AutoCloner

Multiple sequence alignment - TraesCS3D01G055500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G055500	chr3D	100.000	3437	0	0	1	3437	23064555	23061119	0.000000e+00	6348.0
1	TraesCS3D01G055500	chr3D	89.300	243	25	1	22	263	23174410	23174168	1.550000e-78	303.0
2	TraesCS3D01G055500	chr3B	94.127	1958	84	14	739	2685	40245846	40243909	0.000000e+00	2950.0
3	TraesCS3D01G055500	chr3B	93.657	741	37	5	5	742	40246623	40245890	0.000000e+00	1099.0
4	TraesCS3D01G055500	chr3B	88.451	381	39	3	3057	3437	40239486	40239111	4.040000e-124	455.0
5	TraesCS3D01G055500	chr3B	91.096	292	23	3	2685	2975	40239912	40239623	3.220000e-105	392.0
6	TraesCS3D01G055500	chr3B	91.176	238	20	1	27	263	40866662	40866425	4.280000e-84	322.0
7	TraesCS3D01G055500	chr3A	94.892	1253	60	3	739	1990	32152055	32150806	0.000000e+00	1956.0
8	TraesCS3D01G055500	chr3A	95.023	663	29	4	2106	2768	32150592	32149934	0.000000e+00	1038.0
9	TraesCS3D01G055500	chr3A	90.579	743	45	10	1	742	32152817	32152099	0.000000e+00	961.0
10	TraesCS3D01G055500	chr3A	88.477	243	27	1	22	263	32252865	32252623	3.350000e-75	292.0
11	TraesCS3D01G055500	chr3A	87.600	250	23	3	22	263	731226994	731226745	2.020000e-72	283.0
12	TraesCS3D01G055500	chr3A	80.000	100	19	1	3094	3193	323438615	323438517	4.760000e-09	73.1
13	TraesCS3D01G055500	chr3A	80.851	94	14	2	3061	3150	32149664	32149571	1.710000e-08	71.3
14	TraesCS3D01G055500	chr3A	100.000	30	0	0	3213	3242	28570732	28570761	4.790000e-04	56.5
15	TraesCS3D01G055500	chr3A	100.000	30	0	0	3213	3242	94194107	94194078	4.790000e-04	56.5
16	TraesCS3D01G055500	chr1D	98.991	694	7	0	1	694	225396846	225397539	0.000000e+00	1243.0
17	TraesCS3D01G055500	chr2D	84.380	589	70	17	996	1577	419040492	419041065	3.000000e-155	558.0
18	TraesCS3D01G055500	chr2D	86.620	142	19	0	1702	1843	419041199	419041340	1.280000e-34	158.0
19	TraesCS3D01G055500	chr2A	83.816	587	77	13	996	1577	570785191	570784618	3.020000e-150	542.0
20	TraesCS3D01G055500	chr2A	86.620	142	19	0	1702	1843	570784484	570784343	1.280000e-34	158.0
21	TraesCS3D01G055500	chr2A	100.000	30	0	0	3213	3242	119302492	119302463	4.790000e-04	56.5
22	TraesCS3D01G055500	chr2B	83.503	588	76	17	996	1577	491181324	491181896	2.350000e-146	529.0
23	TraesCS3D01G055500	chr2B	85.211	142	21	0	1702	1843	491182031	491182172	2.760000e-31	147.0
24	TraesCS3D01G055500	chr2B	100.000	30	0	0	3213	3242	168778334	168778305	4.790000e-04	56.5
25	TraesCS3D01G055500	chr4A	83.756	394	62	2	1023	1415	580908038	580907646	4.190000e-99	372.0
26	TraesCS3D01G055500	chr1B	84.466	103	12	3	3093	3193	642794346	642794446	7.850000e-17	99.0
27	TraesCS3D01G055500	chr7B	85.393	89	13	0	3105	3193	380859495	380859407	3.650000e-15	93.5
28	TraesCS3D01G055500	chr6A	100.000	30	0	0	3212	3241	597848486	597848457	4.790000e-04	56.5
29	TraesCS3D01G055500	chr4D	94.595	37	1	1	3213	3249	41217650	41217685	4.790000e-04	56.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G055500	chr3D	23061119	23064555	3436	True	6348.000	6348	100.00000	1	3437	1	chr3D.!!$R1	3436
1	TraesCS3D01G055500	chr3B	40239111	40246623	7512	True	1224.000	2950	91.83275	5	3437	4	chr3B.!!$R2	3432
2	TraesCS3D01G055500	chr3A	32149571	32152817	3246	True	1006.575	1956	90.33625	1	3150	4	chr3A.!!$R5	3149
3	TraesCS3D01G055500	chr1D	225396846	225397539	693	False	1243.000	1243	98.99100	1	694	1	chr1D.!!$F1	693
4	TraesCS3D01G055500	chr2D	419040492	419041340	848	False	358.000	558	85.50000	996	1843	2	chr2D.!!$F1	847
5	TraesCS3D01G055500	chr2A	570784343	570785191	848	True	350.000	542	85.21800	996	1843	2	chr2A.!!$R2	847
6	TraesCS3D01G055500	chr2B	491181324	491182172	848	False	338.000	529	84.35700	996	1843	2	chr2B.!!$F1	847

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
734	738	2.903135	TGCCATACCCATGTCATATCGA	59.097	45.455	0.0	0.0	0.0	3.59	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2580	2805	0.464373	ATAACCAGTGCAGCCCGATG	60.464	55.0	0.0	0.0	0.0	3.84	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
699	703	6.405397	GGTTGTTGGTTTAGTTGAAGTGTCAT	60.405	38.462	0.00	0.00	32.48	3.06
729	733	3.827505	GGTGCCATACCCATGTCAT	57.172	52.632	0.00	0.00	44.15	3.06
730	734	2.949177	GGTGCCATACCCATGTCATA	57.051	50.000	0.00	0.00	44.15	2.15
731	735	3.439857	GGTGCCATACCCATGTCATAT	57.560	47.619	0.00	0.00	44.15	1.78
732	736	3.347216	GGTGCCATACCCATGTCATATC	58.653	50.000	0.00	0.00	44.15	1.63
734	738	2.903135	TGCCATACCCATGTCATATCGA	59.097	45.455	0.00	0.00	0.00	3.59
736	740	4.019411	TGCCATACCCATGTCATATCGAAT	60.019	41.667	0.00	0.00	0.00	3.34
737	741	4.572389	GCCATACCCATGTCATATCGAATC	59.428	45.833	0.00	0.00	0.00	2.52
894	946	4.952335	ACAATGGCTAGATTTAAGCTTGCT	59.048	37.500	15.03	3.82	39.97	3.91
919	971	7.881643	TGTGGTTGTTGTAATAATGAAATGC	57.118	32.000	0.00	0.00	0.00	3.56
986	1038	3.118038	ACCTTTGGTGACTGTTAGAAGCA	60.118	43.478	0.00	0.00	32.98	3.91
1158	1210	0.103208	AGGAGCGCAACCTTCTATCG	59.897	55.000	18.15	0.00	33.55	2.92
1440	1492	3.567478	AATGTCCAGCATAGAGTTCCC	57.433	47.619	0.00	0.00	36.67	3.97
1441	1493	1.951209	TGTCCAGCATAGAGTTCCCA	58.049	50.000	0.00	0.00	0.00	4.37
1455	1507	2.362077	AGTTCCCACATGTTTGCTTCAC	59.638	45.455	0.00	0.00	0.00	3.18
1624	1681	4.518970	GTCCTAACATTGAGCTTTGTTGGA	59.481	41.667	17.29	16.71	36.70	3.53
1635	1692	3.826157	AGCTTTGTTGGAAATGAATCCGA	59.174	39.130	0.00	0.00	42.76	4.55
1869	1988	2.464157	AACCAGCTGAGCTTGTCTAC	57.536	50.000	17.39	0.00	36.40	2.59
1871	1990	1.274728	ACCAGCTGAGCTTGTCTACTG	59.725	52.381	17.39	0.00	36.40	2.74
1932	2051	6.258287	GTGGATCTGAGATGATTCAAAGTCAG	59.742	42.308	0.00	13.33	34.11	3.51
1970	2089	9.447040	CTGATATTTGTGCTTGATAATTGTGAG	57.553	33.333	0.00	0.00	0.00	3.51
2017	2174	5.012768	AGCTAACAAGGTACCAGTGTTATGT	59.987	40.000	28.01	19.96	37.17	2.29
2022	2179	5.993441	ACAAGGTACCAGTGTTATGTGTTAC	59.007	40.000	15.94	0.00	0.00	2.50
2067	2224	4.338118	GGATGTTGTTGAACCTGAAAGACA	59.662	41.667	0.00	0.00	34.07	3.41
2160	2384	1.143305	CCTCACTCTTGTGTTGCTCG	58.857	55.000	0.00	0.00	44.14	5.03
2214	2438	0.393808	ACTCTCTGAGCGAGGAGTCC	60.394	60.000	0.00	0.00	40.30	3.85
2333	2557	3.450457	CACCTGCTTCCTATCTTCTCACT	59.550	47.826	0.00	0.00	0.00	3.41
2367	2592	6.640907	CCTAAATATGTAAATTCCGCTTTGCC	59.359	38.462	0.00	0.00	0.00	4.52
2580	2805	1.880340	CTTGCTCGACGGCCTGATC	60.880	63.158	0.00	0.00	0.00	2.92
2674	2900	3.023832	CTCTTGTTTGTGACCCCTTGTT	58.976	45.455	0.00	0.00	0.00	2.83
2676	2902	3.445805	TCTTGTTTGTGACCCCTTGTTTC	59.554	43.478	0.00	0.00	0.00	2.78
2687	6910	2.949644	CCCCTTGTTTCCGTATTCATCC	59.050	50.000	0.00	0.00	0.00	3.51
2741	6965	2.091555	ACCCTTTCCACTTTGCCAAGTA	60.092	45.455	2.38	0.00	41.69	2.24
2742	6966	2.962421	CCCTTTCCACTTTGCCAAGTAA	59.038	45.455	2.38	0.00	41.69	2.24
2812	7036	6.761242	GGTGCTCTTAAAACACATTTCCTTTT	59.239	34.615	0.00	0.00	36.00	2.27
2813	7037	7.923878	GGTGCTCTTAAAACACATTTCCTTTTA	59.076	33.333	0.00	0.00	36.00	1.52
2814	7038	9.308318	GTGCTCTTAAAACACATTTCCTTTTAA	57.692	29.630	0.00	0.00	34.43	1.52
2816	7040	9.529325	GCTCTTAAAACACATTTCCTTTTAACT	57.471	29.630	0.00	0.00	30.13	2.24
2871	7095	3.427528	GCATGCAAGTGTTGTGATTTCTG	59.572	43.478	14.21	0.00	0.00	3.02
2881	7105	1.073763	TGTGATTTCTGGGTGGGAGTG	59.926	52.381	0.00	0.00	0.00	3.51
2885	7109	2.584835	TTTCTGGGTGGGAGTGATTG	57.415	50.000	0.00	0.00	0.00	2.67
2911	7135	2.963101	TCTGGTTATATGACTGGACCCG	59.037	50.000	0.00	0.00	0.00	5.28
2925	7149	1.275010	GGACCCGTGGCATTTGAAATT	59.725	47.619	0.00	0.00	0.00	1.82
2935	7159	5.461737	GTGGCATTTGAAATTGAGACGAAAA	59.538	36.000	0.00	0.00	0.00	2.29
2960	7184	4.226761	ACAAATTTGCAACTAGCTTACGC	58.773	39.130	18.12	0.00	45.94	4.42
3023	7307	1.480954	AGGTTTCCATAGCGACGACAT	59.519	47.619	0.00	0.00	0.00	3.06
3033	7317	1.531149	AGCGACGACATTGAAAGGTTG	59.469	47.619	0.00	0.00	0.00	3.77
3096	7408	3.287222	ACAAAGCTTACAACTTGCTCCA	58.713	40.909	0.00	0.00	35.85	3.86
3100	7412	2.040278	AGCTTACAACTTGCTCCATCCA	59.960	45.455	0.00	0.00	30.41	3.41
3102	7414	3.065925	GCTTACAACTTGCTCCATCCATC	59.934	47.826	0.00	0.00	0.00	3.51
3109	7425	4.265073	ACTTGCTCCATCCATCTACAAAC	58.735	43.478	0.00	0.00	0.00	2.93
3113	7429	5.368145	TGCTCCATCCATCTACAAACATAC	58.632	41.667	0.00	0.00	0.00	2.39
3160	7476	6.475076	CAGACTACATACAGACTGAAATGAGC	59.525	42.308	21.47	11.56	39.66	4.26
3168	7484	4.335315	ACAGACTGAAATGAGCGAACAAAA	59.665	37.500	10.08	0.00	0.00	2.44
3172	7488	4.798387	ACTGAAATGAGCGAACAAAAACAC	59.202	37.500	0.00	0.00	0.00	3.32
3177	7493	7.219917	TGAAATGAGCGAACAAAAACACTAAAG	59.780	33.333	0.00	0.00	0.00	1.85
3242	7558	4.494091	ACAATAGTGAATGGAGGGAGTG	57.506	45.455	0.00	0.00	0.00	3.51
3257	7573	2.034124	GGAGTGCATATGTGGGCATTT	58.966	47.619	4.29	0.00	42.75	2.32
3261	7577	3.319972	AGTGCATATGTGGGCATTTCATC	59.680	43.478	4.29	0.00	42.75	2.92
3291	7607	2.352127	GGATTCTGCTTGCTTCCACAAC	60.352	50.000	0.00	0.00	0.00	3.32
3292	7608	1.761449	TTCTGCTTGCTTCCACAACA	58.239	45.000	0.00	0.00	0.00	3.33
3295	7611	0.032403	TGCTTGCTTCCACAACATGC	59.968	50.000	0.00	0.00	35.64	4.06
3296	7612	0.032403	GCTTGCTTCCACAACATGCA	59.968	50.000	0.00	0.00	35.29	3.96
3297	7613	1.774639	CTTGCTTCCACAACATGCAC	58.225	50.000	0.00	0.00	33.13	4.57
3298	7614	1.338973	CTTGCTTCCACAACATGCACT	59.661	47.619	0.00	0.00	33.13	4.40
3299	7615	0.669619	TGCTTCCACAACATGCACTG	59.330	50.000	0.00	0.00	0.00	3.66
3300	7616	0.953727	GCTTCCACAACATGCACTGA	59.046	50.000	0.00	0.00	0.00	3.41
3301	7617	1.542915	GCTTCCACAACATGCACTGAT	59.457	47.619	0.00	0.00	0.00	2.90
3302	7618	2.670229	GCTTCCACAACATGCACTGATG	60.670	50.000	0.00	0.00	34.04	3.07
3303	7619	2.565046	TCCACAACATGCACTGATGA	57.435	45.000	11.40	1.07	32.32	2.92
3304	7620	3.076079	TCCACAACATGCACTGATGAT	57.924	42.857	11.40	0.00	32.32	2.45
3305	7621	2.750712	TCCACAACATGCACTGATGATG	59.249	45.455	11.40	4.17	33.52	3.07
3306	7622	2.526077	CACAACATGCACTGATGATGC	58.474	47.619	11.40	0.00	43.68	3.91
3307	7623	2.163613	CACAACATGCACTGATGATGCT	59.836	45.455	11.40	0.00	43.77	3.79
3321	7637	0.807496	GATGCTCACCACCAGAAAGC	59.193	55.000	0.00	0.00	0.00	3.51
3325	7641	1.612726	GCTCACCACCAGAAAGCTCAT	60.613	52.381	0.00	0.00	0.00	2.90
3341	7657	8.049117	AGAAAGCTCATCACATTTCCACTATTA	58.951	33.333	0.00	0.00	33.16	0.98
3342	7658	7.559590	AAGCTCATCACATTTCCACTATTAC	57.440	36.000	0.00	0.00	0.00	1.89
3359	7675	7.148474	CCACTATTACACAGTACAACCAATCAC	60.148	40.741	0.00	0.00	0.00	3.06
3376	7692	5.449041	CCAATCACAGTATCCCAATTTCACG	60.449	44.000	0.00	0.00	0.00	4.35
3426	7742	3.983988	CGCCTATTGACACTGCACTATAG	59.016	47.826	0.00	0.00	0.00	1.31

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
699	703	2.119391	GGCACCCCATTTGTCCCA	59.881	61.111	0.00	0.00	0.00	4.37
722	726	5.774878	ATCAAGCGATTCGATATGACATG	57.225	39.130	10.88	0.00	0.00	3.21
726	730	6.843069	TCAAAATCAAGCGATTCGATATGA	57.157	33.333	10.88	10.40	41.12	2.15
727	731	7.477733	CAGATCAAAATCAAGCGATTCGATATG	59.522	37.037	10.88	5.32	41.12	1.78
728	732	7.386025	TCAGATCAAAATCAAGCGATTCGATAT	59.614	33.333	10.88	0.00	41.12	1.63
729	733	6.701400	TCAGATCAAAATCAAGCGATTCGATA	59.299	34.615	10.88	0.00	41.12	2.92
730	734	5.525012	TCAGATCAAAATCAAGCGATTCGAT	59.475	36.000	10.88	0.00	41.12	3.59
731	735	4.869861	TCAGATCAAAATCAAGCGATTCGA	59.130	37.500	10.88	0.00	41.12	3.71
732	736	4.960354	GTCAGATCAAAATCAAGCGATTCG	59.040	41.667	0.62	0.62	41.12	3.34
734	738	5.413833	ACTGTCAGATCAAAATCAAGCGATT	59.586	36.000	6.91	0.00	43.94	3.34
736	740	4.318332	ACTGTCAGATCAAAATCAAGCGA	58.682	39.130	6.91	0.00	34.07	4.93
737	741	4.675190	ACTGTCAGATCAAAATCAAGCG	57.325	40.909	6.91	0.00	34.07	4.68
793	845	9.959749	AATCTTTAAAGCGAGAATTTTACACAA	57.040	25.926	10.51	0.00	0.00	3.33
894	946	8.147058	AGCATTTCATTATTACAACAACCACAA	58.853	29.630	0.00	0.00	0.00	3.33
986	1038	1.800805	CGCCATCTTCAGTGTCTGTT	58.199	50.000	0.00	0.00	32.61	3.16
1158	1210	6.586082	CACCAATAACATTCTTGTAAGCAACC	59.414	38.462	0.00	0.00	34.06	3.77
1386	1438	6.215636	ACCTGTAGTAATCACCCTTCATCTTT	59.784	38.462	0.00	0.00	0.00	2.52
1440	1492	2.495409	TGCAGTGAAGCAAACATGTG	57.505	45.000	0.00	0.00	42.46	3.21
1455	1507	5.041287	CAGCCAAATCAATCTAATGTGCAG	58.959	41.667	0.00	0.00	0.00	4.41
1932	2051	7.441878	GCACAAATATCAGATAAAACTGTGC	57.558	36.000	21.54	21.54	46.94	4.57
2022	2179	5.652014	TCCTTTATTTGCCTATCCAACTGTG	59.348	40.000	0.00	0.00	0.00	3.66
2160	2384	1.200948	GCCTCATCAAAAGCCTGACAC	59.799	52.381	0.00	0.00	0.00	3.67
2214	2438	4.318332	TGATCAAAGTGCTGTCCTTGTAG	58.682	43.478	0.00	0.00	0.00	2.74
2288	2512	2.288886	GGGTATGCTCGGGAGTAATGAC	60.289	54.545	0.00	0.00	0.00	3.06
2294	2518	1.043673	GTGAGGGTATGCTCGGGAGT	61.044	60.000	0.00	0.00	0.00	3.85
2580	2805	0.464373	ATAACCAGTGCAGCCCGATG	60.464	55.000	0.00	0.00	0.00	3.84
2674	2900	3.869065	AGAAAAGCGGATGAATACGGAA	58.131	40.909	0.00	0.00	33.88	4.30
2676	2902	3.871594	AGAAGAAAAGCGGATGAATACGG	59.128	43.478	0.00	0.00	33.88	4.02
2687	6910	1.136336	CGTCCGGAAAGAAGAAAAGCG	60.136	52.381	5.23	0.00	0.00	4.68
2812	7036	3.119245	GGTCGCAGAACCAGATGTAGTTA	60.119	47.826	0.00	0.00	39.11	2.24
2813	7037	2.353803	GGTCGCAGAACCAGATGTAGTT	60.354	50.000	0.00	0.00	39.11	2.24
2814	7038	1.204941	GGTCGCAGAACCAGATGTAGT	59.795	52.381	0.00	0.00	39.11	2.73
2816	7040	0.172578	CGGTCGCAGAACCAGATGTA	59.827	55.000	1.37	0.00	44.71	2.29
2871	7095	3.947834	CAGATAAACAATCACTCCCACCC	59.052	47.826	0.00	0.00	37.03	4.61
2881	7105	9.778741	TCCAGTCATATAACCAGATAAACAATC	57.221	33.333	0.00	0.00	34.52	2.67
2885	7109	6.935208	GGGTCCAGTCATATAACCAGATAAAC	59.065	42.308	0.00	0.00	0.00	2.01
2911	7135	4.159377	TCGTCTCAATTTCAAATGCCAC	57.841	40.909	0.00	0.00	0.00	5.01
2925	7149	5.164233	TGCAAATTTGTTGTTTTCGTCTCA	58.836	33.333	19.03	1.62	0.00	3.27
2935	7159	5.685511	CGTAAGCTAGTTGCAAATTTGTTGT	59.314	36.000	19.03	5.13	45.94	3.32
2960	7184	5.928264	TCATCGCATCATCTGGTTAACATAG	59.072	40.000	8.10	5.41	0.00	2.23
3023	7307	7.665559	AGCAGAAATAGTGTATCAACCTTTCAA	59.334	33.333	0.00	0.00	30.37	2.69
3033	7317	6.260271	GGGGTAAACAGCAGAAATAGTGTATC	59.740	42.308	0.00	0.00	0.00	2.24
3109	7425	9.546909	GCATCAAAATATCCGAAACATAGTATG	57.453	33.333	8.66	8.66	0.00	2.39
3113	7429	7.800380	GTCTGCATCAAAATATCCGAAACATAG	59.200	37.037	0.00	0.00	0.00	2.23
3121	7437	6.791887	ATGTAGTCTGCATCAAAATATCCG	57.208	37.500	0.00	0.00	0.00	4.18
3130	7446	4.949856	TCAGTCTGTATGTAGTCTGCATCA	59.050	41.667	6.71	5.10	34.98	3.07
3131	7447	5.506686	TCAGTCTGTATGTAGTCTGCATC	57.493	43.478	6.71	0.85	34.98	3.91
3134	7450	6.333416	TCATTTCAGTCTGTATGTAGTCTGC	58.667	40.000	13.61	0.00	34.98	4.26
3194	7510	8.571461	AGATGTTTCAGCTTTTCTCATATTCA	57.429	30.769	0.00	0.00	0.00	2.57
3197	7513	9.453572	TGTAAGATGTTTCAGCTTTTCTCATAT	57.546	29.630	5.62	0.00	36.68	1.78
3203	7519	9.334693	CACTATTGTAAGATGTTTCAGCTTTTC	57.665	33.333	5.62	1.92	36.68	2.29
3211	7527	8.616076	CCTCCATTCACTATTGTAAGATGTTTC	58.384	37.037	0.00	0.00	0.00	2.78
3242	7558	2.923605	GCGATGAAATGCCCACATATGC	60.924	50.000	1.58	0.00	34.62	3.14
3257	7573	2.830104	CAGAATCCACATCAGCGATGA	58.170	47.619	20.36	5.53	42.09	2.92
3261	7577	1.063616	CAAGCAGAATCCACATCAGCG	59.936	52.381	0.00	0.00	34.83	5.18
3302	7618	0.807496	GCTTTCTGGTGGTGAGCATC	59.193	55.000	0.00	0.00	33.68	3.91
3303	7619	0.403271	AGCTTTCTGGTGGTGAGCAT	59.597	50.000	0.00	0.00	35.86	3.79
3304	7620	0.250467	GAGCTTTCTGGTGGTGAGCA	60.250	55.000	0.00	0.00	35.86	4.26
3305	7621	0.250467	TGAGCTTTCTGGTGGTGAGC	60.250	55.000	0.00	0.00	0.00	4.26
3306	7622	2.289882	TGATGAGCTTTCTGGTGGTGAG	60.290	50.000	0.00	0.00	0.00	3.51
3307	7623	1.699083	TGATGAGCTTTCTGGTGGTGA	59.301	47.619	0.00	0.00	0.00	4.02
3321	7637	7.550551	ACTGTGTAATAGTGGAAATGTGATGAG	59.449	37.037	0.00	0.00	36.71	2.90
3325	7641	7.672240	TGTACTGTGTAATAGTGGAAATGTGA	58.328	34.615	0.00	0.00	39.27	3.58
3341	7657	4.150897	ACTGTGATTGGTTGTACTGTGT	57.849	40.909	0.00	0.00	0.00	3.72
3342	7658	5.351465	GGATACTGTGATTGGTTGTACTGTG	59.649	44.000	0.00	0.00	0.00	3.66
3359	7675	3.270027	TCTGCGTGAAATTGGGATACTG	58.730	45.455	0.00	0.00	0.00	2.74
3399	7715	1.804372	GCAGTGTCAATAGGCGAGAGG	60.804	57.143	0.00	0.00	0.00	3.69
3400	7716	1.134995	TGCAGTGTCAATAGGCGAGAG	60.135	52.381	0.00	0.00	0.00	3.20
3405	7721	4.985409	GTCTATAGTGCAGTGTCAATAGGC	59.015	45.833	3.69	1.06	0.00	3.93

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.