Multiple sequence alignment - TraesCS3D01G056100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G056100 chr3D 100.000 3549 0 0 1 3549 23175786 23172238 0.000000e+00 6554.0
1 TraesCS3D01G056100 chr3D 83.553 608 50 17 2021 2582 23195842 23195239 1.130000e-144 523.0
2 TraesCS3D01G056100 chr3D 83.002 453 49 11 1194 1619 23064744 23064293 5.560000e-103 385.0
3 TraesCS3D01G056100 chr3D 80.632 475 74 8 321 783 504376 503908 5.640000e-93 351.0
4 TraesCS3D01G056100 chr3D 79.493 473 68 16 322 775 106683894 106683432 3.440000e-80 309.0
5 TraesCS3D01G056100 chr3D 84.615 273 26 8 1729 1999 23196179 23195921 1.260000e-64 257.0
6 TraesCS3D01G056100 chr3D 80.137 292 56 2 488 779 384560440 384560729 2.150000e-52 217.0
7 TraesCS3D01G056100 chr3D 92.958 142 9 1 3016 3156 61184578 61184719 4.640000e-49 206.0
8 TraesCS3D01G056100 chr3D 92.414 145 10 1 3014 3157 300566853 300566997 4.640000e-49 206.0
9 TraesCS3D01G056100 chr3D 77.129 411 57 17 318 704 529501862 529502259 1.670000e-48 204.0
10 TraesCS3D01G056100 chr3D 81.301 246 29 12 2662 2891 23195074 23194830 2.180000e-42 183.0
11 TraesCS3D01G056100 chr3D 75.281 445 69 21 323 726 173396611 173396167 1.310000e-39 174.0
12 TraesCS3D01G056100 chr3D 94.495 109 3 3 3401 3506 23194334 23194226 7.880000e-37 165.0
13 TraesCS3D01G056100 chr3D 94.595 74 4 0 3156 3229 23194714 23194641 8.050000e-22 115.0
14 TraesCS3D01G056100 chr3B 93.166 1595 63 18 1101 2657 40866944 40865358 0.000000e+00 2300.0
15 TraesCS3D01G056100 chr3B 90.138 507 30 12 2665 3157 40865291 40864791 2.990000e-180 641.0
16 TraesCS3D01G056100 chr3B 82.148 717 62 28 1997 2654 40908960 40908251 4.000000e-154 555.0
17 TraesCS3D01G056100 chr3B 83.242 364 43 16 2662 3017 40908193 40907840 5.720000e-83 318.0
18 TraesCS3D01G056100 chr3B 84.192 291 10 11 3295 3549 40864520 40864230 2.120000e-62 250.0
19 TraesCS3D01G056100 chr3B 77.149 477 77 19 325 779 693471054 693470588 7.610000e-62 248.0
20 TraesCS3D01G056100 chr3B 93.836 146 7 2 3014 3157 420877286 420877141 5.970000e-53 219.0
21 TraesCS3D01G056100 chr3B 83.193 238 9 11 3298 3508 40907558 40907325 4.680000e-44 189.0
22 TraesCS3D01G056100 chr3B 91.667 120 3 4 3158 3270 40864742 40864623 3.670000e-35 159.0
23 TraesCS3D01G056100 chr3B 92.157 102 7 1 6 106 40867325 40867224 3.690000e-30 143.0
24 TraesCS3D01G056100 chr3B 94.595 74 4 0 3156 3229 40907799 40907726 8.050000e-22 115.0
25 TraesCS3D01G056100 chr3B 90.909 66 2 3 1016 1080 40867006 40866944 6.310000e-13 86.1
26 TraesCS3D01G056100 chr3A 89.338 1088 63 18 779 1855 32253432 32252387 0.000000e+00 1317.0
27 TraesCS3D01G056100 chr3A 86.861 1096 58 19 779 1855 731227559 731226531 0.000000e+00 1147.0
28 TraesCS3D01G056100 chr3A 88.873 710 32 7 1986 2654 32252323 32251620 0.000000e+00 830.0
29 TraesCS3D01G056100 chr3A 86.926 719 35 15 1986 2654 731226467 731225758 0.000000e+00 752.0
30 TraesCS3D01G056100 chr3A 83.488 648 52 24 1984 2582 32385751 32385110 1.440000e-153 553.0
31 TraesCS3D01G056100 chr3A 94.576 295 16 0 2723 3017 32251478 32251184 1.160000e-124 457.0
32 TraesCS3D01G056100 chr3A 84.667 450 44 10 1194 1619 32153003 32152555 3.270000e-115 425.0
33 TraesCS3D01G056100 chr3A 95.736 258 8 2 3295 3549 32250941 32250684 2.550000e-111 412.0
34 TraesCS3D01G056100 chr3A 82.418 364 45 17 2662 3017 32384921 32384569 2.070000e-77 300.0
35 TraesCS3D01G056100 chr3A 88.163 245 17 6 951 1194 32286238 32286005 7.500000e-72 281.0
36 TraesCS3D01G056100 chr3A 83.986 281 28 8 1723 1999 32386056 32385789 1.640000e-63 254.0
37 TraesCS3D01G056100 chr3A 85.897 234 8 10 3298 3506 32384298 32384065 3.560000e-55 226.0
38 TraesCS3D01G056100 chr3A 92.414 145 10 1 3014 3157 434850225 434850081 4.640000e-49 206.0
39 TraesCS3D01G056100 chr3A 82.528 269 8 11 2662 2909 731225700 731225450 2.160000e-47 200.0
40 TraesCS3D01G056100 chr3A 92.523 107 8 0 3164 3270 32251144 32251038 1.710000e-33 154.0
41 TraesCS3D01G056100 chr3A 94.595 74 4 0 3156 3229 32384540 32384467 8.050000e-22 115.0
42 TraesCS3D01G056100 chr3A 94.203 69 2 2 2662 2728 32251562 32251494 1.740000e-18 104.0
43 TraesCS3D01G056100 chr3A 91.781 73 6 0 3157 3229 731225339 731225267 6.270000e-18 102.0
44 TraesCS3D01G056100 chr3A 100.000 49 0 0 1891 1939 731226533 731226485 1.360000e-14 91.6
45 TraesCS3D01G056100 chr3A 95.918 49 2 0 1891 1939 32252389 32252341 2.940000e-11 80.5
46 TraesCS3D01G056100 chr7D 91.076 437 36 1 1163 1599 157758721 157758288 3.950000e-164 588.0
47 TraesCS3D01G056100 chr7D 88.571 70 6 2 599 667 446508991 446509059 2.270000e-12 84.2
48 TraesCS3D01G056100 chr1D 82.561 453 51 11 1194 1619 225396657 225397108 1.200000e-99 374.0
49 TraesCS3D01G056100 chr1D 80.357 392 50 11 321 699 458283847 458283470 4.510000e-69 272.0
50 TraesCS3D01G056100 chr1D 80.214 187 30 6 2053 2232 375646705 375646519 2.220000e-27 134.0
51 TraesCS3D01G056100 chr1A 81.360 397 47 11 321 704 550833767 550833385 7.450000e-77 298.0
52 TraesCS3D01G056100 chr1A 81.111 180 28 5 2075 2248 474450712 474450533 4.780000e-29 139.0
53 TraesCS3D01G056100 chr5D 77.935 494 70 18 315 784 483724299 483724777 4.510000e-69 272.0
54 TraesCS3D01G056100 chr5D 88.235 102 12 0 488 589 415266471 415266572 4.810000e-24 122.0
55 TraesCS3D01G056100 chr4B 77.706 462 71 15 322 779 544251593 544252026 1.640000e-63 254.0
56 TraesCS3D01G056100 chr4B 77.686 121 23 4 549 667 472838414 472838532 1.770000e-08 71.3
57 TraesCS3D01G056100 chr2B 82.313 294 38 6 321 601 159102549 159102841 3.540000e-60 243.0
58 TraesCS3D01G056100 chr6A 76.421 475 93 11 315 779 217647430 217647895 4.580000e-59 239.0
59 TraesCS3D01G056100 chr7B 77.724 413 59 14 315 706 483223529 483223929 4.610000e-54 222.0
60 TraesCS3D01G056100 chr7B 87.500 72 9 0 596 667 181356462 181356533 2.270000e-12 84.2
61 TraesCS3D01G056100 chr7A 93.197 147 9 1 3012 3157 130229537 130229683 7.720000e-52 215.0
62 TraesCS3D01G056100 chr7A 93.103 145 9 1 3014 3157 137770397 137770541 9.980000e-51 211.0
63 TraesCS3D01G056100 chr4D 91.837 147 10 2 3016 3160 428383406 428383552 1.670000e-48 204.0
64 TraesCS3D01G056100 chr2D 90.850 153 11 3 3014 3164 29624508 29624357 6.010000e-48 202.0
65 TraesCS3D01G056100 chr2D 80.335 239 30 9 321 544 460630795 460630559 7.880000e-37 165.0
66 TraesCS3D01G056100 chr1B 80.711 197 28 8 2060 2248 499896494 499896688 1.030000e-30 145.0
67 TraesCS3D01G056100 chr1B 90.164 61 3 3 609 667 390280539 390280480 3.800000e-10 76.8
68 TraesCS3D01G056100 chr1B 97.297 37 0 1 800 836 399210922 399210887 1.060000e-05 62.1
69 TraesCS3D01G056100 chr6D 84.416 77 9 3 592 667 460484270 460484344 4.910000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G056100 chr3D 23172238 23175786 3548 True 6554.000000 6554 100.000000 1 3549 1 chr3D.!!$R3 3548
1 TraesCS3D01G056100 chr3D 23194226 23196179 1953 True 248.600000 523 87.711800 1729 3506 5 chr3D.!!$R6 1777
2 TraesCS3D01G056100 chr3B 40864230 40867325 3095 True 596.516667 2300 90.371500 6 3549 6 chr3B.!!$R3 3543
3 TraesCS3D01G056100 chr3B 40907325 40908960 1635 True 294.250000 555 85.794500 1997 3508 4 chr3B.!!$R4 1511
4 TraesCS3D01G056100 chr3A 32250684 32253432 2748 True 479.214286 1317 93.023857 779 3549 7 chr3A.!!$R4 2770
5 TraesCS3D01G056100 chr3A 731225267 731227559 2292 True 458.520000 1147 89.619200 779 3229 5 chr3A.!!$R6 2450
6 TraesCS3D01G056100 chr3A 32384065 32386056 1991 True 289.600000 553 86.076800 1723 3506 5 chr3A.!!$R5 1783

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.025513 CAAGCGCACGAGCATTCTAC 59.974 55.0 11.47 0.0 42.27 2.59 F
491 626 0.033228 GGAGGAGTGGATGATGCGAG 59.967 60.0 0.00 0.0 0.00 5.03 F
768 903 0.106149 GGATACGATTGGTCCGGCTT 59.894 55.0 0.00 0.0 0.00 4.35 F
777 912 0.178068 TGGTCCGGCTTTAGATGCTC 59.822 55.0 0.00 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1105 1251 2.137523 GACGAGGATAGAGGAGACGAC 58.862 57.143 0.00 0.0 0.00 4.34 R
2336 2632 2.030562 CGGCGAACTGAAGGGTGT 59.969 61.111 0.00 0.0 0.00 4.16 R
2338 2634 2.657237 CTCGGCGAACTGAAGGGT 59.343 61.111 12.13 0.0 0.00 4.34 R
2659 3063 5.881443 TCACTTGACAATGTGCATGATCATA 59.119 36.000 8.15 0.0 34.49 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 0.025513 CAAGCGCACGAGCATTCTAC 59.974 55.000 11.47 0.00 42.27 2.59
133 146 1.161843 AAGGGCGTTACCGTCATTTG 58.838 50.000 0.00 0.00 40.06 2.32
135 148 0.445043 GGGCGTTACCGTCATTTGTC 59.555 55.000 0.00 0.00 41.51 3.18
140 153 2.997303 CGTTACCGTCATTTGTCATGGA 59.003 45.455 0.00 0.00 0.00 3.41
142 155 4.094294 CGTTACCGTCATTTGTCATGGAAT 59.906 41.667 0.00 0.00 0.00 3.01
143 156 5.569413 GTTACCGTCATTTGTCATGGAATC 58.431 41.667 0.00 0.00 0.00 2.52
144 157 3.684908 ACCGTCATTTGTCATGGAATCA 58.315 40.909 0.00 0.00 0.00 2.57
145 158 4.272489 ACCGTCATTTGTCATGGAATCAT 58.728 39.130 0.00 0.00 0.00 2.45
167 302 2.233305 ACCGGCCAGACCCTATATAG 57.767 55.000 0.00 2.46 33.26 1.31
184 319 7.392113 CCCTATATAGAGGCTATCCTTGTATCG 59.608 44.444 11.53 0.00 44.46 2.92
186 321 9.344772 CTATATAGAGGCTATCCTTGTATCGTT 57.655 37.037 3.44 0.00 44.46 3.85
188 323 3.961408 AGAGGCTATCCTTGTATCGTTGT 59.039 43.478 0.00 0.00 44.46 3.32
190 325 5.597182 AGAGGCTATCCTTGTATCGTTGTTA 59.403 40.000 0.00 0.00 44.46 2.41
191 326 6.097839 AGAGGCTATCCTTGTATCGTTGTTAA 59.902 38.462 0.00 0.00 44.46 2.01
192 327 6.281405 AGGCTATCCTTGTATCGTTGTTAAG 58.719 40.000 0.00 0.00 40.66 1.85
193 328 5.050295 GGCTATCCTTGTATCGTTGTTAAGC 60.050 44.000 0.00 0.00 0.00 3.09
194 329 5.753921 GCTATCCTTGTATCGTTGTTAAGCT 59.246 40.000 0.00 0.00 0.00 3.74
195 330 6.074249 GCTATCCTTGTATCGTTGTTAAGCTC 60.074 42.308 0.00 0.00 0.00 4.09
196 331 5.142061 TCCTTGTATCGTTGTTAAGCTCA 57.858 39.130 0.00 0.00 0.00 4.26
197 332 5.168569 TCCTTGTATCGTTGTTAAGCTCAG 58.831 41.667 0.00 0.00 0.00 3.35
198 333 5.047590 TCCTTGTATCGTTGTTAAGCTCAGA 60.048 40.000 0.00 0.00 0.00 3.27
199 334 5.637810 CCTTGTATCGTTGTTAAGCTCAGAA 59.362 40.000 0.00 0.00 0.00 3.02
200 335 6.313905 CCTTGTATCGTTGTTAAGCTCAGAAT 59.686 38.462 0.00 0.00 0.00 2.40
201 336 7.148407 CCTTGTATCGTTGTTAAGCTCAGAATT 60.148 37.037 0.00 0.00 0.00 2.17
202 337 7.290857 TGTATCGTTGTTAAGCTCAGAATTC 57.709 36.000 0.00 0.00 0.00 2.17
203 338 6.871492 TGTATCGTTGTTAAGCTCAGAATTCA 59.129 34.615 8.44 0.00 0.00 2.57
211 346 2.880443 AGCTCAGAATTCAAAGCCCAA 58.120 42.857 21.67 0.00 35.32 4.12
225 360 8.927675 TTCAAAGCCCAAAGTTTATCTACTTA 57.072 30.769 0.00 0.00 37.37 2.24
226 361 9.528489 TTCAAAGCCCAAAGTTTATCTACTTAT 57.472 29.630 0.00 0.00 37.37 1.73
227 362 9.174166 TCAAAGCCCAAAGTTTATCTACTTATC 57.826 33.333 0.00 0.00 37.37 1.75
228 363 9.178758 CAAAGCCCAAAGTTTATCTACTTATCT 57.821 33.333 0.00 0.00 37.37 1.98
229 364 9.755122 AAAGCCCAAAGTTTATCTACTTATCTT 57.245 29.630 0.00 0.00 37.37 2.40
230 365 8.738645 AGCCCAAAGTTTATCTACTTATCTTG 57.261 34.615 0.00 0.00 37.37 3.02
231 366 8.329502 AGCCCAAAGTTTATCTACTTATCTTGT 58.670 33.333 0.00 0.00 37.37 3.16
232 367 8.957466 GCCCAAAGTTTATCTACTTATCTTGTT 58.043 33.333 0.00 0.00 37.37 2.83
234 369 9.774742 CCAAAGTTTATCTACTTATCTTGTTGC 57.225 33.333 0.00 0.00 37.37 4.17
242 377 8.798859 ATCTACTTATCTTGTTGCATTTCAGT 57.201 30.769 0.00 0.00 0.00 3.41
243 378 8.621532 TCTACTTATCTTGTTGCATTTCAGTT 57.378 30.769 0.00 0.00 0.00 3.16
244 379 8.721478 TCTACTTATCTTGTTGCATTTCAGTTC 58.279 33.333 0.00 0.00 0.00 3.01
245 380 7.516198 ACTTATCTTGTTGCATTTCAGTTCT 57.484 32.000 0.00 0.00 0.00 3.01
246 381 7.945134 ACTTATCTTGTTGCATTTCAGTTCTT 58.055 30.769 0.00 0.00 0.00 2.52
247 382 8.416329 ACTTATCTTGTTGCATTTCAGTTCTTT 58.584 29.630 0.00 0.00 0.00 2.52
248 383 9.897744 CTTATCTTGTTGCATTTCAGTTCTTTA 57.102 29.630 0.00 0.00 0.00 1.85
251 386 9.768662 ATCTTGTTGCATTTCAGTTCTTTAATT 57.231 25.926 0.00 0.00 0.00 1.40
252 387 9.598517 TCTTGTTGCATTTCAGTTCTTTAATTT 57.401 25.926 0.00 0.00 0.00 1.82
253 388 9.853921 CTTGTTGCATTTCAGTTCTTTAATTTC 57.146 29.630 0.00 0.00 0.00 2.17
254 389 8.364129 TGTTGCATTTCAGTTCTTTAATTTCC 57.636 30.769 0.00 0.00 0.00 3.13
255 390 7.984050 TGTTGCATTTCAGTTCTTTAATTTCCA 59.016 29.630 0.00 0.00 0.00 3.53
256 391 8.490355 GTTGCATTTCAGTTCTTTAATTTCCAG 58.510 33.333 0.00 0.00 0.00 3.86
257 392 7.725251 TGCATTTCAGTTCTTTAATTTCCAGT 58.275 30.769 0.00 0.00 0.00 4.00
258 393 8.855110 TGCATTTCAGTTCTTTAATTTCCAGTA 58.145 29.630 0.00 0.00 0.00 2.74
259 394 9.691362 GCATTTCAGTTCTTTAATTTCCAGTAA 57.309 29.630 0.00 0.00 0.00 2.24
275 410 9.927081 ATTTCCAGTAATTTATCCTGTTCATCT 57.073 29.630 0.00 0.00 0.00 2.90
276 411 8.964476 TTCCAGTAATTTATCCTGTTCATCTC 57.036 34.615 0.00 0.00 0.00 2.75
277 412 7.509546 TCCAGTAATTTATCCTGTTCATCTCC 58.490 38.462 0.00 0.00 0.00 3.71
278 413 7.348274 TCCAGTAATTTATCCTGTTCATCTCCT 59.652 37.037 0.00 0.00 0.00 3.69
279 414 7.659390 CCAGTAATTTATCCTGTTCATCTCCTC 59.341 40.741 0.00 0.00 0.00 3.71
280 415 8.428063 CAGTAATTTATCCTGTTCATCTCCTCT 58.572 37.037 0.00 0.00 0.00 3.69
281 416 9.661954 AGTAATTTATCCTGTTCATCTCCTCTA 57.338 33.333 0.00 0.00 0.00 2.43
284 419 7.546250 TTTATCCTGTTCATCTCCTCTATCC 57.454 40.000 0.00 0.00 0.00 2.59
285 420 4.823364 TCCTGTTCATCTCCTCTATCCT 57.177 45.455 0.00 0.00 0.00 3.24
286 421 4.735369 TCCTGTTCATCTCCTCTATCCTC 58.265 47.826 0.00 0.00 0.00 3.71
287 422 3.505680 CCTGTTCATCTCCTCTATCCTCG 59.494 52.174 0.00 0.00 0.00 4.63
288 423 4.141287 CTGTTCATCTCCTCTATCCTCGT 58.859 47.826 0.00 0.00 0.00 4.18
289 424 5.306114 TGTTCATCTCCTCTATCCTCGTA 57.694 43.478 0.00 0.00 0.00 3.43
290 425 5.691896 TGTTCATCTCCTCTATCCTCGTAA 58.308 41.667 0.00 0.00 0.00 3.18
291 426 6.127101 TGTTCATCTCCTCTATCCTCGTAAA 58.873 40.000 0.00 0.00 0.00 2.01
292 427 6.263392 TGTTCATCTCCTCTATCCTCGTAAAG 59.737 42.308 0.00 0.00 0.00 1.85
293 428 6.189036 TCATCTCCTCTATCCTCGTAAAGA 57.811 41.667 0.00 0.00 0.00 2.52
294 429 6.785076 TCATCTCCTCTATCCTCGTAAAGAT 58.215 40.000 0.00 0.00 0.00 2.40
295 430 6.882140 TCATCTCCTCTATCCTCGTAAAGATC 59.118 42.308 0.00 0.00 0.00 2.75
296 431 6.189036 TCTCCTCTATCCTCGTAAAGATCA 57.811 41.667 0.00 0.00 0.00 2.92
297 432 6.234920 TCTCCTCTATCCTCGTAAAGATCAG 58.765 44.000 0.00 0.00 0.00 2.90
298 433 6.043358 TCTCCTCTATCCTCGTAAAGATCAGA 59.957 42.308 0.00 0.00 0.00 3.27
299 434 6.785076 TCCTCTATCCTCGTAAAGATCAGAT 58.215 40.000 0.00 0.00 0.00 2.90
300 435 7.235079 TCCTCTATCCTCGTAAAGATCAGATT 58.765 38.462 0.00 0.00 0.00 2.40
301 436 7.726291 TCCTCTATCCTCGTAAAGATCAGATTT 59.274 37.037 0.00 0.00 0.00 2.17
302 437 8.364142 CCTCTATCCTCGTAAAGATCAGATTTT 58.636 37.037 0.00 0.00 0.00 1.82
303 438 9.757227 CTCTATCCTCGTAAAGATCAGATTTTT 57.243 33.333 4.44 4.44 0.00 1.94
304 439 9.534565 TCTATCCTCGTAAAGATCAGATTTTTG 57.465 33.333 8.82 0.00 0.00 2.44
305 440 9.319143 CTATCCTCGTAAAGATCAGATTTTTGT 57.681 33.333 8.82 0.00 0.00 2.83
306 441 7.596749 TCCTCGTAAAGATCAGATTTTTGTC 57.403 36.000 8.82 2.58 0.00 3.18
307 442 6.594159 TCCTCGTAAAGATCAGATTTTTGTCC 59.406 38.462 8.82 0.00 0.00 4.02
308 443 6.595716 CCTCGTAAAGATCAGATTTTTGTCCT 59.404 38.462 8.82 0.00 0.00 3.85
309 444 7.201565 CCTCGTAAAGATCAGATTTTTGTCCTC 60.202 40.741 8.82 0.00 0.00 3.71
310 445 7.386851 TCGTAAAGATCAGATTTTTGTCCTCT 58.613 34.615 8.82 0.00 0.00 3.69
311 446 7.545965 TCGTAAAGATCAGATTTTTGTCCTCTC 59.454 37.037 8.82 0.00 0.00 3.20
312 447 7.201565 CGTAAAGATCAGATTTTTGTCCTCTCC 60.202 40.741 8.82 0.00 0.00 3.71
313 448 6.385766 AAGATCAGATTTTTGTCCTCTCCT 57.614 37.500 0.00 0.00 0.00 3.69
314 449 5.988287 AGATCAGATTTTTGTCCTCTCCTC 58.012 41.667 0.00 0.00 0.00 3.71
315 450 4.193826 TCAGATTTTTGTCCTCTCCTCG 57.806 45.455 0.00 0.00 0.00 4.63
316 451 3.578716 TCAGATTTTTGTCCTCTCCTCGT 59.421 43.478 0.00 0.00 0.00 4.18
317 452 3.929610 CAGATTTTTGTCCTCTCCTCGTC 59.070 47.826 0.00 0.00 0.00 4.20
318 453 2.433868 TTTTTGTCCTCTCCTCGTCG 57.566 50.000 0.00 0.00 0.00 5.12
319 454 1.612676 TTTTGTCCTCTCCTCGTCGA 58.387 50.000 0.00 0.00 0.00 4.20
320 455 0.879765 TTTGTCCTCTCCTCGTCGAC 59.120 55.000 5.18 5.18 0.00 4.20
321 456 1.296755 TTGTCCTCTCCTCGTCGACG 61.297 60.000 31.30 31.30 41.45 5.12
322 457 2.818714 TCCTCTCCTCGTCGACGC 60.819 66.667 32.19 0.00 39.60 5.19
323 458 4.225340 CCTCTCCTCGTCGACGCG 62.225 72.222 32.19 26.29 39.60 6.01
324 459 4.225340 CTCTCCTCGTCGACGCGG 62.225 72.222 34.99 34.99 44.89 6.46
348 483 2.024871 CGACGACGCTCCAGATCC 59.975 66.667 0.00 0.00 0.00 3.36
349 484 2.024871 GACGACGCTCCAGATCCG 59.975 66.667 0.00 0.00 0.00 4.18
350 485 3.471244 GACGACGCTCCAGATCCGG 62.471 68.421 0.00 0.00 0.00 5.14
351 486 3.209812 CGACGCTCCAGATCCGGA 61.210 66.667 6.61 6.61 0.00 5.14
358 493 0.808125 CTCCAGATCCGGAGCTATCG 59.192 60.000 24.15 12.91 45.95 2.92
359 494 1.214062 CCAGATCCGGAGCTATCGC 59.786 63.158 24.15 0.00 0.00 4.58
368 503 4.686695 AGCTATCGCTGGTCTCCA 57.313 55.556 0.00 0.00 46.86 3.86
369 504 2.119886 AGCTATCGCTGGTCTCCAC 58.880 57.895 0.00 0.00 46.86 4.02
370 505 1.068250 GCTATCGCTGGTCTCCACC 59.932 63.158 0.00 0.00 44.10 4.61
371 506 1.395826 GCTATCGCTGGTCTCCACCT 61.396 60.000 0.00 0.00 44.17 4.00
372 507 1.115467 CTATCGCTGGTCTCCACCTT 58.885 55.000 0.00 0.00 44.17 3.50
373 508 0.824109 TATCGCTGGTCTCCACCTTG 59.176 55.000 0.00 0.00 44.17 3.61
374 509 1.903877 ATCGCTGGTCTCCACCTTGG 61.904 60.000 0.00 0.00 44.17 3.61
375 510 2.583441 CGCTGGTCTCCACCTTGGA 61.583 63.158 0.00 0.00 45.98 3.53
376 511 1.003233 GCTGGTCTCCACCTTGGAC 60.003 63.158 0.00 0.00 42.67 4.02
377 512 1.679898 CTGGTCTCCACCTTGGACC 59.320 63.158 0.00 0.00 42.67 4.46
378 513 2.663196 GGTCTCCACCTTGGACCG 59.337 66.667 0.00 0.00 42.67 4.79
379 514 2.047179 GTCTCCACCTTGGACCGC 60.047 66.667 0.00 0.00 42.67 5.68
380 515 2.203788 TCTCCACCTTGGACCGCT 60.204 61.111 0.00 0.00 42.67 5.52
381 516 2.266055 CTCCACCTTGGACCGCTC 59.734 66.667 0.00 0.00 42.67 5.03
382 517 2.203788 TCCACCTTGGACCGCTCT 60.204 61.111 0.00 0.00 42.67 4.09
383 518 0.970937 CTCCACCTTGGACCGCTCTA 60.971 60.000 0.00 0.00 42.67 2.43
384 519 0.970937 TCCACCTTGGACCGCTCTAG 60.971 60.000 0.00 0.00 42.67 2.43
385 520 1.153549 CACCTTGGACCGCTCTAGC 60.154 63.158 0.00 0.00 37.78 3.42
403 538 3.599704 GCAATGCGGAGGGCCATC 61.600 66.667 9.46 9.46 42.61 3.51
404 539 2.194056 CAATGCGGAGGGCCATCT 59.806 61.111 18.35 0.00 42.61 2.90
405 540 1.895707 CAATGCGGAGGGCCATCTC 60.896 63.158 18.35 9.00 42.61 2.75
411 546 3.884318 GAGGGCCATCTCCTCCTC 58.116 66.667 10.91 0.00 43.71 3.71
412 547 2.123077 AGGGCCATCTCCTCCTCG 60.123 66.667 6.18 0.00 0.00 4.63
413 548 2.444895 GGGCCATCTCCTCCTCGT 60.445 66.667 4.39 0.00 0.00 4.18
414 549 1.152525 GGGCCATCTCCTCCTCGTA 60.153 63.158 4.39 0.00 0.00 3.43
415 550 1.182385 GGGCCATCTCCTCCTCGTAG 61.182 65.000 4.39 0.00 0.00 3.51
416 551 0.468400 GGCCATCTCCTCCTCGTAGT 60.468 60.000 0.00 0.00 0.00 2.73
417 552 0.955905 GCCATCTCCTCCTCGTAGTC 59.044 60.000 0.00 0.00 0.00 2.59
418 553 1.231221 CCATCTCCTCCTCGTAGTCG 58.769 60.000 0.00 0.00 38.55 4.18
419 554 1.202663 CCATCTCCTCCTCGTAGTCGA 60.203 57.143 0.00 0.00 44.12 4.20
441 576 2.579201 CGAGCCGGAGTTGGTCAT 59.421 61.111 5.05 0.00 0.00 3.06
442 577 1.519455 CGAGCCGGAGTTGGTCATC 60.519 63.158 5.05 0.00 0.00 2.92
443 578 1.596934 GAGCCGGAGTTGGTCATCA 59.403 57.895 5.05 0.00 0.00 3.07
444 579 0.179000 GAGCCGGAGTTGGTCATCAT 59.821 55.000 5.05 0.00 0.00 2.45
445 580 1.412710 GAGCCGGAGTTGGTCATCATA 59.587 52.381 5.05 0.00 0.00 2.15
446 581 1.414181 AGCCGGAGTTGGTCATCATAG 59.586 52.381 5.05 0.00 0.00 2.23
447 582 1.139058 GCCGGAGTTGGTCATCATAGT 59.861 52.381 5.05 0.00 0.00 2.12
448 583 2.826428 CCGGAGTTGGTCATCATAGTG 58.174 52.381 0.00 0.00 0.00 2.74
449 584 2.483714 CCGGAGTTGGTCATCATAGTGG 60.484 54.545 0.00 0.00 0.00 4.00
450 585 2.430694 CGGAGTTGGTCATCATAGTGGA 59.569 50.000 0.00 0.00 0.00 4.02
451 586 3.070159 CGGAGTTGGTCATCATAGTGGAT 59.930 47.826 0.00 0.00 0.00 3.41
452 587 4.384056 GGAGTTGGTCATCATAGTGGATG 58.616 47.826 0.00 0.00 44.78 3.51
453 588 4.141620 GGAGTTGGTCATCATAGTGGATGT 60.142 45.833 0.00 0.00 44.00 3.06
454 589 4.774124 AGTTGGTCATCATAGTGGATGTG 58.226 43.478 0.00 0.00 44.00 3.21
455 590 4.471025 AGTTGGTCATCATAGTGGATGTGA 59.529 41.667 0.00 0.00 44.00 3.58
456 591 5.131642 AGTTGGTCATCATAGTGGATGTGAT 59.868 40.000 0.00 0.00 44.00 3.06
457 592 5.219343 TGGTCATCATAGTGGATGTGATC 57.781 43.478 0.00 0.00 44.00 2.92
458 593 4.240888 GGTCATCATAGTGGATGTGATCG 58.759 47.826 0.00 0.00 44.00 3.69
459 594 4.240888 GTCATCATAGTGGATGTGATCGG 58.759 47.826 0.00 0.00 44.00 4.18
460 595 4.021981 GTCATCATAGTGGATGTGATCGGA 60.022 45.833 0.00 0.00 44.00 4.55
461 596 4.588528 TCATCATAGTGGATGTGATCGGAA 59.411 41.667 0.00 0.00 44.00 4.30
462 597 5.246883 TCATCATAGTGGATGTGATCGGAAT 59.753 40.000 0.00 0.00 44.00 3.01
463 598 5.139435 TCATAGTGGATGTGATCGGAATC 57.861 43.478 0.00 0.00 36.84 2.52
464 599 4.588528 TCATAGTGGATGTGATCGGAATCA 59.411 41.667 4.94 0.00 35.52 2.57
465 600 3.465742 AGTGGATGTGATCGGAATCAG 57.534 47.619 4.94 0.00 42.53 2.90
466 601 2.103771 AGTGGATGTGATCGGAATCAGG 59.896 50.000 4.94 0.00 42.53 3.86
467 602 1.417517 TGGATGTGATCGGAATCAGGG 59.582 52.381 4.94 0.00 42.53 4.45
468 603 1.694150 GGATGTGATCGGAATCAGGGA 59.306 52.381 4.94 0.00 42.53 4.20
469 604 2.289320 GGATGTGATCGGAATCAGGGAG 60.289 54.545 4.94 0.00 42.53 4.30
470 605 1.123077 TGTGATCGGAATCAGGGAGG 58.877 55.000 0.00 0.00 42.53 4.30
471 606 0.394565 GTGATCGGAATCAGGGAGGG 59.605 60.000 0.00 0.00 42.53 4.30
472 607 0.764369 TGATCGGAATCAGGGAGGGG 60.764 60.000 0.00 0.00 36.98 4.79
473 608 1.462238 ATCGGAATCAGGGAGGGGG 60.462 63.158 0.00 0.00 0.00 5.40
474 609 1.973346 ATCGGAATCAGGGAGGGGGA 61.973 60.000 0.00 0.00 0.00 4.81
475 610 2.143419 CGGAATCAGGGAGGGGGAG 61.143 68.421 0.00 0.00 0.00 4.30
476 611 1.772156 GGAATCAGGGAGGGGGAGG 60.772 68.421 0.00 0.00 0.00 4.30
477 612 1.318380 GAATCAGGGAGGGGGAGGA 59.682 63.158 0.00 0.00 0.00 3.71
478 613 0.766288 GAATCAGGGAGGGGGAGGAG 60.766 65.000 0.00 0.00 0.00 3.69
479 614 1.541168 AATCAGGGAGGGGGAGGAGT 61.541 60.000 0.00 0.00 0.00 3.85
480 615 2.263099 ATCAGGGAGGGGGAGGAGTG 62.263 65.000 0.00 0.00 0.00 3.51
481 616 3.700350 AGGGAGGGGGAGGAGTGG 61.700 72.222 0.00 0.00 0.00 4.00
482 617 3.695825 GGGAGGGGGAGGAGTGGA 61.696 72.222 0.00 0.00 0.00 4.02
483 618 2.706071 GGAGGGGGAGGAGTGGAT 59.294 66.667 0.00 0.00 0.00 3.41
484 619 1.768077 GGAGGGGGAGGAGTGGATG 60.768 68.421 0.00 0.00 0.00 3.51
485 620 1.314867 GAGGGGGAGGAGTGGATGA 59.685 63.158 0.00 0.00 0.00 2.92
486 621 0.104725 GAGGGGGAGGAGTGGATGAT 60.105 60.000 0.00 0.00 0.00 2.45
487 622 0.401105 AGGGGGAGGAGTGGATGATG 60.401 60.000 0.00 0.00 0.00 3.07
488 623 1.453669 GGGGAGGAGTGGATGATGC 59.546 63.158 0.00 0.00 0.00 3.91
489 624 1.070445 GGGAGGAGTGGATGATGCG 59.930 63.158 0.00 0.00 0.00 4.73
490 625 1.402896 GGGAGGAGTGGATGATGCGA 61.403 60.000 0.00 0.00 0.00 5.10
491 626 0.033228 GGAGGAGTGGATGATGCGAG 59.967 60.000 0.00 0.00 0.00 5.03
492 627 1.035923 GAGGAGTGGATGATGCGAGA 58.964 55.000 0.00 0.00 0.00 4.04
493 628 1.000385 GAGGAGTGGATGATGCGAGAG 60.000 57.143 0.00 0.00 0.00 3.20
494 629 1.035923 GGAGTGGATGATGCGAGAGA 58.964 55.000 0.00 0.00 0.00 3.10
495 630 1.000385 GGAGTGGATGATGCGAGAGAG 60.000 57.143 0.00 0.00 0.00 3.20
496 631 1.952990 GAGTGGATGATGCGAGAGAGA 59.047 52.381 0.00 0.00 0.00 3.10
497 632 1.955778 AGTGGATGATGCGAGAGAGAG 59.044 52.381 0.00 0.00 0.00 3.20
498 633 1.680735 GTGGATGATGCGAGAGAGAGT 59.319 52.381 0.00 0.00 0.00 3.24
499 634 1.680207 TGGATGATGCGAGAGAGAGTG 59.320 52.381 0.00 0.00 0.00 3.51
500 635 1.952990 GGATGATGCGAGAGAGAGTGA 59.047 52.381 0.00 0.00 0.00 3.41
501 636 2.030893 GGATGATGCGAGAGAGAGTGAG 60.031 54.545 0.00 0.00 0.00 3.51
502 637 0.737804 TGATGCGAGAGAGAGTGAGC 59.262 55.000 0.00 0.00 0.00 4.26
503 638 1.024271 GATGCGAGAGAGAGTGAGCT 58.976 55.000 0.00 0.00 0.00 4.09
504 639 2.217750 GATGCGAGAGAGAGTGAGCTA 58.782 52.381 0.00 0.00 0.00 3.32
505 640 1.662517 TGCGAGAGAGAGTGAGCTAG 58.337 55.000 0.00 0.00 0.00 3.42
506 641 0.944386 GCGAGAGAGAGTGAGCTAGG 59.056 60.000 0.00 0.00 0.00 3.02
507 642 1.593196 CGAGAGAGAGTGAGCTAGGG 58.407 60.000 0.00 0.00 0.00 3.53
508 643 1.134220 CGAGAGAGAGTGAGCTAGGGT 60.134 57.143 0.00 0.00 0.00 4.34
509 644 2.682563 CGAGAGAGAGTGAGCTAGGGTT 60.683 54.545 0.00 0.00 0.00 4.11
510 645 3.361786 GAGAGAGAGTGAGCTAGGGTTT 58.638 50.000 0.00 0.00 0.00 3.27
511 646 3.096092 AGAGAGAGTGAGCTAGGGTTTG 58.904 50.000 0.00 0.00 0.00 2.93
512 647 2.167487 GAGAGAGTGAGCTAGGGTTTGG 59.833 54.545 0.00 0.00 0.00 3.28
513 648 2.180276 GAGAGTGAGCTAGGGTTTGGA 58.820 52.381 0.00 0.00 0.00 3.53
514 649 2.167487 GAGAGTGAGCTAGGGTTTGGAG 59.833 54.545 0.00 0.00 0.00 3.86
515 650 0.615850 AGTGAGCTAGGGTTTGGAGC 59.384 55.000 0.00 0.00 36.42 4.70
516 651 0.741221 GTGAGCTAGGGTTTGGAGCG 60.741 60.000 0.00 0.00 41.23 5.03
517 652 0.902984 TGAGCTAGGGTTTGGAGCGA 60.903 55.000 0.00 0.00 41.23 4.93
518 653 0.179097 GAGCTAGGGTTTGGAGCGAG 60.179 60.000 0.00 0.00 41.23 5.03
519 654 1.153349 GCTAGGGTTTGGAGCGAGG 60.153 63.158 0.00 0.00 0.00 4.63
520 655 1.153349 CTAGGGTTTGGAGCGAGGC 60.153 63.158 0.00 0.00 0.00 4.70
521 656 2.907897 CTAGGGTTTGGAGCGAGGCG 62.908 65.000 0.00 0.00 0.00 5.52
542 677 2.559998 CCGAATTGGGATTTTCGTGG 57.440 50.000 0.00 0.00 42.31 4.94
543 678 1.134175 CCGAATTGGGATTTTCGTGGG 59.866 52.381 0.00 0.00 42.31 4.61
544 679 2.088423 CGAATTGGGATTTTCGTGGGA 58.912 47.619 0.00 0.00 39.77 4.37
545 680 2.159435 CGAATTGGGATTTTCGTGGGAC 60.159 50.000 0.00 0.00 39.77 4.46
546 681 2.595750 ATTGGGATTTTCGTGGGACA 57.404 45.000 0.00 0.00 0.00 4.02
547 682 1.904287 TTGGGATTTTCGTGGGACAG 58.096 50.000 0.00 0.00 41.80 3.51
548 683 0.768622 TGGGATTTTCGTGGGACAGT 59.231 50.000 0.00 0.00 41.80 3.55
549 684 1.144093 TGGGATTTTCGTGGGACAGTT 59.856 47.619 0.00 0.00 41.80 3.16
550 685 1.539827 GGGATTTTCGTGGGACAGTTG 59.460 52.381 0.00 0.00 41.80 3.16
551 686 1.068541 GGATTTTCGTGGGACAGTTGC 60.069 52.381 0.00 0.00 41.80 4.17
552 687 0.591170 ATTTTCGTGGGACAGTTGCG 59.409 50.000 0.00 0.00 41.80 4.85
553 688 1.440938 TTTTCGTGGGACAGTTGCGG 61.441 55.000 0.00 0.00 41.80 5.69
554 689 3.818121 TTCGTGGGACAGTTGCGGG 62.818 63.158 0.00 0.00 41.80 6.13
556 691 4.265056 GTGGGACAGTTGCGGGGT 62.265 66.667 0.00 0.00 41.80 4.95
557 692 3.948719 TGGGACAGTTGCGGGGTC 61.949 66.667 0.00 0.00 0.00 4.46
560 695 4.309950 GACAGTTGCGGGGTCGGT 62.310 66.667 0.00 0.00 36.79 4.69
561 696 4.619227 ACAGTTGCGGGGTCGGTG 62.619 66.667 0.00 0.00 36.79 4.94
579 714 3.948719 GTGGGTCGGGCCTGTCAA 61.949 66.667 12.43 0.00 37.43 3.18
580 715 3.636231 TGGGTCGGGCCTGTCAAG 61.636 66.667 12.43 0.00 37.43 3.02
605 740 4.615815 GCTCGAGCATGCCCGGAT 62.616 66.667 31.91 0.00 41.59 4.18
606 741 2.356793 CTCGAGCATGCCCGGATC 60.357 66.667 21.91 7.79 0.00 3.36
607 742 3.153781 TCGAGCATGCCCGGATCA 61.154 61.111 21.91 0.00 0.00 2.92
608 743 2.969238 CGAGCATGCCCGGATCAC 60.969 66.667 14.51 0.00 0.00 3.06
609 744 2.592861 GAGCATGCCCGGATCACC 60.593 66.667 15.66 0.00 0.00 4.02
610 745 4.195334 AGCATGCCCGGATCACCC 62.195 66.667 15.66 0.00 0.00 4.61
612 747 3.807839 CATGCCCGGATCACCCCA 61.808 66.667 0.73 0.00 0.00 4.96
613 748 2.778278 ATGCCCGGATCACCCCAT 60.778 61.111 0.73 0.00 0.00 4.00
614 749 1.463214 ATGCCCGGATCACCCCATA 60.463 57.895 0.73 0.00 0.00 2.74
615 750 0.846427 ATGCCCGGATCACCCCATAT 60.846 55.000 0.73 0.00 0.00 1.78
616 751 1.299976 GCCCGGATCACCCCATATC 59.700 63.158 0.73 0.00 0.00 1.63
617 752 1.991230 CCCGGATCACCCCATATCC 59.009 63.158 0.73 0.00 38.66 2.59
618 753 0.840288 CCCGGATCACCCCATATCCA 60.840 60.000 0.73 0.00 41.57 3.41
619 754 1.289160 CCGGATCACCCCATATCCAT 58.711 55.000 0.00 0.00 41.57 3.41
620 755 1.210478 CCGGATCACCCCATATCCATC 59.790 57.143 0.00 0.00 41.57 3.51
621 756 1.210478 CGGATCACCCCATATCCATCC 59.790 57.143 0.00 0.00 41.57 3.51
622 757 2.566746 GGATCACCCCATATCCATCCT 58.433 52.381 0.00 0.00 41.21 3.24
623 758 2.240667 GGATCACCCCATATCCATCCTG 59.759 54.545 0.00 0.00 41.21 3.86
624 759 2.512910 TCACCCCATATCCATCCTGT 57.487 50.000 0.00 0.00 0.00 4.00
625 760 3.646867 TCACCCCATATCCATCCTGTA 57.353 47.619 0.00 0.00 0.00 2.74
626 761 4.160542 TCACCCCATATCCATCCTGTAT 57.839 45.455 0.00 0.00 0.00 2.29
627 762 4.512298 TCACCCCATATCCATCCTGTATT 58.488 43.478 0.00 0.00 0.00 1.89
628 763 4.919510 TCACCCCATATCCATCCTGTATTT 59.080 41.667 0.00 0.00 0.00 1.40
629 764 5.012239 CACCCCATATCCATCCTGTATTTG 58.988 45.833 0.00 0.00 0.00 2.32
630 765 4.044571 ACCCCATATCCATCCTGTATTTGG 59.955 45.833 0.00 0.00 0.00 3.28
631 766 4.570505 CCCCATATCCATCCTGTATTTGGG 60.571 50.000 0.00 0.00 39.96 4.12
632 767 4.044571 CCCATATCCATCCTGTATTTGGGT 59.955 45.833 0.00 0.00 37.21 4.51
633 768 5.459536 CCCATATCCATCCTGTATTTGGGTT 60.460 44.000 0.00 0.00 37.21 4.11
634 769 5.477984 CCATATCCATCCTGTATTTGGGTTG 59.522 44.000 0.00 0.00 0.00 3.77
635 770 3.380471 TCCATCCTGTATTTGGGTTGG 57.620 47.619 0.00 0.00 41.42 3.77
636 771 2.922955 TCCATCCTGTATTTGGGTTGGA 59.077 45.455 7.46 7.46 44.50 3.53
637 772 3.531397 TCCATCCTGTATTTGGGTTGGAT 59.469 43.478 7.46 0.00 42.90 3.41
638 773 4.729370 TCCATCCTGTATTTGGGTTGGATA 59.271 41.667 7.46 0.00 42.90 2.59
639 774 5.375354 TCCATCCTGTATTTGGGTTGGATAT 59.625 40.000 7.46 0.00 42.90 1.63
640 775 5.477984 CCATCCTGTATTTGGGTTGGATATG 59.522 44.000 0.00 0.00 42.19 1.78
641 776 5.985175 TCCTGTATTTGGGTTGGATATGA 57.015 39.130 0.00 0.00 0.00 2.15
642 777 5.940617 TCCTGTATTTGGGTTGGATATGAG 58.059 41.667 0.00 0.00 0.00 2.90
643 778 5.072741 CCTGTATTTGGGTTGGATATGAGG 58.927 45.833 0.00 0.00 0.00 3.86
644 779 5.060427 TGTATTTGGGTTGGATATGAGGG 57.940 43.478 0.00 0.00 0.00 4.30
645 780 3.618120 ATTTGGGTTGGATATGAGGGG 57.382 47.619 0.00 0.00 0.00 4.79
646 781 1.994399 TTGGGTTGGATATGAGGGGT 58.006 50.000 0.00 0.00 0.00 4.95
647 782 2.899906 TGGGTTGGATATGAGGGGTA 57.100 50.000 0.00 0.00 0.00 3.69
648 783 2.414612 TGGGTTGGATATGAGGGGTAC 58.585 52.381 0.00 0.00 0.00 3.34
667 802 4.397832 GGTCAGCCCGGCCGTTTA 62.398 66.667 26.12 1.11 0.00 2.01
668 803 2.124860 GTCAGCCCGGCCGTTTAT 60.125 61.111 26.12 3.70 0.00 1.40
669 804 2.178235 GTCAGCCCGGCCGTTTATC 61.178 63.158 26.12 7.80 0.00 1.75
670 805 2.900337 CAGCCCGGCCGTTTATCC 60.900 66.667 26.12 5.12 0.00 2.59
671 806 4.540735 AGCCCGGCCGTTTATCCG 62.541 66.667 26.12 6.34 44.89 4.18
673 808 4.841861 CCCGGCCGTTTATCCGCA 62.842 66.667 26.12 0.00 44.01 5.69
674 809 3.269347 CCGGCCGTTTATCCGCAG 61.269 66.667 26.12 0.00 44.01 5.18
675 810 2.510691 CGGCCGTTTATCCGCAGT 60.511 61.111 19.50 0.00 39.14 4.40
676 811 2.104253 CGGCCGTTTATCCGCAGTT 61.104 57.895 19.50 0.00 39.14 3.16
677 812 1.427819 GGCCGTTTATCCGCAGTTG 59.572 57.895 0.00 0.00 0.00 3.16
678 813 1.427819 GCCGTTTATCCGCAGTTGG 59.572 57.895 0.00 0.00 0.00 3.77
679 814 1.022451 GCCGTTTATCCGCAGTTGGA 61.022 55.000 0.00 0.00 43.58 3.53
680 815 1.006832 CCGTTTATCCGCAGTTGGAG 58.993 55.000 0.00 0.00 42.45 3.86
681 816 1.404986 CCGTTTATCCGCAGTTGGAGA 60.405 52.381 0.00 0.00 42.45 3.71
682 817 1.927174 CGTTTATCCGCAGTTGGAGAG 59.073 52.381 0.00 0.00 42.45 3.20
683 818 2.674177 CGTTTATCCGCAGTTGGAGAGT 60.674 50.000 0.00 0.00 42.45 3.24
684 819 3.335579 GTTTATCCGCAGTTGGAGAGTT 58.664 45.455 0.00 0.00 42.45 3.01
685 820 3.695830 TTATCCGCAGTTGGAGAGTTT 57.304 42.857 0.00 0.00 42.45 2.66
686 821 2.100605 ATCCGCAGTTGGAGAGTTTC 57.899 50.000 0.00 0.00 42.45 2.78
687 822 0.319555 TCCGCAGTTGGAGAGTTTCG 60.320 55.000 0.00 0.00 33.05 3.46
688 823 1.291877 CCGCAGTTGGAGAGTTTCGG 61.292 60.000 0.00 0.00 0.00 4.30
689 824 0.600255 CGCAGTTGGAGAGTTTCGGT 60.600 55.000 0.00 0.00 0.00 4.69
690 825 1.594331 GCAGTTGGAGAGTTTCGGTT 58.406 50.000 0.00 0.00 0.00 4.44
691 826 1.264288 GCAGTTGGAGAGTTTCGGTTG 59.736 52.381 0.00 0.00 0.00 3.77
692 827 1.873591 CAGTTGGAGAGTTTCGGTTGG 59.126 52.381 0.00 0.00 0.00 3.77
693 828 1.766496 AGTTGGAGAGTTTCGGTTGGA 59.234 47.619 0.00 0.00 0.00 3.53
694 829 2.372172 AGTTGGAGAGTTTCGGTTGGAT 59.628 45.455 0.00 0.00 0.00 3.41
695 830 2.742589 GTTGGAGAGTTTCGGTTGGATC 59.257 50.000 0.00 0.00 0.00 3.36
696 831 1.067142 TGGAGAGTTTCGGTTGGATCG 60.067 52.381 0.00 0.00 0.00 3.69
697 832 1.203994 GGAGAGTTTCGGTTGGATCGA 59.796 52.381 0.00 0.00 34.62 3.59
698 833 2.159085 GGAGAGTTTCGGTTGGATCGAT 60.159 50.000 0.00 0.00 36.49 3.59
699 834 3.522553 GAGAGTTTCGGTTGGATCGATT 58.477 45.455 0.00 0.00 36.49 3.34
700 835 3.933332 GAGAGTTTCGGTTGGATCGATTT 59.067 43.478 0.00 0.00 36.49 2.17
701 836 4.324267 AGAGTTTCGGTTGGATCGATTTT 58.676 39.130 0.00 0.00 36.49 1.82
702 837 4.760204 AGAGTTTCGGTTGGATCGATTTTT 59.240 37.500 0.00 0.00 36.49 1.94
738 873 3.909662 CCAGATGGTTTGCCCGAG 58.090 61.111 0.00 0.00 35.15 4.63
739 874 2.409870 CCAGATGGTTTGCCCGAGC 61.410 63.158 0.00 0.00 40.48 5.03
740 875 2.436646 AGATGGTTTGCCCGAGCG 60.437 61.111 0.00 0.00 44.31 5.03
741 876 2.746277 GATGGTTTGCCCGAGCGT 60.746 61.111 0.00 0.00 44.31 5.07
742 877 2.746277 ATGGTTTGCCCGAGCGTC 60.746 61.111 0.00 0.00 44.31 5.19
743 878 3.254024 ATGGTTTGCCCGAGCGTCT 62.254 57.895 0.00 0.00 44.31 4.18
744 879 3.423154 GGTTTGCCCGAGCGTCTG 61.423 66.667 0.00 0.00 44.31 3.51
745 880 2.357034 GTTTGCCCGAGCGTCTGA 60.357 61.111 0.00 0.00 44.31 3.27
746 881 2.048222 TTTGCCCGAGCGTCTGAG 60.048 61.111 0.00 0.00 44.31 3.35
747 882 2.570284 TTTGCCCGAGCGTCTGAGA 61.570 57.895 0.00 0.00 44.31 3.27
748 883 2.765250 TTTGCCCGAGCGTCTGAGAC 62.765 60.000 1.65 1.65 44.31 3.36
766 901 4.355925 GGATACGATTGGTCCGGC 57.644 61.111 0.00 0.00 0.00 6.13
767 902 1.746517 GGATACGATTGGTCCGGCT 59.253 57.895 0.00 0.00 0.00 5.52
768 903 0.106149 GGATACGATTGGTCCGGCTT 59.894 55.000 0.00 0.00 0.00 4.35
769 904 1.474498 GGATACGATTGGTCCGGCTTT 60.474 52.381 0.00 0.00 0.00 3.51
770 905 2.224113 GGATACGATTGGTCCGGCTTTA 60.224 50.000 0.00 0.00 0.00 1.85
771 906 2.589798 TACGATTGGTCCGGCTTTAG 57.410 50.000 0.00 0.00 0.00 1.85
772 907 0.899720 ACGATTGGTCCGGCTTTAGA 59.100 50.000 0.00 0.00 0.00 2.10
773 908 1.485066 ACGATTGGTCCGGCTTTAGAT 59.515 47.619 0.00 0.00 0.00 1.98
774 909 1.867233 CGATTGGTCCGGCTTTAGATG 59.133 52.381 0.00 0.00 0.00 2.90
775 910 1.604278 GATTGGTCCGGCTTTAGATGC 59.396 52.381 0.00 0.00 0.00 3.91
776 911 0.618458 TTGGTCCGGCTTTAGATGCT 59.382 50.000 0.00 0.00 0.00 3.79
777 912 0.178068 TGGTCCGGCTTTAGATGCTC 59.822 55.000 0.00 0.00 0.00 4.26
787 922 4.570369 GGCTTTAGATGCTCTGAGAGAAAC 59.430 45.833 14.78 0.69 0.00 2.78
789 924 5.641209 GCTTTAGATGCTCTGAGAGAAACAA 59.359 40.000 14.78 0.00 0.00 2.83
792 927 5.938438 AGATGCTCTGAGAGAAACAAAAC 57.062 39.130 14.78 0.00 0.00 2.43
797 932 3.131396 TCTGAGAGAAACAAAACGAGCC 58.869 45.455 0.00 0.00 0.00 4.70
798 933 2.872245 CTGAGAGAAACAAAACGAGCCA 59.128 45.455 0.00 0.00 0.00 4.75
801 936 2.554032 AGAGAAACAAAACGAGCCATGG 59.446 45.455 7.63 7.63 0.00 3.66
802 937 2.552315 GAGAAACAAAACGAGCCATGGA 59.448 45.455 18.40 0.00 0.00 3.41
821 956 1.941294 GAGAACAGACGCGAGAGGATA 59.059 52.381 15.93 0.00 0.00 2.59
826 961 1.405821 CAGACGCGAGAGGATAAGGTT 59.594 52.381 15.93 0.00 0.00 3.50
836 971 5.335583 CGAGAGGATAAGGTTAGCTGAGATG 60.336 48.000 0.00 0.00 0.00 2.90
837 972 5.463154 AGAGGATAAGGTTAGCTGAGATGT 58.537 41.667 0.00 0.00 0.00 3.06
838 973 5.304101 AGAGGATAAGGTTAGCTGAGATGTG 59.696 44.000 0.00 0.00 0.00 3.21
839 974 4.965532 AGGATAAGGTTAGCTGAGATGTGT 59.034 41.667 0.00 0.00 0.00 3.72
840 975 6.136857 AGGATAAGGTTAGCTGAGATGTGTA 58.863 40.000 0.00 0.00 0.00 2.90
841 976 6.041069 AGGATAAGGTTAGCTGAGATGTGTAC 59.959 42.308 0.00 0.00 0.00 2.90
842 977 6.041069 GGATAAGGTTAGCTGAGATGTGTACT 59.959 42.308 0.00 0.00 0.00 2.73
843 978 7.230913 GGATAAGGTTAGCTGAGATGTGTACTA 59.769 40.741 0.00 0.00 0.00 1.82
844 979 8.713708 ATAAGGTTAGCTGAGATGTGTACTAT 57.286 34.615 0.00 0.00 0.00 2.12
887 1022 1.473257 GGCTGCATCCTACGATCACAA 60.473 52.381 0.50 0.00 0.00 3.33
888 1023 1.594862 GCTGCATCCTACGATCACAAC 59.405 52.381 0.00 0.00 0.00 3.32
889 1024 2.205074 CTGCATCCTACGATCACAACC 58.795 52.381 0.00 0.00 0.00 3.77
890 1025 1.552792 TGCATCCTACGATCACAACCA 59.447 47.619 0.00 0.00 0.00 3.67
891 1026 2.027653 TGCATCCTACGATCACAACCAA 60.028 45.455 0.00 0.00 0.00 3.67
892 1027 3.206150 GCATCCTACGATCACAACCAAT 58.794 45.455 0.00 0.00 0.00 3.16
893 1028 3.002656 GCATCCTACGATCACAACCAATG 59.997 47.826 0.00 0.00 0.00 2.82
894 1029 3.973206 TCCTACGATCACAACCAATGT 57.027 42.857 0.00 0.00 45.34 2.71
925 1060 3.141522 TTTCTCGTGTGACCGGCGT 62.142 57.895 6.01 0.00 0.00 5.68
959 1101 2.916702 TTCTCATGGGATGTCATCGG 57.083 50.000 0.00 0.00 0.00 4.18
978 1120 4.737578 TCGGCCAGACTCTATATAAAGGT 58.262 43.478 2.24 0.00 0.00 3.50
979 1121 4.765856 TCGGCCAGACTCTATATAAAGGTC 59.234 45.833 2.24 0.00 0.00 3.85
980 1122 4.767928 CGGCCAGACTCTATATAAAGGTCT 59.232 45.833 2.24 6.26 37.69 3.85
983 1125 5.186215 GCCAGACTCTATATAAAGGTCTCCC 59.814 48.000 8.19 0.00 35.43 4.30
993 1135 9.273137 CTATATAAAGGTCTCCCATCCTTGTAT 57.727 37.037 0.00 0.00 42.38 2.29
999 1141 4.392940 GTCTCCCATCCTTGTATCATTGG 58.607 47.826 0.00 0.00 0.00 3.16
1021 1163 5.772672 TGGTAAGCTAAGAAATCAAAGCCAA 59.227 36.000 0.00 0.00 35.54 4.52
1022 1164 6.266558 TGGTAAGCTAAGAAATCAAAGCCAAA 59.733 34.615 0.00 0.00 35.54 3.28
1023 1165 6.808704 GGTAAGCTAAGAAATCAAAGCCAAAG 59.191 38.462 0.00 0.00 35.54 2.77
1024 1166 6.410942 AAGCTAAGAAATCAAAGCCAAAGT 57.589 33.333 0.00 0.00 35.54 2.66
1025 1167 6.410942 AGCTAAGAAATCAAAGCCAAAGTT 57.589 33.333 0.00 0.00 35.54 2.66
1026 1168 6.820335 AGCTAAGAAATCAAAGCCAAAGTTT 58.180 32.000 0.00 0.00 35.54 2.66
1027 1169 7.951591 AGCTAAGAAATCAAAGCCAAAGTTTA 58.048 30.769 0.00 0.00 35.54 2.01
1028 1170 8.588472 AGCTAAGAAATCAAAGCCAAAGTTTAT 58.412 29.630 0.00 0.00 35.54 1.40
1029 1171 8.864024 GCTAAGAAATCAAAGCCAAAGTTTATC 58.136 33.333 0.00 0.00 0.00 1.75
1032 1174 9.914131 AAGAAATCAAAGCCAAAGTTTATCTAC 57.086 29.630 0.00 0.00 0.00 2.59
1033 1175 9.301897 AGAAATCAAAGCCAAAGTTTATCTACT 57.698 29.630 0.00 0.00 0.00 2.57
1034 1176 9.914131 GAAATCAAAGCCAAAGTTTATCTACTT 57.086 29.630 0.00 0.00 39.97 2.24
1038 1180 9.959721 TCAAAGCCAAAGTTTATCTACTTATCT 57.040 29.630 0.00 0.00 37.37 1.98
1105 1251 9.559732 TTGTTATCATACTACAATTCATCCTGG 57.440 33.333 0.00 0.00 0.00 4.45
1108 1254 5.842907 TCATACTACAATTCATCCTGGTCG 58.157 41.667 0.00 0.00 0.00 4.79
1353 1500 3.057547 CTCGTCCTCACAGCCTCCG 62.058 68.421 0.00 0.00 0.00 4.63
1770 1924 2.094078 GTGAGAGTGATTGCTCTGCTCT 60.094 50.000 0.00 0.00 45.03 4.09
1801 1955 5.346281 GTCATGCACAAGACTAGTTAGTGAC 59.654 44.000 20.60 14.26 36.50 3.67
1881 2073 6.156932 CTTTGCTAGCATTTAAAACTTGGC 57.843 37.500 20.13 2.90 0.00 4.52
1944 2136 9.793252 ATCTGAAACTGAATAAATTGTGTATGC 57.207 29.630 0.00 0.00 0.00 3.14
1948 2140 9.282247 GAAACTGAATAAATTGTGTATGCTCAG 57.718 33.333 0.00 0.00 35.12 3.35
2012 2218 4.051237 CCATGCAGCAAGAATTCATGATG 58.949 43.478 21.22 21.22 37.34 3.07
2355 2651 1.738099 CACCCTTCAGTTCGCCGAG 60.738 63.158 0.00 0.00 0.00 4.63
2380 2676 1.367840 GCTCGGGATGCCGAACTAT 59.632 57.895 28.90 0.00 41.77 2.12
2608 3011 3.525537 CTGGTGATGCTTGGTAGTAGTG 58.474 50.000 0.00 0.00 0.00 2.74
2657 3061 1.004745 GTCAGGGGAAAAGGATGCAGA 59.995 52.381 0.00 0.00 0.00 4.26
2658 3062 1.925255 TCAGGGGAAAAGGATGCAGAT 59.075 47.619 0.00 0.00 0.00 2.90
2659 3063 2.312741 TCAGGGGAAAAGGATGCAGATT 59.687 45.455 0.00 0.00 0.00 2.40
2847 3356 2.481185 TGCGAGTGTAATTTTTCCGGAC 59.519 45.455 1.83 0.00 0.00 4.79
2896 3405 1.404583 CCAGCATTTACTTGCCTTGCC 60.405 52.381 0.00 0.00 43.83 4.52
2948 3457 8.107095 ACAGCTCTAATTATTTCCAACCTTGTA 58.893 33.333 0.00 0.00 0.00 2.41
3024 3534 4.805744 TCCTTCTCTTGTATACTCCCTCC 58.194 47.826 4.17 0.00 0.00 4.30
3049 3559 8.771766 CCGTTCCTTAATATAAGACCTTTTAGC 58.228 37.037 0.00 0.00 0.00 3.09
3071 3581 7.073342 AGCTTTTTCTTATTCGTATGTGTCC 57.927 36.000 0.00 0.00 0.00 4.02
3075 3585 8.786826 TTTTTCTTATTCGTATGTGTCCAGAT 57.213 30.769 0.00 0.00 0.00 2.90
3376 4043 1.251251 GCAAGGGTCAGTGCAGAAAT 58.749 50.000 0.00 0.00 40.58 2.17
3542 4249 1.372499 CCGTGTCACCTGTACACCG 60.372 63.158 0.00 0.00 43.46 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 133 5.123186 TGATTCCATGACAAATGACGGTAAC 59.877 40.000 0.00 0.00 0.00 2.50
140 153 0.180406 GGTCTGGCCGGTACATGATT 59.820 55.000 12.43 0.00 0.00 2.57
142 155 2.363975 GGGTCTGGCCGGTACATGA 61.364 63.158 12.43 0.24 38.44 3.07
143 156 1.046472 TAGGGTCTGGCCGGTACATG 61.046 60.000 12.43 0.00 38.44 3.21
144 157 0.105142 ATAGGGTCTGGCCGGTACAT 60.105 55.000 12.43 6.06 38.44 2.29
145 158 0.557238 TATAGGGTCTGGCCGGTACA 59.443 55.000 12.43 1.42 38.44 2.90
146 159 1.934410 ATATAGGGTCTGGCCGGTAC 58.066 55.000 12.43 8.49 38.44 3.34
148 161 1.714787 TCTATATAGGGTCTGGCCGGT 59.285 52.381 12.43 0.00 38.44 5.28
167 302 4.323553 ACAACGATACAAGGATAGCCTC 57.676 45.455 0.00 0.00 46.28 4.70
184 319 5.631096 GGCTTTGAATTCTGAGCTTAACAAC 59.369 40.000 23.47 9.33 35.53 3.32
186 321 4.218417 GGGCTTTGAATTCTGAGCTTAACA 59.782 41.667 23.47 0.00 35.53 2.41
188 323 4.406456 TGGGCTTTGAATTCTGAGCTTAA 58.594 39.130 23.47 12.67 35.53 1.85
190 325 2.880443 TGGGCTTTGAATTCTGAGCTT 58.120 42.857 23.47 0.00 35.53 3.74
191 326 2.592102 TGGGCTTTGAATTCTGAGCT 57.408 45.000 23.47 0.00 35.53 4.09
192 327 3.006217 ACTTTGGGCTTTGAATTCTGAGC 59.994 43.478 19.15 19.15 0.00 4.26
193 328 4.861102 ACTTTGGGCTTTGAATTCTGAG 57.139 40.909 7.05 5.72 0.00 3.35
194 329 5.612725 AAACTTTGGGCTTTGAATTCTGA 57.387 34.783 7.05 0.00 0.00 3.27
195 330 7.381323 AGATAAACTTTGGGCTTTGAATTCTG 58.619 34.615 7.05 0.00 0.00 3.02
196 331 7.544804 AGATAAACTTTGGGCTTTGAATTCT 57.455 32.000 7.05 0.00 0.00 2.40
197 332 8.523658 AGTAGATAAACTTTGGGCTTTGAATTC 58.476 33.333 0.00 0.00 0.00 2.17
198 333 8.422577 AGTAGATAAACTTTGGGCTTTGAATT 57.577 30.769 0.00 0.00 0.00 2.17
199 334 8.422577 AAGTAGATAAACTTTGGGCTTTGAAT 57.577 30.769 0.00 0.00 36.26 2.57
200 335 7.833285 AAGTAGATAAACTTTGGGCTTTGAA 57.167 32.000 0.00 0.00 36.26 2.69
201 336 9.174166 GATAAGTAGATAAACTTTGGGCTTTGA 57.826 33.333 0.00 0.00 40.20 2.69
202 337 9.178758 AGATAAGTAGATAAACTTTGGGCTTTG 57.821 33.333 0.00 0.00 40.20 2.77
203 338 9.755122 AAGATAAGTAGATAAACTTTGGGCTTT 57.245 29.630 0.00 0.00 40.20 3.51
225 360 9.768662 AATTAAAGAACTGAAATGCAACAAGAT 57.231 25.926 0.00 0.00 0.00 2.40
226 361 9.598517 AAATTAAAGAACTGAAATGCAACAAGA 57.401 25.926 0.00 0.00 0.00 3.02
227 362 9.853921 GAAATTAAAGAACTGAAATGCAACAAG 57.146 29.630 0.00 0.00 0.00 3.16
228 363 8.825745 GGAAATTAAAGAACTGAAATGCAACAA 58.174 29.630 0.00 0.00 0.00 2.83
229 364 7.984050 TGGAAATTAAAGAACTGAAATGCAACA 59.016 29.630 0.00 0.00 0.00 3.33
230 365 8.364129 TGGAAATTAAAGAACTGAAATGCAAC 57.636 30.769 0.00 0.00 0.00 4.17
231 366 8.203485 ACTGGAAATTAAAGAACTGAAATGCAA 58.797 29.630 0.00 0.00 0.00 4.08
232 367 7.725251 ACTGGAAATTAAAGAACTGAAATGCA 58.275 30.769 0.00 0.00 0.00 3.96
233 368 9.691362 TTACTGGAAATTAAAGAACTGAAATGC 57.309 29.630 0.00 0.00 0.00 3.56
249 384 9.927081 AGATGAACAGGATAAATTACTGGAAAT 57.073 29.630 0.00 0.00 36.57 2.17
250 385 9.396022 GAGATGAACAGGATAAATTACTGGAAA 57.604 33.333 0.00 0.00 36.57 3.13
251 386 7.993183 GGAGATGAACAGGATAAATTACTGGAA 59.007 37.037 0.00 0.00 36.57 3.53
252 387 7.348274 AGGAGATGAACAGGATAAATTACTGGA 59.652 37.037 0.00 0.00 36.57 3.86
253 388 7.512992 AGGAGATGAACAGGATAAATTACTGG 58.487 38.462 0.00 0.00 36.57 4.00
254 389 8.428063 AGAGGAGATGAACAGGATAAATTACTG 58.572 37.037 0.00 0.00 38.19 2.74
255 390 8.560124 AGAGGAGATGAACAGGATAAATTACT 57.440 34.615 0.00 0.00 0.00 2.24
258 393 8.601546 GGATAGAGGAGATGAACAGGATAAATT 58.398 37.037 0.00 0.00 0.00 1.82
259 394 7.960861 AGGATAGAGGAGATGAACAGGATAAAT 59.039 37.037 0.00 0.00 0.00 1.40
260 395 7.309091 AGGATAGAGGAGATGAACAGGATAAA 58.691 38.462 0.00 0.00 0.00 1.40
261 396 6.868826 AGGATAGAGGAGATGAACAGGATAA 58.131 40.000 0.00 0.00 0.00 1.75
262 397 6.476409 AGGATAGAGGAGATGAACAGGATA 57.524 41.667 0.00 0.00 0.00 2.59
263 398 5.332743 GAGGATAGAGGAGATGAACAGGAT 58.667 45.833 0.00 0.00 0.00 3.24
264 399 4.735369 GAGGATAGAGGAGATGAACAGGA 58.265 47.826 0.00 0.00 0.00 3.86
265 400 3.505680 CGAGGATAGAGGAGATGAACAGG 59.494 52.174 0.00 0.00 0.00 4.00
266 401 4.141287 ACGAGGATAGAGGAGATGAACAG 58.859 47.826 0.00 0.00 0.00 3.16
267 402 4.171878 ACGAGGATAGAGGAGATGAACA 57.828 45.455 0.00 0.00 0.00 3.18
268 403 6.487331 TCTTTACGAGGATAGAGGAGATGAAC 59.513 42.308 0.00 0.00 0.00 3.18
269 404 6.602278 TCTTTACGAGGATAGAGGAGATGAA 58.398 40.000 0.00 0.00 0.00 2.57
270 405 6.189036 TCTTTACGAGGATAGAGGAGATGA 57.811 41.667 0.00 0.00 0.00 2.92
271 406 6.657117 TGATCTTTACGAGGATAGAGGAGATG 59.343 42.308 0.00 0.00 0.00 2.90
272 407 6.785076 TGATCTTTACGAGGATAGAGGAGAT 58.215 40.000 0.00 0.00 0.00 2.75
273 408 6.043358 TCTGATCTTTACGAGGATAGAGGAGA 59.957 42.308 0.00 0.00 0.00 3.71
274 409 6.234920 TCTGATCTTTACGAGGATAGAGGAG 58.765 44.000 0.00 0.00 0.00 3.69
275 410 6.189036 TCTGATCTTTACGAGGATAGAGGA 57.811 41.667 0.00 0.00 0.00 3.71
276 411 7.461182 AATCTGATCTTTACGAGGATAGAGG 57.539 40.000 0.00 0.00 0.00 3.69
277 412 9.757227 AAAAATCTGATCTTTACGAGGATAGAG 57.243 33.333 0.00 0.00 0.00 2.43
278 413 9.534565 CAAAAATCTGATCTTTACGAGGATAGA 57.465 33.333 0.00 0.00 0.00 1.98
279 414 9.319143 ACAAAAATCTGATCTTTACGAGGATAG 57.681 33.333 0.00 0.00 0.00 2.08
280 415 9.314321 GACAAAAATCTGATCTTTACGAGGATA 57.686 33.333 0.00 0.00 0.00 2.59
281 416 7.281100 GGACAAAAATCTGATCTTTACGAGGAT 59.719 37.037 0.00 0.00 0.00 3.24
282 417 6.594159 GGACAAAAATCTGATCTTTACGAGGA 59.406 38.462 0.00 0.00 0.00 3.71
283 418 6.595716 AGGACAAAAATCTGATCTTTACGAGG 59.404 38.462 0.00 0.00 0.00 4.63
284 419 7.547370 AGAGGACAAAAATCTGATCTTTACGAG 59.453 37.037 0.00 0.00 0.00 4.18
285 420 7.386851 AGAGGACAAAAATCTGATCTTTACGA 58.613 34.615 0.00 0.00 0.00 3.43
286 421 7.201565 GGAGAGGACAAAAATCTGATCTTTACG 60.202 40.741 0.00 0.00 0.00 3.18
287 422 7.826744 AGGAGAGGACAAAAATCTGATCTTTAC 59.173 37.037 0.00 0.00 0.00 2.01
288 423 7.922382 AGGAGAGGACAAAAATCTGATCTTTA 58.078 34.615 0.00 0.00 0.00 1.85
289 424 6.788218 AGGAGAGGACAAAAATCTGATCTTT 58.212 36.000 0.00 0.00 0.00 2.52
290 425 6.385766 AGGAGAGGACAAAAATCTGATCTT 57.614 37.500 0.00 0.00 0.00 2.40
291 426 5.395103 CGAGGAGAGGACAAAAATCTGATCT 60.395 44.000 0.00 0.00 0.00 2.75
292 427 4.808364 CGAGGAGAGGACAAAAATCTGATC 59.192 45.833 0.00 0.00 0.00 2.92
293 428 4.223923 ACGAGGAGAGGACAAAAATCTGAT 59.776 41.667 0.00 0.00 0.00 2.90
294 429 3.578716 ACGAGGAGAGGACAAAAATCTGA 59.421 43.478 0.00 0.00 0.00 3.27
295 430 3.929610 GACGAGGAGAGGACAAAAATCTG 59.070 47.826 0.00 0.00 0.00 2.90
296 431 3.367498 CGACGAGGAGAGGACAAAAATCT 60.367 47.826 0.00 0.00 0.00 2.40
297 432 2.924290 CGACGAGGAGAGGACAAAAATC 59.076 50.000 0.00 0.00 0.00 2.17
298 433 2.561419 TCGACGAGGAGAGGACAAAAAT 59.439 45.455 0.00 0.00 0.00 1.82
299 434 1.958579 TCGACGAGGAGAGGACAAAAA 59.041 47.619 0.00 0.00 0.00 1.94
300 435 1.268899 GTCGACGAGGAGAGGACAAAA 59.731 52.381 0.00 0.00 0.00 2.44
301 436 0.879765 GTCGACGAGGAGAGGACAAA 59.120 55.000 0.00 0.00 0.00 2.83
302 437 1.296755 CGTCGACGAGGAGAGGACAA 61.297 60.000 33.35 0.00 43.02 3.18
303 438 1.740664 CGTCGACGAGGAGAGGACA 60.741 63.158 33.35 0.00 43.02 4.02
304 439 3.091529 CGTCGACGAGGAGAGGAC 58.908 66.667 33.35 0.00 43.02 3.85
305 440 2.818714 GCGTCGACGAGGAGAGGA 60.819 66.667 39.74 0.00 43.02 3.71
306 441 4.225340 CGCGTCGACGAGGAGAGG 62.225 72.222 39.74 15.23 43.02 3.69
331 466 2.024871 GGATCTGGAGCGTCGTCG 59.975 66.667 0.00 0.00 40.37 5.12
332 467 2.024871 CGGATCTGGAGCGTCGTC 59.975 66.667 0.00 0.00 0.00 4.20
333 468 3.518998 CCGGATCTGGAGCGTCGT 61.519 66.667 16.28 0.00 0.00 4.34
334 469 3.209812 TCCGGATCTGGAGCGTCG 61.210 66.667 19.95 0.00 33.05 5.12
340 475 2.948386 CGATAGCTCCGGATCTGGA 58.052 57.895 22.28 22.28 36.37 3.86
365 500 0.970937 CTAGAGCGGTCCAAGGTGGA 60.971 60.000 11.73 0.00 45.98 4.02
366 501 1.517832 CTAGAGCGGTCCAAGGTGG 59.482 63.158 11.73 0.00 39.43 4.61
367 502 1.153549 GCTAGAGCGGTCCAAGGTG 60.154 63.158 11.73 0.00 0.00 4.00
368 503 3.300013 GCTAGAGCGGTCCAAGGT 58.700 61.111 11.73 0.00 0.00 3.50
386 521 3.599704 GATGGCCCTCCGCATTGC 61.600 66.667 0.00 0.00 40.31 3.56
387 522 1.895707 GAGATGGCCCTCCGCATTG 60.896 63.158 0.00 0.00 40.31 2.82
388 523 2.512896 GAGATGGCCCTCCGCATT 59.487 61.111 0.00 0.00 40.31 3.56
389 524 3.564218 GGAGATGGCCCTCCGCAT 61.564 66.667 11.81 0.00 42.80 4.73
395 530 1.656092 TACGAGGAGGAGATGGCCCT 61.656 60.000 0.00 0.00 36.57 5.19
396 531 1.152525 TACGAGGAGGAGATGGCCC 60.153 63.158 0.00 0.00 0.00 5.80
397 532 0.468400 ACTACGAGGAGGAGATGGCC 60.468 60.000 0.00 0.00 33.99 5.36
398 533 0.955905 GACTACGAGGAGGAGATGGC 59.044 60.000 0.00 0.00 33.99 4.40
399 534 1.202663 TCGACTACGAGGAGGAGATGG 60.203 57.143 0.00 0.00 43.81 3.51
400 535 2.242047 TCGACTACGAGGAGGAGATG 57.758 55.000 0.00 0.00 43.81 2.90
412 547 2.716864 GGCTCGGAGCTCGACTAC 59.283 66.667 27.47 7.14 43.74 2.73
413 548 2.895865 CGGCTCGGAGCTCGACTA 60.896 66.667 27.47 0.00 43.74 2.59
424 559 1.519455 GATGACCAACTCCGGCTCG 60.519 63.158 0.00 0.00 0.00 5.03
425 560 0.179000 ATGATGACCAACTCCGGCTC 59.821 55.000 0.00 0.00 0.00 4.70
426 561 1.414181 CTATGATGACCAACTCCGGCT 59.586 52.381 0.00 0.00 0.00 5.52
427 562 1.139058 ACTATGATGACCAACTCCGGC 59.861 52.381 0.00 0.00 0.00 6.13
428 563 2.483714 CCACTATGATGACCAACTCCGG 60.484 54.545 0.00 0.00 0.00 5.14
429 564 2.430694 TCCACTATGATGACCAACTCCG 59.569 50.000 0.00 0.00 0.00 4.63
430 565 4.141620 ACATCCACTATGATGACCAACTCC 60.142 45.833 7.93 0.00 43.94 3.85
431 566 4.813161 CACATCCACTATGATGACCAACTC 59.187 45.833 7.93 0.00 43.94 3.01
432 567 4.471025 TCACATCCACTATGATGACCAACT 59.529 41.667 7.93 0.00 43.94 3.16
433 568 4.769688 TCACATCCACTATGATGACCAAC 58.230 43.478 7.93 0.00 43.94 3.77
434 569 5.614308 GATCACATCCACTATGATGACCAA 58.386 41.667 7.93 0.00 43.94 3.67
435 570 4.262164 CGATCACATCCACTATGATGACCA 60.262 45.833 7.93 0.00 43.94 4.02
436 571 4.240888 CGATCACATCCACTATGATGACC 58.759 47.826 7.93 0.00 43.94 4.02
437 572 4.021981 TCCGATCACATCCACTATGATGAC 60.022 45.833 7.93 0.00 43.94 3.06
438 573 4.151883 TCCGATCACATCCACTATGATGA 58.848 43.478 7.93 0.00 43.94 2.92
439 574 4.525912 TCCGATCACATCCACTATGATG 57.474 45.455 0.00 0.00 46.10 3.07
440 575 5.246883 TGATTCCGATCACATCCACTATGAT 59.753 40.000 0.00 0.00 37.37 2.45
441 576 4.588528 TGATTCCGATCACATCCACTATGA 59.411 41.667 0.00 0.00 37.37 2.15
442 577 4.886579 TGATTCCGATCACATCCACTATG 58.113 43.478 0.00 0.00 37.37 2.23
443 578 4.020751 CCTGATTCCGATCACATCCACTAT 60.021 45.833 0.00 0.00 37.37 2.12
444 579 3.321968 CCTGATTCCGATCACATCCACTA 59.678 47.826 0.00 0.00 37.37 2.74
445 580 2.103771 CCTGATTCCGATCACATCCACT 59.896 50.000 0.00 0.00 37.37 4.00
446 581 2.487934 CCTGATTCCGATCACATCCAC 58.512 52.381 0.00 0.00 37.37 4.02
447 582 1.417517 CCCTGATTCCGATCACATCCA 59.582 52.381 0.00 0.00 37.37 3.41
448 583 1.694150 TCCCTGATTCCGATCACATCC 59.306 52.381 0.00 0.00 37.37 3.51
449 584 2.289320 CCTCCCTGATTCCGATCACATC 60.289 54.545 0.00 0.00 37.37 3.06
450 585 1.696336 CCTCCCTGATTCCGATCACAT 59.304 52.381 0.00 0.00 37.37 3.21
451 586 1.123077 CCTCCCTGATTCCGATCACA 58.877 55.000 0.00 0.00 37.37 3.58
452 587 0.394565 CCCTCCCTGATTCCGATCAC 59.605 60.000 0.00 0.00 37.37 3.06
453 588 0.764369 CCCCTCCCTGATTCCGATCA 60.764 60.000 0.00 0.00 39.92 2.92
454 589 1.484444 CCCCCTCCCTGATTCCGATC 61.484 65.000 0.00 0.00 0.00 3.69
455 590 1.462238 CCCCCTCCCTGATTCCGAT 60.462 63.158 0.00 0.00 0.00 4.18
456 591 2.040884 CCCCCTCCCTGATTCCGA 60.041 66.667 0.00 0.00 0.00 4.55
457 592 2.040884 TCCCCCTCCCTGATTCCG 60.041 66.667 0.00 0.00 0.00 4.30
458 593 1.772156 CCTCCCCCTCCCTGATTCC 60.772 68.421 0.00 0.00 0.00 3.01
459 594 0.766288 CTCCTCCCCCTCCCTGATTC 60.766 65.000 0.00 0.00 0.00 2.52
460 595 1.319799 CTCCTCCCCCTCCCTGATT 59.680 63.158 0.00 0.00 0.00 2.57
461 596 1.949449 ACTCCTCCCCCTCCCTGAT 60.949 63.158 0.00 0.00 0.00 2.90
462 597 2.540910 ACTCCTCCCCCTCCCTGA 60.541 66.667 0.00 0.00 0.00 3.86
463 598 2.366167 CACTCCTCCCCCTCCCTG 60.366 72.222 0.00 0.00 0.00 4.45
464 599 3.700350 CCACTCCTCCCCCTCCCT 61.700 72.222 0.00 0.00 0.00 4.20
465 600 3.041297 ATCCACTCCTCCCCCTCCC 62.041 68.421 0.00 0.00 0.00 4.30
466 601 1.768077 CATCCACTCCTCCCCCTCC 60.768 68.421 0.00 0.00 0.00 4.30
467 602 0.104725 ATCATCCACTCCTCCCCCTC 60.105 60.000 0.00 0.00 0.00 4.30
468 603 0.401105 CATCATCCACTCCTCCCCCT 60.401 60.000 0.00 0.00 0.00 4.79
469 604 2.061790 GCATCATCCACTCCTCCCCC 62.062 65.000 0.00 0.00 0.00 5.40
470 605 1.453669 GCATCATCCACTCCTCCCC 59.546 63.158 0.00 0.00 0.00 4.81
471 606 1.070445 CGCATCATCCACTCCTCCC 59.930 63.158 0.00 0.00 0.00 4.30
472 607 0.033228 CTCGCATCATCCACTCCTCC 59.967 60.000 0.00 0.00 0.00 4.30
473 608 1.000385 CTCTCGCATCATCCACTCCTC 60.000 57.143 0.00 0.00 0.00 3.71
474 609 1.039068 CTCTCGCATCATCCACTCCT 58.961 55.000 0.00 0.00 0.00 3.69
475 610 1.000385 CTCTCTCGCATCATCCACTCC 60.000 57.143 0.00 0.00 0.00 3.85
476 611 1.952990 TCTCTCTCGCATCATCCACTC 59.047 52.381 0.00 0.00 0.00 3.51
477 612 1.955778 CTCTCTCTCGCATCATCCACT 59.044 52.381 0.00 0.00 0.00 4.00
478 613 1.680735 ACTCTCTCTCGCATCATCCAC 59.319 52.381 0.00 0.00 0.00 4.02
479 614 1.680207 CACTCTCTCTCGCATCATCCA 59.320 52.381 0.00 0.00 0.00 3.41
480 615 1.952990 TCACTCTCTCTCGCATCATCC 59.047 52.381 0.00 0.00 0.00 3.51
481 616 2.605338 GCTCACTCTCTCTCGCATCATC 60.605 54.545 0.00 0.00 0.00 2.92
482 617 1.337703 GCTCACTCTCTCTCGCATCAT 59.662 52.381 0.00 0.00 0.00 2.45
483 618 0.737804 GCTCACTCTCTCTCGCATCA 59.262 55.000 0.00 0.00 0.00 3.07
484 619 1.024271 AGCTCACTCTCTCTCGCATC 58.976 55.000 0.00 0.00 0.00 3.91
485 620 2.221169 CTAGCTCACTCTCTCTCGCAT 58.779 52.381 0.00 0.00 0.00 4.73
486 621 1.662517 CTAGCTCACTCTCTCTCGCA 58.337 55.000 0.00 0.00 0.00 5.10
487 622 0.944386 CCTAGCTCACTCTCTCTCGC 59.056 60.000 0.00 0.00 0.00 5.03
488 623 1.134220 ACCCTAGCTCACTCTCTCTCG 60.134 57.143 0.00 0.00 0.00 4.04
489 624 2.729028 ACCCTAGCTCACTCTCTCTC 57.271 55.000 0.00 0.00 0.00 3.20
490 625 3.096092 CAAACCCTAGCTCACTCTCTCT 58.904 50.000 0.00 0.00 0.00 3.10
491 626 2.167487 CCAAACCCTAGCTCACTCTCTC 59.833 54.545 0.00 0.00 0.00 3.20
492 627 2.183679 CCAAACCCTAGCTCACTCTCT 58.816 52.381 0.00 0.00 0.00 3.10
493 628 2.167487 CTCCAAACCCTAGCTCACTCTC 59.833 54.545 0.00 0.00 0.00 3.20
494 629 2.183679 CTCCAAACCCTAGCTCACTCT 58.816 52.381 0.00 0.00 0.00 3.24
495 630 1.406205 GCTCCAAACCCTAGCTCACTC 60.406 57.143 0.00 0.00 33.40 3.51
496 631 0.615850 GCTCCAAACCCTAGCTCACT 59.384 55.000 0.00 0.00 33.40 3.41
497 632 0.741221 CGCTCCAAACCCTAGCTCAC 60.741 60.000 0.00 0.00 34.03 3.51
498 633 0.902984 TCGCTCCAAACCCTAGCTCA 60.903 55.000 0.00 0.00 34.03 4.26
499 634 0.179097 CTCGCTCCAAACCCTAGCTC 60.179 60.000 0.00 0.00 34.03 4.09
500 635 1.617947 CCTCGCTCCAAACCCTAGCT 61.618 60.000 0.00 0.00 34.03 3.32
501 636 1.153349 CCTCGCTCCAAACCCTAGC 60.153 63.158 0.00 0.00 0.00 3.42
502 637 1.153349 GCCTCGCTCCAAACCCTAG 60.153 63.158 0.00 0.00 0.00 3.02
503 638 2.987125 GCCTCGCTCCAAACCCTA 59.013 61.111 0.00 0.00 0.00 3.53
504 639 4.394712 CGCCTCGCTCCAAACCCT 62.395 66.667 0.00 0.00 0.00 4.34
525 660 2.823154 TGTCCCACGAAAATCCCAATTC 59.177 45.455 0.00 0.00 0.00 2.17
526 661 2.825532 CTGTCCCACGAAAATCCCAATT 59.174 45.455 0.00 0.00 0.00 2.32
527 662 2.225017 ACTGTCCCACGAAAATCCCAAT 60.225 45.455 0.00 0.00 0.00 3.16
528 663 1.144093 ACTGTCCCACGAAAATCCCAA 59.856 47.619 0.00 0.00 0.00 4.12
529 664 0.768622 ACTGTCCCACGAAAATCCCA 59.231 50.000 0.00 0.00 0.00 4.37
530 665 1.539827 CAACTGTCCCACGAAAATCCC 59.460 52.381 0.00 0.00 0.00 3.85
531 666 1.068541 GCAACTGTCCCACGAAAATCC 60.069 52.381 0.00 0.00 0.00 3.01
532 667 1.399727 CGCAACTGTCCCACGAAAATC 60.400 52.381 0.00 0.00 0.00 2.17
533 668 0.591170 CGCAACTGTCCCACGAAAAT 59.409 50.000 0.00 0.00 0.00 1.82
534 669 1.440938 CCGCAACTGTCCCACGAAAA 61.441 55.000 0.00 0.00 0.00 2.29
535 670 1.890041 CCGCAACTGTCCCACGAAA 60.890 57.895 0.00 0.00 0.00 3.46
536 671 2.280524 CCGCAACTGTCCCACGAA 60.281 61.111 0.00 0.00 0.00 3.85
537 672 4.308458 CCCGCAACTGTCCCACGA 62.308 66.667 0.00 0.00 0.00 4.35
539 674 4.265056 ACCCCGCAACTGTCCCAC 62.265 66.667 0.00 0.00 0.00 4.61
540 675 3.948719 GACCCCGCAACTGTCCCA 61.949 66.667 0.00 0.00 0.00 4.37
543 678 4.309950 ACCGACCCCGCAACTGTC 62.310 66.667 0.00 0.00 0.00 3.51
544 679 4.619227 CACCGACCCCGCAACTGT 62.619 66.667 0.00 0.00 0.00 3.55
562 697 3.901797 CTTGACAGGCCCGACCCAC 62.902 68.421 0.00 0.00 40.58 4.61
563 698 3.636231 CTTGACAGGCCCGACCCA 61.636 66.667 0.00 0.00 40.58 4.51
588 723 4.615815 ATCCGGGCATGCTCGAGC 62.616 66.667 40.25 30.42 43.62 5.03
589 724 2.356793 GATCCGGGCATGCTCGAG 60.357 66.667 40.25 28.42 43.62 4.04
590 725 3.153781 TGATCCGGGCATGCTCGA 61.154 61.111 40.25 25.71 43.62 4.04
591 726 2.969238 GTGATCCGGGCATGCTCG 60.969 66.667 32.85 32.85 40.05 5.03
592 727 2.592861 GGTGATCCGGGCATGCTC 60.593 66.667 18.92 13.80 0.00 4.26
593 728 4.195334 GGGTGATCCGGGCATGCT 62.195 66.667 18.92 0.00 33.83 3.79
595 730 1.778017 TATGGGGTGATCCGGGCATG 61.778 60.000 0.00 0.00 36.01 4.06
596 731 0.846427 ATATGGGGTGATCCGGGCAT 60.846 55.000 0.00 0.00 36.01 4.40
597 732 1.463214 ATATGGGGTGATCCGGGCA 60.463 57.895 0.00 0.00 36.01 5.36
598 733 1.299976 GATATGGGGTGATCCGGGC 59.700 63.158 0.00 0.00 36.01 6.13
599 734 0.840288 TGGATATGGGGTGATCCGGG 60.840 60.000 0.00 0.00 44.04 5.73
600 735 1.210478 GATGGATATGGGGTGATCCGG 59.790 57.143 0.00 0.00 44.04 5.14
601 736 1.210478 GGATGGATATGGGGTGATCCG 59.790 57.143 0.00 0.00 44.04 4.18
602 737 2.240667 CAGGATGGATATGGGGTGATCC 59.759 54.545 0.00 0.00 41.85 3.36
603 738 2.915604 ACAGGATGGATATGGGGTGATC 59.084 50.000 0.00 0.00 43.62 2.92
604 739 3.009748 ACAGGATGGATATGGGGTGAT 57.990 47.619 0.00 0.00 43.62 3.06
605 740 2.512910 ACAGGATGGATATGGGGTGA 57.487 50.000 0.00 0.00 43.62 4.02
606 741 4.934797 AATACAGGATGGATATGGGGTG 57.065 45.455 0.00 0.00 40.24 4.61
607 742 4.044571 CCAAATACAGGATGGATATGGGGT 59.955 45.833 0.00 0.00 40.24 4.95
608 743 4.570505 CCCAAATACAGGATGGATATGGGG 60.571 50.000 0.00 0.00 40.24 4.96
609 744 4.044571 ACCCAAATACAGGATGGATATGGG 59.955 45.833 5.50 5.50 40.24 4.00
610 745 5.261040 ACCCAAATACAGGATGGATATGG 57.739 43.478 0.00 0.00 40.24 2.74
611 746 5.477984 CCAACCCAAATACAGGATGGATATG 59.522 44.000 0.00 0.00 40.24 1.78
612 747 5.375354 TCCAACCCAAATACAGGATGGATAT 59.625 40.000 4.10 0.00 40.24 1.63
613 748 4.729370 TCCAACCCAAATACAGGATGGATA 59.271 41.667 4.10 0.00 40.24 2.59
614 749 3.531397 TCCAACCCAAATACAGGATGGAT 59.469 43.478 4.10 0.00 46.08 3.41
615 750 2.922955 TCCAACCCAAATACAGGATGGA 59.077 45.455 4.10 4.10 43.62 3.41
616 751 3.380471 TCCAACCCAAATACAGGATGG 57.620 47.619 0.00 0.00 43.62 3.51
617 752 6.306199 TCATATCCAACCCAAATACAGGATG 58.694 40.000 0.00 0.00 46.00 3.51
618 753 6.467775 CCTCATATCCAACCCAAATACAGGAT 60.468 42.308 0.00 0.00 39.14 3.24
619 754 5.163099 CCTCATATCCAACCCAAATACAGGA 60.163 44.000 0.00 0.00 0.00 3.86
620 755 5.072741 CCTCATATCCAACCCAAATACAGG 58.927 45.833 0.00 0.00 0.00 4.00
621 756 5.072741 CCCTCATATCCAACCCAAATACAG 58.927 45.833 0.00 0.00 0.00 2.74
622 757 4.141041 CCCCTCATATCCAACCCAAATACA 60.141 45.833 0.00 0.00 0.00 2.29
623 758 4.141018 ACCCCTCATATCCAACCCAAATAC 60.141 45.833 0.00 0.00 0.00 1.89
624 759 4.058731 ACCCCTCATATCCAACCCAAATA 58.941 43.478 0.00 0.00 0.00 1.40
625 760 2.865165 ACCCCTCATATCCAACCCAAAT 59.135 45.455 0.00 0.00 0.00 2.32
626 761 2.293246 ACCCCTCATATCCAACCCAAA 58.707 47.619 0.00 0.00 0.00 3.28
627 762 1.994399 ACCCCTCATATCCAACCCAA 58.006 50.000 0.00 0.00 0.00 4.12
628 763 2.414612 GTACCCCTCATATCCAACCCA 58.585 52.381 0.00 0.00 0.00 4.51
629 764 1.703513 GGTACCCCTCATATCCAACCC 59.296 57.143 0.00 0.00 0.00 4.11
630 765 1.346722 CGGTACCCCTCATATCCAACC 59.653 57.143 6.25 0.00 0.00 3.77
631 766 1.346722 CCGGTACCCCTCATATCCAAC 59.653 57.143 6.25 0.00 0.00 3.77
632 767 1.061967 ACCGGTACCCCTCATATCCAA 60.062 52.381 4.49 0.00 0.00 3.53
633 768 0.564171 ACCGGTACCCCTCATATCCA 59.436 55.000 4.49 0.00 0.00 3.41
634 769 1.264295 GACCGGTACCCCTCATATCC 58.736 60.000 7.34 0.00 0.00 2.59
635 770 1.893801 CTGACCGGTACCCCTCATATC 59.106 57.143 7.34 0.00 0.00 1.63
636 771 2.011122 CTGACCGGTACCCCTCATAT 57.989 55.000 7.34 0.00 0.00 1.78
637 772 0.757935 GCTGACCGGTACCCCTCATA 60.758 60.000 7.34 0.00 0.00 2.15
638 773 2.064581 GCTGACCGGTACCCCTCAT 61.065 63.158 7.34 0.00 0.00 2.90
639 774 2.682494 GCTGACCGGTACCCCTCA 60.682 66.667 7.34 6.17 0.00 3.86
640 775 3.468140 GGCTGACCGGTACCCCTC 61.468 72.222 7.34 1.17 0.00 4.30
650 785 3.692370 ATAAACGGCCGGGCTGACC 62.692 63.158 33.58 8.96 38.46 4.02
651 786 2.124860 ATAAACGGCCGGGCTGAC 60.125 61.111 33.58 9.36 38.46 3.51
652 787 2.188469 GATAAACGGCCGGGCTGA 59.812 61.111 33.58 12.65 38.46 4.26
653 788 2.900337 GGATAAACGGCCGGGCTG 60.900 66.667 31.76 26.03 41.29 4.85
654 789 4.540735 CGGATAAACGGCCGGGCT 62.541 66.667 31.76 15.65 43.67 5.19
659 794 1.427819 CAACTGCGGATAAACGGCC 59.572 57.895 0.00 0.00 42.84 6.13
660 795 1.022451 TCCAACTGCGGATAAACGGC 61.022 55.000 0.00 0.00 43.60 5.68
661 796 1.006832 CTCCAACTGCGGATAAACGG 58.993 55.000 0.00 0.00 33.56 4.44
662 797 1.927174 CTCTCCAACTGCGGATAAACG 59.073 52.381 0.00 0.00 33.56 3.60
663 798 2.973945 ACTCTCCAACTGCGGATAAAC 58.026 47.619 0.00 0.00 33.56 2.01
664 799 3.695830 AACTCTCCAACTGCGGATAAA 57.304 42.857 0.00 0.00 33.56 1.40
665 800 3.596214 GAAACTCTCCAACTGCGGATAA 58.404 45.455 0.00 0.00 33.56 1.75
666 801 2.416836 CGAAACTCTCCAACTGCGGATA 60.417 50.000 0.00 0.00 33.56 2.59
667 802 1.673033 CGAAACTCTCCAACTGCGGAT 60.673 52.381 0.00 0.00 33.56 4.18
668 803 0.319555 CGAAACTCTCCAACTGCGGA 60.320 55.000 0.00 0.00 0.00 5.54
669 804 1.291877 CCGAAACTCTCCAACTGCGG 61.292 60.000 0.00 0.00 0.00 5.69
670 805 0.600255 ACCGAAACTCTCCAACTGCG 60.600 55.000 0.00 0.00 0.00 5.18
671 806 1.264288 CAACCGAAACTCTCCAACTGC 59.736 52.381 0.00 0.00 0.00 4.40
672 807 1.873591 CCAACCGAAACTCTCCAACTG 59.126 52.381 0.00 0.00 0.00 3.16
673 808 1.766496 TCCAACCGAAACTCTCCAACT 59.234 47.619 0.00 0.00 0.00 3.16
674 809 2.249844 TCCAACCGAAACTCTCCAAC 57.750 50.000 0.00 0.00 0.00 3.77
675 810 2.611971 CGATCCAACCGAAACTCTCCAA 60.612 50.000 0.00 0.00 0.00 3.53
676 811 1.067142 CGATCCAACCGAAACTCTCCA 60.067 52.381 0.00 0.00 0.00 3.86
677 812 1.203994 TCGATCCAACCGAAACTCTCC 59.796 52.381 0.00 0.00 32.64 3.71
678 813 2.649331 TCGATCCAACCGAAACTCTC 57.351 50.000 0.00 0.00 32.64 3.20
679 814 3.611766 AATCGATCCAACCGAAACTCT 57.388 42.857 0.00 0.00 39.62 3.24
680 815 4.680171 AAAATCGATCCAACCGAAACTC 57.320 40.909 0.00 0.00 39.62 3.01
721 856 2.409870 GCTCGGGCAAACCATCTGG 61.410 63.158 0.00 0.00 40.22 3.86
722 857 2.753966 CGCTCGGGCAAACCATCTG 61.754 63.158 8.62 0.00 40.22 2.90
723 858 2.436646 CGCTCGGGCAAACCATCT 60.437 61.111 8.62 0.00 40.22 2.90
724 859 2.746277 ACGCTCGGGCAAACCATC 60.746 61.111 8.62 0.00 40.22 3.51
725 860 2.746277 GACGCTCGGGCAAACCAT 60.746 61.111 8.62 0.00 40.22 3.55
726 861 3.936203 AGACGCTCGGGCAAACCA 61.936 61.111 8.62 0.00 40.22 3.67
727 862 3.423154 CAGACGCTCGGGCAAACC 61.423 66.667 8.62 0.00 38.60 3.27
728 863 2.357034 TCAGACGCTCGGGCAAAC 60.357 61.111 8.62 0.00 38.60 2.93
729 864 2.048222 CTCAGACGCTCGGGCAAA 60.048 61.111 8.62 0.00 38.60 3.68
730 865 2.989253 TCTCAGACGCTCGGGCAA 60.989 61.111 8.62 0.00 38.60 4.52
731 866 3.749064 GTCTCAGACGCTCGGGCA 61.749 66.667 8.62 0.00 38.60 5.36
740 875 2.358267 ACCAATCGTATCCGTCTCAGAC 59.642 50.000 0.00 0.00 35.01 3.51
741 876 2.617308 GACCAATCGTATCCGTCTCAGA 59.383 50.000 0.00 0.00 35.01 3.27
742 877 2.287668 GGACCAATCGTATCCGTCTCAG 60.288 54.545 0.00 0.00 35.01 3.35
743 878 1.679680 GGACCAATCGTATCCGTCTCA 59.320 52.381 0.00 0.00 35.01 3.27
744 879 2.418983 GGACCAATCGTATCCGTCTC 57.581 55.000 0.00 0.00 35.01 3.36
749 884 0.106149 AAGCCGGACCAATCGTATCC 59.894 55.000 5.05 0.00 0.00 2.59
750 885 1.949465 AAAGCCGGACCAATCGTATC 58.051 50.000 5.05 0.00 0.00 2.24
751 886 2.696707 TCTAAAGCCGGACCAATCGTAT 59.303 45.455 5.05 0.00 0.00 3.06
752 887 2.101783 TCTAAAGCCGGACCAATCGTA 58.898 47.619 5.05 0.00 0.00 3.43
753 888 0.899720 TCTAAAGCCGGACCAATCGT 59.100 50.000 5.05 0.00 0.00 3.73
754 889 1.867233 CATCTAAAGCCGGACCAATCG 59.133 52.381 5.05 0.00 0.00 3.34
755 890 1.604278 GCATCTAAAGCCGGACCAATC 59.396 52.381 5.05 0.00 0.00 2.67
756 891 1.212935 AGCATCTAAAGCCGGACCAAT 59.787 47.619 5.05 0.00 0.00 3.16
757 892 0.618458 AGCATCTAAAGCCGGACCAA 59.382 50.000 5.05 0.00 0.00 3.67
758 893 0.178068 GAGCATCTAAAGCCGGACCA 59.822 55.000 5.05 0.00 0.00 4.02
759 894 2.993539 GAGCATCTAAAGCCGGACC 58.006 57.895 5.05 0.00 0.00 4.46
771 906 4.449068 TCGTTTTGTTTCTCTCAGAGCATC 59.551 41.667 0.00 0.00 0.00 3.91
772 907 4.380531 TCGTTTTGTTTCTCTCAGAGCAT 58.619 39.130 0.00 0.00 0.00 3.79
773 908 3.792401 TCGTTTTGTTTCTCTCAGAGCA 58.208 40.909 0.00 0.00 0.00 4.26
774 909 3.363477 GCTCGTTTTGTTTCTCTCAGAGC 60.363 47.826 0.00 0.00 41.08 4.09
775 910 3.185391 GGCTCGTTTTGTTTCTCTCAGAG 59.815 47.826 0.00 0.00 0.00 3.35
776 911 3.131396 GGCTCGTTTTGTTTCTCTCAGA 58.869 45.455 0.00 0.00 0.00 3.27
777 912 2.872245 TGGCTCGTTTTGTTTCTCTCAG 59.128 45.455 0.00 0.00 0.00 3.35
787 922 1.879380 TGTTCTCCATGGCTCGTTTTG 59.121 47.619 6.96 0.00 0.00 2.44
789 924 1.347707 TCTGTTCTCCATGGCTCGTTT 59.652 47.619 6.96 0.00 0.00 3.60
792 927 0.803768 CGTCTGTTCTCCATGGCTCG 60.804 60.000 6.96 0.00 0.00 5.03
797 932 0.171231 TCTCGCGTCTGTTCTCCATG 59.829 55.000 5.77 0.00 0.00 3.66
798 933 0.453793 CTCTCGCGTCTGTTCTCCAT 59.546 55.000 5.77 0.00 0.00 3.41
801 936 0.736053 ATCCTCTCGCGTCTGTTCTC 59.264 55.000 5.77 0.00 0.00 2.87
802 937 2.039818 TATCCTCTCGCGTCTGTTCT 57.960 50.000 5.77 0.00 0.00 3.01
821 956 8.713708 ATATAGTACACATCTCAGCTAACCTT 57.286 34.615 0.00 0.00 0.00 3.50
876 1011 2.936498 GGGACATTGGTTGTGATCGTAG 59.064 50.000 0.00 0.00 39.18 3.51
879 1014 1.094785 GGGGACATTGGTTGTGATCG 58.905 55.000 0.00 0.00 39.18 3.69
893 1028 1.359459 GAGAAACGTGCGATGGGGAC 61.359 60.000 0.00 0.00 0.00 4.46
894 1029 1.079405 GAGAAACGTGCGATGGGGA 60.079 57.895 0.00 0.00 0.00 4.81
959 1101 6.275494 GGAGACCTTTATATAGAGTCTGGC 57.725 45.833 14.45 5.95 37.90 4.85
978 1120 4.047166 ACCAATGATACAAGGATGGGAGA 58.953 43.478 0.00 0.00 32.21 3.71
979 1121 4.443978 ACCAATGATACAAGGATGGGAG 57.556 45.455 0.00 0.00 32.21 4.30
980 1122 5.690097 GCTTACCAATGATACAAGGATGGGA 60.690 44.000 0.00 0.00 32.21 4.37
983 1125 7.933577 TCTTAGCTTACCAATGATACAAGGATG 59.066 37.037 0.00 0.00 0.00 3.51
993 1135 7.362920 GGCTTTGATTTCTTAGCTTACCAATGA 60.363 37.037 0.00 0.00 34.16 2.57
999 1141 7.371159 ACTTTGGCTTTGATTTCTTAGCTTAC 58.629 34.615 0.00 0.00 34.16 2.34
1087 1233 5.598830 AGACGACCAGGATGAATTGTAGTAT 59.401 40.000 0.00 0.00 39.69 2.12
1091 1237 3.132289 GGAGACGACCAGGATGAATTGTA 59.868 47.826 0.00 0.00 39.69 2.41
1093 1239 2.169352 AGGAGACGACCAGGATGAATTG 59.831 50.000 0.00 0.00 39.69 2.32
1098 1244 2.350057 TAGAGGAGACGACCAGGATG 57.650 55.000 0.00 0.00 0.00 3.51
1105 1251 2.137523 GACGAGGATAGAGGAGACGAC 58.862 57.143 0.00 0.00 0.00 4.34
1108 1254 3.811083 TCTTGACGAGGATAGAGGAGAC 58.189 50.000 0.00 0.00 0.00 3.36
1670 1824 4.416601 CCCTCCTCCTCCCCCGTT 62.417 72.222 0.00 0.00 0.00 4.44
1770 1924 7.588497 ACTAGTCTTGTGCATGACATAGATA 57.412 36.000 16.82 3.72 37.79 1.98
1877 2069 7.390162 GGTTGAATTATTCTTCCAATTTGCCAA 59.610 33.333 6.50 0.00 0.00 4.52
1881 2073 8.885722 CCATGGTTGAATTATTCTTCCAATTTG 58.114 33.333 18.78 14.42 36.97 2.32
1944 2136 4.156922 ACTGTCTCGTCAATTCCTACTGAG 59.843 45.833 0.00 0.00 0.00 3.35
1948 2140 4.436242 TGACTGTCTCGTCAATTCCTAC 57.564 45.455 9.51 0.00 40.69 3.18
2012 2218 3.063180 CAGCTTCAGCAACTAGTGTATGC 59.937 47.826 9.57 9.57 45.16 3.14
2163 2421 5.344743 TGAGCCTGATAAAGTACTTCTGG 57.655 43.478 8.95 11.09 0.00 3.86
2257 2524 3.499737 CAATCACTGGGACGGCGC 61.500 66.667 6.90 0.00 39.14 6.53
2336 2632 2.030562 CGGCGAACTGAAGGGTGT 59.969 61.111 0.00 0.00 0.00 4.16
2338 2634 2.657237 CTCGGCGAACTGAAGGGT 59.343 61.111 12.13 0.00 0.00 4.34
2657 3061 7.067737 TCACTTGACAATGTGCATGATCATAAT 59.932 33.333 8.15 0.00 34.49 1.28
2658 3062 6.374894 TCACTTGACAATGTGCATGATCATAA 59.625 34.615 8.15 0.00 34.49 1.90
2659 3063 5.881443 TCACTTGACAATGTGCATGATCATA 59.119 36.000 8.15 0.00 34.49 2.15
2790 3276 1.045407 AAGCACCGAGACAGGTTGTA 58.955 50.000 0.00 0.00 43.00 2.41
2791 3277 0.532862 CAAGCACCGAGACAGGTTGT 60.533 55.000 0.00 0.00 43.00 3.32
2792 3278 1.845809 GCAAGCACCGAGACAGGTTG 61.846 60.000 0.00 0.00 43.00 3.77
2793 3279 1.598130 GCAAGCACCGAGACAGGTT 60.598 57.895 0.00 0.00 43.00 3.50
2871 3380 3.285484 AGGCAAGTAAATGCTGGATGAG 58.715 45.455 0.00 0.00 45.68 2.90
2896 3405 4.584325 TCAAGGAAAAAGTTGACCAGATGG 59.416 41.667 0.00 0.00 42.17 3.51
2948 3457 3.322828 ACAAGCAATGCAAAGGTCAATCT 59.677 39.130 8.35 0.00 0.00 2.40
2998 3508 7.147461 GGAGGGAGTATACAAGAGAAGGATTTT 60.147 40.741 5.50 0.00 0.00 1.82
3024 3534 9.543783 AGCTAAAAGGTCTTATATTAAGGAACG 57.456 33.333 0.00 0.00 0.00 3.95
3049 3559 8.251750 TCTGGACACATACGAATAAGAAAAAG 57.748 34.615 0.00 0.00 0.00 2.27
3376 4043 3.388024 AGAGCTGAGTGAGTGGTTTTGTA 59.612 43.478 0.00 0.00 0.00 2.41
3526 4233 1.068127 AGAACGGTGTACAGGTGACAC 59.932 52.381 0.00 0.00 45.31 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.