA 58.442 40.000 0.00 0.00 34.74 1.82
142 143 7.189794 AGCAGGTATGGTATGGTATGTACTAT 58.810 38.462 0.00 0.00 34.74 2.12
143 144 7.342284 AGCAGGTATGGTATGGTATGTACTATC 59.658 40.741 0.00 0.00 34.74 2.08
167 168 0.981277 TCCAACGAGAATCCCTCCCC 60.981 60.000 0.00 0.00 38.71 4.81
181 202 2.240162 CTCCCCCTTTCTTCCGTCCG 62.240 65.000 0.00 0.00 0.00 4.79
206 232 2.627945 TCCCGTGATTTGATTCTTCCG 58.372 47.619 0.00 0.00 0.00 4.30
213 239 1.821216 TTTGATTCTTCCGTGCCCTC 58.179 50.000 0.00 0.00 0.00 4.30
214 240 0.690192 TTGATTCTTCCGTGCCCTCA 59.310 50.000 0.00 0.00 0.00 3.86
217 243 1.943340 GATTCTTCCGTGCCCTCAATC 59.057 52.381 0.00 0.00 0.00 2.67
218 244 0.984230 TTCTTCCGTGCCCTCAATCT 59.016 50.000 0.00 0.00 0.00 2.40
220 246 1.372087 CTTCCGTGCCCTCAATCTGC 61.372 60.000 0.00 0.00 0.00 4.26
221 247 3.197790 CCGTGCCCTCAATCTGCG 61.198 66.667 0.00 0.00 0.00 5.18
234 277 0.904649 ATCTGCGGTGAATCTGGTGA 59.095 50.000 0.00 0.00 0.00 4.02
249 292 0.536006 GGTGACTGCCTGCTTCACTT 60.536 55.000 17.91 0.00 39.72 3.16
258 301 1.163554 CTGCTTCACTTTGAGAGGCC 58.836 55.000 0.00 0.00 0.00 5.19
259 302 0.767375 TGCTTCACTTTGAGAGGCCT 59.233 50.000 3.86 3.86 0.00 5.19
260 303 1.163554 GCTTCACTTTGAGAGGCCTG 58.836 55.000 12.00 0.00 0.00 4.85
261 304 1.271054 GCTTCACTTTGAGAGGCCTGA 60.271 52.381 12.00 0.00 0.00 3.86
262 305 2.421619 CTTCACTTTGAGAGGCCTGAC 58.578 52.381 12.00 4.02 0.00 3.51
263 306 0.687354 TCACTTTGAGAGGCCTGACC 59.313 55.000 12.00 0.00 39.61 4.02
264 307 0.397941 CACTTTGAGAGGCCTGACCA 59.602 55.000 12.00 1.22 43.14 4.02
265 308 0.398318 ACTTTGAGAGGCCTGACCAC 59.602 55.000 12.00 0.00 43.14 4.16
268 311 1.483595 TTGAGAGGCCTGACCACCTG 61.484 60.000 12.00 0.00 43.14 4.00
270 313 1.611851 AGAGGCCTGACCACCTGAG 60.612 63.158 12.00 0.00 43.14 3.35
271 314 3.322318 GAGGCCTGACCACCTGAGC 62.322 68.421 12.00 0.00 43.14 4.26
272 315 3.640407 GGCCTGACCACCTGAGCA 61.640 66.667 0.00 0.00 38.86 4.26
273 316 2.673523 GCCTGACCACCTGAGCAT 59.326 61.111 0.00 0.00 0.00 3.79
274 317 1.626356 GGCCTGACCACCTGAGCATA 61.626 60.000 0.00 0.00 38.86 3.14
275 318 0.471617 GCCTGACCACCTGAGCATAT 59.528 55.000 0.00 0.00 0.00 1.78
276 319 1.133976 GCCTGACCACCTGAGCATATT 60.134 52.381 0.00 0.00 0.00 1.28
277 320 2.569059 CCTGACCACCTGAGCATATTG 58.431 52.381 0.00 0.00 0.00 1.90
278 321 1.945394 CTGACCACCTGAGCATATTGC 59.055 52.381 0.00 0.00 45.46 3.56
292 335 4.918037 GCATATTGCTTCAGTTTGAGAGG 58.082 43.478 0.00 0.00 40.96 3.69
293 336 4.732938 GCATATTGCTTCAGTTTGAGAGGC 60.733 45.833 0.00 0.00 40.96 4.70
294 337 2.645838 TTGCTTCAGTTTGAGAGGCT 57.354 45.000 0.00 0.00 0.00 4.58
295 338 2.175878 TGCTTCAGTTTGAGAGGCTC 57.824 50.000 6.34 6.34 0.00 4.70
296 339 1.696336 TGCTTCAGTTTGAGAGGCTCT 59.304 47.619 18.80 18.80 0.00 4.09
297 340 2.289320 TGCTTCAGTTTGAGAGGCTCTC 60.289 50.000 32.72 32.72 43.65 3.20
306 349 2.228138 GAGAGGCTCTCAATCTGCAG 57.772 55.000 33.95 7.63 42.90 4.41
307 350 1.481772 GAGAGGCTCTCAATCTGCAGT 59.518 52.381 33.95 1.73 42.90 4.40
308 351 1.207570 AGAGGCTCTCAATCTGCAGTG 59.792 52.381 12.24 5.73 32.06 3.66
309 352 0.392729 AGGCTCTCAATCTGCAGTGC 60.393 55.000 14.67 8.58 0.00 4.40
310 353 0.392729 GGCTCTCAATCTGCAGTGCT 60.393 55.000 17.60 0.00 31.24 4.40
311 354 1.008329 GCTCTCAATCTGCAGTGCTC 58.992 55.000 17.60 0.00 0.00 4.26
319 362 2.505650 TCTGCAGTGCTCTCTCTAGT 57.494 50.000 17.60 0.00 0.00 2.57
337 380 0.243636 GTTCTGCAAATCCCCCGTTG 59.756 55.000 0.00 0.00 0.00 4.10
341 384 0.252012 TGCAAATCCCCCGTTGGAAT 60.252 50.000 0.00 0.00 38.10 3.01
342 385 0.459899 GCAAATCCCCCGTTGGAATC 59.540 55.000 0.00 0.00 38.10 2.52
343 386 1.111277 CAAATCCCCCGTTGGAATCC 58.889 55.000 0.00 0.00 38.10 3.01
344 387 0.032515 AAATCCCCCGTTGGAATCCC 60.033 55.000 0.00 0.00 38.10 3.85
345 388 2.279037 AATCCCCCGTTGGAATCCCG 62.279 60.000 0.00 0.00 38.10 5.14
348 391 1.226262 CCCCGTTGGAATCCCGAAT 59.774 57.895 0.00 0.00 35.39 3.34
349 392 0.818040 CCCCGTTGGAATCCCGAATC 60.818 60.000 0.00 0.00 35.39 2.52
350 393 0.107410 CCCGTTGGAATCCCGAATCA 60.107 55.000 0.00 0.00 34.29 2.57
351 394 1.299541 CCGTTGGAATCCCGAATCAG 58.700 55.000 0.00 0.00 34.29 2.90
352 395 0.657840 CGTTGGAATCCCGAATCAGC 59.342 55.000 0.00 0.00 34.29 4.26
356 402 1.151668 GGAATCCCGAATCAGCATCG 58.848 55.000 0.00 0.00 39.92 3.84
370 416 1.599047 CATCGGTTCTCCACTGGCT 59.401 57.895 0.00 0.00 31.75 4.75
372 418 1.903877 ATCGGTTCTCCACTGGCTGG 61.904 60.000 0.00 0.00 42.29 4.85
394 440 3.983044 ACTCGATTTGGGTCTAAAGCT 57.017 42.857 0.00 0.00 0.00 3.74
412 458 2.583593 GAGGCTGCCGCGTCTTAG 60.584 66.667 13.96 0.00 45.14 2.18
421 467 1.918609 GCCGCGTCTTAGTAGTTTCTG 59.081 52.381 4.92 0.00 0.00 3.02
422 468 1.918609 CCGCGTCTTAGTAGTTTCTGC 59.081 52.381 4.92 0.00 0.00 4.26
431 492 6.004574 TCTTAGTAGTTTCTGCTCTGTCTGA 58.995 40.000 0.00 0.00 0.00 3.27
432 493 6.661377 TCTTAGTAGTTTCTGCTCTGTCTGAT 59.339 38.462 0.00 0.00 0.00 2.90
441 502 3.405831 TGCTCTGTCTGATTGTTCTTGG 58.594 45.455 0.00 0.00 0.00 3.61
460 521 3.733337 TGGTTTGCAATTAACGCCATTT 58.267 36.364 0.00 0.00 0.00 2.32
462 523 3.181535 GGTTTGCAATTAACGCCATTTCG 60.182 43.478 0.00 0.00 0.00 3.46
463 524 2.999507 TGCAATTAACGCCATTTCGT 57.000 40.000 0.00 0.00 45.58 3.85
472 533 3.915437 ACGCCATTTCGTTGAGATTTT 57.085 38.095 0.00 0.00 40.07 1.82
474 535 5.560966 ACGCCATTTCGTTGAGATTTTAT 57.439 34.783 0.00 0.00 40.07 1.40
475 536 5.949735 ACGCCATTTCGTTGAGATTTTATT 58.050 33.333 0.00 0.00 40.07 1.40
476 537 7.079182 ACGCCATTTCGTTGAGATTTTATTA 57.921 32.000 0.00 0.00 40.07 0.98
477 538 7.703328 ACGCCATTTCGTTGAGATTTTATTAT 58.297 30.769 0.00 0.00 40.07 1.28
478 539 7.855904 ACGCCATTTCGTTGAGATTTTATTATC 59.144 33.333 0.00 0.00 40.07 1.75
479 540 7.323656 CGCCATTTCGTTGAGATTTTATTATCC 59.676 37.037 0.00 0.00 0.00 2.59
480 541 8.134895 GCCATTTCGTTGAGATTTTATTATCCA 58.865 33.333 0.00 0.00 0.00 3.41
485 546 8.972458 TCGTTGAGATTTTATTATCCAATCCA 57.028 30.769 0.00 0.00 0.00 3.41
486 547 9.402320 TCGTTGAGATTTTATTATCCAATCCAA 57.598 29.630 0.00 0.00 0.00 3.53
495 556 8.945481 TTTATTATCCAATCCAAAAGCATGTG 57.055 30.769 0.00 0.00 0.00 3.21
496 557 3.899052 ATCCAATCCAAAAGCATGTGG 57.101 42.857 0.00 0.00 36.13 4.17
497 558 1.275856 TCCAATCCAAAAGCATGTGGC 59.724 47.619 0.00 0.00 45.30 5.01
511 572 3.753272 GCATGTGGCTCTTCTTGTTAAGA 59.247 43.478 0.00 0.00 40.25 2.10
514 575 6.549952 CATGTGGCTCTTCTTGTTAAGATTC 58.450 40.000 0.00 0.00 37.38 2.52
522 583 9.766277 GCTCTTCTTGTTAAGATTCATTACAAG 57.234 33.333 12.26 12.26 37.38 3.16
525 586 9.766277 CTTCTTGTTAAGATTCATTACAAGCTC 57.234 33.333 13.21 0.00 37.38 4.09
529 590 6.092122 TGTTAAGATTCATTACAAGCTCCACG 59.908 38.462 0.00 0.00 0.00 4.94
530 591 4.207891 AGATTCATTACAAGCTCCACGT 57.792 40.909 0.00 0.00 0.00 4.49
533 594 6.170506 AGATTCATTACAAGCTCCACGTTAA 58.829 36.000 0.00 0.00 0.00 2.01
538 599 6.257849 TCATTACAAGCTCCACGTTAATCATC 59.742 38.462 0.00 0.00 0.00 2.92
539 600 3.270877 ACAAGCTCCACGTTAATCATCC 58.729 45.455 0.00 0.00 0.00 3.51
540 601 3.270027 CAAGCTCCACGTTAATCATCCA 58.730 45.455 0.00 0.00 0.00 3.41
557 618 2.582052 TCCACAACAACAATCTGTCCC 58.418 47.619 0.00 0.00 0.00 4.46
559 620 1.613437 CACAACAACAATCTGTCCCCC 59.387 52.381 0.00 0.00 0.00 5.40
569 630 1.002069 TCTGTCCCCCATTGCATCTT 58.998 50.000 0.00 0.00 0.00 2.40
574 635 0.324552 CCCCCATTGCATCTTCACCA 60.325 55.000 0.00 0.00 0.00 4.17
579 640 3.346315 CCATTGCATCTTCACCACACTA 58.654 45.455 0.00 0.00 0.00 2.74
973 1034 3.414700 GTTGCTGCAGCGCGTAGT 61.415 61.111 32.11 0.00 45.83 2.73
980 1055 1.585002 GCAGCGCGTAGTCTGAGAG 60.585 63.158 14.49 0.00 32.26 3.20
982 1057 0.247894 CAGCGCGTAGTCTGAGAGAC 60.248 60.000 8.43 0.00 45.38 3.36
1182 1287 1.169661 TTCTTGGCGTTCATGGCGTT 61.170 50.000 11.10 0.00 37.19 4.84
1205 1310 0.598065 AAGCTGTTTGATTGACCGGC 59.402 50.000 0.00 0.00 0.00 6.13
1584 1770 2.514824 GGGATCAAGCCCTGCGTC 60.515 66.667 0.00 0.00 45.12 5.19
1967 2165 3.052082 CAAGCTGGAGCACACGGG 61.052 66.667 0.65 0.00 45.16 5.28
2193 2391 3.402681 CTGGACGCCTCCATGGGT 61.403 66.667 13.02 0.62 46.18 4.51
2670 2868 3.655211 ACCAGGGGAGGCAAGCAG 61.655 66.667 0.00 0.00 0.00 4.24
2861 3080 1.151668 GCACATGACCAGTGAGTGAC 58.848 55.000 0.00 0.00 39.30 3.67
2863 3082 2.681706 CACATGACCAGTGAGTGACTC 58.318 52.381 5.47 5.47 39.30 3.36
2864 3083 2.298446 CACATGACCAGTGAGTGACTCT 59.702 50.000 14.42 0.00 39.30 3.24
2865 3084 2.298446 ACATGACCAGTGAGTGACTCTG 59.702 50.000 14.42 4.53 39.10 3.35
2871 3090 1.117749 AGTGAGTGACTCTGGCTGCA 61.118 55.000 14.42 0.00 0.00 4.41
2872 3091 0.250038 GTGAGTGACTCTGGCTGCAA 60.250 55.000 14.42 0.00 0.00 4.08
2873 3092 0.250038 TGAGTGACTCTGGCTGCAAC 60.250 55.000 14.42 0.00 0.00 4.17
2874 3093 0.250038 GAGTGACTCTGGCTGCAACA 60.250 55.000 5.12 0.00 0.00 3.33
2878 3098 0.871057 GACTCTGGCTGCAACAGTTC 59.129 55.000 15.35 10.58 37.25 3.01
2883 3103 1.279840 GGCTGCAACAGTTCGTGTC 59.720 57.895 0.50 0.00 39.03 3.67
2890 3110 2.908634 CAACAGTTCGTGTCTGAATGC 58.091 47.619 10.09 0.00 39.03 3.56
2891 3111 1.139989 ACAGTTCGTGTCTGAATGCG 58.860 50.000 10.09 0.00 31.90 4.73
2892 3112 1.139989 CAGTTCGTGTCTGAATGCGT 58.860 50.000 0.00 0.00 35.20 5.24
2893 3113 1.136529 CAGTTCGTGTCTGAATGCGTG 60.137 52.381 0.00 0.00 35.20 5.34
2894 3114 0.451135 GTTCGTGTCTGAATGCGTGC 60.451 55.000 0.00 0.00 0.00 5.34
2895 3115 1.885814 TTCGTGTCTGAATGCGTGCG 61.886 55.000 0.00 0.00 0.00 5.34
2896 3116 2.657757 CGTGTCTGAATGCGTGCGT 61.658 57.895 0.00 0.00 0.00 5.24
2897 3117 1.154599 GTGTCTGAATGCGTGCGTG 60.155 57.895 0.00 0.00 0.00 5.34
2898 3118 1.594021 TGTCTGAATGCGTGCGTGT 60.594 52.632 0.00 0.00 0.00 4.49
2899 3119 1.157257 TGTCTGAATGCGTGCGTGTT 61.157 50.000 0.00 0.00 0.00 3.32
2900 3120 0.041312 GTCTGAATGCGTGCGTGTTT 60.041 50.000 0.00 0.00 0.00 2.83
2901 3121 0.660488 TCTGAATGCGTGCGTGTTTT 59.340 45.000 0.00 0.00 0.00 2.43
2902 3122 1.044725 CTGAATGCGTGCGTGTTTTC 58.955 50.000 0.00 0.00 0.00 2.29
2903 3123 0.660488 TGAATGCGTGCGTGTTTTCT 59.340 45.000 0.00 0.00 0.00 2.52
2904 3124 1.064803 TGAATGCGTGCGTGTTTTCTT 59.935 42.857 0.00 0.00 0.00 2.52
2905 3125 2.116366 GAATGCGTGCGTGTTTTCTTT 58.884 42.857 0.00 0.00 0.00 2.52
2906 3126 2.202295 ATGCGTGCGTGTTTTCTTTT 57.798 40.000 0.00 0.00 0.00 2.27
2907 3127 1.983972 TGCGTGCGTGTTTTCTTTTT 58.016 40.000 0.00 0.00 0.00 1.94
2908 3128 1.914700 TGCGTGCGTGTTTTCTTTTTC 59.085 42.857 0.00 0.00 0.00 2.29
2909 3129 1.914700 GCGTGCGTGTTTTCTTTTTCA 59.085 42.857 0.00 0.00 0.00 2.69
2910 3130 2.342948 GCGTGCGTGTTTTCTTTTTCAA 59.657 40.909 0.00 0.00 0.00 2.69
2911 3131 3.539401 GCGTGCGTGTTTTCTTTTTCAAG 60.539 43.478 0.00 0.00 0.00 3.02
2912 3132 3.849145 CGTGCGTGTTTTCTTTTTCAAGA 59.151 39.130 0.00 0.00 37.24 3.02
2913 3133 4.028509 CGTGCGTGTTTTCTTTTTCAAGAG 60.029 41.667 0.00 0.00 40.28 2.85
2914 3134 5.092781 GTGCGTGTTTTCTTTTTCAAGAGA 58.907 37.500 0.00 0.00 40.28 3.10
2915 3135 5.003496 GTGCGTGTTTTCTTTTTCAAGAGAC 59.997 40.000 0.00 0.00 40.28 3.36
2916 3136 5.092781 GCGTGTTTTCTTTTTCAAGAGACA 58.907 37.500 0.00 0.00 40.28 3.41
2917 3137 5.743872 GCGTGTTTTCTTTTTCAAGAGACAT 59.256 36.000 6.56 0.00 40.28 3.06
2918 3138 6.291269 GCGTGTTTTCTTTTTCAAGAGACATG 60.291 38.462 13.27 13.27 40.28 3.21
2919 3139 6.966632 CGTGTTTTCTTTTTCAAGAGACATGA 59.033 34.615 0.00 0.00 41.22 3.07
2920 3140 7.044706 CGTGTTTTCTTTTTCAAGAGACATGAC 60.045 37.037 0.00 0.00 41.22 3.06
2921 3141 7.754924 GTGTTTTCTTTTTCAAGAGACATGACA 59.245 33.333 0.00 0.00 40.28 3.58
2922 3142 7.970061 TGTTTTCTTTTTCAAGAGACATGACAG 59.030 33.333 0.00 0.00 40.28 3.51
2923 3143 7.864108 TTTCTTTTTCAAGAGACATGACAGA 57.136 32.000 0.00 0.00 40.28 3.41
2924 3144 7.864108 TTCTTTTTCAAGAGACATGACAGAA 57.136 32.000 0.00 0.00 40.28 3.02
2925 3145 8.455903 TTCTTTTTCAAGAGACATGACAGAAT 57.544 30.769 0.00 0.00 40.28 2.40
2926 3146 9.559732 TTCTTTTTCAAGAGACATGACAGAATA 57.440 29.630 0.00 0.00 40.28 1.75
2927 3147 9.212641 TCTTTTTCAAGAGACATGACAGAATAG 57.787 33.333 0.00 0.00 33.80 1.73
2928 3148 9.212641 CTTTTTCAAGAGACATGACAGAATAGA 57.787 33.333 0.00 0.00 30.57 1.98
2929 3149 9.730705 TTTTTCAAGAGACATGACAGAATAGAT 57.269 29.630 0.00 0.00 0.00 1.98
2930 3150 9.730705 TTTTCAAGAGACATGACAGAATAGATT 57.269 29.630 0.00 0.00 0.00 2.40
2931 3151 8.713737 TTCAAGAGACATGACAGAATAGATTG 57.286 34.615 0.00 0.00 0.00 2.67
2932 3152 7.845037 TCAAGAGACATGACAGAATAGATTGT 58.155 34.615 0.00 0.00 0.00 2.71
2933 3153 8.316946 TCAAGAGACATGACAGAATAGATTGTT 58.683 33.333 0.00 0.00 0.00 2.83
2934 3154 8.388853 CAAGAGACATGACAGAATAGATTGTTG 58.611 37.037 0.00 0.00 0.00 3.33
2935 3155 7.845037 AGAGACATGACAGAATAGATTGTTGA 58.155 34.615 0.00 0.00 0.00 3.18
2936 3156 8.316946 AGAGACATGACAGAATAGATTGTTGAA 58.683 33.333 0.00 0.00 0.00 2.69
2937 3157 8.853077 AGACATGACAGAATAGATTGTTGAAA 57.147 30.769 0.00 0.00 0.00 2.69
2938 3158 8.944029 AGACATGACAGAATAGATTGTTGAAAG 58.056 33.333 0.00 0.00 0.00 2.62
2962 3182 6.654582 AGAAGAAGAAGAAGAAAGCAAGGATC 59.345 38.462 0.00 0.00 0.00 3.36
3012 3232 1.755179 AGGGAGGACAATGAAATGCG 58.245 50.000 0.00 0.00 0.00 4.73
3130 3351 9.931210 GTTATGTACTTTATTAGATTGGTGTGC 57.069 33.333 0.00 0.00 0.00 4.57
3131 3352 9.674068 TTATGTACTTTATTAGATTGGTGTGCA 57.326 29.630 0.00 0.00 0.00 4.57
3132 3353 7.987750 TGTACTTTATTAGATTGGTGTGCAA 57.012 32.000 0.00 0.00 0.00 4.08
3133 3354 8.574251 TGTACTTTATTAGATTGGTGTGCAAT 57.426 30.769 0.00 0.00 0.00 3.56
3134 3355 8.458052 TGTACTTTATTAGATTGGTGTGCAATG 58.542 33.333 0.00 0.00 0.00 2.82
3135 3356 6.332630 ACTTTATTAGATTGGTGTGCAATGC 58.667 36.000 0.00 0.00 0.00 3.56
3136 3357 2.917701 TTAGATTGGTGTGCAATGCG 57.082 45.000 0.00 0.00 0.00 4.73
3137 3358 2.106477 TAGATTGGTGTGCAATGCGA 57.894 45.000 0.00 0.00 0.00 5.10
3138 3359 0.523072 AGATTGGTGTGCAATGCGAC 59.477 50.000 0.00 0.00 0.00 5.19
3139 3360 0.456653 GATTGGTGTGCAATGCGACC 60.457 55.000 16.65 16.65 35.19 4.79
3140 3361 1.876497 ATTGGTGTGCAATGCGACCC 61.876 55.000 19.56 10.87 34.14 4.46
3141 3362 2.983030 GGTGTGCAATGCGACCCA 60.983 61.111 13.53 0.00 30.40 4.51
3142 3363 2.560119 GGTGTGCAATGCGACCCAA 61.560 57.895 13.53 0.00 30.40 4.12
3143 3364 1.361993 GTGTGCAATGCGACCCAAA 59.638 52.632 0.00 0.00 0.00 3.28
3144 3365 0.664166 GTGTGCAATGCGACCCAAAG 60.664 55.000 0.00 0.00 0.00 2.77
3145 3366 1.734117 GTGCAATGCGACCCAAAGC 60.734 57.895 0.00 0.00 0.00 3.51
3146 3367 1.902918 TGCAATGCGACCCAAAGCT 60.903 52.632 0.00 0.00 0.00 3.74
3147 3368 1.290009 GCAATGCGACCCAAAGCTT 59.710 52.632 0.00 0.00 0.00 3.74
3148 3369 0.733909 GCAATGCGACCCAAAGCTTC 60.734 55.000 0.00 0.00 0.00 3.86
3149 3370 0.883833 CAATGCGACCCAAAGCTTCT 59.116 50.000 0.00 0.00 0.00 2.85
3150 3371 2.083774 CAATGCGACCCAAAGCTTCTA 58.916 47.619 0.00 0.00 0.00 2.10
3151 3372 1.739067 ATGCGACCCAAAGCTTCTAC 58.261 50.000 0.00 0.00 0.00 2.59
3152 3373 0.394938 TGCGACCCAAAGCTTCTACA 59.605 50.000 0.00 0.00 0.00 2.74
3153 3374 1.079503 GCGACCCAAAGCTTCTACAG 58.920 55.000 0.00 0.00 0.00 2.74
3154 3375 1.608283 GCGACCCAAAGCTTCTACAGT 60.608 52.381 0.00 0.00 0.00 3.55
3155 3376 2.069273 CGACCCAAAGCTTCTACAGTG 58.931 52.381 0.00 0.00 0.00 3.66
3156 3377 2.288825 CGACCCAAAGCTTCTACAGTGA 60.289 50.000 0.00 0.00 0.00 3.41
3157 3378 3.067833 GACCCAAAGCTTCTACAGTGAC 58.932 50.000 0.00 0.00 0.00 3.67
3158 3379 2.438021 ACCCAAAGCTTCTACAGTGACA 59.562 45.455 0.00 0.00 0.00 3.58
3159 3380 3.070018 CCCAAAGCTTCTACAGTGACAG 58.930 50.000 0.00 0.00 0.00 3.51
3160 3381 3.495100 CCCAAAGCTTCTACAGTGACAGT 60.495 47.826 0.00 0.00 0.00 3.55
3161 3382 3.496130 CCAAAGCTTCTACAGTGACAGTG 59.504 47.826 8.80 8.80 0.00 3.66
3162 3383 4.371786 CAAAGCTTCTACAGTGACAGTGA 58.628 43.478 17.24 0.34 0.00 3.41
3163 3384 3.932545 AGCTTCTACAGTGACAGTGAG 57.067 47.619 17.24 9.71 0.00 3.51
3164 3385 2.029470 AGCTTCTACAGTGACAGTGAGC 60.029 50.000 17.24 14.13 0.00 4.26
3165 3386 2.288457 GCTTCTACAGTGACAGTGAGCA 60.288 50.000 17.24 1.20 0.00 4.26
3166 3387 3.573598 CTTCTACAGTGACAGTGAGCAG 58.426 50.000 17.24 10.27 0.00 4.24
3167 3388 2.863809 TCTACAGTGACAGTGAGCAGA 58.136 47.619 17.24 12.18 0.00 4.26
3168 3389 3.222603 TCTACAGTGACAGTGAGCAGAA 58.777 45.455 17.24 0.27 0.00 3.02
3169 3390 2.988010 ACAGTGACAGTGAGCAGAAA 57.012 45.000 17.24 0.00 0.00 2.52
3170 3391 3.266510 ACAGTGACAGTGAGCAGAAAA 57.733 42.857 17.24 0.00 0.00 2.29
3171 3392 3.609853 ACAGTGACAGTGAGCAGAAAAA 58.390 40.909 17.24 0.00 0.00 1.94
3172 3393 3.624861 ACAGTGACAGTGAGCAGAAAAAG 59.375 43.478 17.24 0.00 0.00 2.27
3173 3394 3.624861 CAGTGACAGTGAGCAGAAAAAGT 59.375 43.478 4.08 0.00 0.00 2.66
3174 3395 4.811024 CAGTGACAGTGAGCAGAAAAAGTA 59.189 41.667 4.08 0.00 0.00 2.24
3175 3396 4.811557 AGTGACAGTGAGCAGAAAAAGTAC 59.188 41.667 0.00 0.00 0.00 2.73
3176 3397 4.570772 GTGACAGTGAGCAGAAAAAGTACA 59.429 41.667 0.00 0.00 0.00 2.90
3177 3398 5.064707 GTGACAGTGAGCAGAAAAAGTACAA 59.935 40.000 0.00 0.00 0.00 2.41
3178 3399 5.294306 TGACAGTGAGCAGAAAAAGTACAAG 59.706 40.000 0.00 0.00 0.00 3.16
3179 3400 5.428253 ACAGTGAGCAGAAAAAGTACAAGA 58.572 37.500 0.00 0.00 0.00 3.02
3180 3401 5.525378 ACAGTGAGCAGAAAAAGTACAAGAG 59.475 40.000 0.00 0.00 0.00 2.85
3181 3402 5.525378 CAGTGAGCAGAAAAAGTACAAGAGT 59.475 40.000 0.00 0.00 0.00 3.24
3182 3403 6.037610 CAGTGAGCAGAAAAAGTACAAGAGTT 59.962 38.462 0.00 0.00 0.00 3.01
3183 3404 6.599638 AGTGAGCAGAAAAAGTACAAGAGTTT 59.400 34.615 0.00 0.00 31.63 2.66
3184 3405 7.769044 AGTGAGCAGAAAAAGTACAAGAGTTTA 59.231 33.333 0.00 0.00 30.08 2.01
3185 3406 8.395633 GTGAGCAGAAAAAGTACAAGAGTTTAA 58.604 33.333 0.00 0.00 30.08 1.52
3186 3407 9.120538 TGAGCAGAAAAAGTACAAGAGTTTAAT 57.879 29.630 0.00 0.00 30.08 1.40
3189 3410 9.827411 GCAGAAAAAGTACAAGAGTTTAATAGG 57.173 33.333 0.00 0.00 30.08 2.57
3201 3422 9.774742 CAAGAGTTTAATAGGATTTACAACAGC 57.225 33.333 0.00 0.00 0.00 4.40
3202 3423 9.740710 AAGAGTTTAATAGGATTTACAACAGCT 57.259 29.630 0.00 0.00 0.00 4.24
3203 3424 9.740710 AGAGTTTAATAGGATTTACAACAGCTT 57.259 29.630 0.00 0.00 0.00 3.74
3204 3425 9.989869 GAGTTTAATAGGATTTACAACAGCTTC 57.010 33.333 0.00 0.00 0.00 3.86
3205 3426 9.515226 AGTTTAATAGGATTTACAACAGCTTCA 57.485 29.630 0.00 0.00 0.00 3.02
3211 3432 6.842163 AGGATTTACAACAGCTTCATAAACG 58.158 36.000 0.00 0.00 0.00 3.60
3212 3433 5.511729 GGATTTACAACAGCTTCATAAACGC 59.488 40.000 0.00 0.00 0.00 4.84
3213 3434 2.989422 ACAACAGCTTCATAAACGCC 57.011 45.000 0.00 0.00 0.00 5.68
3214 3435 2.226330 ACAACAGCTTCATAAACGCCA 58.774 42.857 0.00 0.00 0.00 5.69
3215 3436 2.819608 ACAACAGCTTCATAAACGCCAT 59.180 40.909 0.00 0.00 0.00 4.40
3216 3437 3.119849 ACAACAGCTTCATAAACGCCATC 60.120 43.478 0.00 0.00 0.00 3.51
3217 3438 2.991250 ACAGCTTCATAAACGCCATCT 58.009 42.857 0.00 0.00 0.00 2.90
3218 3439 4.137116 ACAGCTTCATAAACGCCATCTA 57.863 40.909 0.00 0.00 0.00 1.98
3219 3440 4.513442 ACAGCTTCATAAACGCCATCTAA 58.487 39.130 0.00 0.00 0.00 2.10
3220 3441 4.941263 ACAGCTTCATAAACGCCATCTAAA 59.059 37.500 0.00 0.00 0.00 1.85
3221 3442 5.065218 ACAGCTTCATAAACGCCATCTAAAG 59.935 40.000 0.00 0.00 0.00 1.85
3222 3443 5.065218 CAGCTTCATAAACGCCATCTAAAGT 59.935 40.000 0.00 0.00 0.00 2.66
3223 3444 5.648092 AGCTTCATAAACGCCATCTAAAGTT 59.352 36.000 0.00 0.00 0.00 2.66
3224 3445 6.151144 AGCTTCATAAACGCCATCTAAAGTTT 59.849 34.615 0.00 0.00 39.68 2.66
3225 3446 6.806739 GCTTCATAAACGCCATCTAAAGTTTT 59.193 34.615 0.00 0.00 37.83 2.43
3226 3447 7.201350 GCTTCATAAACGCCATCTAAAGTTTTG 60.201 37.037 0.00 0.00 37.83 2.44
3227 3448 7.209471 TCATAAACGCCATCTAAAGTTTTGT 57.791 32.000 0.00 0.00 37.83 2.83
3228 3449 8.325421 TCATAAACGCCATCTAAAGTTTTGTA 57.675 30.769 0.00 0.00 37.83 2.41
3229 3450 8.784994 TCATAAACGCCATCTAAAGTTTTGTAA 58.215 29.630 0.00 0.00 37.83 2.41
3230 3451 9.400638 CATAAACGCCATCTAAAGTTTTGTAAA 57.599 29.630 0.00 0.00 37.83 2.01
3231 3452 7.688478 AAACGCCATCTAAAGTTTTGTAAAC 57.312 32.000 0.00 0.00 33.59 2.01
3232 3453 6.628919 ACGCCATCTAAAGTTTTGTAAACT 57.371 33.333 0.00 0.00 0.00 2.66
3233 3454 7.034685 ACGCCATCTAAAGTTTTGTAAACTT 57.965 32.000 10.81 10.81 41.82 2.66
3234 3455 6.915843 ACGCCATCTAAAGTTTTGTAAACTTG 59.084 34.615 15.85 7.03 40.10 3.16
3235 3456 6.915843 CGCCATCTAAAGTTTTGTAAACTTGT 59.084 34.615 15.85 10.01 40.10 3.16
3236 3457 7.434013 CGCCATCTAAAGTTTTGTAAACTTGTT 59.566 33.333 15.85 6.44 40.10 2.83
3237 3458 8.539674 GCCATCTAAAGTTTTGTAAACTTGTTG 58.460 33.333 15.85 11.42 40.10 3.33
3238 3459 9.581099 CCATCTAAAGTTTTGTAAACTTGTTGT 57.419 29.630 15.85 5.58 40.10 3.32
3244 3465 8.920509 AAGTTTTGTAAACTTGTTGTATGGAC 57.079 30.769 14.73 0.00 38.88 4.02
3245 3466 7.190871 AGTTTTGTAAACTTGTTGTATGGACG 58.809 34.615 0.00 0.00 0.00 4.79
3246 3467 6.680874 TTTGTAAACTTGTTGTATGGACGT 57.319 33.333 0.00 0.00 0.00 4.34
3247 3468 5.910637 TGTAAACTTGTTGTATGGACGTC 57.089 39.130 7.13 7.13 0.00 4.34
3248 3469 5.358090 TGTAAACTTGTTGTATGGACGTCA 58.642 37.500 18.91 3.91 0.00 4.35
3249 3470 4.806342 AAACTTGTTGTATGGACGTCAC 57.194 40.909 18.91 7.76 0.00 3.67
3250 3471 2.762745 ACTTGTTGTATGGACGTCACC 58.237 47.619 18.91 1.40 0.00 4.02
3251 3472 2.073816 CTTGTTGTATGGACGTCACCC 58.926 52.381 18.91 0.54 0.00 4.61
3252 3473 1.049402 TGTTGTATGGACGTCACCCA 58.951 50.000 18.91 7.49 38.19 4.51
3253 3474 1.416772 TGTTGTATGGACGTCACCCAA 59.583 47.619 18.91 11.00 37.22 4.12
3254 3475 2.158798 TGTTGTATGGACGTCACCCAAA 60.159 45.455 18.91 3.02 37.22 3.28
3255 3476 3.078837 GTTGTATGGACGTCACCCAAAT 58.921 45.455 18.91 3.42 37.22 2.32
3256 3477 4.255301 GTTGTATGGACGTCACCCAAATA 58.745 43.478 18.91 2.48 37.22 1.40
3257 3478 4.764050 TGTATGGACGTCACCCAAATAT 57.236 40.909 18.91 0.00 37.22 1.28
3258 3479 4.447290 TGTATGGACGTCACCCAAATATG 58.553 43.478 18.91 0.00 37.22 1.78
3259 3480 1.745232 TGGACGTCACCCAAATATGC 58.255 50.000 18.91 0.00 0.00 3.14
3260 3481 1.021968 GGACGTCACCCAAATATGCC 58.978 55.000 18.91 0.00 0.00 4.40
3261 3482 1.680555 GGACGTCACCCAAATATGCCA 60.681 52.381 18.91 0.00 0.00 4.92
3262 3483 2.297701 GACGTCACCCAAATATGCCAT 58.702 47.619 11.55 0.00 0.00 4.40
3263 3484 2.687935 GACGTCACCCAAATATGCCATT 59.312 45.455 11.55 0.00 0.00 3.16
3264 3485 3.096092 ACGTCACCCAAATATGCCATTT 58.904 40.909 0.00 0.00 0.00 2.32
3265 3486 3.513515 ACGTCACCCAAATATGCCATTTT 59.486 39.130 0.00 0.00 0.00 1.82
3266 3487 4.111916 CGTCACCCAAATATGCCATTTTC 58.888 43.478 0.00 0.00 0.00 2.29
3267 3488 4.381398 CGTCACCCAAATATGCCATTTTCA 60.381 41.667 0.00 0.00 0.00 2.69
3268 3489 5.673514 GTCACCCAAATATGCCATTTTCAT 58.326 37.500 0.00 0.00 0.00 2.57
3269 3490 5.754890 GTCACCCAAATATGCCATTTTCATC 59.245 40.000 0.00 0.00 0.00 2.92
3270 3491 5.662208 TCACCCAAATATGCCATTTTCATCT 59.338 36.000 0.00 0.00 0.00 2.90
3271 3492 5.987347 CACCCAAATATGCCATTTTCATCTC 59.013 40.000 0.00 0.00 0.00 2.75
3272 3493 5.901276 ACCCAAATATGCCATTTTCATCTCT 59.099 36.000 0.00 0.00 0.00 3.10
3273 3494 6.183360 ACCCAAATATGCCATTTTCATCTCTG 60.183 38.462 0.00 0.00 0.00 3.35
3274 3495 6.183360 CCCAAATATGCCATTTTCATCTCTGT 60.183 38.462 0.00 0.00 0.00 3.41
3275 3496 7.270047 CCAAATATGCCATTTTCATCTCTGTT 58.730 34.615 0.00 0.00 0.00 3.16
3276 3497 8.415553 CCAAATATGCCATTTTCATCTCTGTTA 58.584 33.333 0.00 0.00 0.00 2.41
3277 3498 9.806203 CAAATATGCCATTTTCATCTCTGTTAA 57.194 29.630 0.00 0.00 0.00 2.01
3278 3499 9.807649 AAATATGCCATTTTCATCTCTGTTAAC 57.192 29.630 0.00 0.00 0.00 2.01
3279 3500 5.643379 TGCCATTTTCATCTCTGTTAACC 57.357 39.130 2.48 0.00 0.00 2.85
3280 3501 4.462483 TGCCATTTTCATCTCTGTTAACCC 59.538 41.667 2.48 0.00 0.00 4.11
3281 3502 4.142160 GCCATTTTCATCTCTGTTAACCCC 60.142 45.833 2.48 0.00 0.00 4.95
3282 3503 5.016173 CCATTTTCATCTCTGTTAACCCCA 58.984 41.667 2.48 0.00 0.00 4.96
3283 3504 5.126061 CCATTTTCATCTCTGTTAACCCCAG 59.874 44.000 2.48 0.00 0.00 4.45
3284 3505 5.576563 TTTTCATCTCTGTTAACCCCAGA 57.423 39.130 2.48 2.12 37.40 3.86
3285 3506 5.576563 TTTCATCTCTGTTAACCCCAGAA 57.423 39.130 2.48 0.00 38.42 3.02
3286 3507 4.553330 TCATCTCTGTTAACCCCAGAAC 57.447 45.455 2.48 0.00 38.42 3.01
3287 3508 3.263425 TCATCTCTGTTAACCCCAGAACC 59.737 47.826 2.48 0.00 38.42 3.62
3288 3509 2.986050 TCTCTGTTAACCCCAGAACCT 58.014 47.619 2.48 0.00 38.42 3.50
3289 3510 2.904434 TCTCTGTTAACCCCAGAACCTC 59.096 50.000 2.48 0.00 38.42 3.85
3290 3511 2.637872 CTCTGTTAACCCCAGAACCTCA 59.362 50.000 2.48 0.00 38.42 3.86
3291 3512 2.370849 TCTGTTAACCCCAGAACCTCAC 59.629 50.000 2.48 0.00 36.07 3.51
3292 3513 2.105821 CTGTTAACCCCAGAACCTCACA 59.894 50.000 2.48 0.00 31.38 3.58
3293 3514 2.510382 TGTTAACCCCAGAACCTCACAA 59.490 45.455 2.48 0.00 0.00 3.33
3294 3515 2.882761 GTTAACCCCAGAACCTCACAAC 59.117 50.000 0.00 0.00 0.00 3.32
3295 3516 0.923358 AACCCCAGAACCTCACAACA 59.077 50.000 0.00 0.00 0.00 3.33
3296 3517 1.149101 ACCCCAGAACCTCACAACAT 58.851 50.000 0.00 0.00 0.00 2.71
3297 3518 1.499007 ACCCCAGAACCTCACAACATT 59.501 47.619 0.00 0.00 0.00 2.71
3298 3519 2.091333 ACCCCAGAACCTCACAACATTT 60.091 45.455 0.00 0.00 0.00 2.32
3299 3520 2.965147 CCCCAGAACCTCACAACATTTT 59.035 45.455 0.00 0.00 0.00 1.82
3300 3521 3.005791 CCCCAGAACCTCACAACATTTTC 59.994 47.826 0.00 0.00 0.00 2.29
3301 3522 3.636300 CCCAGAACCTCACAACATTTTCA 59.364 43.478 0.00 0.00 0.00 2.69
3302 3523 4.281688 CCCAGAACCTCACAACATTTTCAT 59.718 41.667 0.00 0.00 0.00 2.57
3303 3524 5.464168 CCAGAACCTCACAACATTTTCATC 58.536 41.667 0.00 0.00 0.00 2.92
3304 3525 5.464168 CAGAACCTCACAACATTTTCATCC 58.536 41.667 0.00 0.00 0.00 3.51
3305 3526 4.216257 AGAACCTCACAACATTTTCATCCG 59.784 41.667 0.00 0.00 0.00 4.18
3306 3527 3.486383 ACCTCACAACATTTTCATCCGT 58.514 40.909 0.00 0.00 0.00 4.69
3307 3528 3.253188 ACCTCACAACATTTTCATCCGTG 59.747 43.478 0.00 0.00 0.00 4.94
3308 3529 3.253188 CCTCACAACATTTTCATCCGTGT 59.747 43.478 0.00 0.00 0.00 4.49
3309 3530 4.261572 CCTCACAACATTTTCATCCGTGTT 60.262 41.667 0.00 0.00 35.34 3.32
3310 3531 5.049060 CCTCACAACATTTTCATCCGTGTTA 60.049 40.000 0.00 0.00 33.79 2.41
3311 3532 6.378710 TCACAACATTTTCATCCGTGTTAA 57.621 33.333 0.00 0.00 33.79 2.01
3312 3533 6.796426 TCACAACATTTTCATCCGTGTTAAA 58.204 32.000 0.00 0.00 33.79 1.52
3313 3534 6.693545 TCACAACATTTTCATCCGTGTTAAAC 59.306 34.615 0.00 0.00 33.79 2.01
3314 3535 5.980715 ACAACATTTTCATCCGTGTTAAACC 59.019 36.000 0.00 0.00 33.79 3.27
3315 3536 5.128992 ACATTTTCATCCGTGTTAAACCC 57.871 39.130 0.00 0.00 0.00 4.11
3316 3537 4.585162 ACATTTTCATCCGTGTTAAACCCA 59.415 37.500 0.00 0.00 0.00 4.51
3317 3538 5.245075 ACATTTTCATCCGTGTTAAACCCAT 59.755 36.000 0.00 0.00 0.00 4.00
3318 3539 5.379732 TTTTCATCCGTGTTAAACCCATC 57.620 39.130 0.00 0.00 0.00 3.51
3319 3540 3.992943 TCATCCGTGTTAAACCCATCT 57.007 42.857 0.00 0.00 0.00 2.90
3320 3541 5.423704 TTCATCCGTGTTAAACCCATCTA 57.576 39.130 0.00 0.00 0.00 1.98
3321 3542 5.423704 TCATCCGTGTTAAACCCATCTAA 57.576 39.130 0.00 0.00 0.00 2.10
3322 3543 5.424757 TCATCCGTGTTAAACCCATCTAAG 58.575 41.667 0.00 0.00 0.00 2.18
3323 3544 4.895668 TCCGTGTTAAACCCATCTAAGT 57.104 40.909 0.00 0.00 0.00 2.24
3324 3545 5.231702 TCCGTGTTAAACCCATCTAAGTT 57.768 39.130 0.00 0.00 0.00 2.66
3325 3546 5.623169 TCCGTGTTAAACCCATCTAAGTTT 58.377 37.500 0.00 0.00 39.44 2.66
3326 3547 6.063404 TCCGTGTTAAACCCATCTAAGTTTT 58.937 36.000 0.00 0.00 37.39 2.43
3327 3548 6.016943 TCCGTGTTAAACCCATCTAAGTTTTG 60.017 38.462 0.00 0.00 37.39 2.44
3328 3549 6.238814 CCGTGTTAAACCCATCTAAGTTTTGT 60.239 38.462 0.00 0.00 37.39 2.83
3329 3550 7.041235 CCGTGTTAAACCCATCTAAGTTTTGTA 60.041 37.037 0.00 0.00 37.39 2.41
3330 3551 8.508875 CGTGTTAAACCCATCTAAGTTTTGTAT 58.491 33.333 0.00 0.00 37.39 2.29
3337 3558 9.582648 AACCCATCTAAGTTTTGTATAACTTGT 57.417 29.630 10.98 0.00 45.36 3.16
3338 3559 9.582648 ACCCATCTAAGTTTTGTATAACTTGTT 57.417 29.630 10.98 0.00 45.36 2.83
3339 3560 9.840427 CCCATCTAAGTTTTGTATAACTTGTTG 57.160 33.333 10.98 6.51 45.36 3.33
3340 3561 9.341899 CCATCTAAGTTTTGTATAACTTGTTGC 57.658 33.333 10.98 0.00 45.36 4.17
3341 3562 9.891828 CATCTAAGTTTTGTATAACTTGTTGCA 57.108 29.630 10.98 0.00 45.36 4.08
3343 3564 9.891828 TCTAAGTTTTGTATAACTTGTTGCATG 57.108 29.630 10.98 0.00 45.36 4.06
3344 3565 7.945033 AAGTTTTGTATAACTTGTTGCATGG 57.055 32.000 0.00 0.00 44.42 3.66
3345 3566 6.454795 AGTTTTGTATAACTTGTTGCATGGG 58.545 36.000 0.00 0.00 34.81 4.00
3346 3567 6.266558 AGTTTTGTATAACTTGTTGCATGGGA 59.733 34.615 0.00 0.00 34.81 4.37
3347 3568 6.849085 TTTGTATAACTTGTTGCATGGGAT 57.151 33.333 0.00 0.00 0.00 3.85
3348 3569 5.833406 TGTATAACTTGTTGCATGGGATG 57.167 39.130 0.00 0.00 0.00 3.51
3362 3583 5.434352 CATGGGATGCAATGAACTAAGAG 57.566 43.478 0.00 0.00 0.00 2.85
3363 3584 3.282021 TGGGATGCAATGAACTAAGAGC 58.718 45.455 0.00 0.00 0.00 4.09
3364 3585 3.282021 GGGATGCAATGAACTAAGAGCA 58.718 45.455 0.00 0.00 36.34 4.26
3365 3586 3.887716 GGGATGCAATGAACTAAGAGCAT 59.112 43.478 0.00 0.00 44.50 3.79
3737 3958 3.089784 CGAAAATCGGCCCAGTCG 58.910 61.111 0.00 0.00 36.00 4.18
3738 3959 2.791927 GAAAATCGGCCCAGTCGC 59.208 61.111 0.00 0.00 0.00 5.19
3739 3960 3.095898 GAAAATCGGCCCAGTCGCG 62.096 63.158 0.00 0.00 0.00 5.87
3749 3970 4.717629 CAGTCGCGCCTCCACGAA 62.718 66.667 0.00 0.00 40.47 3.85
3750 3971 4.719369 AGTCGCGCCTCCACGAAC 62.719 66.667 0.00 0.00 40.47 3.95
3751 3972 4.719369 GTCGCGCCTCCACGAACT 62.719 66.667 0.00 0.00 40.47 3.01
3752 3973 4.415332 TCGCGCCTCCACGAACTC 62.415 66.667 0.00 0.00 34.93 3.01
3763 3984 2.687436 CGAACTCGTTTAGCGCCG 59.313 61.111 2.29 0.00 41.07 6.46
3764 3985 2.785105 CGAACTCGTTTAGCGCCGG 61.785 63.158 2.29 0.00 41.07 6.13
3765 3986 1.735559 GAACTCGTTTAGCGCCGGT 60.736 57.895 2.29 0.00 41.07 5.28
3766 3987 1.287041 GAACTCGTTTAGCGCCGGTT 61.287 55.000 2.29 7.04 41.07 4.44
3767 3988 0.881600 AACTCGTTTAGCGCCGGTTT 60.882 50.000 2.29 0.00 41.07 3.27
3768 3989 1.131826 CTCGTTTAGCGCCGGTTTG 59.868 57.895 2.29 0.00 41.07 2.93
3769 3990 2.174835 CGTTTAGCGCCGGTTTGG 59.825 61.111 2.29 0.00 42.50 3.28
3770 3991 2.564458 GTTTAGCGCCGGTTTGGG 59.436 61.111 2.29 0.00 38.63 4.12
3777 3998 3.593318 GCCGGTTTGGGCGAAATA 58.407 55.556 1.90 0.00 44.40 1.40
3778 3999 2.112029 GCCGGTTTGGGCGAAATAT 58.888 52.632 1.90 0.00 44.40 1.28
3779 4000 1.310904 GCCGGTTTGGGCGAAATATA 58.689 50.000 1.90 0.00 44.40 0.86
3780 4001 1.265905 GCCGGTTTGGGCGAAATATAG 59.734 52.381 1.90 0.00 44.40 1.31
3781 4002 2.841215 CCGGTTTGGGCGAAATATAGA 58.159 47.619 0.00 0.00 0.00 1.98
3782 4003 3.207778 CCGGTTTGGGCGAAATATAGAA 58.792 45.455 0.00 0.00 0.00 2.10
3783 4004 3.002965 CCGGTTTGGGCGAAATATAGAAC 59.997 47.826 0.00 0.00 0.00 3.01
3784 4005 3.002965 CGGTTTGGGCGAAATATAGAACC 59.997 47.826 0.00 0.00 33.67 3.62
3785 4006 3.002965 GGTTTGGGCGAAATATAGAACCG 59.997 47.826 0.00 0.00 0.00 4.44
3786 4007 2.536761 TGGGCGAAATATAGAACCGG 57.463 50.000 0.00 0.00 0.00 5.28
3787 4008 1.154197 GGGCGAAATATAGAACCGGC 58.846 55.000 0.00 0.00 43.57 6.13
3788 4009 0.788391 GGCGAAATATAGAACCGGCG 59.212 55.000 0.00 0.00 36.19 6.46
3789 4010 1.603678 GGCGAAATATAGAACCGGCGA 60.604 52.381 9.30 0.00 36.19 5.54
3790 4011 2.334838 GCGAAATATAGAACCGGCGAT 58.665 47.619 9.30 0.00 0.00 4.58
3791 4012 2.344741 GCGAAATATAGAACCGGCGATC 59.655 50.000 9.30 6.50 0.00 3.69
3792 4013 2.921754 CGAAATATAGAACCGGCGATCC 59.078 50.000 9.30 0.00 0.00 3.36
3793 4014 3.259902 GAAATATAGAACCGGCGATCCC 58.740 50.000 9.30 0.00 0.00 3.85
3847 4068 2.429069 GCCGGCACAAGCGAAAAG 60.429 61.111 24.80 0.00 43.41 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 0.617935 TCGGGCAAGATGAACATGGA 59.382 50.000 0.00 0.00 0.00 3.41
62 63 0.734889 GTCGGGCAAGATGAACATGG 59.265 55.000 0.00 0.00 0.00 3.66
67 68 0.389817 CACGAGTCGGGCAAGATGAA 60.390 55.000 18.30 0.00 0.00 2.57
85 86 1.083489 GCGTCCATCGGAAAATGACA 58.917 50.000 0.00 0.00 40.26 3.58
89 90 0.322098 TGTGGCGTCCATCGGAAAAT 60.322 50.000 1.90 0.00 40.26 1.82
132 133 8.375608 TCTCGTTGGAACTAGATAGTACATAC 57.624 38.462 0.00 0.00 34.99 2.39
133 134 8.969260 TTCTCGTTGGAACTAGATAGTACATA 57.031 34.615 0.00 0.00 34.99 2.29
134 135 7.876936 TTCTCGTTGGAACTAGATAGTACAT 57.123 36.000 0.00 0.00 34.99 2.29
135 136 7.013083 GGATTCTCGTTGGAACTAGATAGTACA 59.987 40.741 0.00 0.00 34.99 2.90
136 137 7.361894 GGATTCTCGTTGGAACTAGATAGTAC 58.638 42.308 0.00 0.00 34.99 2.73
137 138 6.489361 GGGATTCTCGTTGGAACTAGATAGTA 59.511 42.308 0.00 0.00 34.99 1.82
138 139 5.302313 GGGATTCTCGTTGGAACTAGATAGT 59.698 44.000 0.00 0.00 38.39 2.12
139 140 5.536916 AGGGATTCTCGTTGGAACTAGATAG 59.463 44.000 0.00 0.00 31.82 2.08
140 141 5.455872 AGGGATTCTCGTTGGAACTAGATA 58.544 41.667 0.00 0.00 31.82 1.98
141 142 4.290942 AGGGATTCTCGTTGGAACTAGAT 58.709 43.478 0.00 0.00 31.82 1.98
142 143 3.700038 GAGGGATTCTCGTTGGAACTAGA 59.300 47.826 0.00 0.00 32.18 2.43
143 144 3.181474 GGAGGGATTCTCGTTGGAACTAG 60.181 52.174 0.00 0.00 43.34 2.57
167 168 2.000447 GATTCACGGACGGAAGAAAGG 59.000 52.381 0.00 0.00 0.00 3.11
181 202 5.449177 GGAAGAATCAAATCACGGGATTCAC 60.449 44.000 14.46 4.02 45.82 3.18
206 232 2.045926 ACCGCAGATTGAGGGCAC 60.046 61.111 3.93 0.00 41.96 5.01
213 239 1.399440 CACCAGATTCACCGCAGATTG 59.601 52.381 0.00 0.00 0.00 2.67
214 240 1.278985 TCACCAGATTCACCGCAGATT 59.721 47.619 0.00 0.00 0.00 2.40
217 243 0.036952 AGTCACCAGATTCACCGCAG 60.037 55.000 0.00 0.00 0.00 5.18
218 244 0.320683 CAGTCACCAGATTCACCGCA 60.321 55.000 0.00 0.00 0.00 5.69
220 246 1.021390 GGCAGTCACCAGATTCACCG 61.021 60.000 0.00 0.00 0.00 4.94
221 247 0.326264 AGGCAGTCACCAGATTCACC 59.674 55.000 0.00 0.00 0.00 4.02
234 277 1.141657 TCTCAAAGTGAAGCAGGCAGT 59.858 47.619 0.00 0.00 0.00 4.40
249 292 1.152030 AGGTGGTCAGGCCTCTCAA 60.152 57.895 0.00 0.00 38.35 3.02
258 301 1.945394 GCAATATGCTCAGGTGGTCAG 59.055 52.381 0.00 0.00 40.96 3.51
259 302 2.042686 GCAATATGCTCAGGTGGTCA 57.957 50.000 0.00 0.00 40.96 4.02
270 313 4.732938 GCCTCTCAAACTGAAGCAATATGC 60.733 45.833 0.00 0.00 45.46 3.14
271 314 4.639310 AGCCTCTCAAACTGAAGCAATATG 59.361 41.667 0.00 0.00 0.00 1.78
272 315 4.853007 AGCCTCTCAAACTGAAGCAATAT 58.147 39.130 0.00 0.00 0.00 1.28
273 316 4.019860 AGAGCCTCTCAAACTGAAGCAATA 60.020 41.667 0.00 0.00 32.06 1.90
274 317 3.080319 GAGCCTCTCAAACTGAAGCAAT 58.920 45.455 0.00 0.00 0.00 3.56
275 318 2.105477 AGAGCCTCTCAAACTGAAGCAA 59.895 45.455 0.00 0.00 32.06 3.91
276 319 1.696336 AGAGCCTCTCAAACTGAAGCA 59.304 47.619 0.00 0.00 32.06 3.91
277 320 2.345876 GAGAGCCTCTCAAACTGAAGC 58.654 52.381 16.86 0.00 42.90 3.86
287 330 1.481772 ACTGCAGATTGAGAGCCTCTC 59.518 52.381 23.35 14.98 43.65 3.20
288 331 1.207570 CACTGCAGATTGAGAGCCTCT 59.792 52.381 23.35 0.00 0.00 3.69
289 332 1.654317 CACTGCAGATTGAGAGCCTC 58.346 55.000 23.35 0.00 0.00 4.70
290 333 0.392729 GCACTGCAGATTGAGAGCCT 60.393 55.000 23.35 0.00 0.00 4.58
291 334 0.392729 AGCACTGCAGATTGAGAGCC 60.393 55.000 23.35 0.00 0.00 4.70
292 335 1.008329 GAGCACTGCAGATTGAGAGC 58.992 55.000 23.35 11.72 0.00 4.09
293 336 2.166870 AGAGAGCACTGCAGATTGAGAG 59.833 50.000 23.35 2.01 0.00 3.20
294 337 2.166050 GAGAGAGCACTGCAGATTGAGA 59.834 50.000 23.35 0.00 0.00 3.27
295 338 2.166870 AGAGAGAGCACTGCAGATTGAG 59.833 50.000 23.35 5.65 0.00 3.02
296 339 2.177734 AGAGAGAGCACTGCAGATTGA 58.822 47.619 23.35 0.00 0.00 2.57
297 340 2.676632 AGAGAGAGCACTGCAGATTG 57.323 50.000 23.35 10.64 0.00 2.67
298 341 3.364549 ACTAGAGAGAGCACTGCAGATT 58.635 45.455 23.35 4.76 0.00 2.40
299 342 3.017048 ACTAGAGAGAGCACTGCAGAT 57.983 47.619 23.35 5.54 0.00 2.90
300 343 2.505650 ACTAGAGAGAGCACTGCAGA 57.494 50.000 23.35 0.00 0.00 4.26
301 344 2.754552 AGAACTAGAGAGAGCACTGCAG 59.245 50.000 13.48 13.48 0.00 4.41
302 345 2.491298 CAGAACTAGAGAGAGCACTGCA 59.509 50.000 3.30 0.00 0.00 4.41
303 346 2.735126 GCAGAACTAGAGAGAGCACTGC 60.735 54.545 0.00 0.00 39.70 4.40
304 347 2.491298 TGCAGAACTAGAGAGAGCACTG 59.509 50.000 0.00 0.00 0.00 3.66
305 348 2.801483 TGCAGAACTAGAGAGAGCACT 58.199 47.619 0.00 0.00 0.00 4.40
306 349 3.584406 TTGCAGAACTAGAGAGAGCAC 57.416 47.619 0.00 0.00 0.00 4.40
307 350 4.382470 GGATTTGCAGAACTAGAGAGAGCA 60.382 45.833 0.00 0.00 0.00 4.26
308 351 4.119136 GGATTTGCAGAACTAGAGAGAGC 58.881 47.826 0.00 0.00 0.00 4.09
309 352 4.442753 GGGGATTTGCAGAACTAGAGAGAG 60.443 50.000 0.00 0.00 0.00 3.20
310 353 3.452627 GGGGATTTGCAGAACTAGAGAGA 59.547 47.826 0.00 0.00 0.00 3.10
311 354 3.432890 GGGGGATTTGCAGAACTAGAGAG 60.433 52.174 0.00 0.00 0.00 3.20
319 362 0.897863 CCAACGGGGGATTTGCAGAA 60.898 55.000 0.00 0.00 0.00 3.02
337 380 1.151668 CGATGCTGATTCGGGATTCC 58.848 55.000 0.65 0.00 33.05 3.01
344 387 1.212616 GGAGAACCGATGCTGATTCG 58.787 55.000 0.00 0.00 36.38 3.34
345 388 1.936547 GTGGAGAACCGATGCTGATTC 59.063 52.381 0.00 0.00 39.42 2.52
348 391 0.247460 CAGTGGAGAACCGATGCTGA 59.753 55.000 0.00 0.00 39.42 4.26
349 392 0.742281 CCAGTGGAGAACCGATGCTG 60.742 60.000 1.68 0.00 39.42 4.41
350 393 1.599047 CCAGTGGAGAACCGATGCT 59.401 57.895 1.68 0.00 39.42 3.79
351 394 2.109126 GCCAGTGGAGAACCGATGC 61.109 63.158 15.20 0.00 39.42 3.91
352 395 0.742281 CAGCCAGTGGAGAACCGATG 60.742 60.000 15.20 0.00 39.42 3.84
370 416 4.575885 CTTTAGACCCAAATCGAGTTCCA 58.424 43.478 0.00 0.00 0.00 3.53
372 418 4.093556 CAGCTTTAGACCCAAATCGAGTTC 59.906 45.833 0.00 0.00 0.00 3.01
374 420 3.260884 TCAGCTTTAGACCCAAATCGAGT 59.739 43.478 0.00 0.00 0.00 4.18
376 422 3.369471 CCTCAGCTTTAGACCCAAATCGA 60.369 47.826 0.00 0.00 0.00 3.59
394 440 3.356639 CTAAGACGCGGCAGCCTCA 62.357 63.158 17.71 0.00 41.18 3.86
402 448 1.918609 GCAGAAACTACTAAGACGCGG 59.081 52.381 12.47 0.00 0.00 6.46
407 453 6.004574 TCAGACAGAGCAGAAACTACTAAGA 58.995 40.000 0.00 0.00 0.00 2.10
412 458 5.233988 ACAATCAGACAGAGCAGAAACTAC 58.766 41.667 0.00 0.00 0.00 2.73
421 467 3.406764 ACCAAGAACAATCAGACAGAGC 58.593 45.455 0.00 0.00 0.00 4.09
422 468 5.755813 CAAACCAAGAACAATCAGACAGAG 58.244 41.667 0.00 0.00 0.00 3.35
431 492 5.050431 GCGTTAATTGCAAACCAAGAACAAT 60.050 36.000 1.71 0.00 36.76 2.71
432 493 4.268884 GCGTTAATTGCAAACCAAGAACAA 59.731 37.500 1.71 0.00 36.76 2.83
441 502 3.427193 ACGAAATGGCGTTAATTGCAAAC 59.573 39.130 1.71 0.00 42.71 2.93
460 521 8.972458 TGGATTGGATAATAAAATCTCAACGA 57.028 30.769 0.00 0.00 32.15 3.85
470 531 7.986320 CCACATGCTTTTGGATTGGATAATAAA 59.014 33.333 0.00 0.00 34.46 1.40
471 532 7.499292 CCACATGCTTTTGGATTGGATAATAA 58.501 34.615 0.00 0.00 34.46 1.40
472 533 6.462768 GCCACATGCTTTTGGATTGGATAATA 60.463 38.462 8.88 0.00 34.46 0.98
473 534 5.685599 GCCACATGCTTTTGGATTGGATAAT 60.686 40.000 8.88 0.00 34.46 1.28
474 535 4.382901 GCCACATGCTTTTGGATTGGATAA 60.383 41.667 8.88 0.00 34.46 1.75
475 536 3.132646 GCCACATGCTTTTGGATTGGATA 59.867 43.478 8.88 0.00 34.46 2.59
476 537 2.093341 GCCACATGCTTTTGGATTGGAT 60.093 45.455 8.88 0.00 34.46 3.41
477 538 1.275856 GCCACATGCTTTTGGATTGGA 59.724 47.619 8.88 0.00 34.46 3.53
478 539 1.729284 GCCACATGCTTTTGGATTGG 58.271 50.000 8.88 0.00 34.46 3.16
485 546 8.819303 TCTTAACAAGAAGAGCCACATGCTTTT 61.819 37.037 0.00 0.00 46.30 2.27
486 547 7.415025 TCTTAACAAGAAGAGCCACATGCTTT 61.415 38.462 0.00 0.00 42.36 3.51
487 548 5.978457 TCTTAACAAGAAGAGCCACATGCTT 60.978 40.000 0.00 0.00 42.36 3.91
488 549 4.505566 TCTTAACAAGAAGAGCCACATGCT 60.506 41.667 0.00 0.00 44.07 3.79
489 550 3.753272 TCTTAACAAGAAGAGCCACATGC 59.247 43.478 0.00 0.00 35.66 4.06
490 551 6.149973 TGAATCTTAACAAGAAGAGCCACATG 59.850 38.462 0.00 0.00 41.63 3.21
491 552 6.240894 TGAATCTTAACAAGAAGAGCCACAT 58.759 36.000 0.00 0.00 41.63 3.21
492 553 5.620206 TGAATCTTAACAAGAAGAGCCACA 58.380 37.500 0.00 0.00 41.63 4.17
493 554 6.749923 ATGAATCTTAACAAGAAGAGCCAC 57.250 37.500 0.00 0.00 41.63 5.01
494 555 7.882791 TGTAATGAATCTTAACAAGAAGAGCCA 59.117 33.333 0.00 0.00 41.63 4.75
495 556 8.268850 TGTAATGAATCTTAACAAGAAGAGCC 57.731 34.615 0.00 0.00 41.63 4.70
496 557 9.766277 CTTGTAATGAATCTTAACAAGAAGAGC 57.234 33.333 13.15 0.00 41.63 4.09
497 558 9.766277 GCTTGTAATGAATCTTAACAAGAAGAG 57.234 33.333 18.92 2.17 41.63 2.85
498 559 9.507329 AGCTTGTAATGAATCTTAACAAGAAGA 57.493 29.630 18.92 0.00 41.63 2.87
499 560 9.766277 GAGCTTGTAATGAATCTTAACAAGAAG 57.234 33.333 18.92 0.00 41.63 2.85
500 561 8.730680 GGAGCTTGTAATGAATCTTAACAAGAA 58.269 33.333 18.92 0.00 41.63 2.52
501 562 7.882791 TGGAGCTTGTAATGAATCTTAACAAGA 59.117 33.333 18.92 0.00 42.69 3.02
502 563 7.965107 GTGGAGCTTGTAATGAATCTTAACAAG 59.035 37.037 13.74 13.74 36.96 3.16
503 564 7.360861 CGTGGAGCTTGTAATGAATCTTAACAA 60.361 37.037 0.00 0.00 0.00 2.83
504 565 6.092122 CGTGGAGCTTGTAATGAATCTTAACA 59.908 38.462 0.00 0.00 0.00 2.41
505 566 6.092259 ACGTGGAGCTTGTAATGAATCTTAAC 59.908 38.462 0.00 0.00 0.00 2.01
506 567 6.170506 ACGTGGAGCTTGTAATGAATCTTAA 58.829 36.000 0.00 0.00 0.00 1.85
507 568 5.730550 ACGTGGAGCTTGTAATGAATCTTA 58.269 37.500 0.00 0.00 0.00 2.10
508 569 4.579869 ACGTGGAGCTTGTAATGAATCTT 58.420 39.130 0.00 0.00 0.00 2.40
509 570 4.207891 ACGTGGAGCTTGTAATGAATCT 57.792 40.909 0.00 0.00 0.00 2.40
511 572 6.597672 TGATTAACGTGGAGCTTGTAATGAAT 59.402 34.615 0.00 0.00 0.00 2.57
514 575 5.794687 TGATTAACGTGGAGCTTGTAATG 57.205 39.130 0.00 0.00 0.00 1.90
522 583 2.627945 TGTGGATGATTAACGTGGAGC 58.372 47.619 0.00 0.00 0.00 4.70
525 586 4.023622 TGTTGTTGTGGATGATTAACGTGG 60.024 41.667 0.00 0.00 0.00 4.94
529 590 7.370383 ACAGATTGTTGTTGTGGATGATTAAC 58.630 34.615 0.00 0.00 0.00 2.01
530 591 7.309133 GGACAGATTGTTGTTGTGGATGATTAA 60.309 37.037 0.00 0.00 0.00 1.40
533 594 4.460382 GGACAGATTGTTGTTGTGGATGAT 59.540 41.667 0.00 0.00 0.00 2.45
538 599 1.613437 GGGGACAGATTGTTGTTGTGG 59.387 52.381 0.00 0.00 0.00 4.17
539 600 1.613437 GGGGGACAGATTGTTGTTGTG 59.387 52.381 0.00 0.00 0.00 3.33
540 601 1.216678 TGGGGGACAGATTGTTGTTGT 59.783 47.619 0.00 0.00 0.00 3.32
557 618 1.203052 GTGTGGTGAAGATGCAATGGG 59.797 52.381 0.00 0.00 0.00 4.00
559 620 5.571784 AATAGTGTGGTGAAGATGCAATG 57.428 39.130 0.00 0.00 0.00 2.82
957 1018 3.112075 GACTACGCGCTGCAGCAA 61.112 61.111 36.03 18.03 42.21 3.91
958 1019 4.056125 AGACTACGCGCTGCAGCA 62.056 61.111 36.03 17.45 42.21 4.41
973 1034 3.305676 GCTGTACTTGCTTGTCTCTCAGA 60.306 47.826 0.00 0.00 0.00 3.27
980 1055 0.519077 GGCTGCTGTACTTGCTTGTC 59.481 55.000 0.00 4.32 0.00 3.18
982 1057 1.135489 CATGGCTGCTGTACTTGCTTG 60.135 52.381 0.00 6.75 0.00 4.01
990 1065 2.286045 TCCCCCATGGCTGCTGTA 60.286 61.111 6.09 0.00 0.00 2.74
991 1066 3.736224 CTCCCCCATGGCTGCTGT 61.736 66.667 6.09 0.00 0.00 4.40
1092 1173 4.426521 AGGATGTAGGGGCATGCT 57.573 55.556 18.92 0.00 41.63 3.79
1205 1310 2.736236 AGCACTCGTTCGCTGCAG 60.736 61.111 10.11 10.11 37.02 4.41
1302 1416 4.322385 GTGACGTTGTTGGCGGCC 62.322 66.667 13.32 13.32 36.36 6.13
1967 2165 0.670854 GTCGAGGAACCTGAACTGCC 60.671 60.000 0.00 0.00 0.00 4.85
2193 2391 1.916181 GAGGGGATCTTGAACTTGGGA 59.084 52.381 0.00 0.00 0.00 4.37
2355 2553 4.963878 ATGGCGAACATGGAGACC 57.036 55.556 0.00 0.00 38.70 3.85
2811 3015 1.866853 CTCCTTTGGCTTTGGCGTCC 61.867 60.000 0.00 0.00 39.81 4.79
2861 3080 0.882042 ACGAACTGTTGCAGCCAGAG 60.882 55.000 18.98 12.68 34.37 3.35
2863 3082 1.280746 CACGAACTGTTGCAGCCAG 59.719 57.895 12.46 12.46 34.37 4.85
2864 3083 1.436195 GACACGAACTGTTGCAGCCA 61.436 55.000 0.00 0.00 34.37 4.75
2865 3084 1.160329 AGACACGAACTGTTGCAGCC 61.160 55.000 0.00 0.00 34.37 4.85
2866 3085 0.041839 CAGACACGAACTGTTGCAGC 60.042 55.000 0.00 0.00 34.37 5.25
2871 3090 1.526887 CGCATTCAGACACGAACTGTT 59.473 47.619 0.00 0.00 36.81 3.16
2872 3091 1.139989 CGCATTCAGACACGAACTGT 58.860 50.000 0.00 0.00 36.81 3.55
2873 3092 1.136529 CACGCATTCAGACACGAACTG 60.137 52.381 0.00 0.00 36.80 3.16
2874 3093 1.139989 CACGCATTCAGACACGAACT 58.860 50.000 0.00 0.00 0.00 3.01
2878 3098 2.094539 CGCACGCATTCAGACACG 59.905 61.111 0.00 0.00 0.00 4.49
2883 3103 1.044725 GAAAACACGCACGCATTCAG 58.955 50.000 0.00 0.00 0.00 3.02
2890 3110 3.849145 TCTTGAAAAAGAAAACACGCACG 59.151 39.130 0.00 0.00 0.00 5.34
2891 3111 5.003496 GTCTCTTGAAAAAGAAAACACGCAC 59.997 40.000 0.00 0.00 0.00 5.34
2892 3112 5.092781 GTCTCTTGAAAAAGAAAACACGCA 58.907 37.500 0.00 0.00 0.00 5.24
2893 3113 5.092781 TGTCTCTTGAAAAAGAAAACACGC 58.907 37.500 0.00 0.00 0.00 5.34
2894 3114 6.966632 TCATGTCTCTTGAAAAAGAAAACACG 59.033 34.615 0.00 0.00 0.00 4.49
2895 3115 7.754924 TGTCATGTCTCTTGAAAAAGAAAACAC 59.245 33.333 0.00 0.00 0.00 3.32
2896 3116 7.825681 TGTCATGTCTCTTGAAAAAGAAAACA 58.174 30.769 0.00 6.06 0.00 2.83
2897 3117 8.184192 TCTGTCATGTCTCTTGAAAAAGAAAAC 58.816 33.333 0.00 0.00 0.00 2.43
2898 3118 8.279970 TCTGTCATGTCTCTTGAAAAAGAAAA 57.720 30.769 0.00 0.00 0.00 2.29
2899 3119 7.864108 TCTGTCATGTCTCTTGAAAAAGAAA 57.136 32.000 0.00 0.00 0.00 2.52
2900 3120 7.864108 TTCTGTCATGTCTCTTGAAAAAGAA 57.136 32.000 0.00 0.00 0.00 2.52
2901 3121 9.212641 CTATTCTGTCATGTCTCTTGAAAAAGA 57.787 33.333 0.00 0.00 0.00 2.52
2902 3122 9.212641 TCTATTCTGTCATGTCTCTTGAAAAAG 57.787 33.333 0.00 0.00 0.00 2.27
2903 3123 9.730705 ATCTATTCTGTCATGTCTCTTGAAAAA 57.269 29.630 0.00 0.00 0.00 1.94
2904 3124 9.730705 AATCTATTCTGTCATGTCTCTTGAAAA 57.269 29.630 0.00 0.00 0.00 2.29
2905 3125 9.159364 CAATCTATTCTGTCATGTCTCTTGAAA 57.841 33.333 0.00 0.00 0.00 2.69
2906 3126 8.316946 ACAATCTATTCTGTCATGTCTCTTGAA 58.683 33.333 0.00 0.00 0.00 2.69
2907 3127 7.845037 ACAATCTATTCTGTCATGTCTCTTGA 58.155 34.615 0.00 0.00 0.00 3.02
2908 3128 8.388853 CAACAATCTATTCTGTCATGTCTCTTG 58.611 37.037 0.00 0.00 0.00 3.02
2909 3129 8.316946 TCAACAATCTATTCTGTCATGTCTCTT 58.683 33.333 0.00 0.00 0.00 2.85
2910 3130 7.845037 TCAACAATCTATTCTGTCATGTCTCT 58.155 34.615 0.00 0.00 0.00 3.10
2911 3131 8.484641 TTCAACAATCTATTCTGTCATGTCTC 57.515 34.615 0.00 0.00 0.00 3.36
2912 3132 8.853077 TTTCAACAATCTATTCTGTCATGTCT 57.147 30.769 0.00 0.00 0.00 3.41
2913 3133 8.939929 TCTTTCAACAATCTATTCTGTCATGTC 58.060 33.333 0.00 0.00 0.00 3.06
2914 3134 8.853077 TCTTTCAACAATCTATTCTGTCATGT 57.147 30.769 0.00 0.00 0.00 3.21
2915 3135 9.770503 CTTCTTTCAACAATCTATTCTGTCATG 57.229 33.333 0.00 0.00 0.00 3.07
2916 3136 9.730705 TCTTCTTTCAACAATCTATTCTGTCAT 57.269 29.630 0.00 0.00 0.00 3.06
2917 3137 9.559732 TTCTTCTTTCAACAATCTATTCTGTCA 57.440 29.630 0.00 0.00 0.00 3.58
2919 3139 9.784531 TCTTCTTCTTTCAACAATCTATTCTGT 57.215 29.630 0.00 0.00 0.00 3.41
2926 3146 8.970859 TCTTCTTCTTCTTCTTTCAACAATCT 57.029 30.769 0.00 0.00 0.00 2.40
2929 3149 7.970614 GCTTTCTTCTTCTTCTTCTTTCAACAA 59.029 33.333 0.00 0.00 0.00 2.83
2930 3150 7.121168 TGCTTTCTTCTTCTTCTTCTTTCAACA 59.879 33.333 0.00 0.00 0.00 3.33
2931 3151 7.475840 TGCTTTCTTCTTCTTCTTCTTTCAAC 58.524 34.615 0.00 0.00 0.00 3.18
2932 3152 7.630242 TGCTTTCTTCTTCTTCTTCTTTCAA 57.370 32.000 0.00 0.00 0.00 2.69
2933 3153 7.201767 CCTTGCTTTCTTCTTCTTCTTCTTTCA 60.202 37.037 0.00 0.00 0.00 2.69
2934 3154 7.012799 TCCTTGCTTTCTTCTTCTTCTTCTTTC 59.987 37.037 0.00 0.00 0.00 2.62
2935 3155 6.830838 TCCTTGCTTTCTTCTTCTTCTTCTTT 59.169 34.615 0.00 0.00 0.00 2.52
2936 3156 6.360618 TCCTTGCTTTCTTCTTCTTCTTCTT 58.639 36.000 0.00 0.00 0.00 2.52
2937 3157 5.934781 TCCTTGCTTTCTTCTTCTTCTTCT 58.065 37.500 0.00 0.00 0.00 2.85
2938 3158 6.402011 CGATCCTTGCTTTCTTCTTCTTCTTC 60.402 42.308 0.00 0.00 0.00 2.87
2962 3182 4.638421 ACCTATCTGAACTCTGAAGTCTCG 59.362 45.833 0.00 0.00 33.48 4.04
3012 3232 4.335315 TCTTGAAGTCACAAATCACACCAC 59.665 41.667 0.00 0.00 0.00 4.16
3114 3335 4.637977 TCGCATTGCACACCAATCTAATAA 59.362 37.500 9.69 0.00 42.15 1.40
3115 3336 4.035091 GTCGCATTGCACACCAATCTAATA 59.965 41.667 9.69 0.00 42.15 0.98
3116 3337 3.016031 TCGCATTGCACACCAATCTAAT 58.984 40.909 9.69 0.00 42.15 1.73
3117 3338 2.161410 GTCGCATTGCACACCAATCTAA 59.839 45.455 9.69 0.00 42.15 2.10
3118 3339 1.737236 GTCGCATTGCACACCAATCTA 59.263 47.619 9.69 0.00 42.15 1.98
3119 3340 0.523072 GTCGCATTGCACACCAATCT 59.477 50.000 9.69 0.00 42.15 2.40
3120 3341 0.456653 GGTCGCATTGCACACCAATC 60.457 55.000 17.89 0.00 42.15 2.67
3121 3342 1.586028 GGTCGCATTGCACACCAAT 59.414 52.632 17.89 0.00 44.86 3.16
3122 3343 2.560119 GGGTCGCATTGCACACCAA 61.560 57.895 22.16 0.00 34.06 3.67
3123 3344 2.983030 GGGTCGCATTGCACACCA 60.983 61.111 22.16 0.00 34.06 4.17
3124 3345 2.081425 TTTGGGTCGCATTGCACACC 62.081 55.000 15.49 15.49 32.28 4.16
3125 3346 0.664166 CTTTGGGTCGCATTGCACAC 60.664 55.000 9.69 7.85 0.00 3.82
3126 3347 1.659233 CTTTGGGTCGCATTGCACA 59.341 52.632 9.69 0.00 0.00 4.57
3127 3348 1.734117 GCTTTGGGTCGCATTGCAC 60.734 57.895 9.69 6.11 0.00 4.57
3128 3349 1.462731 AAGCTTTGGGTCGCATTGCA 61.463 50.000 9.69 0.00 0.00 4.08
3129 3350 0.733909 GAAGCTTTGGGTCGCATTGC 60.734 55.000 0.00 0.00 0.00 3.56
3130 3351 0.883833 AGAAGCTTTGGGTCGCATTG 59.116 50.000 0.00 0.00 0.00 2.82
3131 3352 2.084546 GTAGAAGCTTTGGGTCGCATT 58.915 47.619 0.00 0.00 0.00 3.56
3132 3353 1.003118 TGTAGAAGCTTTGGGTCGCAT 59.997 47.619 0.00 0.00 0.00 4.73
3133 3354 0.394938 TGTAGAAGCTTTGGGTCGCA 59.605 50.000 0.00 0.00 0.00 5.10
3134 3355 1.079503 CTGTAGAAGCTTTGGGTCGC 58.920 55.000 0.00 0.00 0.00 5.19
3135 3356 2.069273 CACTGTAGAAGCTTTGGGTCG 58.931 52.381 0.00 0.00 0.00 4.79
3136 3357 3.067833 GTCACTGTAGAAGCTTTGGGTC 58.932 50.000 0.00 0.00 0.00 4.46
3137 3358 2.438021 TGTCACTGTAGAAGCTTTGGGT 59.562 45.455 0.00 0.00 0.00 4.51
3138 3359 3.070018 CTGTCACTGTAGAAGCTTTGGG 58.930 50.000 0.00 0.00 0.00 4.12
3139 3360 3.496130 CACTGTCACTGTAGAAGCTTTGG 59.504 47.826 0.00 0.00 0.00 3.28
3140 3361 4.371786 TCACTGTCACTGTAGAAGCTTTG 58.628 43.478 0.00 0.00 0.00 2.77
3141 3362 4.626042 CTCACTGTCACTGTAGAAGCTTT 58.374 43.478 0.00 0.00 0.00 3.51
3142 3363 3.553922 GCTCACTGTCACTGTAGAAGCTT 60.554 47.826 0.00 0.00 0.00 3.74
3143 3364 2.029470 GCTCACTGTCACTGTAGAAGCT 60.029 50.000 8.09 0.00 0.00 3.74
3144 3365 2.288457 TGCTCACTGTCACTGTAGAAGC 60.288 50.000 8.31 8.31 0.00 3.86
3145 3366 3.254411 TCTGCTCACTGTCACTGTAGAAG 59.746 47.826 0.00 0.00 0.00 2.85
3146 3367 3.222603 TCTGCTCACTGTCACTGTAGAA 58.777 45.455 0.00 0.00 0.00 2.10
3147 3368 2.863809 TCTGCTCACTGTCACTGTAGA 58.136 47.619 0.00 0.00 0.00 2.59
3148 3369 3.650070 TTCTGCTCACTGTCACTGTAG 57.350 47.619 0.00 0.00 0.00 2.74
3149 3370 4.400529 TTTTCTGCTCACTGTCACTGTA 57.599 40.909 0.00 0.00 0.00 2.74
3150 3371 2.988010 TTTCTGCTCACTGTCACTGT 57.012 45.000 0.00 0.00 0.00 3.55
3151 3372 3.624861 ACTTTTTCTGCTCACTGTCACTG 59.375 43.478 0.00 0.00 0.00 3.66
3152 3373 3.878778 ACTTTTTCTGCTCACTGTCACT 58.121 40.909 0.00 0.00 0.00 3.41
3153 3374 4.570772 TGTACTTTTTCTGCTCACTGTCAC 59.429 41.667 0.00 0.00 0.00 3.67
3154 3375 4.765273 TGTACTTTTTCTGCTCACTGTCA 58.235 39.130 0.00 0.00 0.00 3.58
3155 3376 5.523916 TCTTGTACTTTTTCTGCTCACTGTC 59.476 40.000 0.00 0.00 0.00 3.51
3156 3377 5.428253 TCTTGTACTTTTTCTGCTCACTGT 58.572 37.500 0.00 0.00 0.00 3.55
3157 3378 5.525378 ACTCTTGTACTTTTTCTGCTCACTG 59.475 40.000 0.00 0.00 0.00 3.66
3158 3379 5.675538 ACTCTTGTACTTTTTCTGCTCACT 58.324 37.500 0.00 0.00 0.00 3.41
3159 3380 5.993106 ACTCTTGTACTTTTTCTGCTCAC 57.007 39.130 0.00 0.00 0.00 3.51
3160 3381 8.500753 TTAAACTCTTGTACTTTTTCTGCTCA 57.499 30.769 0.00 0.00 0.00 4.26
3163 3384 9.827411 CCTATTAAACTCTTGTACTTTTTCTGC 57.173 33.333 0.00 0.00 0.00 4.26
3175 3396 9.774742 GCTGTTGTAAATCCTATTAAACTCTTG 57.225 33.333 0.00 0.00 0.00 3.02
3176 3397 9.740710 AGCTGTTGTAAATCCTATTAAACTCTT 57.259 29.630 0.00 0.00 0.00 2.85
3177 3398 9.740710 AAGCTGTTGTAAATCCTATTAAACTCT 57.259 29.630 0.00 0.00 0.00 3.24
3178 3399 9.989869 GAAGCTGTTGTAAATCCTATTAAACTC 57.010 33.333 0.00 0.00 0.00 3.01
3179 3400 9.515226 TGAAGCTGTTGTAAATCCTATTAAACT 57.485 29.630 0.00 0.00 0.00 2.66
3185 3406 8.612619 CGTTTATGAAGCTGTTGTAAATCCTAT 58.387 33.333 0.00 0.00 0.00 2.57
3186 3407 7.413657 GCGTTTATGAAGCTGTTGTAAATCCTA 60.414 37.037 0.00 0.00 0.00 2.94
3187 3408 6.622896 GCGTTTATGAAGCTGTTGTAAATCCT 60.623 38.462 0.00 0.00 0.00 3.24
3188 3409 5.511729 GCGTTTATGAAGCTGTTGTAAATCC 59.488 40.000 0.00 0.00 0.00 3.01
3189 3410 5.511729 GGCGTTTATGAAGCTGTTGTAAATC 59.488 40.000 0.00 0.00 0.00 2.17
3190 3411 5.048364 TGGCGTTTATGAAGCTGTTGTAAAT 60.048 36.000 0.00 0.00 0.00 1.40
3191 3412 4.276183 TGGCGTTTATGAAGCTGTTGTAAA 59.724 37.500 0.00 0.00 0.00 2.01
3192 3413 3.815962 TGGCGTTTATGAAGCTGTTGTAA 59.184 39.130 0.00 0.00 0.00 2.41
3193 3414 3.403968 TGGCGTTTATGAAGCTGTTGTA 58.596 40.909 0.00 0.00 0.00 2.41
3194 3415 2.226330 TGGCGTTTATGAAGCTGTTGT 58.774 42.857 0.00 0.00 0.00 3.32
3195 3416 2.987413 TGGCGTTTATGAAGCTGTTG 57.013 45.000 0.00 0.00 0.00 3.33
3196 3417 3.347216 AGATGGCGTTTATGAAGCTGTT 58.653 40.909 0.00 0.00 0.00 3.16
3197 3418 2.991250 AGATGGCGTTTATGAAGCTGT 58.009 42.857 0.00 0.00 0.00 4.40
3198 3419 5.065218 ACTTTAGATGGCGTTTATGAAGCTG 59.935 40.000 0.00 0.00 0.00 4.24
3199 3420 5.186198 ACTTTAGATGGCGTTTATGAAGCT 58.814 37.500 0.00 0.00 0.00 3.74
3200 3421 5.485662 ACTTTAGATGGCGTTTATGAAGC 57.514 39.130 0.00 0.00 0.00 3.86
3201 3422 7.807907 ACAAAACTTTAGATGGCGTTTATGAAG 59.192 33.333 0.00 0.00 0.00 3.02
3202 3423 7.653647 ACAAAACTTTAGATGGCGTTTATGAA 58.346 30.769 0.00 0.00 0.00 2.57
3203 3424 7.209471 ACAAAACTTTAGATGGCGTTTATGA 57.791 32.000 0.00 0.00 0.00 2.15
3204 3425 8.958175 TTACAAAACTTTAGATGGCGTTTATG 57.042 30.769 0.00 0.00 0.00 1.90
3205 3426 9.401873 GTTTACAAAACTTTAGATGGCGTTTAT 57.598 29.630 0.00 0.00 0.00 1.40
3206 3427 8.623030 AGTTTACAAAACTTTAGATGGCGTTTA 58.377 29.630 0.00 0.00 0.00 2.01
3207 3428 7.485810 AGTTTACAAAACTTTAGATGGCGTTT 58.514 30.769 0.00 0.00 0.00 3.60
3208 3429 7.034685 AGTTTACAAAACTTTAGATGGCGTT 57.965 32.000 0.00 0.00 0.00 4.84
3209 3430 6.628919 AGTTTACAAAACTTTAGATGGCGT 57.371 33.333 0.00 0.00 0.00 5.68
3210 3431 6.915843 ACAAGTTTACAAAACTTTAGATGGCG 59.084 34.615 13.60 4.82 38.32 5.69
3211 3432 8.539674 CAACAAGTTTACAAAACTTTAGATGGC 58.460 33.333 13.60 0.00 38.32 4.40
3212 3433 9.581099 ACAACAAGTTTACAAAACTTTAGATGG 57.419 29.630 13.60 5.97 38.32 3.51
3218 3439 9.361315 GTCCATACAACAAGTTTACAAAACTTT 57.639 29.630 13.60 4.35 38.32 2.66
3219 3440 7.698970 CGTCCATACAACAAGTTTACAAAACTT 59.301 33.333 11.08 11.08 40.80 2.66
3220 3441 7.148205 ACGTCCATACAACAAGTTTACAAAACT 60.148 33.333 0.00 0.00 0.00 2.66
3221 3442 6.968335 ACGTCCATACAACAAGTTTACAAAAC 59.032 34.615 0.00 0.00 0.00 2.43
3222 3443 7.086230 ACGTCCATACAACAAGTTTACAAAA 57.914 32.000 0.00 0.00 0.00 2.44
3223 3444 6.315642 TGACGTCCATACAACAAGTTTACAAA 59.684 34.615 14.12 0.00 0.00 2.83
3224 3445 5.816258 TGACGTCCATACAACAAGTTTACAA 59.184 36.000 14.12 0.00 0.00 2.41
3225 3446 5.234757 GTGACGTCCATACAACAAGTTTACA 59.765 40.000 14.12 0.00 0.00 2.41
3226 3447 5.333568 GGTGACGTCCATACAACAAGTTTAC 60.334 44.000 14.12 0.00 0.00 2.01
3227 3448 4.751098 GGTGACGTCCATACAACAAGTTTA 59.249 41.667 14.12 0.00 0.00 2.01
3228 3449 3.562557 GGTGACGTCCATACAACAAGTTT 59.437 43.478 14.12 0.00 0.00 2.66
3229 3450 3.135994 GGTGACGTCCATACAACAAGTT 58.864 45.455 14.12 0.00 0.00 2.66
3230 3451 2.549349 GGGTGACGTCCATACAACAAGT 60.549 50.000 14.12 0.00 0.00 3.16
3231 3452 2.073816 GGGTGACGTCCATACAACAAG 58.926 52.381 14.12 0.00 0.00 3.16
3232 3453 1.416772 TGGGTGACGTCCATACAACAA 59.583 47.619 14.12 0.00 0.00 2.83
3233 3454 1.049402 TGGGTGACGTCCATACAACA 58.951 50.000 14.12 5.21 0.00 3.33
3234 3455 2.172851 TTGGGTGACGTCCATACAAC 57.827 50.000 14.12 2.77 33.82 3.32
3235 3456 2.932855 TTTGGGTGACGTCCATACAA 57.067 45.000 14.12 10.20 33.82 2.41
3236 3457 4.447290 CATATTTGGGTGACGTCCATACA 58.553 43.478 14.12 4.16 33.82 2.29
3237 3458 3.250040 GCATATTTGGGTGACGTCCATAC 59.750 47.826 14.12 4.39 33.82 2.39
3238 3459 3.472652 GCATATTTGGGTGACGTCCATA 58.527 45.455 14.12 0.00 33.82 2.74
3239 3460 2.297701 GCATATTTGGGTGACGTCCAT 58.702 47.619 14.12 0.00 33.82 3.41
3240 3461 1.680555 GGCATATTTGGGTGACGTCCA 60.681 52.381 14.12 0.87 0.00 4.02
3241 3462 1.021968 GGCATATTTGGGTGACGTCC 58.978 55.000 14.12 4.20 0.00 4.79
3242 3463 1.745232 TGGCATATTTGGGTGACGTC 58.255 50.000 9.11 9.11 0.00 4.34
3243 3464 2.435372 ATGGCATATTTGGGTGACGT 57.565 45.000 0.00 0.00 0.00 4.34
3244 3465 3.799281 AAATGGCATATTTGGGTGACG 57.201 42.857 0.00 0.00 0.00 4.35
3245 3466 5.083533 TGAAAATGGCATATTTGGGTGAC 57.916 39.130 0.00 0.00 0.00 3.67
3246 3467 5.662208 AGATGAAAATGGCATATTTGGGTGA 59.338 36.000 0.00 0.00 0.00 4.02
3247 3468 5.920903 AGATGAAAATGGCATATTTGGGTG 58.079 37.500 0.00 0.00 0.00 4.61
3248 3469 5.901276 AGAGATGAAAATGGCATATTTGGGT 59.099 36.000 0.00 0.00 0.00 4.51
3249 3470 6.183360 ACAGAGATGAAAATGGCATATTTGGG 60.183 38.462 0.00 0.00 0.00 4.12
3250 3471 6.812998 ACAGAGATGAAAATGGCATATTTGG 58.187 36.000 0.00 0.00 0.00 3.28
3251 3472 9.806203 TTAACAGAGATGAAAATGGCATATTTG 57.194 29.630 0.00 0.00 0.00 2.32
3252 3473 9.807649 GTTAACAGAGATGAAAATGGCATATTT 57.192 29.630 0.00 3.91 0.00 1.40
3253 3474 8.416329 GGTTAACAGAGATGAAAATGGCATATT 58.584 33.333 8.10 0.00 0.00 1.28
3254 3475 7.014615 GGGTTAACAGAGATGAAAATGGCATAT 59.985 37.037 8.10 0.00 0.00 1.78
3255 3476 6.321181 GGGTTAACAGAGATGAAAATGGCATA 59.679 38.462 8.10 0.00 0.00 3.14
3256 3477 5.127682 GGGTTAACAGAGATGAAAATGGCAT 59.872 40.000 8.10 0.00 0.00 4.40
3257 3478 4.462483 GGGTTAACAGAGATGAAAATGGCA 59.538 41.667 8.10 0.00 0.00 4.92
3258 3479 4.142160 GGGGTTAACAGAGATGAAAATGGC 60.142 45.833 8.10 0.00 0.00 4.40
3259 3480 5.016173 TGGGGTTAACAGAGATGAAAATGG 58.984 41.667 8.10 0.00 0.00 3.16
3260 3481 5.945784 TCTGGGGTTAACAGAGATGAAAATG 59.054 40.000 8.10 0.00 39.87 2.32
3261 3482 6.139679 TCTGGGGTTAACAGAGATGAAAAT 57.860 37.500 8.10 0.00 39.87 1.82
3262 3483 5.576563 TCTGGGGTTAACAGAGATGAAAA 57.423 39.130 8.10 0.00 39.87 2.29
3263 3484 5.313712 GTTCTGGGGTTAACAGAGATGAAA 58.686 41.667 8.10 0.00 44.91 2.69
3264 3485 4.263331 GGTTCTGGGGTTAACAGAGATGAA 60.263 45.833 8.10 1.58 44.91 2.57
3265 3486 3.263425 GGTTCTGGGGTTAACAGAGATGA 59.737 47.826 8.10 0.00 44.91 2.92
3266 3487 3.264450 AGGTTCTGGGGTTAACAGAGATG 59.736 47.826 8.10 0.00 44.91 2.90
3267 3488 3.519913 GAGGTTCTGGGGTTAACAGAGAT 59.480 47.826 8.10 0.00 44.91 2.75
3268 3489 2.904434 GAGGTTCTGGGGTTAACAGAGA 59.096 50.000 8.10 2.36 44.91 3.10
3269 3490 2.637872 TGAGGTTCTGGGGTTAACAGAG 59.362 50.000 8.10 0.00 44.91 3.35
3270 3491 2.370849 GTGAGGTTCTGGGGTTAACAGA 59.629 50.000 8.10 0.00 42.81 3.41
3271 3492 2.105821 TGTGAGGTTCTGGGGTTAACAG 59.894 50.000 8.10 0.00 37.30 3.16
3272 3493 2.128535 TGTGAGGTTCTGGGGTTAACA 58.871 47.619 8.10 0.00 0.00 2.41
3273 3494 2.882761 GTTGTGAGGTTCTGGGGTTAAC 59.117 50.000 0.00 0.00 0.00 2.01
3274 3495 2.510382 TGTTGTGAGGTTCTGGGGTTAA 59.490 45.455 0.00 0.00 0.00 2.01
3275 3496 2.128535 TGTTGTGAGGTTCTGGGGTTA 58.871 47.619 0.00 0.00 0.00 2.85
3276 3497 0.923358 TGTTGTGAGGTTCTGGGGTT 59.077 50.000 0.00 0.00 0.00 4.11
3277 3498 1.149101 ATGTTGTGAGGTTCTGGGGT 58.851 50.000 0.00 0.00 0.00 4.95
3278 3499 2.292828 AATGTTGTGAGGTTCTGGGG 57.707 50.000 0.00 0.00 0.00 4.96
3279 3500 3.636300 TGAAAATGTTGTGAGGTTCTGGG 59.364 43.478 0.00 0.00 0.00 4.45
3280 3501 4.916983 TGAAAATGTTGTGAGGTTCTGG 57.083 40.909 0.00 0.00 0.00 3.86
3281 3502 5.464168 GGATGAAAATGTTGTGAGGTTCTG 58.536 41.667 0.00 0.00 0.00 3.02
3282 3503 4.216257 CGGATGAAAATGTTGTGAGGTTCT 59.784 41.667 0.00 0.00 0.00 3.01
3283 3504 4.023193 ACGGATGAAAATGTTGTGAGGTTC 60.023 41.667 0.00 0.00 0.00 3.62
3284 3505 3.888930 ACGGATGAAAATGTTGTGAGGTT 59.111 39.130 0.00 0.00 0.00 3.50
3285 3506 3.253188 CACGGATGAAAATGTTGTGAGGT 59.747 43.478 0.00 0.00 0.00 3.85
3286 3507 3.253188 ACACGGATGAAAATGTTGTGAGG 59.747 43.478 0.00 0.00 0.00 3.86
3287 3508 4.488126 ACACGGATGAAAATGTTGTGAG 57.512 40.909 0.00 0.00 0.00 3.51
3288 3509 4.909696 AACACGGATGAAAATGTTGTGA 57.090 36.364 0.00 0.00 34.08 3.58
3289 3510 6.074569 GGTTTAACACGGATGAAAATGTTGTG 60.075 38.462 0.00 0.00 36.05 3.33
3290 3511 5.980715 GGTTTAACACGGATGAAAATGTTGT 59.019 36.000 0.00 0.00 36.05 3.32
3291 3512 5.404066 GGGTTTAACACGGATGAAAATGTTG 59.596 40.000 0.00 0.00 36.05 3.33
3292 3513 5.069251 TGGGTTTAACACGGATGAAAATGTT 59.931 36.000 0.00 0.00 38.72 2.71
3293 3514 4.585162 TGGGTTTAACACGGATGAAAATGT 59.415 37.500 0.00 0.00 0.00 2.71
3294 3515 5.127693 TGGGTTTAACACGGATGAAAATG 57.872 39.130 0.00 0.00 0.00 2.32
3295 3516 5.714806 AGATGGGTTTAACACGGATGAAAAT 59.285 36.000 0.00 0.00 0.00 1.82
3296 3517 5.074115 AGATGGGTTTAACACGGATGAAAA 58.926 37.500 0.00 0.00 0.00 2.29
3297 3518 4.658063 AGATGGGTTTAACACGGATGAAA 58.342 39.130 0.00 0.00 0.00 2.69
3298 3519 4.295141 AGATGGGTTTAACACGGATGAA 57.705 40.909 0.00 0.00 0.00 2.57
3299 3520 3.992943 AGATGGGTTTAACACGGATGA 57.007 42.857 0.00 0.00 0.00 2.92
3300 3521 5.183228 ACTTAGATGGGTTTAACACGGATG 58.817 41.667 0.00 0.00 0.00 3.51
3301 3522 5.431179 ACTTAGATGGGTTTAACACGGAT 57.569 39.130 0.00 0.00 0.00 4.18
3302 3523 4.895668 ACTTAGATGGGTTTAACACGGA 57.104 40.909 0.00 0.00 0.00 4.69
3303 3524 5.952526 AAACTTAGATGGGTTTAACACGG 57.047 39.130 0.00 0.00 34.44 4.94
3304 3525 6.731164 ACAAAACTTAGATGGGTTTAACACG 58.269 36.000 0.00 0.00 35.02 4.49
3311 3532 9.582648 ACAAGTTATACAAAACTTAGATGGGTT 57.417 29.630 1.96 0.00 45.59 4.11
3312 3533 9.582648 AACAAGTTATACAAAACTTAGATGGGT 57.417 29.630 1.96 0.00 45.59 4.51
3313 3534 9.840427 CAACAAGTTATACAAAACTTAGATGGG 57.160 33.333 1.96 0.00 45.59 4.00
3314 3535 9.341899 GCAACAAGTTATACAAAACTTAGATGG 57.658 33.333 1.96 0.00 45.59 3.51
3315 3536 9.891828 TGCAACAAGTTATACAAAACTTAGATG 57.108 29.630 1.96 3.79 45.59 2.90
3317 3538 9.891828 CATGCAACAAGTTATACAAAACTTAGA 57.108 29.630 0.00 0.00 45.59 2.10
3318 3539 9.128107 CCATGCAACAAGTTATACAAAACTTAG 57.872 33.333 0.00 1.12 45.59 2.18
3319 3540 8.085296 CCCATGCAACAAGTTATACAAAACTTA 58.915 33.333 0.00 0.00 45.59 2.24
3321 3542 6.266558 TCCCATGCAACAAGTTATACAAAACT 59.733 34.615 0.00 0.00 41.46 2.66
3322 3543 6.451393 TCCCATGCAACAAGTTATACAAAAC 58.549 36.000 0.00 0.00 0.00 2.43
3323 3544 6.656632 TCCCATGCAACAAGTTATACAAAA 57.343 33.333 0.00 0.00 0.00 2.44
3324 3545 6.629128 CATCCCATGCAACAAGTTATACAAA 58.371 36.000 0.00 0.00 0.00 2.83
3325 3546 6.206395 CATCCCATGCAACAAGTTATACAA 57.794 37.500 0.00 0.00 0.00 2.41
3326 3547 5.833406 CATCCCATGCAACAAGTTATACA 57.167 39.130 0.00 0.00 0.00 2.29
3340 3561 4.261489 GCTCTTAGTTCATTGCATCCCATG 60.261 45.833 0.00 0.00 0.00 3.66
3341 3562 3.887716 GCTCTTAGTTCATTGCATCCCAT 59.112 43.478 0.00 0.00 0.00 4.00
3342 3563 3.282021 GCTCTTAGTTCATTGCATCCCA 58.718 45.455 0.00 0.00 0.00 4.37
3343 3564 3.282021 TGCTCTTAGTTCATTGCATCCC 58.718 45.455 0.00 0.00 0.00 3.85
3344 3565 5.105834 GATGCTCTTAGTTCATTGCATCC 57.894 43.478 12.90 0.00 46.17 3.51
3720 3941 3.089784 CGACTGGGCCGATTTTCG 58.910 61.111 0.00 0.00 40.07 3.46
3721 3942 2.791927 GCGACTGGGCCGATTTTC 59.208 61.111 0.00 0.00 0.00 2.29
3722 3943 3.124921 CGCGACTGGGCCGATTTT 61.125 61.111 0.00 0.00 0.00 1.82
3732 3953 4.717629 TTCGTGGAGGCGCGACTG 62.718 66.667 25.24 4.38 36.82 3.51
3733 3954 4.719369 GTTCGTGGAGGCGCGACT 62.719 66.667 18.34 18.34 36.82 4.18
3734 3955 4.719369 AGTTCGTGGAGGCGCGAC 62.719 66.667 12.10 7.34 36.82 5.19
3735 3956 4.415332 GAGTTCGTGGAGGCGCGA 62.415 66.667 12.10 0.00 35.17 5.87
3753 3974 2.564458 CCCAAACCGGCGCTAAAC 59.436 61.111 7.64 0.00 0.00 2.01
3754 3975 3.366915 GCCCAAACCGGCGCTAAA 61.367 61.111 7.64 0.00 39.64 1.85
3760 3981 1.265905 CTATATTTCGCCCAAACCGGC 59.734 52.381 0.00 0.00 46.13 6.13
3761 3982 2.841215 TCTATATTTCGCCCAAACCGG 58.159 47.619 0.00 0.00 0.00 5.28
3762 3983 3.002965 GGTTCTATATTTCGCCCAAACCG 59.997 47.826 0.00 0.00 0.00 4.44
3763 3984 3.002965 CGGTTCTATATTTCGCCCAAACC 59.997 47.826 0.00 0.00 33.26 3.27
3764 3985 3.002965 CCGGTTCTATATTTCGCCCAAAC 59.997 47.826 0.00 0.00 0.00 2.93
3765 3986 3.207778 CCGGTTCTATATTTCGCCCAAA 58.792 45.455 0.00 0.00 0.00 3.28
3766 3987 2.841215 CCGGTTCTATATTTCGCCCAA 58.159 47.619 0.00 0.00 0.00 4.12
3767 3988 1.541670 GCCGGTTCTATATTTCGCCCA 60.542 52.381 1.90 0.00 0.00 5.36
3768 3989 1.154197 GCCGGTTCTATATTTCGCCC 58.846 55.000 1.90 0.00 0.00 6.13
3769 3990 0.788391 CGCCGGTTCTATATTTCGCC 59.212 55.000 1.90 0.00 0.00 5.54
3770 3991 1.774639 TCGCCGGTTCTATATTTCGC 58.225 50.000 1.90 0.00 0.00 4.70
3771 3992 2.921754 GGATCGCCGGTTCTATATTTCG 59.078 50.000 1.90 0.00 0.00 3.46
3772 3993 3.259902 GGGATCGCCGGTTCTATATTTC 58.740 50.000 1.90 0.00 33.83 2.17
3773 3994 2.353406 CGGGATCGCCGGTTCTATATTT 60.353 50.000 1.90 0.00 33.83 1.40
3774 3995 1.203994 CGGGATCGCCGGTTCTATATT 59.796 52.381 1.90 0.00 33.83 1.28
3775 3996 0.815734 CGGGATCGCCGGTTCTATAT 59.184 55.000 1.90 0.00 33.83 0.86
3776 3997 2.260247 CGGGATCGCCGGTTCTATA 58.740 57.895 1.90 0.00 33.83 1.31
3777 3998 3.048602 CGGGATCGCCGGTTCTAT 58.951 61.111 1.90 0.00 33.83 1.98
3830 4051 2.429069 CTTTTCGCTTGTGCCGGC 60.429 61.111 22.73 22.73 35.36 6.13
3831 4052 2.429069 GCTTTTCGCTTGTGCCGG 60.429 61.111 0.00 0.00 35.36 6.13
3832 4053 2.796617 CGCTTTTCGCTTGTGCCG 60.797 61.111 0.00 0.00 36.13 5.69
3833 4054 2.429069 CCGCTTTTCGCTTGTGCC 60.429 61.111 0.00 0.00 36.73 5.01
3834 4055 3.099574 GCCGCTTTTCGCTTGTGC 61.100 61.111 0.00 0.00 36.73 4.57
3835 4056 2.796617 CGCCGCTTTTCGCTTGTG 60.797 61.111 0.00 0.00 36.73 3.33
3836 4057 3.276846 ACGCCGCTTTTCGCTTGT 61.277 55.556 0.00 0.00 36.73 3.16
3837 4058 2.796617 CACGCCGCTTTTCGCTTG 60.797 61.111 0.00 0.00 36.73 4.01
3838 4059 4.025401 CCACGCCGCTTTTCGCTT 62.025 61.111 0.00 0.00 36.73 4.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.