Multiple sequence alignment - TraesCS3D01G055800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G055800 chr3D 100.000 2908 0 0 1 2908 23090777 23093684 0.000000e+00 5371.0
1 TraesCS3D01G055800 chr3D 90.943 265 21 3 1838 2100 599056474 599056211 1.280000e-93 353.0
2 TraesCS3D01G055800 chr3D 90.674 193 16 2 1684 1875 599056675 599056484 3.720000e-64 255.0
3 TraesCS3D01G055800 chr2D 93.309 807 46 6 2105 2908 644221901 644222702 0.000000e+00 1184.0
4 TraesCS3D01G055800 chr2D 90.566 636 49 7 950 1582 18170010 18169383 0.000000e+00 832.0
5 TraesCS3D01G055800 chr2D 87.783 663 70 9 2104 2758 70418224 70417565 0.000000e+00 765.0
6 TraesCS3D01G055800 chr2D 87.879 660 69 9 2107 2758 629646361 629645705 0.000000e+00 765.0
7 TraesCS3D01G055800 chr2D 82.353 408 59 9 1697 2100 188514272 188513874 2.770000e-90 342.0
8 TraesCS3D01G055800 chr6D 93.176 806 43 5 2104 2908 36737380 36736586 0.000000e+00 1173.0
9 TraesCS3D01G055800 chr6D 93.151 73 5 0 1577 1649 456541304 456541376 1.100000e-19 108.0
10 TraesCS3D01G055800 chr7D 93.159 804 41 4 2106 2908 25763022 25762232 0.000000e+00 1168.0
11 TraesCS3D01G055800 chr7D 90.729 809 53 9 2104 2908 599237928 599237138 0.000000e+00 1059.0
12 TraesCS3D01G055800 chr7D 88.042 669 61 9 2106 2758 523520559 523519894 0.000000e+00 774.0
13 TraesCS3D01G055800 chr4D 91.551 864 27 12 113 946 503412056 503412903 0.000000e+00 1149.0
14 TraesCS3D01G055800 chr4D 94.133 750 41 2 2104 2852 501114149 501114896 0.000000e+00 1138.0
15 TraesCS3D01G055800 chr4D 94.444 738 37 4 2104 2839 494077333 494078068 0.000000e+00 1133.0
16 TraesCS3D01G055800 chr4D 90.000 810 59 12 2104 2908 498752509 498751717 0.000000e+00 1027.0
17 TraesCS3D01G055800 chr4D 94.709 567 29 1 1016 1582 323097952 323097387 0.000000e+00 880.0
18 TraesCS3D01G055800 chr4D 87.820 665 67 12 2104 2758 502011108 502010448 0.000000e+00 767.0
19 TraesCS3D01G055800 chr4D 94.737 76 4 0 1577 1652 323097179 323097104 5.090000e-23 119.0
20 TraesCS3D01G055800 chr2B 92.432 806 58 3 2104 2908 132628661 132627858 0.000000e+00 1147.0
21 TraesCS3D01G055800 chr2B 84.873 628 48 20 359 945 170857511 170858132 8.980000e-165 590.0
22 TraesCS3D01G055800 chr2B 95.703 256 10 1 106 361 170855857 170856111 7.500000e-111 411.0
23 TraesCS3D01G055800 chr2B 83.566 286 37 7 1821 2100 244776020 244775739 2.870000e-65 259.0
24 TraesCS3D01G055800 chr2B 96.053 76 3 0 1577 1652 29119796 29119871 1.090000e-24 124.0
25 TraesCS3D01G055800 chr5B 90.173 865 45 18 112 946 339286047 339285193 0.000000e+00 1090.0
26 TraesCS3D01G055800 chr1D 90.482 809 57 12 2105 2908 458323540 458322747 0.000000e+00 1050.0
27 TraesCS3D01G055800 chr1D 87.500 664 71 10 2104 2758 81645901 81646561 0.000000e+00 756.0
28 TraesCS3D01G055800 chr3B 96.707 577 18 1 1003 1579 40773318 40773893 0.000000e+00 959.0
29 TraesCS3D01G055800 chr3B 88.427 337 37 2 112 447 754207127 754206792 3.490000e-109 405.0
30 TraesCS3D01G055800 chr3B 91.509 106 8 1 7 111 40534803 40534908 8.400000e-31 145.0
31 TraesCS3D01G055800 chr3B 89.189 111 12 0 1 111 40773179 40773289 3.910000e-29 139.0
32 TraesCS3D01G055800 chr3B 88.393 112 9 1 1 108 40546031 40546142 6.540000e-27 132.0
33 TraesCS3D01G055800 chr3B 94.444 72 4 0 1578 1649 40774105 40774176 8.520000e-21 111.0
34 TraesCS3D01G055800 chr3B 77.778 144 25 6 126 266 256727485 256727346 6.680000e-12 82.4
35 TraesCS3D01G055800 chr3B 84.270 89 7 6 1 89 40778619 40778700 2.400000e-11 80.5
36 TraesCS3D01G055800 chr4A 90.867 646 44 9 947 1579 149046698 149047341 0.000000e+00 852.0
37 TraesCS3D01G055800 chr4A 95.890 73 3 0 1577 1649 149047552 149047624 5.090000e-23 119.0
38 TraesCS3D01G055800 chr5A 90.938 640 47 5 950 1582 705403351 705402716 0.000000e+00 850.0
39 TraesCS3D01G055800 chr5A 96.053 76 3 0 1577 1652 705348764 705348689 1.090000e-24 124.0
40 TraesCS3D01G055800 chr5A 93.243 74 5 0 1579 1652 705402506 705402433 3.060000e-20 110.0
41 TraesCS3D01G055800 chr4B 93.651 567 35 1 1016 1582 403254332 403253767 0.000000e+00 846.0
42 TraesCS3D01G055800 chr4B 94.667 75 4 0 1578 1652 403253558 403253484 1.830000e-22 117.0
43 TraesCS3D01G055800 chr6B 90.343 642 52 6 947 1579 694258905 694259545 0.000000e+00 833.0
44 TraesCS3D01G055800 chr6B 91.781 73 6 0 1577 1649 694259756 694259828 5.130000e-18 102.0
45 TraesCS3D01G055800 chr2A 90.566 636 49 5 950 1582 19164217 19163590 0.000000e+00 832.0
46 TraesCS3D01G055800 chr2A 89.888 267 19 5 441 700 47401489 47401224 1.290000e-88 337.0
47 TraesCS3D01G055800 chr2A 81.443 291 45 8 1816 2100 202076895 202076608 2.250000e-56 230.0
48 TraesCS3D01G055800 chr6A 92.908 564 39 1 1016 1579 603249194 603249756 0.000000e+00 819.0
49 TraesCS3D01G055800 chr6A 84.074 540 40 25 441 948 16089399 16088874 2.030000e-131 479.0
50 TraesCS3D01G055800 chr6A 88.131 337 39 1 111 447 16098182 16097847 1.620000e-107 399.0
51 TraesCS3D01G055800 chr6A 86.486 74 7 3 761 833 565569242 565569313 8.640000e-11 78.7
52 TraesCS3D01G055800 chr6A 92.683 41 3 0 1 41 60973376 60973336 3.130000e-05 60.2
53 TraesCS3D01G055800 chr7B 89.223 399 36 7 1704 2100 575389475 575389082 2.600000e-135 492.0
54 TraesCS3D01G055800 chr7A 82.739 533 52 25 441 947 75821955 75822473 3.440000e-119 438.0
55 TraesCS3D01G055800 chr1A 83.171 410 41 17 441 823 513686956 513686548 1.660000e-92 350.0
56 TraesCS3D01G055800 chrUn 96.053 76 3 0 1577 1652 108596670 108596745 1.090000e-24 124.0
57 TraesCS3D01G055800 chrUn 96.053 76 3 0 1577 1652 108613745 108613670 1.090000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G055800 chr3D 23090777 23093684 2907 False 5371.0 5371 100.000000 1 2908 1 chr3D.!!$F1 2907
1 TraesCS3D01G055800 chr2D 644221901 644222702 801 False 1184.0 1184 93.309000 2105 2908 1 chr2D.!!$F1 803
2 TraesCS3D01G055800 chr2D 18169383 18170010 627 True 832.0 832 90.566000 950 1582 1 chr2D.!!$R1 632
3 TraesCS3D01G055800 chr2D 70417565 70418224 659 True 765.0 765 87.783000 2104 2758 1 chr2D.!!$R2 654
4 TraesCS3D01G055800 chr2D 629645705 629646361 656 True 765.0 765 87.879000 2107 2758 1 chr2D.!!$R4 651
5 TraesCS3D01G055800 chr6D 36736586 36737380 794 True 1173.0 1173 93.176000 2104 2908 1 chr6D.!!$R1 804
6 TraesCS3D01G055800 chr7D 25762232 25763022 790 True 1168.0 1168 93.159000 2106 2908 1 chr7D.!!$R1 802
7 TraesCS3D01G055800 chr7D 599237138 599237928 790 True 1059.0 1059 90.729000 2104 2908 1 chr7D.!!$R3 804
8 TraesCS3D01G055800 chr7D 523519894 523520559 665 True 774.0 774 88.042000 2106 2758 1 chr7D.!!$R2 652
9 TraesCS3D01G055800 chr4D 503412056 503412903 847 False 1149.0 1149 91.551000 113 946 1 chr4D.!!$F3 833
10 TraesCS3D01G055800 chr4D 501114149 501114896 747 False 1138.0 1138 94.133000 2104 2852 1 chr4D.!!$F2 748
11 TraesCS3D01G055800 chr4D 494077333 494078068 735 False 1133.0 1133 94.444000 2104 2839 1 chr4D.!!$F1 735
12 TraesCS3D01G055800 chr4D 498751717 498752509 792 True 1027.0 1027 90.000000 2104 2908 1 chr4D.!!$R1 804
13 TraesCS3D01G055800 chr4D 502010448 502011108 660 True 767.0 767 87.820000 2104 2758 1 chr4D.!!$R2 654
14 TraesCS3D01G055800 chr4D 323097104 323097952 848 True 499.5 880 94.723000 1016 1652 2 chr4D.!!$R3 636
15 TraesCS3D01G055800 chr2B 132627858 132628661 803 True 1147.0 1147 92.432000 2104 2908 1 chr2B.!!$R1 804
16 TraesCS3D01G055800 chr2B 170855857 170858132 2275 False 500.5 590 90.288000 106 945 2 chr2B.!!$F2 839
17 TraesCS3D01G055800 chr5B 339285193 339286047 854 True 1090.0 1090 90.173000 112 946 1 chr5B.!!$R1 834
18 TraesCS3D01G055800 chr1D 458322747 458323540 793 True 1050.0 1050 90.482000 2105 2908 1 chr1D.!!$R1 803
19 TraesCS3D01G055800 chr1D 81645901 81646561 660 False 756.0 756 87.500000 2104 2758 1 chr1D.!!$F1 654
20 TraesCS3D01G055800 chr3B 40773179 40774176 997 False 403.0 959 93.446667 1 1649 3 chr3B.!!$F4 1648
21 TraesCS3D01G055800 chr4A 149046698 149047624 926 False 485.5 852 93.378500 947 1649 2 chr4A.!!$F1 702
22 TraesCS3D01G055800 chr5A 705402433 705403351 918 True 480.0 850 92.090500 950 1652 2 chr5A.!!$R2 702
23 TraesCS3D01G055800 chr4B 403253484 403254332 848 True 481.5 846 94.159000 1016 1652 2 chr4B.!!$R1 636
24 TraesCS3D01G055800 chr6B 694258905 694259828 923 False 467.5 833 91.062000 947 1649 2 chr6B.!!$F1 702
25 TraesCS3D01G055800 chr2A 19163590 19164217 627 True 832.0 832 90.566000 950 1582 1 chr2A.!!$R1 632
26 TraesCS3D01G055800 chr6A 603249194 603249756 562 False 819.0 819 92.908000 1016 1579 1 chr6A.!!$F2 563
27 TraesCS3D01G055800 chr6A 16088874 16089399 525 True 479.0 479 84.074000 441 948 1 chr6A.!!$R1 507
28 TraesCS3D01G055800 chr7A 75821955 75822473 518 False 438.0 438 82.739000 441 947 1 chr7A.!!$F1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
60 61 0.314302 CACCGCTCCTCCTTATACGG 59.686 60.0 0.0 0.0 45.86 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2052 3795 0.103937 CTCCTCGTTCCAGAGCATCC 59.896 60.0 0.0 0.0 36.95 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 2.266055 CACCTTCACCGCTCCTCC 59.734 66.667 0.00 0.00 0.00 4.30
56 57 1.123928 CCTTCACCGCTCCTCCTTAT 58.876 55.000 0.00 0.00 0.00 1.73
57 58 2.317040 CCTTCACCGCTCCTCCTTATA 58.683 52.381 0.00 0.00 0.00 0.98
59 60 1.315690 TCACCGCTCCTCCTTATACG 58.684 55.000 0.00 0.00 0.00 3.06
60 61 0.314302 CACCGCTCCTCCTTATACGG 59.686 60.000 0.00 0.00 45.86 4.02
101 102 3.207669 CTGCCCGCTCCATTGCTC 61.208 66.667 0.00 0.00 0.00 4.26
102 103 3.982316 CTGCCCGCTCCATTGCTCA 62.982 63.158 0.00 0.00 0.00 4.26
103 104 2.517875 GCCCGCTCCATTGCTCAT 60.518 61.111 0.00 0.00 0.00 2.90
104 105 2.550101 GCCCGCTCCATTGCTCATC 61.550 63.158 0.00 0.00 0.00 2.92
105 106 1.153107 CCCGCTCCATTGCTCATCA 60.153 57.895 0.00 0.00 0.00 3.07
106 107 0.749091 CCCGCTCCATTGCTCATCAA 60.749 55.000 0.00 0.00 39.32 2.57
107 108 0.661552 CCGCTCCATTGCTCATCAAG 59.338 55.000 0.00 0.00 38.22 3.02
272 277 6.146184 CCAACCTAGTCAGATACGCATTAATG 59.854 42.308 11.27 11.27 0.00 1.90
274 279 5.304614 ACCTAGTCAGATACGCATTAATGGT 59.695 40.000 17.02 14.32 0.00 3.55
280 285 5.523552 TCAGATACGCATTAATGGTGAACAG 59.476 40.000 17.02 6.74 0.00 3.16
975 2443 1.271597 GCTCCATCAACCACTCCACTT 60.272 52.381 0.00 0.00 0.00 3.16
982 2450 0.393077 AACCACTCCACTTCACTCCG 59.607 55.000 0.00 0.00 0.00 4.63
996 2476 3.655810 CTCCGCTCCTGTGCCTCAC 62.656 68.421 0.00 0.00 34.56 3.51
997 2477 3.699894 CCGCTCCTGTGCCTCACT 61.700 66.667 0.00 0.00 35.11 3.41
998 2478 2.125753 CGCTCCTGTGCCTCACTC 60.126 66.667 0.00 0.00 35.11 3.51
999 2479 2.935740 CGCTCCTGTGCCTCACTCA 61.936 63.158 0.00 0.00 35.11 3.41
1000 2480 1.079266 GCTCCTGTGCCTCACTCAG 60.079 63.158 0.00 0.00 39.19 3.35
1001 2481 1.539560 GCTCCTGTGCCTCACTCAGA 61.540 60.000 0.00 0.00 41.48 3.27
1011 2538 2.869636 GCCTCACTCAGACACCAAGAAG 60.870 54.545 0.00 0.00 0.00 2.85
1014 2541 2.036475 TCACTCAGACACCAAGAAGAGC 59.964 50.000 0.00 0.00 0.00 4.09
1185 2715 1.300971 CCGTGGATGTGACCAAGCTG 61.301 60.000 0.00 0.00 41.87 4.24
1536 3066 4.012895 CGGCAAGCTGTTTCGCGT 62.013 61.111 5.77 0.00 34.40 6.01
1606 3349 4.388499 GTGTGCCACCCCGACGAT 62.388 66.667 0.00 0.00 0.00 3.73
1636 3379 0.461548 ACTCCGTCATCATCGCACAT 59.538 50.000 0.00 0.00 0.00 3.21
1656 3399 2.032071 GTCCAAGGACGTGGTGGG 59.968 66.667 3.08 0.00 39.88 4.61
1657 3400 2.122769 TCCAAGGACGTGGTGGGA 60.123 61.111 0.00 0.00 39.88 4.37
1658 3401 1.766864 TCCAAGGACGTGGTGGGAA 60.767 57.895 0.00 0.00 39.88 3.97
1659 3402 1.149627 CCAAGGACGTGGTGGGAAA 59.850 57.895 0.00 0.00 33.63 3.13
1660 3403 1.170290 CCAAGGACGTGGTGGGAAAC 61.170 60.000 0.00 0.00 33.63 2.78
1661 3404 0.179029 CAAGGACGTGGTGGGAAACT 60.179 55.000 0.00 0.00 0.00 2.66
1662 3405 0.108019 AAGGACGTGGTGGGAAACTC 59.892 55.000 0.00 0.00 0.00 3.01
1663 3406 1.302271 GGACGTGGTGGGAAACTCC 60.302 63.158 0.00 0.00 35.23 3.85
1664 3407 1.752833 GACGTGGTGGGAAACTCCT 59.247 57.895 0.00 0.00 36.57 3.69
1665 3408 0.320508 GACGTGGTGGGAAACTCCTC 60.321 60.000 0.00 0.00 36.57 3.71
1666 3409 1.374252 CGTGGTGGGAAACTCCTCG 60.374 63.158 0.00 0.00 36.57 4.63
1667 3410 1.671379 GTGGTGGGAAACTCCTCGC 60.671 63.158 0.00 0.00 36.57 5.03
1668 3411 2.046217 GGTGGGAAACTCCTCGCC 60.046 66.667 0.00 0.00 36.57 5.54
1669 3412 2.046217 GTGGGAAACTCCTCGCCC 60.046 66.667 0.00 0.00 41.08 6.13
1670 3413 2.203938 TGGGAAACTCCTCGCCCT 60.204 61.111 0.00 0.00 41.28 5.19
1671 3414 2.291043 TGGGAAACTCCTCGCCCTC 61.291 63.158 0.00 0.00 41.28 4.30
1672 3415 1.990614 GGGAAACTCCTCGCCCTCT 60.991 63.158 0.00 0.00 36.57 3.69
1673 3416 1.219393 GGAAACTCCTCGCCCTCTG 59.781 63.158 0.00 0.00 32.53 3.35
1674 3417 1.448717 GAAACTCCTCGCCCTCTGC 60.449 63.158 0.00 0.00 0.00 4.26
1675 3418 2.172483 GAAACTCCTCGCCCTCTGCA 62.172 60.000 0.00 0.00 41.33 4.41
1676 3419 2.456287 AAACTCCTCGCCCTCTGCAC 62.456 60.000 0.00 0.00 41.33 4.57
1677 3420 4.504916 CTCCTCGCCCTCTGCACG 62.505 72.222 0.00 0.00 41.33 5.34
1686 3429 4.379243 CTCTGCACGCCCCGTCTT 62.379 66.667 0.00 0.00 38.32 3.01
1687 3430 4.373116 TCTGCACGCCCCGTCTTC 62.373 66.667 0.00 0.00 38.32 2.87
1691 3434 3.691342 CACGCCCCGTCTTCCTCA 61.691 66.667 0.00 0.00 38.32 3.86
1692 3435 2.920912 ACGCCCCGTCTTCCTCAA 60.921 61.111 0.00 0.00 33.69 3.02
1693 3436 2.434359 CGCCCCGTCTTCCTCAAC 60.434 66.667 0.00 0.00 0.00 3.18
1694 3437 2.046217 GCCCCGTCTTCCTCAACC 60.046 66.667 0.00 0.00 0.00 3.77
1695 3438 2.264794 CCCCGTCTTCCTCAACCG 59.735 66.667 0.00 0.00 0.00 4.44
1696 3439 2.434359 CCCGTCTTCCTCAACCGC 60.434 66.667 0.00 0.00 0.00 5.68
1697 3440 2.657237 CCGTCTTCCTCAACCGCT 59.343 61.111 0.00 0.00 0.00 5.52
1698 3441 1.601419 CCCGTCTTCCTCAACCGCTA 61.601 60.000 0.00 0.00 0.00 4.26
1699 3442 0.458025 CCGTCTTCCTCAACCGCTAC 60.458 60.000 0.00 0.00 0.00 3.58
1700 3443 0.242825 CGTCTTCCTCAACCGCTACA 59.757 55.000 0.00 0.00 0.00 2.74
1701 3444 1.732732 CGTCTTCCTCAACCGCTACAG 60.733 57.143 0.00 0.00 0.00 2.74
1702 3445 0.895530 TCTTCCTCAACCGCTACAGG 59.104 55.000 0.00 0.00 37.30 4.00
1703 3446 0.741221 CTTCCTCAACCGCTACAGGC 60.741 60.000 0.00 0.00 37.64 4.85
1721 3464 4.796495 GGCGGCGACCCATCCTTT 62.796 66.667 12.98 0.00 0.00 3.11
1722 3465 3.508840 GCGGCGACCCATCCTTTG 61.509 66.667 12.98 0.00 0.00 2.77
1723 3466 3.508840 CGGCGACCCATCCTTTGC 61.509 66.667 0.00 0.00 0.00 3.68
1724 3467 3.140814 GGCGACCCATCCTTTGCC 61.141 66.667 0.00 0.00 35.04 4.52
1725 3468 3.140814 GCGACCCATCCTTTGCCC 61.141 66.667 0.00 0.00 0.00 5.36
1726 3469 2.440247 CGACCCATCCTTTGCCCC 60.440 66.667 0.00 0.00 0.00 5.80
1727 3470 2.042944 GACCCATCCTTTGCCCCC 60.043 66.667 0.00 0.00 0.00 5.40
1728 3471 2.537959 ACCCATCCTTTGCCCCCT 60.538 61.111 0.00 0.00 0.00 4.79
1729 3472 1.230482 ACCCATCCTTTGCCCCCTA 60.230 57.895 0.00 0.00 0.00 3.53
1730 3473 1.230212 CCCATCCTTTGCCCCCTAC 59.770 63.158 0.00 0.00 0.00 3.18
1731 3474 1.230212 CCATCCTTTGCCCCCTACC 59.770 63.158 0.00 0.00 0.00 3.18
1732 3475 1.289244 CCATCCTTTGCCCCCTACCT 61.289 60.000 0.00 0.00 0.00 3.08
1733 3476 0.183731 CATCCTTTGCCCCCTACCTC 59.816 60.000 0.00 0.00 0.00 3.85
1734 3477 0.994050 ATCCTTTGCCCCCTACCTCC 60.994 60.000 0.00 0.00 0.00 4.30
1735 3478 2.590092 CTTTGCCCCCTACCTCCG 59.410 66.667 0.00 0.00 0.00 4.63
1736 3479 3.699134 CTTTGCCCCCTACCTCCGC 62.699 68.421 0.00 0.00 0.00 5.54
1743 3486 3.905678 CCTACCTCCGCCAGCGAG 61.906 72.222 14.67 8.85 42.83 5.03
1744 3487 2.829003 CTACCTCCGCCAGCGAGA 60.829 66.667 14.67 8.22 42.83 4.04
1745 3488 2.123854 TACCTCCGCCAGCGAGAT 60.124 61.111 14.67 0.00 42.83 2.75
1746 3489 2.136196 CTACCTCCGCCAGCGAGATC 62.136 65.000 14.67 0.00 42.83 2.75
1747 3490 4.637489 CCTCCGCCAGCGAGATCG 62.637 72.222 14.67 0.00 42.83 3.69
1757 3500 2.415010 CGAGATCGCTGGTCCCTG 59.585 66.667 0.00 0.00 0.00 4.45
1758 3501 2.107953 GAGATCGCTGGTCCCTGC 59.892 66.667 5.21 5.21 37.50 4.85
1759 3502 3.453070 GAGATCGCTGGTCCCTGCC 62.453 68.421 9.30 0.00 37.56 4.85
1760 3503 3.474570 GATCGCTGGTCCCTGCCT 61.475 66.667 9.30 0.00 37.56 4.75
1761 3504 3.453070 GATCGCTGGTCCCTGCCTC 62.453 68.421 9.30 3.80 37.56 4.70
1764 3507 3.791586 GCTGGTCCCTGCCTCCTC 61.792 72.222 3.98 0.00 35.31 3.71
1765 3508 3.086600 CTGGTCCCTGCCTCCTCC 61.087 72.222 0.00 0.00 0.00 4.30
1768 3511 3.462678 GTCCCTGCCTCCTCCGTC 61.463 72.222 0.00 0.00 0.00 4.79
1769 3512 4.779733 TCCCTGCCTCCTCCGTCC 62.780 72.222 0.00 0.00 0.00 4.79
1776 3519 3.136123 CTCCTCCGTCCGCCGTTA 61.136 66.667 0.00 0.00 33.66 3.18
1777 3520 3.407046 CTCCTCCGTCCGCCGTTAC 62.407 68.421 0.00 0.00 33.66 2.50
1778 3521 4.842091 CCTCCGTCCGCCGTTACG 62.842 72.222 0.00 0.00 38.80 3.18
1822 3565 2.787249 CGCTTCGCCATTGGTGAG 59.213 61.111 17.88 13.31 43.44 3.51
1823 3566 2.034879 CGCTTCGCCATTGGTGAGT 61.035 57.895 17.88 0.00 43.44 3.41
1824 3567 0.739462 CGCTTCGCCATTGGTGAGTA 60.739 55.000 17.88 4.90 43.44 2.59
1825 3568 1.009829 GCTTCGCCATTGGTGAGTAG 58.990 55.000 17.88 14.63 43.44 2.57
1826 3569 1.676014 GCTTCGCCATTGGTGAGTAGT 60.676 52.381 17.88 0.00 43.44 2.73
1827 3570 2.699954 CTTCGCCATTGGTGAGTAGTT 58.300 47.619 17.88 0.00 43.44 2.24
1828 3571 3.857052 CTTCGCCATTGGTGAGTAGTTA 58.143 45.455 17.88 2.82 43.44 2.24
1829 3572 3.520290 TCGCCATTGGTGAGTAGTTAG 57.480 47.619 14.95 0.00 37.29 2.34
1830 3573 3.093814 TCGCCATTGGTGAGTAGTTAGA 58.906 45.455 14.95 0.00 37.29 2.10
1831 3574 3.130516 TCGCCATTGGTGAGTAGTTAGAG 59.869 47.826 14.95 0.00 37.29 2.43
1832 3575 3.198872 GCCATTGGTGAGTAGTTAGAGC 58.801 50.000 4.26 0.00 0.00 4.09
1833 3576 3.118592 GCCATTGGTGAGTAGTTAGAGCT 60.119 47.826 4.26 0.00 0.00 4.09
1834 3577 4.437239 CCATTGGTGAGTAGTTAGAGCTG 58.563 47.826 0.00 0.00 0.00 4.24
1835 3578 4.437239 CATTGGTGAGTAGTTAGAGCTGG 58.563 47.826 0.00 0.00 0.00 4.85
1836 3579 3.451402 TGGTGAGTAGTTAGAGCTGGA 57.549 47.619 0.00 0.00 0.00 3.86
1837 3580 3.090037 TGGTGAGTAGTTAGAGCTGGAC 58.910 50.000 0.00 0.00 0.00 4.02
1838 3581 3.245300 TGGTGAGTAGTTAGAGCTGGACT 60.245 47.826 0.00 0.00 0.00 3.85
1839 3582 4.018688 TGGTGAGTAGTTAGAGCTGGACTA 60.019 45.833 0.00 0.00 0.00 2.59
1840 3583 4.577283 GGTGAGTAGTTAGAGCTGGACTAG 59.423 50.000 0.00 0.00 0.00 2.57
1841 3584 4.577283 GTGAGTAGTTAGAGCTGGACTAGG 59.423 50.000 0.00 0.00 0.00 3.02
1842 3585 4.227754 TGAGTAGTTAGAGCTGGACTAGGT 59.772 45.833 0.00 0.00 40.52 3.08
1843 3586 5.195185 GAGTAGTTAGAGCTGGACTAGGTT 58.805 45.833 0.00 0.00 37.23 3.50
1844 3587 5.581975 AGTAGTTAGAGCTGGACTAGGTTT 58.418 41.667 0.00 0.00 37.23 3.27
1845 3588 6.017830 AGTAGTTAGAGCTGGACTAGGTTTT 58.982 40.000 0.00 0.00 37.23 2.43
1846 3589 5.827326 AGTTAGAGCTGGACTAGGTTTTT 57.173 39.130 0.00 0.00 37.23 1.94
1860 3603 4.988744 TTTTTCAGGGGCGTCACA 57.011 50.000 0.00 0.00 0.00 3.58
1861 3604 3.430473 TTTTTCAGGGGCGTCACAT 57.570 47.368 0.00 0.00 0.00 3.21
1862 3605 1.243902 TTTTTCAGGGGCGTCACATC 58.756 50.000 0.00 0.00 0.00 3.06
1863 3606 0.953471 TTTTCAGGGGCGTCACATCG 60.953 55.000 0.00 0.00 0.00 3.84
1864 3607 2.796483 TTTCAGGGGCGTCACATCGG 62.796 60.000 0.00 0.00 0.00 4.18
1865 3608 4.082523 CAGGGGCGTCACATCGGT 62.083 66.667 0.00 0.00 0.00 4.69
1866 3609 4.082523 AGGGGCGTCACATCGGTG 62.083 66.667 0.00 0.00 46.66 4.94
1894 3637 1.129326 GACATCGCGTCGGAATAAGG 58.871 55.000 5.77 0.00 34.19 2.69
1895 3638 0.458669 ACATCGCGTCGGAATAAGGT 59.541 50.000 5.77 0.00 0.00 3.50
1896 3639 0.852777 CATCGCGTCGGAATAAGGTG 59.147 55.000 5.77 0.00 0.00 4.00
1897 3640 0.874607 ATCGCGTCGGAATAAGGTGC 60.875 55.000 5.77 0.00 0.00 5.01
1898 3641 2.522638 CGCGTCGGAATAAGGTGCC 61.523 63.158 0.00 0.00 0.00 5.01
1899 3642 1.153429 GCGTCGGAATAAGGTGCCT 60.153 57.895 0.00 0.00 0.00 4.75
1900 3643 1.152383 GCGTCGGAATAAGGTGCCTC 61.152 60.000 0.00 0.00 0.00 4.70
1901 3644 0.460311 CGTCGGAATAAGGTGCCTCT 59.540 55.000 0.00 0.00 0.00 3.69
1902 3645 1.802880 CGTCGGAATAAGGTGCCTCTG 60.803 57.143 0.00 0.00 0.00 3.35
1903 3646 0.178068 TCGGAATAAGGTGCCTCTGC 59.822 55.000 0.00 0.00 38.26 4.26
1904 3647 0.179000 CGGAATAAGGTGCCTCTGCT 59.821 55.000 0.00 0.00 38.71 4.24
1905 3648 1.407437 CGGAATAAGGTGCCTCTGCTT 60.407 52.381 0.00 0.00 38.71 3.91
1906 3649 2.293170 GGAATAAGGTGCCTCTGCTTC 58.707 52.381 0.00 0.00 38.71 3.86
1907 3650 2.092699 GGAATAAGGTGCCTCTGCTTCT 60.093 50.000 0.00 0.00 38.71 2.85
1908 3651 2.998316 ATAAGGTGCCTCTGCTTCTC 57.002 50.000 0.00 0.00 38.71 2.87
1909 3652 0.905357 TAAGGTGCCTCTGCTTCTCC 59.095 55.000 0.00 0.00 38.71 3.71
1910 3653 1.846712 AAGGTGCCTCTGCTTCTCCC 61.847 60.000 0.00 0.00 38.71 4.30
1911 3654 2.270527 GTGCCTCTGCTTCTCCCC 59.729 66.667 0.00 0.00 38.71 4.81
1912 3655 3.011517 TGCCTCTGCTTCTCCCCC 61.012 66.667 0.00 0.00 38.71 5.40
1913 3656 3.011517 GCCTCTGCTTCTCCCCCA 61.012 66.667 0.00 0.00 33.53 4.96
1914 3657 2.381941 GCCTCTGCTTCTCCCCCAT 61.382 63.158 0.00 0.00 33.53 4.00
1915 3658 1.835693 CCTCTGCTTCTCCCCCATC 59.164 63.158 0.00 0.00 0.00 3.51
1916 3659 0.693767 CCTCTGCTTCTCCCCCATCT 60.694 60.000 0.00 0.00 0.00 2.90
1917 3660 1.211456 CTCTGCTTCTCCCCCATCTT 58.789 55.000 0.00 0.00 0.00 2.40
1918 3661 0.914644 TCTGCTTCTCCCCCATCTTG 59.085 55.000 0.00 0.00 0.00 3.02
1919 3662 0.106819 CTGCTTCTCCCCCATCTTGG 60.107 60.000 0.00 0.00 37.25 3.61
1920 3663 1.454663 GCTTCTCCCCCATCTTGGC 60.455 63.158 0.00 0.00 35.79 4.52
1921 3664 1.153086 CTTCTCCCCCATCTTGGCG 60.153 63.158 0.00 0.00 35.79 5.69
1922 3665 2.615227 CTTCTCCCCCATCTTGGCGG 62.615 65.000 0.00 0.00 36.80 6.13
1923 3666 3.411517 CTCCCCCATCTTGGCGGT 61.412 66.667 0.00 0.00 36.81 5.68
1924 3667 3.704231 CTCCCCCATCTTGGCGGTG 62.704 68.421 0.00 0.00 36.81 4.94
1926 3669 4.431131 CCCCATCTTGGCGGTGCT 62.431 66.667 0.00 0.00 35.79 4.40
1927 3670 2.825836 CCCATCTTGGCGGTGCTC 60.826 66.667 0.00 0.00 35.79 4.26
1928 3671 2.270205 CCATCTTGGCGGTGCTCT 59.730 61.111 0.00 0.00 0.00 4.09
1929 3672 2.110967 CCATCTTGGCGGTGCTCTG 61.111 63.158 0.00 0.00 0.00 3.35
1930 3673 1.078918 CATCTTGGCGGTGCTCTGA 60.079 57.895 0.00 0.00 0.00 3.27
1931 3674 0.674581 CATCTTGGCGGTGCTCTGAA 60.675 55.000 0.00 0.00 0.00 3.02
1932 3675 0.674895 ATCTTGGCGGTGCTCTGAAC 60.675 55.000 0.00 0.00 0.00 3.18
1933 3676 2.664851 TTGGCGGTGCTCTGAACG 60.665 61.111 0.00 0.00 0.00 3.95
1934 3677 4.680237 TGGCGGTGCTCTGAACGG 62.680 66.667 0.00 0.00 0.00 4.44
1937 3680 4.717629 CGGTGCTCTGAACGGCGA 62.718 66.667 16.62 0.00 0.00 5.54
1938 3681 3.112709 GGTGCTCTGAACGGCGAC 61.113 66.667 16.62 7.98 0.00 5.19
1951 3694 3.869272 GCGACGCCATGAAGCAGG 61.869 66.667 9.14 0.00 0.00 4.85
1952 3695 2.434884 CGACGCCATGAAGCAGGT 60.435 61.111 0.00 0.00 0.00 4.00
1953 3696 2.743752 CGACGCCATGAAGCAGGTG 61.744 63.158 0.00 0.00 41.14 4.00
1954 3697 2.360350 ACGCCATGAAGCAGGTGG 60.360 61.111 0.00 0.00 39.69 4.61
1964 3707 2.360475 GCAGGTGGCTTGGTCCTC 60.360 66.667 0.00 0.00 40.25 3.71
1965 3708 2.900106 GCAGGTGGCTTGGTCCTCT 61.900 63.158 0.00 0.00 40.25 3.69
1966 3709 1.298014 CAGGTGGCTTGGTCCTCTC 59.702 63.158 0.00 0.00 0.00 3.20
1967 3710 2.266055 GGTGGCTTGGTCCTCTCG 59.734 66.667 0.00 0.00 0.00 4.04
1968 3711 2.435059 GTGGCTTGGTCCTCTCGC 60.435 66.667 0.00 0.00 0.00 5.03
1969 3712 3.706373 TGGCTTGGTCCTCTCGCC 61.706 66.667 0.00 0.00 41.06 5.54
1970 3713 4.821589 GGCTTGGTCCTCTCGCCG 62.822 72.222 0.00 0.00 0.00 6.46
1971 3714 4.070552 GCTTGGTCCTCTCGCCGT 62.071 66.667 0.00 0.00 0.00 5.68
1972 3715 2.657237 CTTGGTCCTCTCGCCGTT 59.343 61.111 0.00 0.00 0.00 4.44
1973 3716 1.446272 CTTGGTCCTCTCGCCGTTC 60.446 63.158 0.00 0.00 0.00 3.95
1974 3717 1.878656 CTTGGTCCTCTCGCCGTTCT 61.879 60.000 0.00 0.00 0.00 3.01
1975 3718 1.469335 TTGGTCCTCTCGCCGTTCTT 61.469 55.000 0.00 0.00 0.00 2.52
1976 3719 1.292541 GGTCCTCTCGCCGTTCTTT 59.707 57.895 0.00 0.00 0.00 2.52
1977 3720 0.736672 GGTCCTCTCGCCGTTCTTTC 60.737 60.000 0.00 0.00 0.00 2.62
1978 3721 1.071567 GTCCTCTCGCCGTTCTTTCG 61.072 60.000 0.00 0.00 0.00 3.46
1979 3722 1.211969 CCTCTCGCCGTTCTTTCGA 59.788 57.895 0.00 0.00 0.00 3.71
1980 3723 0.179134 CCTCTCGCCGTTCTTTCGAT 60.179 55.000 0.00 0.00 0.00 3.59
1981 3724 1.192793 CTCTCGCCGTTCTTTCGATC 58.807 55.000 0.00 0.00 0.00 3.69
1982 3725 0.809385 TCTCGCCGTTCTTTCGATCT 59.191 50.000 0.00 0.00 0.00 2.75
1983 3726 0.917259 CTCGCCGTTCTTTCGATCTG 59.083 55.000 0.00 0.00 0.00 2.90
1984 3727 0.457853 TCGCCGTTCTTTCGATCTGG 60.458 55.000 0.00 0.00 0.00 3.86
1985 3728 0.736325 CGCCGTTCTTTCGATCTGGT 60.736 55.000 0.00 0.00 0.00 4.00
1986 3729 0.721718 GCCGTTCTTTCGATCTGGTG 59.278 55.000 0.00 0.00 0.00 4.17
1987 3730 1.671850 GCCGTTCTTTCGATCTGGTGA 60.672 52.381 0.00 0.00 0.00 4.02
1988 3731 2.263077 CCGTTCTTTCGATCTGGTGAG 58.737 52.381 0.00 0.00 0.00 3.51
1989 3732 2.094700 CCGTTCTTTCGATCTGGTGAGA 60.095 50.000 0.00 0.00 0.00 3.27
1990 3733 3.429547 CCGTTCTTTCGATCTGGTGAGAT 60.430 47.826 0.00 0.00 42.02 2.75
1991 3734 4.177026 CGTTCTTTCGATCTGGTGAGATT 58.823 43.478 0.00 0.00 39.19 2.40
1992 3735 5.340803 CGTTCTTTCGATCTGGTGAGATTA 58.659 41.667 0.00 0.00 39.19 1.75
1993 3736 5.457148 CGTTCTTTCGATCTGGTGAGATTAG 59.543 44.000 0.00 0.00 39.19 1.73
1994 3737 6.334202 GTTCTTTCGATCTGGTGAGATTAGT 58.666 40.000 0.00 0.00 39.19 2.24
1995 3738 6.531503 TCTTTCGATCTGGTGAGATTAGTT 57.468 37.500 0.00 0.00 39.19 2.24
1996 3739 6.936279 TCTTTCGATCTGGTGAGATTAGTTT 58.064 36.000 0.00 0.00 39.19 2.66
1997 3740 7.036220 TCTTTCGATCTGGTGAGATTAGTTTC 58.964 38.462 0.00 0.00 39.19 2.78
1998 3741 6.531503 TTCGATCTGGTGAGATTAGTTTCT 57.468 37.500 0.00 0.00 39.19 2.52
1999 3742 6.137794 TCGATCTGGTGAGATTAGTTTCTC 57.862 41.667 0.00 0.00 39.19 2.87
2000 3743 4.973051 CGATCTGGTGAGATTAGTTTCTCG 59.027 45.833 0.00 0.00 44.22 4.04
2001 3744 5.220873 CGATCTGGTGAGATTAGTTTCTCGA 60.221 44.000 0.00 0.00 44.22 4.04
2002 3745 6.514212 CGATCTGGTGAGATTAGTTTCTCGAT 60.514 42.308 0.00 0.00 44.22 3.59
2003 3746 5.895928 TCTGGTGAGATTAGTTTCTCGATG 58.104 41.667 0.00 0.00 44.22 3.84
2004 3747 5.419155 TCTGGTGAGATTAGTTTCTCGATGT 59.581 40.000 0.00 0.00 44.22 3.06
2005 3748 5.410924 TGGTGAGATTAGTTTCTCGATGTG 58.589 41.667 0.00 0.00 44.22 3.21
2006 3749 5.047306 TGGTGAGATTAGTTTCTCGATGTGT 60.047 40.000 0.00 0.00 44.22 3.72
2007 3750 5.869888 GGTGAGATTAGTTTCTCGATGTGTT 59.130 40.000 0.00 0.00 44.22 3.32
2008 3751 6.035112 GGTGAGATTAGTTTCTCGATGTGTTC 59.965 42.308 0.00 0.00 44.22 3.18
2009 3752 6.809196 GTGAGATTAGTTTCTCGATGTGTTCT 59.191 38.462 0.00 0.00 44.22 3.01
2010 3753 6.808704 TGAGATTAGTTTCTCGATGTGTTCTG 59.191 38.462 0.00 0.00 44.22 3.02
2011 3754 6.102663 AGATTAGTTTCTCGATGTGTTCTGG 58.897 40.000 0.00 0.00 0.00 3.86
2012 3755 2.417719 AGTTTCTCGATGTGTTCTGGC 58.582 47.619 0.00 0.00 0.00 4.85
2013 3756 1.126846 GTTTCTCGATGTGTTCTGGCG 59.873 52.381 0.00 0.00 0.00 5.69
2014 3757 0.389817 TTCTCGATGTGTTCTGGCGG 60.390 55.000 0.00 0.00 0.00 6.13
2015 3758 1.079819 CTCGATGTGTTCTGGCGGT 60.080 57.895 0.00 0.00 0.00 5.68
2016 3759 0.670546 CTCGATGTGTTCTGGCGGTT 60.671 55.000 0.00 0.00 0.00 4.44
2017 3760 0.948623 TCGATGTGTTCTGGCGGTTG 60.949 55.000 0.00 0.00 0.00 3.77
2018 3761 1.227999 CGATGTGTTCTGGCGGTTGT 61.228 55.000 0.00 0.00 0.00 3.32
2019 3762 0.517316 GATGTGTTCTGGCGGTTGTC 59.483 55.000 0.00 0.00 0.00 3.18
2020 3763 1.227999 ATGTGTTCTGGCGGTTGTCG 61.228 55.000 0.00 0.00 42.76 4.35
2021 3764 2.280524 TGTTCTGGCGGTTGTCGG 60.281 61.111 0.00 0.00 39.69 4.79
2022 3765 2.280592 GTTCTGGCGGTTGTCGGT 60.281 61.111 0.00 0.00 39.69 4.69
2023 3766 2.029964 TTCTGGCGGTTGTCGGTC 59.970 61.111 0.00 0.00 39.69 4.79
2024 3767 3.851845 TTCTGGCGGTTGTCGGTCG 62.852 63.158 0.00 0.00 39.69 4.79
2063 3806 3.531207 CGAGGCGGATGCTCTGGA 61.531 66.667 0.00 0.00 42.25 3.86
2064 3807 2.903357 GAGGCGGATGCTCTGGAA 59.097 61.111 0.00 0.00 42.25 3.53
2065 3808 1.522580 GAGGCGGATGCTCTGGAAC 60.523 63.158 0.00 0.00 42.25 3.62
2066 3809 2.892425 GGCGGATGCTCTGGAACG 60.892 66.667 0.00 0.00 42.25 3.95
2067 3810 2.184322 GCGGATGCTCTGGAACGA 59.816 61.111 0.00 0.00 38.39 3.85
2068 3811 1.880340 GCGGATGCTCTGGAACGAG 60.880 63.158 0.00 0.00 38.39 4.18
2069 3812 1.227089 CGGATGCTCTGGAACGAGG 60.227 63.158 0.00 0.00 31.64 4.63
2070 3813 1.667154 CGGATGCTCTGGAACGAGGA 61.667 60.000 0.00 0.00 34.71 3.71
2071 3814 0.103937 GGATGCTCTGGAACGAGGAG 59.896 60.000 0.00 0.00 33.95 3.69
2072 3815 0.103937 GATGCTCTGGAACGAGGAGG 59.896 60.000 0.00 0.00 33.95 4.30
2073 3816 0.616111 ATGCTCTGGAACGAGGAGGT 60.616 55.000 0.00 0.00 33.95 3.85
2074 3817 0.832135 TGCTCTGGAACGAGGAGGTT 60.832 55.000 0.00 0.00 31.64 3.50
2075 3818 0.390472 GCTCTGGAACGAGGAGGTTG 60.390 60.000 0.00 0.00 31.64 3.77
2076 3819 0.247736 CTCTGGAACGAGGAGGTTGG 59.752 60.000 0.00 0.00 0.00 3.77
2077 3820 1.376037 CTGGAACGAGGAGGTTGGC 60.376 63.158 0.00 0.00 0.00 4.52
2078 3821 1.831652 CTGGAACGAGGAGGTTGGCT 61.832 60.000 0.00 0.00 0.00 4.75
2079 3822 1.079057 GGAACGAGGAGGTTGGCTC 60.079 63.158 0.00 0.00 0.00 4.70
2080 3823 1.446272 GAACGAGGAGGTTGGCTCG 60.446 63.158 0.00 0.00 43.89 5.03
2081 3824 1.874345 GAACGAGGAGGTTGGCTCGA 61.874 60.000 0.00 0.00 41.24 4.04
2082 3825 1.258445 AACGAGGAGGTTGGCTCGAT 61.258 55.000 0.00 0.00 41.24 3.59
2083 3826 1.227089 CGAGGAGGTTGGCTCGATG 60.227 63.158 0.00 0.00 41.24 3.84
2084 3827 1.144936 GAGGAGGTTGGCTCGATGG 59.855 63.158 0.00 0.00 0.00 3.51
2085 3828 1.613630 AGGAGGTTGGCTCGATGGT 60.614 57.895 0.00 0.00 0.00 3.55
2086 3829 1.450312 GGAGGTTGGCTCGATGGTG 60.450 63.158 0.00 0.00 0.00 4.17
2087 3830 1.450312 GAGGTTGGCTCGATGGTGG 60.450 63.158 0.00 0.00 0.00 4.61
2088 3831 2.185310 GAGGTTGGCTCGATGGTGGT 62.185 60.000 0.00 0.00 0.00 4.16
2089 3832 2.040544 GGTTGGCTCGATGGTGGTG 61.041 63.158 0.00 0.00 0.00 4.17
2090 3833 2.040544 GTTGGCTCGATGGTGGTGG 61.041 63.158 0.00 0.00 0.00 4.61
2091 3834 2.220586 TTGGCTCGATGGTGGTGGA 61.221 57.895 0.00 0.00 0.00 4.02
2092 3835 1.561769 TTGGCTCGATGGTGGTGGAT 61.562 55.000 0.00 0.00 0.00 3.41
2093 3836 1.227674 GGCTCGATGGTGGTGGATC 60.228 63.158 0.00 0.00 0.00 3.36
2094 3837 1.690219 GGCTCGATGGTGGTGGATCT 61.690 60.000 0.00 0.00 0.00 2.75
2095 3838 1.040646 GCTCGATGGTGGTGGATCTA 58.959 55.000 0.00 0.00 0.00 1.98
2096 3839 1.620819 GCTCGATGGTGGTGGATCTAT 59.379 52.381 0.00 0.00 0.00 1.98
2097 3840 2.353208 GCTCGATGGTGGTGGATCTATC 60.353 54.545 0.00 0.00 0.00 2.08
2098 3841 1.886542 TCGATGGTGGTGGATCTATCG 59.113 52.381 0.00 0.00 38.86 2.92
2099 3842 1.613925 CGATGGTGGTGGATCTATCGT 59.386 52.381 0.00 0.00 34.43 3.73
2100 3843 2.351835 CGATGGTGGTGGATCTATCGTC 60.352 54.545 0.00 0.00 34.43 4.20
2101 3844 1.029681 TGGTGGTGGATCTATCGTCG 58.970 55.000 0.00 0.00 0.00 5.12
2102 3845 1.030457 GGTGGTGGATCTATCGTCGT 58.970 55.000 0.00 0.00 0.00 4.34
2166 3909 1.302192 CACGAACCGGGACCAATGT 60.302 57.895 6.32 0.00 28.17 2.71
2263 4007 0.251564 TTTGTCCCGGTTCATGGCAT 60.252 50.000 0.00 0.00 0.00 4.40
2303 4058 3.003173 CTCCTGGCCCGTTCCTGA 61.003 66.667 0.00 0.00 0.00 3.86
2337 4092 2.344025 GTTCCGGTTCGTAGCTTGAAT 58.656 47.619 0.00 0.00 0.00 2.57
2435 4196 1.142748 GGCGAGCAGAGCACTACAT 59.857 57.895 0.00 0.00 36.08 2.29
2481 4243 1.610379 GGAGGGCATTTGGGTGCTT 60.610 57.895 0.00 0.00 44.45 3.91
2523 4285 2.290260 TGAGGTGTTCGATGAAATGCCT 60.290 45.455 0.00 0.00 0.00 4.75
2530 4292 1.134007 TCGATGAAATGCCTGAGCCAT 60.134 47.619 0.00 0.00 38.69 4.40
2551 4313 6.517605 CCATACTAGTTAAGCTTTCTCCTCC 58.482 44.000 3.20 0.00 0.00 4.30
2631 4394 1.913762 CCCTGTCCCCGTCTTCACT 60.914 63.158 0.00 0.00 0.00 3.41
2694 4461 4.640771 TGGTGAGCCTCTTGTTCTTATT 57.359 40.909 0.00 0.00 35.27 1.40
2857 4643 1.064758 AGGGCGTGCATAATTTCCTCA 60.065 47.619 0.00 0.00 0.00 3.86
2866 4652 5.125417 GTGCATAATTTCCTCAAAGTGGCTA 59.875 40.000 0.00 0.00 0.00 3.93
2869 4655 4.790765 AATTTCCTCAAAGTGGCTAAGC 57.209 40.909 0.00 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.133253 CAAGCTTCACGCGTCCATG 59.867 57.895 9.86 0.00 45.59 3.66
7 8 2.680913 GCAAGCTTCACGCGTCCAT 61.681 57.895 9.86 0.00 45.59 3.41
10 11 1.510623 CATGCAAGCTTCACGCGTC 60.511 57.895 9.86 0.00 45.59 5.19
11 12 2.557805 CATGCAAGCTTCACGCGT 59.442 55.556 5.58 5.58 45.59 6.01
46 47 1.333177 AGCTGCCGTATAAGGAGGAG 58.667 55.000 9.10 2.16 0.00 3.69
52 53 9.245962 GGTATAAATATGTAGCTGCCGTATAAG 57.754 37.037 0.00 0.00 0.00 1.73
56 57 5.105228 GGGGTATAAATATGTAGCTGCCGTA 60.105 44.000 0.00 0.00 0.00 4.02
57 58 4.323257 GGGGTATAAATATGTAGCTGCCGT 60.323 45.833 0.00 0.00 0.00 5.68
59 60 4.189231 CGGGGTATAAATATGTAGCTGCC 58.811 47.826 0.00 0.00 0.00 4.85
60 61 4.630069 CACGGGGTATAAATATGTAGCTGC 59.370 45.833 0.00 0.00 0.00 5.25
101 102 3.278668 AATCCAGTCTCCTGCTTGATG 57.721 47.619 0.00 0.00 37.38 3.07
102 103 4.018597 AGAAAATCCAGTCTCCTGCTTGAT 60.019 41.667 0.00 0.00 37.38 2.57
103 104 3.328931 AGAAAATCCAGTCTCCTGCTTGA 59.671 43.478 0.00 0.00 37.38 3.02
104 105 3.683802 AGAAAATCCAGTCTCCTGCTTG 58.316 45.455 0.00 0.00 37.38 4.01
105 106 4.323868 GGTAGAAAATCCAGTCTCCTGCTT 60.324 45.833 0.00 0.00 37.38 3.91
106 107 3.198853 GGTAGAAAATCCAGTCTCCTGCT 59.801 47.826 0.00 0.00 37.38 4.24
107 108 3.536570 GGTAGAAAATCCAGTCTCCTGC 58.463 50.000 0.00 0.00 37.38 4.85
108 109 3.195825 ACGGTAGAAAATCCAGTCTCCTG 59.804 47.826 0.00 0.00 38.50 3.86
109 110 3.195825 CACGGTAGAAAATCCAGTCTCCT 59.804 47.826 0.00 0.00 0.00 3.69
110 111 3.522553 CACGGTAGAAAATCCAGTCTCC 58.477 50.000 0.00 0.00 0.00 3.71
280 285 6.425114 TCTTGAGCTCAAAACAGTGTCTTATC 59.575 38.462 28.16 0.00 35.15 1.75
718 2146 5.064325 ACCGAACAGAAAGAGTTGTTTGTAC 59.936 40.000 4.46 0.00 37.63 2.90
720 2148 4.007659 ACCGAACAGAAAGAGTTGTTTGT 58.992 39.130 4.46 0.00 37.63 2.83
722 2150 4.698304 TCAACCGAACAGAAAGAGTTGTTT 59.302 37.500 0.00 0.00 37.63 2.83
726 2176 4.703897 TCATCAACCGAACAGAAAGAGTT 58.296 39.130 0.00 0.00 0.00 3.01
823 2276 9.073368 CAATGGCATACACGTACTAGTATATTC 57.927 37.037 5.75 0.00 30.23 1.75
843 2296 0.815734 ATCTGAGTGCAAGCAATGGC 59.184 50.000 0.00 0.00 41.61 4.40
921 2389 2.355010 AAGCTATTCTCCCATGCACC 57.645 50.000 0.00 0.00 0.00 5.01
975 2443 3.695606 GGCACAGGAGCGGAGTGA 61.696 66.667 0.00 0.00 35.33 3.41
982 2450 1.079266 CTGAGTGAGGCACAGGAGC 60.079 63.158 0.00 0.00 36.74 4.70
996 2476 2.827800 TGCTCTTCTTGGTGTCTGAG 57.172 50.000 0.00 0.00 0.00 3.35
997 2477 3.558931 TTTGCTCTTCTTGGTGTCTGA 57.441 42.857 0.00 0.00 0.00 3.27
998 2478 4.543692 CATTTTGCTCTTCTTGGTGTCTG 58.456 43.478 0.00 0.00 0.00 3.51
999 2479 3.571401 CCATTTTGCTCTTCTTGGTGTCT 59.429 43.478 0.00 0.00 0.00 3.41
1000 2480 3.569701 TCCATTTTGCTCTTCTTGGTGTC 59.430 43.478 0.00 0.00 0.00 3.67
1001 2481 3.565307 TCCATTTTGCTCTTCTTGGTGT 58.435 40.909 0.00 0.00 0.00 4.16
1011 2538 1.477553 TCTGGGCATCCATTTTGCTC 58.522 50.000 0.00 0.00 43.11 4.26
1014 2541 3.592059 CTTGTTCTGGGCATCCATTTTG 58.408 45.455 0.00 0.00 43.11 2.44
1117 2647 2.202623 GGTGAAGAGCGCGTCGAT 60.203 61.111 8.43 0.00 0.00 3.59
1173 2703 4.284550 GGGCCCAGCTTGGTCACA 62.285 66.667 19.95 0.00 35.17 3.58
1520 3050 2.427410 CACGCGAAACAGCTTGCC 60.427 61.111 15.93 0.00 34.40 4.52
1606 3349 3.528853 ACGGAGTTCACCACGTCA 58.471 55.556 0.00 0.00 37.78 4.35
1636 3379 0.682852 CCACCACGTCCTTGGACTTA 59.317 55.000 16.60 0.00 39.24 2.24
1652 3395 2.046217 GGGCGAGGAGTTTCCCAC 60.046 66.667 0.00 0.00 37.19 4.61
1653 3396 2.203938 AGGGCGAGGAGTTTCCCA 60.204 61.111 0.00 0.00 41.22 4.37
1654 3397 1.990614 AGAGGGCGAGGAGTTTCCC 60.991 63.158 0.00 0.00 37.19 3.97
1655 3398 1.219393 CAGAGGGCGAGGAGTTTCC 59.781 63.158 0.00 0.00 36.58 3.13
1656 3399 1.448717 GCAGAGGGCGAGGAGTTTC 60.449 63.158 0.00 0.00 0.00 2.78
1657 3400 2.665603 GCAGAGGGCGAGGAGTTT 59.334 61.111 0.00 0.00 0.00 2.66
1669 3412 4.379243 AAGACGGGGCGTGCAGAG 62.379 66.667 0.00 0.00 41.37 3.35
1670 3413 4.373116 GAAGACGGGGCGTGCAGA 62.373 66.667 0.00 0.00 41.37 4.26
1674 3417 3.234630 TTGAGGAAGACGGGGCGTG 62.235 63.158 0.00 0.00 41.37 5.34
1675 3418 2.920912 TTGAGGAAGACGGGGCGT 60.921 61.111 0.00 0.00 45.10 5.68
1676 3419 2.434359 GTTGAGGAAGACGGGGCG 60.434 66.667 0.00 0.00 0.00 6.13
1677 3420 2.046217 GGTTGAGGAAGACGGGGC 60.046 66.667 0.00 0.00 0.00 5.80
1678 3421 2.264794 CGGTTGAGGAAGACGGGG 59.735 66.667 0.00 0.00 0.00 5.73
1679 3422 1.601419 TAGCGGTTGAGGAAGACGGG 61.601 60.000 0.00 0.00 0.00 5.28
1680 3423 0.458025 GTAGCGGTTGAGGAAGACGG 60.458 60.000 0.00 0.00 0.00 4.79
1681 3424 0.242825 TGTAGCGGTTGAGGAAGACG 59.757 55.000 0.00 0.00 0.00 4.18
1682 3425 1.404315 CCTGTAGCGGTTGAGGAAGAC 60.404 57.143 5.85 0.00 0.00 3.01
1683 3426 0.895530 CCTGTAGCGGTTGAGGAAGA 59.104 55.000 5.85 0.00 0.00 2.87
1684 3427 0.741221 GCCTGTAGCGGTTGAGGAAG 60.741 60.000 14.09 0.00 0.00 3.46
1685 3428 1.295423 GCCTGTAGCGGTTGAGGAA 59.705 57.895 14.09 0.00 0.00 3.36
1686 3429 2.978824 GCCTGTAGCGGTTGAGGA 59.021 61.111 14.09 0.00 0.00 3.71
1704 3447 4.796495 AAAGGATGGGTCGCCGCC 62.796 66.667 0.00 0.00 0.00 6.13
1705 3448 3.508840 CAAAGGATGGGTCGCCGC 61.509 66.667 0.00 0.00 0.00 6.53
1706 3449 3.508840 GCAAAGGATGGGTCGCCG 61.509 66.667 0.00 0.00 0.00 6.46
1707 3450 3.140814 GGCAAAGGATGGGTCGCC 61.141 66.667 0.00 0.00 0.00 5.54
1708 3451 3.140814 GGGCAAAGGATGGGTCGC 61.141 66.667 0.00 0.00 0.00 5.19
1709 3452 2.440247 GGGGCAAAGGATGGGTCG 60.440 66.667 0.00 0.00 0.00 4.79
1710 3453 1.286305 TAGGGGGCAAAGGATGGGTC 61.286 60.000 0.00 0.00 0.00 4.46
1711 3454 1.230482 TAGGGGGCAAAGGATGGGT 60.230 57.895 0.00 0.00 0.00 4.51
1712 3455 1.230212 GTAGGGGGCAAAGGATGGG 59.770 63.158 0.00 0.00 0.00 4.00
1713 3456 1.230212 GGTAGGGGGCAAAGGATGG 59.770 63.158 0.00 0.00 0.00 3.51
1714 3457 0.183731 GAGGTAGGGGGCAAAGGATG 59.816 60.000 0.00 0.00 0.00 3.51
1715 3458 0.994050 GGAGGTAGGGGGCAAAGGAT 60.994 60.000 0.00 0.00 0.00 3.24
1716 3459 1.618447 GGAGGTAGGGGGCAAAGGA 60.618 63.158 0.00 0.00 0.00 3.36
1717 3460 3.007542 GGAGGTAGGGGGCAAAGG 58.992 66.667 0.00 0.00 0.00 3.11
1718 3461 2.590092 CGGAGGTAGGGGGCAAAG 59.410 66.667 0.00 0.00 0.00 2.77
1719 3462 3.723922 GCGGAGGTAGGGGGCAAA 61.724 66.667 0.00 0.00 0.00 3.68
1726 3469 3.905678 CTCGCTGGCGGAGGTAGG 61.906 72.222 14.94 0.00 40.25 3.18
1727 3470 2.136196 GATCTCGCTGGCGGAGGTAG 62.136 65.000 14.94 4.86 40.25 3.18
1728 3471 2.123854 ATCTCGCTGGCGGAGGTA 60.124 61.111 14.94 0.00 40.25 3.08
1729 3472 3.532155 GATCTCGCTGGCGGAGGT 61.532 66.667 14.94 7.41 40.25 3.85
1730 3473 4.637489 CGATCTCGCTGGCGGAGG 62.637 72.222 14.94 6.23 40.25 4.30
1740 3483 2.415010 CAGGGACCAGCGATCTCG 59.585 66.667 0.00 0.00 43.27 4.04
1741 3484 2.107953 GCAGGGACCAGCGATCTC 59.892 66.667 0.00 0.00 0.00 2.75
1742 3485 3.474570 GGCAGGGACCAGCGATCT 61.475 66.667 0.00 0.00 0.00 2.75
1743 3486 3.453070 GAGGCAGGGACCAGCGATC 62.453 68.421 0.00 0.00 0.00 3.69
1744 3487 3.474570 GAGGCAGGGACCAGCGAT 61.475 66.667 0.00 0.00 0.00 4.58
1747 3490 3.791586 GAGGAGGCAGGGACCAGC 61.792 72.222 0.00 0.00 0.00 4.85
1748 3491 3.086600 GGAGGAGGCAGGGACCAG 61.087 72.222 0.00 0.00 0.00 4.00
1751 3494 3.462678 GACGGAGGAGGCAGGGAC 61.463 72.222 0.00 0.00 0.00 4.46
1752 3495 4.779733 GGACGGAGGAGGCAGGGA 62.780 72.222 0.00 0.00 0.00 4.20
1807 3550 2.386661 ACTACTCACCAATGGCGAAG 57.613 50.000 0.00 0.00 0.00 3.79
1808 3551 2.851263 AACTACTCACCAATGGCGAA 57.149 45.000 0.00 0.00 0.00 4.70
1809 3552 3.093814 TCTAACTACTCACCAATGGCGA 58.906 45.455 0.00 0.00 0.00 5.54
1810 3553 3.448686 CTCTAACTACTCACCAATGGCG 58.551 50.000 0.00 0.00 0.00 5.69
1811 3554 3.118592 AGCTCTAACTACTCACCAATGGC 60.119 47.826 0.00 0.00 0.00 4.40
1812 3555 4.437239 CAGCTCTAACTACTCACCAATGG 58.563 47.826 0.00 0.00 0.00 3.16
1813 3556 4.160439 TCCAGCTCTAACTACTCACCAATG 59.840 45.833 0.00 0.00 0.00 2.82
1814 3557 4.160626 GTCCAGCTCTAACTACTCACCAAT 59.839 45.833 0.00 0.00 0.00 3.16
1815 3558 3.510360 GTCCAGCTCTAACTACTCACCAA 59.490 47.826 0.00 0.00 0.00 3.67
1816 3559 3.090037 GTCCAGCTCTAACTACTCACCA 58.910 50.000 0.00 0.00 0.00 4.17
1817 3560 3.358118 AGTCCAGCTCTAACTACTCACC 58.642 50.000 0.00 0.00 0.00 4.02
1818 3561 4.577283 CCTAGTCCAGCTCTAACTACTCAC 59.423 50.000 0.00 0.00 0.00 3.51
1819 3562 4.227754 ACCTAGTCCAGCTCTAACTACTCA 59.772 45.833 0.00 0.00 0.00 3.41
1820 3563 4.784177 ACCTAGTCCAGCTCTAACTACTC 58.216 47.826 0.00 0.00 0.00 2.59
1821 3564 4.866327 ACCTAGTCCAGCTCTAACTACT 57.134 45.455 0.00 0.00 0.00 2.57
1822 3565 5.918426 AAACCTAGTCCAGCTCTAACTAC 57.082 43.478 0.00 0.00 0.00 2.73
1823 3566 6.930068 AAAAACCTAGTCCAGCTCTAACTA 57.070 37.500 0.00 0.00 0.00 2.24
1824 3567 5.827326 AAAAACCTAGTCCAGCTCTAACT 57.173 39.130 0.00 0.00 0.00 2.24
1843 3586 1.243902 GATGTGACGCCCCTGAAAAA 58.756 50.000 0.00 0.00 0.00 1.94
1844 3587 0.953471 CGATGTGACGCCCCTGAAAA 60.953 55.000 0.00 0.00 0.00 2.29
1845 3588 1.375396 CGATGTGACGCCCCTGAAA 60.375 57.895 0.00 0.00 0.00 2.69
1846 3589 2.264480 CGATGTGACGCCCCTGAA 59.736 61.111 0.00 0.00 0.00 3.02
1847 3590 3.770040 CCGATGTGACGCCCCTGA 61.770 66.667 0.00 0.00 0.00 3.86
1848 3591 4.082523 ACCGATGTGACGCCCCTG 62.083 66.667 0.00 0.00 0.00 4.45
1849 3592 4.082523 CACCGATGTGACGCCCCT 62.083 66.667 0.00 0.00 45.76 4.79
1863 3606 4.832608 GATGTCGTCCCCGCCACC 62.833 72.222 0.00 0.00 0.00 4.61
1875 3618 1.129326 CCTTATTCCGACGCGATGTC 58.871 55.000 15.93 0.00 44.53 3.06
1876 3619 0.458669 ACCTTATTCCGACGCGATGT 59.541 50.000 15.93 0.00 0.00 3.06
1877 3620 0.852777 CACCTTATTCCGACGCGATG 59.147 55.000 15.93 3.82 0.00 3.84
1878 3621 0.874607 GCACCTTATTCCGACGCGAT 60.875 55.000 15.93 0.00 0.00 4.58
1879 3622 1.517694 GCACCTTATTCCGACGCGA 60.518 57.895 15.93 0.00 0.00 5.87
1880 3623 2.522638 GGCACCTTATTCCGACGCG 61.523 63.158 3.53 3.53 0.00 6.01
1881 3624 1.152383 GAGGCACCTTATTCCGACGC 61.152 60.000 0.00 0.00 0.00 5.19
1882 3625 0.460311 AGAGGCACCTTATTCCGACG 59.540 55.000 0.00 0.00 0.00 5.12
1883 3626 1.941325 CAGAGGCACCTTATTCCGAC 58.059 55.000 0.00 0.00 0.00 4.79
1884 3627 0.178068 GCAGAGGCACCTTATTCCGA 59.822 55.000 0.00 0.00 40.72 4.55
1885 3628 0.179000 AGCAGAGGCACCTTATTCCG 59.821 55.000 0.00 0.00 44.61 4.30
1886 3629 2.092699 AGAAGCAGAGGCACCTTATTCC 60.093 50.000 0.00 0.00 44.61 3.01
1887 3630 3.202097 GAGAAGCAGAGGCACCTTATTC 58.798 50.000 0.00 0.00 44.61 1.75
1888 3631 2.092699 GGAGAAGCAGAGGCACCTTATT 60.093 50.000 0.00 0.00 44.61 1.40
1889 3632 1.488393 GGAGAAGCAGAGGCACCTTAT 59.512 52.381 0.00 0.00 44.61 1.73
1890 3633 0.905357 GGAGAAGCAGAGGCACCTTA 59.095 55.000 0.00 0.00 44.61 2.69
1891 3634 1.682257 GGAGAAGCAGAGGCACCTT 59.318 57.895 0.00 0.00 44.61 3.50
1892 3635 2.297129 GGGAGAAGCAGAGGCACCT 61.297 63.158 0.00 0.00 44.61 4.00
1893 3636 2.270527 GGGAGAAGCAGAGGCACC 59.729 66.667 0.00 0.00 44.61 5.01
1894 3637 2.270527 GGGGAGAAGCAGAGGCAC 59.729 66.667 0.00 0.00 44.61 5.01
1895 3638 3.011517 GGGGGAGAAGCAGAGGCA 61.012 66.667 0.00 0.00 44.61 4.75
1896 3639 2.336484 GATGGGGGAGAAGCAGAGGC 62.336 65.000 0.00 0.00 41.61 4.70
1897 3640 0.693767 AGATGGGGGAGAAGCAGAGG 60.694 60.000 0.00 0.00 0.00 3.69
1898 3641 1.134159 CAAGATGGGGGAGAAGCAGAG 60.134 57.143 0.00 0.00 0.00 3.35
1899 3642 0.914644 CAAGATGGGGGAGAAGCAGA 59.085 55.000 0.00 0.00 0.00 4.26
1900 3643 0.106819 CCAAGATGGGGGAGAAGCAG 60.107 60.000 0.00 0.00 32.67 4.24
1901 3644 2.001803 CCAAGATGGGGGAGAAGCA 58.998 57.895 0.00 0.00 32.67 3.91
1902 3645 1.454663 GCCAAGATGGGGGAGAAGC 60.455 63.158 0.00 0.00 38.19 3.86
1903 3646 1.153086 CGCCAAGATGGGGGAGAAG 60.153 63.158 5.60 0.00 45.66 2.85
1904 3647 2.998097 CGCCAAGATGGGGGAGAA 59.002 61.111 5.60 0.00 45.66 2.87
1910 3653 2.825836 GAGCACCGCCAAGATGGG 60.826 66.667 0.00 0.00 38.19 4.00
1911 3654 2.110967 CAGAGCACCGCCAAGATGG 61.111 63.158 0.00 0.00 41.55 3.51
1912 3655 0.674581 TTCAGAGCACCGCCAAGATG 60.675 55.000 0.00 0.00 0.00 2.90
1913 3656 0.674895 GTTCAGAGCACCGCCAAGAT 60.675 55.000 0.00 0.00 0.00 2.40
1914 3657 1.301716 GTTCAGAGCACCGCCAAGA 60.302 57.895 0.00 0.00 0.00 3.02
1915 3658 2.671177 CGTTCAGAGCACCGCCAAG 61.671 63.158 0.00 0.00 0.00 3.61
1916 3659 2.664851 CGTTCAGAGCACCGCCAA 60.665 61.111 0.00 0.00 0.00 4.52
1917 3660 4.680237 CCGTTCAGAGCACCGCCA 62.680 66.667 0.00 0.00 0.00 5.69
1920 3663 4.717629 TCGCCGTTCAGAGCACCG 62.718 66.667 0.00 0.00 0.00 4.94
1921 3664 3.112709 GTCGCCGTTCAGAGCACC 61.113 66.667 0.00 0.00 0.00 5.01
1922 3665 3.470567 CGTCGCCGTTCAGAGCAC 61.471 66.667 0.00 0.00 0.00 4.40
1934 3677 3.869272 CCTGCTTCATGGCGTCGC 61.869 66.667 9.22 9.22 34.52 5.19
1935 3678 2.434884 ACCTGCTTCATGGCGTCG 60.435 61.111 0.00 0.00 34.52 5.12
1936 3679 2.401766 CCACCTGCTTCATGGCGTC 61.402 63.158 0.00 0.00 34.52 5.19
1937 3680 2.360350 CCACCTGCTTCATGGCGT 60.360 61.111 0.00 0.00 34.52 5.68
1947 3690 2.360475 GAGGACCAAGCCACCTGC 60.360 66.667 0.00 0.00 41.71 4.85
1948 3691 1.298014 GAGAGGACCAAGCCACCTG 59.702 63.158 0.00 0.00 33.89 4.00
1949 3692 2.286523 CGAGAGGACCAAGCCACCT 61.287 63.158 0.00 0.00 36.68 4.00
1950 3693 2.266055 CGAGAGGACCAAGCCACC 59.734 66.667 0.00 0.00 0.00 4.61
1951 3694 2.435059 GCGAGAGGACCAAGCCAC 60.435 66.667 0.00 0.00 0.00 5.01
1952 3695 3.706373 GGCGAGAGGACCAAGCCA 61.706 66.667 12.67 0.00 46.48 4.75
1953 3696 4.821589 CGGCGAGAGGACCAAGCC 62.822 72.222 0.00 8.83 44.00 4.35
1954 3697 3.591254 AACGGCGAGAGGACCAAGC 62.591 63.158 16.62 0.00 0.00 4.01
1955 3698 1.446272 GAACGGCGAGAGGACCAAG 60.446 63.158 16.62 0.00 0.00 3.61
1956 3699 1.469335 AAGAACGGCGAGAGGACCAA 61.469 55.000 16.62 0.00 0.00 3.67
1957 3700 1.469335 AAAGAACGGCGAGAGGACCA 61.469 55.000 16.62 0.00 0.00 4.02
1958 3701 0.736672 GAAAGAACGGCGAGAGGACC 60.737 60.000 16.62 0.00 0.00 4.46
1959 3702 1.071567 CGAAAGAACGGCGAGAGGAC 61.072 60.000 16.62 0.00 0.00 3.85
1960 3703 1.211969 CGAAAGAACGGCGAGAGGA 59.788 57.895 16.62 0.00 0.00 3.71
1961 3704 1.211969 TCGAAAGAACGGCGAGAGG 59.788 57.895 16.62 0.00 37.03 3.69
1962 3705 4.861883 TCGAAAGAACGGCGAGAG 57.138 55.556 16.62 0.00 37.03 3.20
1973 3716 7.038659 AGAAACTAATCTCACCAGATCGAAAG 58.961 38.462 0.00 0.00 38.55 2.62
1974 3717 6.936279 AGAAACTAATCTCACCAGATCGAAA 58.064 36.000 0.00 0.00 38.55 3.46
1975 3718 6.531503 AGAAACTAATCTCACCAGATCGAA 57.468 37.500 0.00 0.00 38.55 3.71
1976 3719 5.220873 CGAGAAACTAATCTCACCAGATCGA 60.221 44.000 5.29 0.00 44.98 3.59
1977 3720 4.973051 CGAGAAACTAATCTCACCAGATCG 59.027 45.833 5.29 0.00 44.98 3.69
1978 3721 6.137794 TCGAGAAACTAATCTCACCAGATC 57.862 41.667 5.29 0.00 44.98 2.75
1979 3722 6.097554 ACATCGAGAAACTAATCTCACCAGAT 59.902 38.462 5.29 0.00 44.98 2.90
1980 3723 5.419155 ACATCGAGAAACTAATCTCACCAGA 59.581 40.000 5.29 0.00 44.98 3.86
1981 3724 5.518128 CACATCGAGAAACTAATCTCACCAG 59.482 44.000 5.29 0.00 44.98 4.00
1982 3725 5.047306 ACACATCGAGAAACTAATCTCACCA 60.047 40.000 5.29 0.00 44.98 4.17
1983 3726 5.411781 ACACATCGAGAAACTAATCTCACC 58.588 41.667 5.29 0.00 44.98 4.02
1984 3727 6.809196 AGAACACATCGAGAAACTAATCTCAC 59.191 38.462 5.29 0.00 44.98 3.51
1985 3728 6.808704 CAGAACACATCGAGAAACTAATCTCA 59.191 38.462 5.29 0.00 44.98 3.27
1986 3729 6.254589 CCAGAACACATCGAGAAACTAATCTC 59.745 42.308 0.00 0.00 41.99 2.75
1987 3730 6.102663 CCAGAACACATCGAGAAACTAATCT 58.897 40.000 0.00 0.00 0.00 2.40
1988 3731 5.220491 GCCAGAACACATCGAGAAACTAATC 60.220 44.000 0.00 0.00 0.00 1.75
1989 3732 4.631813 GCCAGAACACATCGAGAAACTAAT 59.368 41.667 0.00 0.00 0.00 1.73
1990 3733 3.994392 GCCAGAACACATCGAGAAACTAA 59.006 43.478 0.00 0.00 0.00 2.24
1991 3734 3.585862 GCCAGAACACATCGAGAAACTA 58.414 45.455 0.00 0.00 0.00 2.24
1992 3735 2.417719 GCCAGAACACATCGAGAAACT 58.582 47.619 0.00 0.00 0.00 2.66
1993 3736 1.126846 CGCCAGAACACATCGAGAAAC 59.873 52.381 0.00 0.00 0.00 2.78
1994 3737 1.428448 CGCCAGAACACATCGAGAAA 58.572 50.000 0.00 0.00 0.00 2.52
1995 3738 0.389817 CCGCCAGAACACATCGAGAA 60.390 55.000 0.00 0.00 0.00 2.87
1996 3739 1.215382 CCGCCAGAACACATCGAGA 59.785 57.895 0.00 0.00 0.00 4.04
1997 3740 0.670546 AACCGCCAGAACACATCGAG 60.671 55.000 0.00 0.00 0.00 4.04
1998 3741 0.948623 CAACCGCCAGAACACATCGA 60.949 55.000 0.00 0.00 0.00 3.59
1999 3742 1.227999 ACAACCGCCAGAACACATCG 61.228 55.000 0.00 0.00 0.00 3.84
2000 3743 0.517316 GACAACCGCCAGAACACATC 59.483 55.000 0.00 0.00 0.00 3.06
2001 3744 1.227999 CGACAACCGCCAGAACACAT 61.228 55.000 0.00 0.00 0.00 3.21
2002 3745 1.885388 CGACAACCGCCAGAACACA 60.885 57.895 0.00 0.00 0.00 3.72
2003 3746 2.604174 CCGACAACCGCCAGAACAC 61.604 63.158 0.00 0.00 36.84 3.32
2004 3747 2.280524 CCGACAACCGCCAGAACA 60.281 61.111 0.00 0.00 36.84 3.18
2005 3748 2.280592 ACCGACAACCGCCAGAAC 60.281 61.111 0.00 0.00 36.84 3.01
2006 3749 2.029964 GACCGACAACCGCCAGAA 59.970 61.111 0.00 0.00 36.84 3.02
2007 3750 4.351938 CGACCGACAACCGCCAGA 62.352 66.667 0.00 0.00 36.84 3.86
2046 3789 3.081311 TTCCAGAGCATCCGCCTCG 62.081 63.158 0.00 0.00 39.83 4.63
2047 3790 1.522580 GTTCCAGAGCATCCGCCTC 60.523 63.158 0.00 0.00 39.83 4.70
2048 3791 2.586792 GTTCCAGAGCATCCGCCT 59.413 61.111 0.00 0.00 39.83 5.52
2049 3792 2.892425 CGTTCCAGAGCATCCGCC 60.892 66.667 0.00 0.00 39.83 6.13
2050 3793 1.880340 CTCGTTCCAGAGCATCCGC 60.880 63.158 0.00 0.00 33.66 5.54
2051 3794 1.227089 CCTCGTTCCAGAGCATCCG 60.227 63.158 0.00 0.00 36.95 4.18
2052 3795 0.103937 CTCCTCGTTCCAGAGCATCC 59.896 60.000 0.00 0.00 36.95 3.51
2053 3796 0.103937 CCTCCTCGTTCCAGAGCATC 59.896 60.000 0.00 0.00 36.95 3.91
2054 3797 0.616111 ACCTCCTCGTTCCAGAGCAT 60.616 55.000 0.00 0.00 36.95 3.79
2055 3798 0.832135 AACCTCCTCGTTCCAGAGCA 60.832 55.000 0.00 0.00 36.95 4.26
2056 3799 0.390472 CAACCTCCTCGTTCCAGAGC 60.390 60.000 0.00 0.00 36.95 4.09
2057 3800 0.247736 CCAACCTCCTCGTTCCAGAG 59.752 60.000 0.00 0.00 37.97 3.35
2058 3801 1.827399 GCCAACCTCCTCGTTCCAGA 61.827 60.000 0.00 0.00 0.00 3.86
2059 3802 1.376037 GCCAACCTCCTCGTTCCAG 60.376 63.158 0.00 0.00 0.00 3.86
2060 3803 1.827399 GAGCCAACCTCCTCGTTCCA 61.827 60.000 0.00 0.00 34.35 3.53
2061 3804 1.079057 GAGCCAACCTCCTCGTTCC 60.079 63.158 0.00 0.00 34.35 3.62
2062 3805 1.446272 CGAGCCAACCTCCTCGTTC 60.446 63.158 2.20 0.00 44.25 3.95
2063 3806 2.657237 CGAGCCAACCTCCTCGTT 59.343 61.111 2.20 0.00 44.25 3.85
2066 3809 1.144936 CCATCGAGCCAACCTCCTC 59.855 63.158 0.00 0.00 37.27 3.71
2067 3810 1.613630 ACCATCGAGCCAACCTCCT 60.614 57.895 0.00 0.00 37.27 3.69
2068 3811 1.450312 CACCATCGAGCCAACCTCC 60.450 63.158 0.00 0.00 37.27 4.30
2069 3812 1.450312 CCACCATCGAGCCAACCTC 60.450 63.158 0.00 0.00 37.22 3.85
2070 3813 2.224159 ACCACCATCGAGCCAACCT 61.224 57.895 0.00 0.00 0.00 3.50
2071 3814 2.040544 CACCACCATCGAGCCAACC 61.041 63.158 0.00 0.00 0.00 3.77
2072 3815 2.040544 CCACCACCATCGAGCCAAC 61.041 63.158 0.00 0.00 0.00 3.77
2073 3816 1.561769 ATCCACCACCATCGAGCCAA 61.562 55.000 0.00 0.00 0.00 4.52
2074 3817 1.971505 GATCCACCACCATCGAGCCA 61.972 60.000 0.00 0.00 0.00 4.75
2075 3818 1.227674 GATCCACCACCATCGAGCC 60.228 63.158 0.00 0.00 0.00 4.70
2076 3819 1.040646 TAGATCCACCACCATCGAGC 58.959 55.000 0.00 0.00 0.00 5.03
2077 3820 2.095008 CGATAGATCCACCACCATCGAG 60.095 54.545 0.00 0.00 37.95 4.04
2078 3821 1.886542 CGATAGATCCACCACCATCGA 59.113 52.381 0.00 0.00 37.95 3.59
2079 3822 1.613925 ACGATAGATCCACCACCATCG 59.386 52.381 0.00 0.00 40.68 3.84
2080 3823 2.351835 CGACGATAGATCCACCACCATC 60.352 54.545 0.00 0.00 41.38 3.51
2081 3824 1.613925 CGACGATAGATCCACCACCAT 59.386 52.381 0.00 0.00 41.38 3.55
2082 3825 1.029681 CGACGATAGATCCACCACCA 58.970 55.000 0.00 0.00 41.38 4.17
2083 3826 1.030457 ACGACGATAGATCCACCACC 58.970 55.000 0.00 0.00 41.38 4.61
2084 3827 2.225963 CCTACGACGATAGATCCACCAC 59.774 54.545 0.00 0.00 41.38 4.16
2085 3828 2.501261 CCTACGACGATAGATCCACCA 58.499 52.381 0.00 0.00 41.38 4.17
2086 3829 1.811359 CCCTACGACGATAGATCCACC 59.189 57.143 0.00 0.00 41.38 4.61
2087 3830 1.199558 GCCCTACGACGATAGATCCAC 59.800 57.143 0.00 0.00 41.38 4.02
2088 3831 1.073444 AGCCCTACGACGATAGATCCA 59.927 52.381 0.00 0.00 41.38 3.41
2089 3832 1.823797 AGCCCTACGACGATAGATCC 58.176 55.000 0.00 0.00 41.38 3.36
2090 3833 3.566523 CAAAGCCCTACGACGATAGATC 58.433 50.000 0.00 0.00 41.38 2.75
2091 3834 2.296471 CCAAAGCCCTACGACGATAGAT 59.704 50.000 0.00 0.00 41.38 1.98
2092 3835 1.679680 CCAAAGCCCTACGACGATAGA 59.320 52.381 0.00 0.00 41.38 1.98
2093 3836 1.407979 ACCAAAGCCCTACGACGATAG 59.592 52.381 0.00 0.00 46.19 2.08
2094 3837 1.477553 ACCAAAGCCCTACGACGATA 58.522 50.000 0.00 0.00 0.00 2.92
2095 3838 0.611714 AACCAAAGCCCTACGACGAT 59.388 50.000 0.00 0.00 0.00 3.73
2096 3839 0.320073 CAACCAAAGCCCTACGACGA 60.320 55.000 0.00 0.00 0.00 4.20
2097 3840 1.296056 CCAACCAAAGCCCTACGACG 61.296 60.000 0.00 0.00 0.00 5.12
2098 3841 0.958876 CCCAACCAAAGCCCTACGAC 60.959 60.000 0.00 0.00 0.00 4.34
2099 3842 1.377229 CCCAACCAAAGCCCTACGA 59.623 57.895 0.00 0.00 0.00 3.43
2100 3843 1.677633 CCCCAACCAAAGCCCTACG 60.678 63.158 0.00 0.00 0.00 3.51
2101 3844 1.982395 GCCCCAACCAAAGCCCTAC 60.982 63.158 0.00 0.00 0.00 3.18
2102 3845 2.443324 GCCCCAACCAAAGCCCTA 59.557 61.111 0.00 0.00 0.00 3.53
2127 3870 3.294214 GACAGAACCGGGACTAATAGGA 58.706 50.000 6.32 0.00 0.00 2.94
2130 3873 2.424601 CGTGACAGAACCGGGACTAATA 59.575 50.000 6.32 0.00 0.00 0.98
2263 4007 3.873781 GACCATTGGTCCCGATTCA 57.126 52.632 23.00 0.00 46.19 2.57
2297 4052 1.005805 CCAATGGATGTGGGTCAGGAA 59.994 52.381 0.00 0.00 32.03 3.36
2303 4058 0.323360 CGGAACCAATGGATGTGGGT 60.323 55.000 6.16 0.00 39.40 4.51
2481 4243 2.466846 TGTGCATAGGAGGTGAGCTAA 58.533 47.619 0.00 0.00 0.00 3.09
2523 4285 6.407074 GGAGAAAGCTTAACTAGTATGGCTCA 60.407 42.308 14.01 0.00 0.00 4.26
2530 4292 4.643784 CGGGAGGAGAAAGCTTAACTAGTA 59.356 45.833 0.00 0.00 0.00 1.82
2551 4313 3.132139 TCGGAGGTCGAGCTTCGG 61.132 66.667 37.01 22.43 43.74 4.30
2866 4652 2.041701 ACCATTCTGCTTGTTTGGCTT 58.958 42.857 0.00 0.00 0.00 4.35
2869 4655 5.990996 ACATAAAACCATTCTGCTTGTTTGG 59.009 36.000 0.00 0.00 31.73 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.