Multiple sequence alignment - TraesCS3D01G055400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G055400 chr3D 100.000 5222 0 0 1 5222 23056824 23062045 0.000000e+00 9644.0
1 TraesCS3D01G055400 chr3D 92.019 426 20 10 1 420 22378082 22378499 2.100000e-163 586.0
2 TraesCS3D01G055400 chr3B 91.975 972 70 5 3708 4676 40238520 40239486 0.000000e+00 1356.0
3 TraesCS3D01G055400 chr3B 88.937 696 51 15 1 679 40234612 40235298 0.000000e+00 835.0
4 TraesCS3D01G055400 chr3B 91.096 292 23 3 4758 5048 40239623 40239912 4.900000e-105 392.0
5 TraesCS3D01G055400 chr3B 86.431 339 37 5 3146 3476 40237972 40238309 3.840000e-96 363.0
6 TraesCS3D01G055400 chr3B 79.678 497 57 25 1983 2442 40236755 40237244 8.440000e-83 318.0
7 TraesCS3D01G055400 chr3B 86.525 282 34 4 2832 3113 40237582 40237859 1.830000e-79 307.0
8 TraesCS3D01G055400 chr3B 95.455 176 7 1 5048 5222 40243909 40244084 3.980000e-71 279.0
9 TraesCS3D01G055400 chr3B 77.547 481 48 31 740 1191 40235602 40236051 8.740000e-58 235.0
10 TraesCS3D01G055400 chr3B 89.130 138 13 2 1586 1721 40236425 40236562 2.500000e-38 171.0
11 TraesCS3D01G055400 chr3A 92.512 868 50 7 3648 4504 32148696 32149559 0.000000e+00 1229.0
12 TraesCS3D01G055400 chr3A 91.463 820 51 9 2662 3471 32147743 32148553 0.000000e+00 1109.0
13 TraesCS3D01G055400 chr3A 91.304 805 56 7 1850 2651 32146909 32147702 0.000000e+00 1086.0
14 TraesCS3D01G055400 chr3A 90.168 417 27 6 6 413 32144973 32145384 9.960000e-147 531.0
15 TraesCS3D01G055400 chr3A 94.186 258 13 2 4965 5222 32149934 32150189 4.900000e-105 392.0
16 TraesCS3D01G055400 chr3A 86.207 348 18 10 1383 1706 32146552 32146893 2.990000e-92 350.0
17 TraesCS3D01G055400 chr3A 83.224 304 31 11 981 1266 32146138 32146439 1.440000e-65 261.0
18 TraesCS3D01G055400 chr3A 89.697 165 12 4 741 905 32145942 32146101 6.850000e-49 206.0
19 TraesCS3D01G055400 chr3A 80.795 151 17 8 531 677 32145480 32145622 1.990000e-19 108.0
20 TraesCS3D01G055400 chr3A 80.000 100 19 1 4540 4639 323438517 323438615 7.250000e-09 73.1
21 TraesCS3D01G055400 chr3A 80.851 94 14 2 4583 4672 32149571 32149664 2.610000e-08 71.3
22 TraesCS3D01G055400 chr3A 100.000 30 0 0 4491 4520 28570761 28570732 7.310000e-04 56.5
23 TraesCS3D01G055400 chr3A 100.000 30 0 0 4491 4520 94194078 94194107 7.310000e-04 56.5
24 TraesCS3D01G055400 chr5A 83.630 281 29 10 1281 1556 632223867 632223599 1.120000e-61 248.0
25 TraesCS3D01G055400 chr4A 84.615 260 23 10 1283 1537 724134780 724134533 5.220000e-60 243.0
26 TraesCS3D01G055400 chr1B 82.918 281 31 10 1281 1556 626333511 626333243 2.430000e-58 237.0
27 TraesCS3D01G055400 chr1B 84.466 103 12 3 4540 4640 642794446 642794346 1.200000e-16 99.0
28 TraesCS3D01G055400 chr4D 87.500 168 14 5 1391 1556 99935625 99935787 2.480000e-43 187.0
29 TraesCS3D01G055400 chr4D 87.582 153 14 1 1391 1543 446550110 446549963 6.950000e-39 172.0
30 TraesCS3D01G055400 chr4D 94.595 37 1 1 4484 4520 41217685 41217650 7.310000e-04 56.5
31 TraesCS3D01G055400 chr1D 86.310 168 16 3 1391 1556 308937408 308937570 5.370000e-40 176.0
32 TraesCS3D01G055400 chr5B 85.714 168 17 3 1391 1556 516602451 516602289 2.500000e-38 171.0
33 TraesCS3D01G055400 chr6D 89.167 120 11 2 1439 1556 440541139 440541020 1.170000e-31 148.0
34 TraesCS3D01G055400 chr7B 85.393 89 13 0 4540 4628 380859407 380859495 5.570000e-15 93.5
35 TraesCS3D01G055400 chr6A 100.000 30 0 0 4492 4521 597848457 597848486 7.310000e-04 56.5
36 TraesCS3D01G055400 chr2B 100.000 30 0 0 4491 4520 168778305 168778334 7.310000e-04 56.5
37 TraesCS3D01G055400 chr2A 100.000 30 0 0 4491 4520 119302463 119302492 7.310000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G055400 chr3D 23056824 23062045 5221 False 9644.000000 9644 100.000000 1 5222 1 chr3D.!!$F2 5221
1 TraesCS3D01G055400 chr3B 40234612 40244084 9472 False 472.888889 1356 87.419333 1 5222 9 chr3B.!!$F1 5221
2 TraesCS3D01G055400 chr3A 32144973 32150189 5216 False 534.330000 1229 88.040700 6 5222 10 chr3A.!!$F3 5216

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
933 1335 0.027586 GTGCAGCTTCGTTCGTTTGT 59.972 50.0 0.00 0.0 0.00 2.83 F
950 1352 0.041400 TGTTCGTTCGTTCGTAGCGA 60.041 50.0 0.00 0.0 36.51 4.93 F
2576 3173 0.104120 TGCCCCACGATAATGACTCG 59.896 55.0 0.00 0.0 41.77 4.18 F
3486 4215 0.166814 GCAATCTTCTCGCGCTTTGT 59.833 50.0 5.56 0.0 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2148 2705 0.038744 AGTGGACATGGAAAGCTGGG 59.961 55.0 0.00 0.0 0.0 4.45 R
2822 3453 0.317160 TCGGCGGCTATTCACTATGG 59.683 55.0 7.21 0.0 0.0 2.74 R
3546 4291 0.033601 TGAGGCACAAAACACAGGGT 60.034 50.0 0.00 0.0 0.0 4.34 R
4410 5245 0.807496 GATGCTCACCACCAGAAAGC 59.193 55.0 0.00 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 158 1.446792 CCACTAGCAGCTCACCACG 60.447 63.158 0.00 0.00 0.00 4.94
204 210 9.595357 GTAGCAGTTATTGTCAGTTAGTTTTTC 57.405 33.333 0.00 0.00 0.00 2.29
283 294 3.753272 AGCACAACAATCATAGACCACAC 59.247 43.478 0.00 0.00 0.00 3.82
328 339 0.877743 GAGCTCTCAGCCAAACCAAC 59.122 55.000 6.43 0.00 43.77 3.77
333 344 1.202879 TCTCAGCCAAACCAACCGAAT 60.203 47.619 0.00 0.00 0.00 3.34
343 354 6.238511 GCCAAACCAACCGAATAAAAACAAAT 60.239 34.615 0.00 0.00 0.00 2.32
407 427 7.546358 TGACCAGCTAAATCCATTTTTACATG 58.454 34.615 0.00 0.00 0.00 3.21
423 443 3.057969 ACATGCAAGATTCGGACTTCA 57.942 42.857 0.00 0.00 0.00 3.02
435 455 1.852895 CGGACTTCACGAATTCGGATC 59.147 52.381 29.79 18.23 44.95 3.36
457 479 4.158025 TCTTGTTGTGCTCTAGTAGTAGGC 59.842 45.833 4.74 7.71 0.00 3.93
458 480 3.427573 TGTTGTGCTCTAGTAGTAGGCA 58.572 45.455 13.58 13.58 32.94 4.75
460 482 2.656002 TGTGCTCTAGTAGTAGGCAGG 58.344 52.381 16.46 3.49 34.83 4.85
462 484 1.133450 TGCTCTAGTAGTAGGCAGGGG 60.133 57.143 13.58 0.00 32.16 4.79
463 485 1.623163 CTCTAGTAGTAGGCAGGGGC 58.377 60.000 4.74 0.00 40.13 5.80
464 486 0.931468 TCTAGTAGTAGGCAGGGGCA 59.069 55.000 4.74 0.00 43.71 5.36
465 487 1.289830 TCTAGTAGTAGGCAGGGGCAA 59.710 52.381 4.74 0.00 43.71 4.52
467 489 0.839946 AGTAGTAGGCAGGGGCAATG 59.160 55.000 0.00 0.00 43.71 2.82
468 490 0.819666 GTAGTAGGCAGGGGCAATGC 60.820 60.000 0.00 0.00 43.71 3.56
469 491 2.324014 TAGTAGGCAGGGGCAATGCG 62.324 60.000 0.00 0.00 44.80 4.73
470 492 4.504596 TAGGCAGGGGCAATGCGG 62.505 66.667 0.00 0.00 44.80 5.69
491 513 6.485313 TGCGGATTTCAGAAAAAGAAAGTAGA 59.515 34.615 0.00 0.00 38.27 2.59
496 518 4.315803 TCAGAAAAAGAAAGTAGAGGCCG 58.684 43.478 0.00 0.00 0.00 6.13
497 519 4.039973 TCAGAAAAAGAAAGTAGAGGCCGA 59.960 41.667 0.00 0.00 0.00 5.54
568 592 4.018779 TCCATTGTTCTTAACCCTACCCTG 60.019 45.833 0.00 0.00 0.00 4.45
574 598 5.829391 TGTTCTTAACCCTACCCTGTTTTTC 59.171 40.000 0.00 0.00 0.00 2.29
578 602 6.492087 TCTTAACCCTACCCTGTTTTTCATTG 59.508 38.462 0.00 0.00 0.00 2.82
581 605 4.966168 ACCCTACCCTGTTTTTCATTGTTT 59.034 37.500 0.00 0.00 0.00 2.83
586 610 4.635324 ACCCTGTTTTTCATTGTTTTGCAG 59.365 37.500 0.00 0.00 0.00 4.41
604 629 5.465532 TGCAGGCACAATTATTTTCTTGA 57.534 34.783 0.00 0.00 0.00 3.02
605 630 6.040209 TGCAGGCACAATTATTTTCTTGAT 57.960 33.333 0.00 0.00 0.00 2.57
625 650 8.811017 TCTTGATTCACTCTCTTCAGTCTTATT 58.189 33.333 0.00 0.00 0.00 1.40
626 651 8.994429 TTGATTCACTCTCTTCAGTCTTATTC 57.006 34.615 0.00 0.00 0.00 1.75
633 658 8.191446 CACTCTCTTCAGTCTTATTCCGAAATA 58.809 37.037 0.00 0.00 0.00 1.40
634 659 8.919145 ACTCTCTTCAGTCTTATTCCGAAATAT 58.081 33.333 0.00 0.00 0.00 1.28
673 698 2.032549 CACTGCACTGAAAGCACACTAC 60.033 50.000 0.00 0.00 37.60 2.73
679 704 4.378459 GCACTGAAAGCACACTACCATTAC 60.378 45.833 0.00 0.00 37.60 1.89
681 706 6.163476 CACTGAAAGCACACTACCATTACTA 58.837 40.000 0.00 0.00 37.60 1.82
684 709 8.537016 ACTGAAAGCACACTACCATTACTATTA 58.463 33.333 0.00 0.00 37.60 0.98
688 742 9.774413 AAAGCACACTACCATTACTATTATACC 57.226 33.333 0.00 0.00 0.00 2.73
693 747 8.654094 ACACTACCATTACTATTATACCCCAAC 58.346 37.037 0.00 0.00 0.00 3.77
723 1066 5.590530 TTTTGGGGTCCAATCATTAATCG 57.409 39.130 0.00 0.00 43.55 3.34
732 1075 6.016777 GGTCCAATCATTAATCGCAGAAGAAT 60.017 38.462 0.00 0.00 43.58 2.40
735 1078 9.288576 TCCAATCATTAATCGCAGAAGAATAAT 57.711 29.630 0.00 0.00 43.58 1.28
773 1152 3.269381 TGCAAAGTTCCCTCCAATATCCT 59.731 43.478 0.00 0.00 0.00 3.24
784 1163 3.976654 CTCCAATATCCTCTTCTTCCCCA 59.023 47.826 0.00 0.00 0.00 4.96
813 1192 1.527370 CCCCTCGAATTCTCCCACC 59.473 63.158 3.52 0.00 0.00 4.61
815 1194 0.179000 CCCTCGAATTCTCCCACCTG 59.821 60.000 3.52 0.00 0.00 4.00
819 1198 1.825474 TCGAATTCTCCCACCTGTCTC 59.175 52.381 3.52 0.00 0.00 3.36
820 1199 1.827969 CGAATTCTCCCACCTGTCTCT 59.172 52.381 3.52 0.00 0.00 3.10
821 1200 2.159170 CGAATTCTCCCACCTGTCTCTC 60.159 54.545 3.52 0.00 0.00 3.20
822 1201 2.938428 ATTCTCCCACCTGTCTCTCT 57.062 50.000 0.00 0.00 0.00 3.10
823 1202 2.223803 TTCTCCCACCTGTCTCTCTC 57.776 55.000 0.00 0.00 0.00 3.20
831 1210 3.273434 CACCTGTCTCTCTCTCTCTCTG 58.727 54.545 0.00 0.00 0.00 3.35
833 1212 3.273434 CCTGTCTCTCTCTCTCTCTGTG 58.727 54.545 0.00 0.00 0.00 3.66
839 1218 7.625469 TGTCTCTCTCTCTCTCTGTGTTATAA 58.375 38.462 0.00 0.00 0.00 0.98
844 1223 7.279090 TCTCTCTCTCTCTGTGTTATAAACTCG 59.721 40.741 0.00 0.00 0.00 4.18
886 1286 4.624364 CTCCCACACGCAGCACCA 62.624 66.667 0.00 0.00 0.00 4.17
893 1293 1.210931 CACGCAGCACCAATTCCAG 59.789 57.895 0.00 0.00 0.00 3.86
908 1310 1.586042 CCAGCACACACGCAACAAC 60.586 57.895 0.00 0.00 0.00 3.32
911 1313 0.179166 AGCACACACGCAACAACAAG 60.179 50.000 0.00 0.00 0.00 3.16
913 1315 0.455802 CACACACGCAACAACAAGCA 60.456 50.000 0.00 0.00 0.00 3.91
914 1316 0.179166 ACACACGCAACAACAAGCAG 60.179 50.000 0.00 0.00 0.00 4.24
918 1320 1.226632 CGCAACAACAAGCAGTGCA 60.227 52.632 19.20 0.00 0.00 4.57
919 1321 1.204228 CGCAACAACAAGCAGTGCAG 61.204 55.000 19.20 11.98 0.00 4.41
928 1330 2.171940 GCAGTGCAGCTTCGTTCG 59.828 61.111 11.09 0.00 0.00 3.95
929 1331 2.598632 GCAGTGCAGCTTCGTTCGT 61.599 57.895 11.09 0.00 0.00 3.85
930 1332 1.934463 CAGTGCAGCTTCGTTCGTT 59.066 52.632 0.00 0.00 0.00 3.85
931 1333 0.304705 CAGTGCAGCTTCGTTCGTTT 59.695 50.000 0.00 0.00 0.00 3.60
933 1335 0.027586 GTGCAGCTTCGTTCGTTTGT 59.972 50.000 0.00 0.00 0.00 2.83
934 1336 0.730265 TGCAGCTTCGTTCGTTTGTT 59.270 45.000 0.00 0.00 0.00 2.83
935 1337 1.267832 TGCAGCTTCGTTCGTTTGTTC 60.268 47.619 0.00 0.00 0.00 3.18
936 1338 1.647748 CAGCTTCGTTCGTTTGTTCG 58.352 50.000 0.00 0.00 0.00 3.95
937 1339 1.005347 CAGCTTCGTTCGTTTGTTCGT 60.005 47.619 0.00 0.00 0.00 3.85
938 1340 1.662122 AGCTTCGTTCGTTTGTTCGTT 59.338 42.857 0.00 0.00 0.00 3.85
939 1341 2.024881 GCTTCGTTCGTTTGTTCGTTC 58.975 47.619 0.00 0.00 0.00 3.95
940 1342 2.275184 CTTCGTTCGTTTGTTCGTTCG 58.725 47.619 0.00 0.00 0.00 3.95
941 1343 1.267365 TCGTTCGTTTGTTCGTTCGT 58.733 45.000 0.00 0.00 33.45 3.85
942 1344 1.653114 TCGTTCGTTTGTTCGTTCGTT 59.347 42.857 0.00 0.00 33.45 3.85
943 1345 2.015133 CGTTCGTTTGTTCGTTCGTTC 58.985 47.619 0.00 0.00 0.00 3.95
944 1346 2.015133 GTTCGTTTGTTCGTTCGTTCG 58.985 47.619 0.00 0.00 0.00 3.95
945 1347 1.267365 TCGTTTGTTCGTTCGTTCGT 58.733 45.000 2.67 0.00 0.00 3.85
946 1348 2.445316 TCGTTTGTTCGTTCGTTCGTA 58.555 42.857 2.67 0.00 0.00 3.43
947 1349 2.463653 TCGTTTGTTCGTTCGTTCGTAG 59.536 45.455 2.67 0.00 0.00 3.51
948 1350 2.543646 GTTTGTTCGTTCGTTCGTAGC 58.456 47.619 2.67 0.00 0.00 3.58
949 1351 0.771756 TTGTTCGTTCGTTCGTAGCG 59.228 50.000 2.67 0.00 0.00 4.26
950 1352 0.041400 TGTTCGTTCGTTCGTAGCGA 60.041 50.000 0.00 0.00 36.51 4.93
951 1353 0.627307 GTTCGTTCGTTCGTAGCGAG 59.373 55.000 0.00 0.00 39.61 5.03
952 1354 0.453282 TTCGTTCGTTCGTAGCGAGG 60.453 55.000 0.00 0.00 39.61 4.63
953 1355 1.154338 CGTTCGTTCGTAGCGAGGT 60.154 57.895 0.00 0.00 39.61 3.85
955 1357 0.110056 GTTCGTTCGTAGCGAGGTGA 60.110 55.000 0.00 0.00 39.61 4.02
969 1371 3.677424 GCGAGGTGAAAGATTCTGCTAGT 60.677 47.826 0.00 0.00 0.00 2.57
972 1374 5.163913 CGAGGTGAAAGATTCTGCTAGTTTG 60.164 44.000 0.00 0.00 0.00 2.93
974 1376 4.762251 GGTGAAAGATTCTGCTAGTTTGGT 59.238 41.667 0.00 0.00 0.00 3.67
979 1381 6.809630 AAGATTCTGCTAGTTTGGTTTCTC 57.190 37.500 0.00 0.00 0.00 2.87
984 1389 3.128349 TGCTAGTTTGGTTTCTCGTGTC 58.872 45.455 0.00 0.00 0.00 3.67
1056 1467 2.507992 CTGCTCCTTGACGGCGAG 60.508 66.667 16.62 0.00 0.00 5.03
1101 1512 2.501222 GTCGCGCTCTTCGTCGAA 60.501 61.111 5.56 7.57 43.80 3.71
1124 1535 2.180017 GCCGTTCGCGTAAGGAGA 59.820 61.111 20.86 0.00 39.32 3.71
1126 1537 1.505353 CCGTTCGCGTAAGGAGACT 59.495 57.895 12.12 0.00 40.52 3.24
1128 1539 0.167470 CGTTCGCGTAAGGAGACTCA 59.833 55.000 5.77 0.00 36.00 3.41
1137 1550 0.545548 AAGGAGACTCACCCACCCTC 60.546 60.000 4.53 0.00 42.68 4.30
1138 1551 1.229209 GGAGACTCACCCACCCTCA 60.229 63.158 4.53 0.00 0.00 3.86
1146 1559 0.468029 CACCCACCCTCACAAGCTTT 60.468 55.000 0.00 0.00 0.00 3.51
1150 1563 1.882623 CCACCCTCACAAGCTTTCTTC 59.117 52.381 0.00 0.00 0.00 2.87
1160 1573 3.181458 ACAAGCTTTCTTCGTGAGGGTTA 60.181 43.478 0.00 0.00 0.00 2.85
1165 1578 4.723248 CTTTCTTCGTGAGGGTTATTTGC 58.277 43.478 0.00 0.00 0.00 3.68
1167 1580 4.811969 TCTTCGTGAGGGTTATTTGCTA 57.188 40.909 0.00 0.00 0.00 3.49
1208 1654 1.006813 TGTTGGGCCTTGGGATATGT 58.993 50.000 4.53 0.00 0.00 2.29
1215 1661 4.019174 GGGCCTTGGGATATGTGAATATG 58.981 47.826 0.84 0.00 0.00 1.78
1217 1663 4.946157 GGCCTTGGGATATGTGAATATGAG 59.054 45.833 0.00 0.00 0.00 2.90
1221 1667 6.883217 CCTTGGGATATGTGAATATGAGGAAG 59.117 42.308 0.00 0.00 0.00 3.46
1222 1668 7.392766 TTGGGATATGTGAATATGAGGAAGT 57.607 36.000 0.00 0.00 0.00 3.01
1223 1669 6.772605 TGGGATATGTGAATATGAGGAAGTG 58.227 40.000 0.00 0.00 0.00 3.16
1225 1671 6.876257 GGGATATGTGAATATGAGGAAGTGAC 59.124 42.308 0.00 0.00 0.00 3.67
1232 1684 6.312426 GTGAATATGAGGAAGTGACTGAGTTG 59.688 42.308 0.00 0.00 0.00 3.16
1233 1685 6.014242 TGAATATGAGGAAGTGACTGAGTTGT 60.014 38.462 0.00 0.00 0.00 3.32
1235 1687 3.031013 TGAGGAAGTGACTGAGTTGTCA 58.969 45.455 0.00 0.00 43.72 3.58
1250 1702 3.316308 AGTTGTCAGTGAATTGGTTCAGC 59.684 43.478 0.00 0.00 44.58 4.26
1256 1708 2.887152 AGTGAATTGGTTCAGCTGGTTC 59.113 45.455 15.13 9.34 44.58 3.62
1258 1710 3.068024 GTGAATTGGTTCAGCTGGTTCAA 59.932 43.478 15.13 15.11 44.58 2.69
1266 1718 2.997980 TCAGCTGGTTCAACACTTGAA 58.002 42.857 15.13 0.00 46.68 2.69
1281 1733 8.653338 TCAACACTTGAATTAGTACGAAATAGC 58.347 33.333 0.00 0.00 36.59 2.97
1282 1734 8.656849 CAACACTTGAATTAGTACGAAATAGCT 58.343 33.333 0.00 0.00 0.00 3.32
1283 1735 8.773404 ACACTTGAATTAGTACGAAATAGCTT 57.227 30.769 0.00 0.00 0.00 3.74
1284 1736 8.870879 ACACTTGAATTAGTACGAAATAGCTTC 58.129 33.333 0.00 0.00 0.00 3.86
1285 1737 9.088512 CACTTGAATTAGTACGAAATAGCTTCT 57.911 33.333 0.00 0.00 31.20 2.85
1286 1738 9.654663 ACTTGAATTAGTACGAAATAGCTTCTT 57.345 29.630 0.00 0.00 31.20 2.52
1289 1741 9.431887 TGAATTAGTACGAAATAGCTTCTTTGT 57.568 29.630 0.00 0.00 31.20 2.83
1292 1744 6.481954 AGTACGAAATAGCTTCTTTGTTGG 57.518 37.500 0.00 0.00 31.20 3.77
1293 1745 4.766404 ACGAAATAGCTTCTTTGTTGGG 57.234 40.909 0.00 0.00 31.20 4.12
1294 1746 3.057526 ACGAAATAGCTTCTTTGTTGGGC 60.058 43.478 0.00 0.00 31.20 5.36
1295 1747 3.501950 GAAATAGCTTCTTTGTTGGGCG 58.498 45.455 0.00 0.00 0.00 6.13
1296 1748 2.200373 ATAGCTTCTTTGTTGGGCGT 57.800 45.000 0.00 0.00 0.00 5.68
1300 1752 1.864029 GCTTCTTTGTTGGGCGTGAAC 60.864 52.381 0.00 0.00 0.00 3.18
1304 1756 2.428890 TCTTTGTTGGGCGTGAACAAAT 59.571 40.909 16.35 0.00 46.74 2.32
1305 1757 2.500509 TTGTTGGGCGTGAACAAATC 57.499 45.000 5.84 0.00 39.71 2.17
1311 1763 1.197721 GGGCGTGAACAAATCTGTGAG 59.802 52.381 0.00 0.00 35.37 3.51
1344 1796 7.851822 TTTGAAACAGAAACTATCGAATTGC 57.148 32.000 0.00 0.00 0.00 3.56
1345 1797 6.552859 TGAAACAGAAACTATCGAATTGCA 57.447 33.333 0.00 0.00 0.00 4.08
1346 1798 7.144722 TGAAACAGAAACTATCGAATTGCAT 57.855 32.000 0.00 0.00 0.00 3.96
1348 1800 7.538334 TGAAACAGAAACTATCGAATTGCATTG 59.462 33.333 0.00 0.00 0.00 2.82
1349 1801 5.335127 ACAGAAACTATCGAATTGCATTGC 58.665 37.500 0.46 0.46 0.00 3.56
1350 1802 4.736793 CAGAAACTATCGAATTGCATTGCC 59.263 41.667 6.12 0.00 0.00 4.52
1352 1804 2.936202 ACTATCGAATTGCATTGCCCT 58.064 42.857 6.12 0.00 0.00 5.19
1360 1818 1.702182 TTGCATTGCCCTGACAGAAA 58.298 45.000 3.32 0.00 0.00 2.52
1363 1821 1.820519 GCATTGCCCTGACAGAAATCA 59.179 47.619 3.32 0.00 0.00 2.57
1405 1881 3.018856 TGCTTGATGGTGATTAAGCTGG 58.981 45.455 11.44 0.00 46.49 4.85
1409 1885 3.620488 TGATGGTGATTAAGCTGGGTTC 58.380 45.455 0.00 0.00 0.00 3.62
1427 1903 3.609853 GTTCCCATGTATGCTCTCACAA 58.390 45.455 0.00 0.00 0.00 3.33
1460 1936 0.544120 GATTTTGGGTGGGCCTTCCA 60.544 55.000 17.27 15.31 44.79 3.53
1468 1944 1.683025 TGGGCCTTCCATGCATGTG 60.683 57.895 24.58 15.94 41.46 3.21
1588 2112 4.081476 CAGGACAGTGGATGATTAGTGTGA 60.081 45.833 0.00 0.00 30.99 3.58
1613 2137 9.362539 GACTTAATTTAGGACGTTTCTGATGTA 57.637 33.333 0.00 0.00 0.00 2.29
1711 2242 4.569719 TGGAGGTAAATTCTCAAGGGAC 57.430 45.455 0.00 0.00 33.18 4.46
1712 2243 3.913799 TGGAGGTAAATTCTCAAGGGACA 59.086 43.478 0.00 0.00 33.18 4.02
1722 2253 8.712228 AAATTCTCAAGGGACATTTTTCTAGT 57.288 30.769 0.00 0.00 0.00 2.57
1725 2256 9.807921 ATTCTCAAGGGACATTTTTCTAGTTTA 57.192 29.630 0.00 0.00 0.00 2.01
1727 2258 7.883311 TCTCAAGGGACATTTTTCTAGTTTAGG 59.117 37.037 0.00 0.00 0.00 2.69
1728 2259 6.433093 TCAAGGGACATTTTTCTAGTTTAGGC 59.567 38.462 0.00 0.00 0.00 3.93
1729 2260 5.262009 AGGGACATTTTTCTAGTTTAGGCC 58.738 41.667 0.00 0.00 0.00 5.19
1730 2261 5.014202 GGGACATTTTTCTAGTTTAGGCCA 58.986 41.667 5.01 0.00 0.00 5.36
1731 2262 5.656859 GGGACATTTTTCTAGTTTAGGCCAT 59.343 40.000 5.01 0.00 0.00 4.40
1732 2263 6.405842 GGGACATTTTTCTAGTTTAGGCCATG 60.406 42.308 5.01 0.00 0.00 3.66
1733 2264 6.405842 GGACATTTTTCTAGTTTAGGCCATGG 60.406 42.308 7.63 7.63 0.00 3.66
1734 2265 5.105351 ACATTTTTCTAGTTTAGGCCATGGC 60.105 40.000 29.47 29.47 41.06 4.40
1735 2266 4.316025 TTTTCTAGTTTAGGCCATGGCT 57.684 40.909 34.70 22.68 42.39 4.75
1736 2267 4.316025 TTTCTAGTTTAGGCCATGGCTT 57.684 40.909 34.70 30.46 39.70 4.35
1737 2268 4.316025 TTCTAGTTTAGGCCATGGCTTT 57.684 40.909 34.70 24.78 39.70 3.51
1738 2269 3.886123 TCTAGTTTAGGCCATGGCTTTC 58.114 45.455 34.70 19.40 39.70 2.62
1739 2270 2.603075 AGTTTAGGCCATGGCTTTCA 57.397 45.000 34.70 15.96 39.70 2.69
1740 2271 2.888212 AGTTTAGGCCATGGCTTTCAA 58.112 42.857 34.70 20.69 39.70 2.69
1741 2272 3.238597 AGTTTAGGCCATGGCTTTCAAA 58.761 40.909 34.70 22.44 39.70 2.69
1742 2273 3.259123 AGTTTAGGCCATGGCTTTCAAAG 59.741 43.478 34.70 0.00 39.70 2.77
1743 2274 1.851304 TAGGCCATGGCTTTCAAAGG 58.149 50.000 34.70 0.00 39.70 3.11
1744 2275 0.114954 AGGCCATGGCTTTCAAAGGA 59.885 50.000 34.70 0.00 41.60 3.36
1745 2276 0.247460 GGCCATGGCTTTCAAAGGAC 59.753 55.000 34.70 11.50 41.60 3.85
1746 2277 1.260544 GCCATGGCTTTCAAAGGACT 58.739 50.000 29.98 0.00 38.26 3.85
1747 2278 1.620323 GCCATGGCTTTCAAAGGACTT 59.380 47.619 29.98 0.00 38.26 3.01
1748 2279 2.825532 GCCATGGCTTTCAAAGGACTTA 59.174 45.455 29.98 0.00 38.26 2.24
1749 2280 3.119352 GCCATGGCTTTCAAAGGACTTAG 60.119 47.826 29.98 0.00 38.26 2.18
1750 2281 4.082125 CCATGGCTTTCAAAGGACTTAGT 58.918 43.478 0.00 0.00 0.00 2.24
1751 2282 4.524328 CCATGGCTTTCAAAGGACTTAGTT 59.476 41.667 0.00 0.00 0.00 2.24
1752 2283 5.011023 CCATGGCTTTCAAAGGACTTAGTTT 59.989 40.000 0.00 0.00 0.00 2.66
1753 2284 5.767816 TGGCTTTCAAAGGACTTAGTTTC 57.232 39.130 0.00 0.00 0.00 2.78
1754 2285 5.197451 TGGCTTTCAAAGGACTTAGTTTCA 58.803 37.500 0.00 0.00 0.00 2.69
1755 2286 5.067283 TGGCTTTCAAAGGACTTAGTTTCAC 59.933 40.000 0.00 0.00 0.00 3.18
1756 2287 5.299531 GGCTTTCAAAGGACTTAGTTTCACT 59.700 40.000 0.00 0.00 0.00 3.41
1757 2288 6.202226 GCTTTCAAAGGACTTAGTTTCACTG 58.798 40.000 0.00 0.00 0.00 3.66
1758 2289 6.183360 GCTTTCAAAGGACTTAGTTTCACTGT 60.183 38.462 0.00 0.00 0.00 3.55
1759 2290 6.677781 TTCAAAGGACTTAGTTTCACTGTG 57.322 37.500 0.17 0.17 0.00 3.66
1760 2291 5.984725 TCAAAGGACTTAGTTTCACTGTGA 58.015 37.500 6.36 6.36 0.00 3.58
1761 2292 6.411376 TCAAAGGACTTAGTTTCACTGTGAA 58.589 36.000 18.69 18.69 34.03 3.18
1762 2293 6.882140 TCAAAGGACTTAGTTTCACTGTGAAA 59.118 34.615 27.14 27.14 43.37 2.69
1763 2294 7.392113 TCAAAGGACTTAGTTTCACTGTGAAAA 59.608 33.333 31.01 17.92 46.53 2.29
1764 2295 6.927294 AGGACTTAGTTTCACTGTGAAAAG 57.073 37.500 31.01 26.28 46.53 2.27
1765 2296 5.823045 AGGACTTAGTTTCACTGTGAAAAGG 59.177 40.000 31.01 21.18 46.53 3.11
1766 2297 5.820947 GGACTTAGTTTCACTGTGAAAAGGA 59.179 40.000 31.01 18.93 46.53 3.36
1767 2298 6.317893 GGACTTAGTTTCACTGTGAAAAGGAA 59.682 38.462 31.01 23.23 46.53 3.36
1768 2299 7.148137 GGACTTAGTTTCACTGTGAAAAGGAAA 60.148 37.037 31.01 21.44 46.53 3.13
1769 2300 8.293699 ACTTAGTTTCACTGTGAAAAGGAAAT 57.706 30.769 31.01 15.94 46.53 2.17
1770 2301 8.190784 ACTTAGTTTCACTGTGAAAAGGAAATG 58.809 33.333 31.01 20.26 46.53 2.32
1771 2302 5.351458 AGTTTCACTGTGAAAAGGAAATGC 58.649 37.500 31.01 18.66 46.53 3.56
1772 2303 3.624326 TCACTGTGAAAAGGAAATGCG 57.376 42.857 8.27 0.00 0.00 4.73
1773 2304 3.210227 TCACTGTGAAAAGGAAATGCGA 58.790 40.909 8.27 0.00 0.00 5.10
1774 2305 3.629855 TCACTGTGAAAAGGAAATGCGAA 59.370 39.130 8.27 0.00 0.00 4.70
1775 2306 4.097135 TCACTGTGAAAAGGAAATGCGAAA 59.903 37.500 8.27 0.00 0.00 3.46
1776 2307 4.984161 CACTGTGAAAAGGAAATGCGAAAT 59.016 37.500 0.32 0.00 0.00 2.17
1777 2308 6.016693 TCACTGTGAAAAGGAAATGCGAAATA 60.017 34.615 8.27 0.00 0.00 1.40
1778 2309 6.808212 CACTGTGAAAAGGAAATGCGAAATAT 59.192 34.615 0.32 0.00 0.00 1.28
1779 2310 6.808212 ACTGTGAAAAGGAAATGCGAAATATG 59.192 34.615 0.00 0.00 0.00 1.78
1780 2311 6.918626 TGTGAAAAGGAAATGCGAAATATGA 58.081 32.000 0.00 0.00 0.00 2.15
1781 2312 7.374272 TGTGAAAAGGAAATGCGAAATATGAA 58.626 30.769 0.00 0.00 0.00 2.57
1782 2313 7.328249 TGTGAAAAGGAAATGCGAAATATGAAC 59.672 33.333 0.00 0.00 0.00 3.18
1783 2314 7.328249 GTGAAAAGGAAATGCGAAATATGAACA 59.672 33.333 0.00 0.00 0.00 3.18
1784 2315 7.328249 TGAAAAGGAAATGCGAAATATGAACAC 59.672 33.333 0.00 0.00 0.00 3.32
1785 2316 5.248870 AGGAAATGCGAAATATGAACACC 57.751 39.130 0.00 0.00 0.00 4.16
1786 2317 4.035017 GGAAATGCGAAATATGAACACCG 58.965 43.478 0.00 0.00 0.00 4.94
1787 2318 2.755836 ATGCGAAATATGAACACCGC 57.244 45.000 0.00 0.00 42.52 5.68
1788 2319 0.730265 TGCGAAATATGAACACCGCC 59.270 50.000 0.00 0.00 41.65 6.13
1789 2320 0.730265 GCGAAATATGAACACCGCCA 59.270 50.000 0.00 0.00 37.09 5.69
1790 2321 1.333619 GCGAAATATGAACACCGCCAT 59.666 47.619 0.00 0.00 37.09 4.40
1791 2322 2.546368 GCGAAATATGAACACCGCCATA 59.454 45.455 0.00 0.00 37.09 2.74
1792 2323 3.363970 GCGAAATATGAACACCGCCATAG 60.364 47.826 0.00 0.00 37.09 2.23
1793 2324 3.807622 CGAAATATGAACACCGCCATAGT 59.192 43.478 0.00 0.00 0.00 2.12
1794 2325 4.272504 CGAAATATGAACACCGCCATAGTT 59.727 41.667 0.00 0.00 36.60 2.24
1795 2326 5.220777 CGAAATATGAACACCGCCATAGTTT 60.221 40.000 0.00 0.00 34.84 2.66
1796 2327 6.524101 AAATATGAACACCGCCATAGTTTT 57.476 33.333 0.00 0.00 31.94 2.43
1797 2328 3.848272 ATGAACACCGCCATAGTTTTG 57.152 42.857 0.00 0.00 0.00 2.44
1802 2333 2.812011 ACACCGCCATAGTTTTGTCTTC 59.188 45.455 0.00 0.00 0.00 2.87
1812 2343 8.068380 GCCATAGTTTTGTCTTCGGATATAAAC 58.932 37.037 0.00 0.00 0.00 2.01
1813 2344 9.104965 CCATAGTTTTGTCTTCGGATATAAACA 57.895 33.333 0.00 0.00 0.00 2.83
1816 2347 8.617290 AGTTTTGTCTTCGGATATAAACAAGT 57.383 30.769 0.00 0.00 0.00 3.16
1817 2348 8.504005 AGTTTTGTCTTCGGATATAAACAAGTG 58.496 33.333 0.00 0.00 0.00 3.16
1818 2349 6.417191 TTGTCTTCGGATATAAACAAGTGC 57.583 37.500 0.00 0.00 0.00 4.40
1819 2350 4.873827 TGTCTTCGGATATAAACAAGTGCC 59.126 41.667 0.00 0.00 0.00 5.01
1820 2351 4.873827 GTCTTCGGATATAAACAAGTGCCA 59.126 41.667 0.00 0.00 0.00 4.92
1821 2352 5.353123 GTCTTCGGATATAAACAAGTGCCAA 59.647 40.000 0.00 0.00 0.00 4.52
1822 2353 5.353123 TCTTCGGATATAAACAAGTGCCAAC 59.647 40.000 0.00 0.00 0.00 3.77
1823 2354 3.619483 TCGGATATAAACAAGTGCCAACG 59.381 43.478 0.00 0.00 0.00 4.10
1824 2355 3.242608 CGGATATAAACAAGTGCCAACGG 60.243 47.826 0.00 0.00 0.00 4.44
1839 2370 3.485110 CGGCTCAACGCTGCATTA 58.515 55.556 0.00 0.00 38.36 1.90
1875 2406 8.246180 ACTTTAAATGCTTGTATGAACCATGAG 58.754 33.333 0.00 0.00 0.00 2.90
1882 2413 3.261580 TGTATGAACCATGAGTTGCTCG 58.738 45.455 0.00 0.00 39.40 5.03
1883 2414 2.479566 ATGAACCATGAGTTGCTCGT 57.520 45.000 0.00 0.00 39.40 4.18
1903 2434 6.755141 GCTCGTAAGGAATACTACATGTTTCA 59.245 38.462 2.30 0.00 38.47 2.69
1928 2459 8.743714 CAAAGTTTTAGGCATTAGGAGATTCTT 58.256 33.333 0.00 0.00 0.00 2.52
1934 2474 8.738645 TTAGGCATTAGGAGATTCTTCTTTTC 57.261 34.615 0.00 0.00 30.30 2.29
1950 2490 9.825972 TTCTTCTTTTCGTAATTCAAGCTTATG 57.174 29.630 0.00 0.00 0.00 1.90
1956 2496 6.749216 TCGTAATTCAAGCTTATGATCGAC 57.251 37.500 0.00 0.00 0.00 4.20
2007 2548 9.447040 CACTGCAATCATATTACTTTCTGAATG 57.553 33.333 2.09 2.09 0.00 2.67
2027 2576 4.558226 TGAGTGTTCCAGCTGTATGAAT 57.442 40.909 13.81 0.00 0.00 2.57
2032 2581 5.182001 AGTGTTCCAGCTGTATGAATTTGAC 59.818 40.000 13.81 5.53 0.00 3.18
2041 2590 7.795734 CAGCTGTATGAATTTGACGAATGATAC 59.204 37.037 5.25 9.23 31.03 2.24
2061 2610 7.049754 TGATACGATGATCAATCCATAATGGG 58.950 38.462 0.00 0.00 33.87 4.00
2063 2612 5.494724 ACGATGATCAATCCATAATGGGAG 58.505 41.667 0.00 0.00 41.08 4.30
2064 2613 5.249163 ACGATGATCAATCCATAATGGGAGA 59.751 40.000 0.00 0.00 41.08 3.71
2066 2615 6.827251 CGATGATCAATCCATAATGGGAGATT 59.173 38.462 0.00 0.00 41.08 2.40
2067 2616 7.201705 CGATGATCAATCCATAATGGGAGATTG 60.202 40.741 0.00 5.44 44.44 2.67
2068 2617 6.250711 TGATCAATCCATAATGGGAGATTGG 58.749 40.000 10.67 0.00 43.65 3.16
2074 2623 3.152341 CATAATGGGAGATTGGGAGTGC 58.848 50.000 0.00 0.00 0.00 4.40
2075 2624 0.107017 AATGGGAGATTGGGAGTGCG 60.107 55.000 0.00 0.00 0.00 5.34
2082 2631 1.153369 ATTGGGAGTGCGGTGATCG 60.153 57.895 0.00 0.00 42.76 3.69
2086 2635 1.359459 GGGAGTGCGGTGATCGTTTC 61.359 60.000 0.00 0.00 41.72 2.78
2109 2658 0.376152 CGAACCACATGATCTGCTGC 59.624 55.000 0.00 0.00 0.00 5.25
2110 2659 1.747709 GAACCACATGATCTGCTGCT 58.252 50.000 0.00 0.00 0.00 4.24
2140 2696 7.608761 TCCTATTTATGCTTACAACCGTTTTCT 59.391 33.333 0.00 0.00 0.00 2.52
2148 2705 5.617087 GCTTACAACCGTTTTCTCATCCTTC 60.617 44.000 0.00 0.00 0.00 3.46
2228 2785 4.012374 GGATCATCTCAGAGGTTGCAAAA 58.988 43.478 0.00 0.00 0.00 2.44
2274 2831 5.308825 CATCCTCACCTGGAATTATGGTAC 58.691 45.833 0.00 0.00 39.85 3.34
2275 2832 4.631234 TCCTCACCTGGAATTATGGTACT 58.369 43.478 0.00 0.00 32.39 2.73
2276 2833 5.784023 TCCTCACCTGGAATTATGGTACTA 58.216 41.667 0.00 0.00 32.39 1.82
2356 2933 4.154918 CCAAGTAACACTCTGCTCCATTTC 59.845 45.833 0.00 0.00 0.00 2.17
2476 3073 1.937223 TGCTCGTATGGCCGTTAATTG 59.063 47.619 0.77 0.00 0.00 2.32
2515 3112 7.768582 GGTCATTTATTTTACTTTCCAATGGGG 59.231 37.037 0.00 0.00 38.37 4.96
2547 3144 9.736023 AAAAGTAAGTAGAGCACATTCAAAAAG 57.264 29.630 0.00 0.00 0.00 2.27
2562 3159 5.151297 TCAAAAAGAATTCAGAATGCCCC 57.849 39.130 8.44 0.00 34.76 5.80
2563 3160 4.592351 TCAAAAAGAATTCAGAATGCCCCA 59.408 37.500 8.44 0.00 34.76 4.96
2576 3173 0.104120 TGCCCCACGATAATGACTCG 59.896 55.000 0.00 0.00 41.77 4.18
2627 3224 8.665685 CAGAGTAAATTAGTAATGTGGTTGGTC 58.334 37.037 0.00 0.00 0.00 4.02
2640 3237 5.302360 TGTGGTTGGTCTAGTTATTGTGTC 58.698 41.667 0.00 0.00 0.00 3.67
2641 3238 5.163290 TGTGGTTGGTCTAGTTATTGTGTCA 60.163 40.000 0.00 0.00 0.00 3.58
2644 3245 6.485313 TGGTTGGTCTAGTTATTGTGTCAAAG 59.515 38.462 0.00 0.00 0.00 2.77
2825 3456 3.587797 CTGTTTTGATCAGCTTGCCAT 57.412 42.857 0.00 0.00 0.00 4.40
2827 3458 4.669318 CTGTTTTGATCAGCTTGCCATAG 58.331 43.478 0.00 0.00 0.00 2.23
2828 3459 4.081406 TGTTTTGATCAGCTTGCCATAGT 58.919 39.130 0.00 0.00 0.00 2.12
2829 3460 4.082625 TGTTTTGATCAGCTTGCCATAGTG 60.083 41.667 0.00 0.00 0.00 2.74
2830 3461 3.632643 TTGATCAGCTTGCCATAGTGA 57.367 42.857 0.00 0.00 0.00 3.41
2859 3496 6.280643 CCGCCGAATGATATCTATATTTCCA 58.719 40.000 3.98 0.00 0.00 3.53
2862 3499 7.168302 CGCCGAATGATATCTATATTTCCACTC 59.832 40.741 3.98 0.00 0.00 3.51
2875 3512 3.819564 TTCCACTCCAGATACATTCCG 57.180 47.619 0.00 0.00 0.00 4.30
2947 3584 2.749800 GCCATCCACTCCCACTTAATCC 60.750 54.545 0.00 0.00 0.00 3.01
2951 3588 1.656652 CACTCCCACTTAATCCGCAG 58.343 55.000 0.00 0.00 0.00 5.18
2974 3611 6.251376 CAGTTACTGCAAACACTCAAACTTTC 59.749 38.462 0.00 0.00 0.00 2.62
2986 3623 6.098679 CACTCAAACTTTCATGTGACCAAAA 58.901 36.000 0.00 0.00 0.00 2.44
2987 3624 6.757947 CACTCAAACTTTCATGTGACCAAAAT 59.242 34.615 0.00 0.00 0.00 1.82
2988 3625 7.920151 CACTCAAACTTTCATGTGACCAAAATA 59.080 33.333 0.00 0.00 0.00 1.40
2989 3626 8.474025 ACTCAAACTTTCATGTGACCAAAATAA 58.526 29.630 0.00 0.00 0.00 1.40
2998 3635 7.592938 TCATGTGACCAAAATAACACTGATTC 58.407 34.615 0.00 0.00 34.81 2.52
3188 3909 7.304735 TCGTTTCTGATGTTAATGATTTGGTG 58.695 34.615 0.00 0.00 0.00 4.17
3310 4031 6.325596 GCTAAGGTGAAATTCCACTTCATTC 58.674 40.000 0.00 0.00 35.36 2.67
3333 4059 5.183713 TCCTTCTTGAATGTTATGTGCAAGG 59.816 40.000 0.00 0.00 37.23 3.61
3335 4061 5.375417 TCTTGAATGTTATGTGCAAGGTG 57.625 39.130 0.00 0.00 37.23 4.00
3337 4063 2.824936 TGAATGTTATGTGCAAGGTGGG 59.175 45.455 0.00 0.00 0.00 4.61
3345 4071 1.133513 TGTGCAAGGTGGGTTGAGATT 60.134 47.619 0.00 0.00 0.00 2.40
3397 4126 2.158623 TGTTTTCAGTGATGGTGAGCCT 60.159 45.455 0.00 0.00 35.27 4.58
3403 4132 2.486982 CAGTGATGGTGAGCCTGAAAAG 59.513 50.000 0.00 0.00 35.27 2.27
3462 4191 8.026026 GGAGAAGAATCTGGATTTTCTGAAAAC 58.974 37.037 17.06 11.08 35.54 2.43
3472 4201 5.343325 GGATTTTCTGAAAACGTGAGCAATC 59.657 40.000 17.06 7.95 32.37 2.67
3476 4205 4.380531 TCTGAAAACGTGAGCAATCTTCT 58.619 39.130 0.00 0.00 0.00 2.85
3477 4206 4.449068 TCTGAAAACGTGAGCAATCTTCTC 59.551 41.667 0.00 0.00 0.00 2.87
3478 4207 3.184379 TGAAAACGTGAGCAATCTTCTCG 59.816 43.478 0.00 0.00 33.41 4.04
3481 4210 1.346538 GTGAGCAATCTTCTCGCGC 59.653 57.895 0.00 0.00 32.35 6.86
3483 4212 0.390340 TGAGCAATCTTCTCGCGCTT 60.390 50.000 5.56 0.00 33.41 4.68
3484 4213 0.723981 GAGCAATCTTCTCGCGCTTT 59.276 50.000 5.56 0.00 31.86 3.51
3485 4214 0.445436 AGCAATCTTCTCGCGCTTTG 59.555 50.000 5.56 0.00 0.00 2.77
3486 4215 0.166814 GCAATCTTCTCGCGCTTTGT 59.833 50.000 5.56 0.00 0.00 2.83
3487 4216 1.874562 CAATCTTCTCGCGCTTTGTG 58.125 50.000 5.56 0.00 0.00 3.33
3489 4218 2.015736 ATCTTCTCGCGCTTTGTGAT 57.984 45.000 5.56 0.84 36.29 3.06
3491 4220 1.726791 TCTTCTCGCGCTTTGTGATTC 59.273 47.619 5.56 0.00 36.29 2.52
3494 4223 0.989164 CTCGCGCTTTGTGATTCGTA 59.011 50.000 5.56 0.00 36.29 3.43
3499 4228 3.283256 GCGCTTTGTGATTCGTATCATG 58.717 45.455 8.04 1.51 42.49 3.07
3513 4258 5.849858 TCGTATCATGTTTTAACAAGCGTC 58.150 37.500 0.00 0.00 43.03 5.19
3514 4259 4.717299 CGTATCATGTTTTAACAAGCGTCG 59.283 41.667 0.00 0.00 43.03 5.12
3526 4271 4.213700 GCGTCGAGCTTCTATCCG 57.786 61.111 0.00 0.00 44.04 4.18
3527 4272 1.355916 GCGTCGAGCTTCTATCCGT 59.644 57.895 0.00 0.00 44.04 4.69
3528 4273 0.248539 GCGTCGAGCTTCTATCCGTT 60.249 55.000 0.00 0.00 44.04 4.44
3529 4274 1.467875 CGTCGAGCTTCTATCCGTTG 58.532 55.000 0.00 0.00 0.00 4.10
3531 4276 2.731341 CGTCGAGCTTCTATCCGTTGTT 60.731 50.000 0.00 0.00 0.00 2.83
3536 4281 5.761726 TCGAGCTTCTATCCGTTGTTAGATA 59.238 40.000 0.00 0.00 0.00 1.98
3538 4283 6.916387 CGAGCTTCTATCCGTTGTTAGATAAA 59.084 38.462 0.00 0.00 0.00 1.40
3551 4296 9.193133 CGTTGTTAGATAAATATCACTACCCTG 57.807 37.037 3.45 0.00 35.17 4.45
3559 4304 9.174166 GATAAATATCACTACCCTGTGTTTTGT 57.826 33.333 0.00 0.00 38.90 2.83
3560 4305 6.817765 AATATCACTACCCTGTGTTTTGTG 57.182 37.500 0.00 0.00 38.90 3.33
3561 4306 2.294074 TCACTACCCTGTGTTTTGTGC 58.706 47.619 0.00 0.00 38.90 4.57
3562 4307 1.336755 CACTACCCTGTGTTTTGTGCC 59.663 52.381 0.00 0.00 33.61 5.01
3563 4308 1.214424 ACTACCCTGTGTTTTGTGCCT 59.786 47.619 0.00 0.00 0.00 4.75
3568 4313 1.334869 CCTGTGTTTTGTGCCTCACTC 59.665 52.381 0.00 0.00 35.11 3.51
3570 4315 3.466836 CTGTGTTTTGTGCCTCACTCTA 58.533 45.455 0.00 0.00 35.11 2.43
3571 4316 4.067896 CTGTGTTTTGTGCCTCACTCTAT 58.932 43.478 0.00 0.00 35.11 1.98
3573 4318 4.065088 GTGTTTTGTGCCTCACTCTATGA 58.935 43.478 0.00 0.00 35.11 2.15
3587 4332 5.645067 TCACTCTATGAGCTTCATGTTTTGG 59.355 40.000 8.40 0.00 37.70 3.28
3606 4351 3.954200 TGGCACTAATTCTGCTTCATGA 58.046 40.909 7.71 0.00 34.84 3.07
3607 4352 4.334552 TGGCACTAATTCTGCTTCATGAA 58.665 39.130 8.12 8.12 34.84 2.57
3609 4354 5.419788 TGGCACTAATTCTGCTTCATGAATT 59.580 36.000 8.96 1.75 42.98 2.17
3611 4356 7.122501 TGGCACTAATTCTGCTTCATGAATTAA 59.877 33.333 8.96 1.84 41.57 1.40
3612 4357 8.139989 GGCACTAATTCTGCTTCATGAATTAAT 58.860 33.333 8.96 4.07 41.57 1.40
3613 4358 8.965172 GCACTAATTCTGCTTCATGAATTAATG 58.035 33.333 8.96 5.13 41.39 1.90
3619 4364 9.745880 ATTCTGCTTCATGAATTAATGATTGAC 57.254 29.630 8.96 0.00 36.48 3.18
3620 4365 7.412063 TCTGCTTCATGAATTAATGATTGACG 58.588 34.615 8.96 0.00 36.48 4.35
3621 4366 6.497437 TGCTTCATGAATTAATGATTGACGG 58.503 36.000 8.96 0.00 36.48 4.79
3622 4367 5.916883 GCTTCATGAATTAATGATTGACGGG 59.083 40.000 8.96 0.00 36.48 5.28
3623 4368 6.389830 TTCATGAATTAATGATTGACGGGG 57.610 37.500 6.31 0.00 36.48 5.73
3624 4369 5.445069 TCATGAATTAATGATTGACGGGGT 58.555 37.500 0.87 0.00 31.58 4.95
3625 4370 6.596621 TCATGAATTAATGATTGACGGGGTA 58.403 36.000 0.87 0.00 31.58 3.69
3626 4371 6.485313 TCATGAATTAATGATTGACGGGGTAC 59.515 38.462 0.87 0.00 31.58 3.34
3627 4372 5.996644 TGAATTAATGATTGACGGGGTACT 58.003 37.500 0.00 0.00 0.00 2.73
3628 4373 7.127012 TGAATTAATGATTGACGGGGTACTA 57.873 36.000 0.00 0.00 0.00 1.82
3629 4374 7.566569 TGAATTAATGATTGACGGGGTACTAA 58.433 34.615 0.00 0.00 0.00 2.24
3630 4375 8.215050 TGAATTAATGATTGACGGGGTACTAAT 58.785 33.333 0.00 0.00 0.00 1.73
3631 4376 8.990163 AATTAATGATTGACGGGGTACTAATT 57.010 30.769 0.00 0.00 0.00 1.40
3632 4377 8.617290 ATTAATGATTGACGGGGTACTAATTC 57.383 34.615 0.00 0.00 0.00 2.17
3633 4378 5.888982 ATGATTGACGGGGTACTAATTCT 57.111 39.130 0.00 0.00 0.00 2.40
3634 4379 5.018539 TGATTGACGGGGTACTAATTCTG 57.981 43.478 0.00 0.00 0.00 3.02
3635 4380 2.973694 TGACGGGGTACTAATTCTGC 57.026 50.000 0.00 0.00 0.00 4.26
3636 4381 2.463752 TGACGGGGTACTAATTCTGCT 58.536 47.619 0.00 0.00 0.00 4.24
3637 4382 2.835764 TGACGGGGTACTAATTCTGCTT 59.164 45.455 0.00 0.00 0.00 3.91
3638 4383 3.262405 TGACGGGGTACTAATTCTGCTTT 59.738 43.478 0.00 0.00 0.00 3.51
3639 4384 4.467082 TGACGGGGTACTAATTCTGCTTTA 59.533 41.667 0.00 0.00 0.00 1.85
3640 4385 5.129815 TGACGGGGTACTAATTCTGCTTTAT 59.870 40.000 0.00 0.00 0.00 1.40
3641 4386 5.365619 ACGGGGTACTAATTCTGCTTTATG 58.634 41.667 0.00 0.00 0.00 1.90
3642 4387 5.129815 ACGGGGTACTAATTCTGCTTTATGA 59.870 40.000 0.00 0.00 0.00 2.15
3643 4388 6.053005 CGGGGTACTAATTCTGCTTTATGAA 58.947 40.000 0.00 0.00 0.00 2.57
3644 4389 6.710744 CGGGGTACTAATTCTGCTTTATGAAT 59.289 38.462 0.00 0.00 34.75 2.57
3645 4390 7.228706 CGGGGTACTAATTCTGCTTTATGAATT 59.771 37.037 0.00 0.00 42.98 2.17
3646 4391 9.569122 GGGGTACTAATTCTGCTTTATGAATTA 57.431 33.333 0.00 0.00 41.40 1.40
3657 4402 9.617523 TCTGCTTTATGAATTATGATTGACAGA 57.382 29.630 0.00 0.00 0.00 3.41
3682 4427 0.179081 GGATCGGTTGCCTGGAGTAC 60.179 60.000 0.00 0.00 0.00 2.73
3687 4432 1.653151 GGTTGCCTGGAGTACGAATC 58.347 55.000 0.00 0.00 0.00 2.52
3696 4441 4.546570 CTGGAGTACGAATCGCATTCATA 58.453 43.478 1.15 0.00 39.22 2.15
3715 4544 2.182516 AGGAGATGGACCTTACAGGG 57.817 55.000 0.00 0.00 40.58 4.45
3776 4605 2.203394 CGGGATGATGCAAGGGGG 60.203 66.667 0.00 0.00 0.00 5.40
3813 4642 3.188786 GCGAGCGGCGATGTCTTT 61.189 61.111 12.98 0.00 44.57 2.52
3825 4654 2.715046 GATGTCTTTGTGATGCCCTCA 58.285 47.619 0.00 0.00 0.00 3.86
3855 4684 1.142097 GCTCGGCCAAGTAGTCCTC 59.858 63.158 2.24 0.00 0.00 3.71
4003 4832 1.077644 AAGATCAGGCTGCTGCTGG 60.078 57.895 15.64 7.98 39.59 4.85
4146 4975 0.531753 GGAAGAAGCAGGCGGAGATC 60.532 60.000 0.00 0.00 0.00 2.75
4228 5060 1.089920 CATCAAGCAGTAGTGGTGCC 58.910 55.000 2.37 0.00 42.24 5.01
4326 5161 4.985409 GTCTATAGTGCAGTGTCAATAGGC 59.015 45.833 3.69 1.06 0.00 3.93
4331 5166 1.134995 TGCAGTGTCAATAGGCGAGAG 60.135 52.381 0.00 0.00 0.00 3.20
4332 5167 1.804372 GCAGTGTCAATAGGCGAGAGG 60.804 57.143 0.00 0.00 0.00 3.69
4389 5224 5.351465 GGATACTGTGATTGGTTGTACTGTG 59.649 44.000 0.00 0.00 0.00 3.66
4390 5225 4.150897 ACTGTGATTGGTTGTACTGTGT 57.849 40.909 0.00 0.00 0.00 3.72
4410 5245 7.550551 ACTGTGTAATAGTGGAAATGTGATGAG 59.449 37.037 0.00 0.00 36.71 2.90
4470 5309 1.063616 CAAGCAGAATCCACATCAGCG 59.936 52.381 0.00 0.00 34.83 5.18
4489 5328 2.923605 GCGATGAAATGCCCACATATGC 60.924 50.000 1.58 0.00 34.62 3.14
4520 5359 8.616076 CCTCCATTCACTATTGTAAGATGTTTC 58.384 37.037 0.00 0.00 0.00 2.78
4528 5367 9.334693 CACTATTGTAAGATGTTTCAGCTTTTC 57.665 33.333 5.62 1.92 36.68 2.29
4534 5373 9.453572 TGTAAGATGTTTCAGCTTTTCTCATAT 57.546 29.630 5.62 0.00 36.68 1.78
4537 5376 8.571461 AGATGTTTCAGCTTTTCTCATATTCA 57.429 30.769 0.00 0.00 0.00 2.57
4597 5436 6.333416 TCATTTCAGTCTGTATGTAGTCTGC 58.667 40.000 13.61 0.00 34.98 4.26
4600 5439 5.506686 TCAGTCTGTATGTAGTCTGCATC 57.493 43.478 6.71 0.85 34.98 3.91
4601 5440 4.949856 TCAGTCTGTATGTAGTCTGCATCA 59.050 41.667 6.71 5.10 34.98 3.07
4610 5449 6.791887 ATGTAGTCTGCATCAAAATATCCG 57.208 37.500 0.00 0.00 0.00 4.18
4618 5457 7.800380 GTCTGCATCAAAATATCCGAAACATAG 59.200 37.037 0.00 0.00 0.00 2.23
4622 5461 9.546909 GCATCAAAATATCCGAAACATAGTATG 57.453 33.333 8.66 8.66 0.00 2.39
4698 5568 6.260271 GGGGTAAACAGCAGAAATAGTGTATC 59.740 42.308 0.00 0.00 0.00 2.24
4708 5578 7.665559 AGCAGAAATAGTGTATCAACCTTTCAA 59.334 33.333 0.00 0.00 30.37 2.69
4771 5673 5.928264 TCATCGCATCATCTGGTTAACATAG 59.072 40.000 8.10 5.41 0.00 2.23
4796 5698 5.685511 CGTAAGCTAGTTGCAAATTTGTTGT 59.314 36.000 19.03 5.13 45.94 3.32
4806 5708 5.164233 TGCAAATTTGTTGTTTTCGTCTCA 58.836 33.333 19.03 1.62 0.00 3.27
4820 5722 4.159377 TCGTCTCAATTTCAAATGCCAC 57.841 40.909 0.00 0.00 0.00 5.01
4846 5748 6.935208 GGGTCCAGTCATATAACCAGATAAAC 59.065 42.308 0.00 0.00 0.00 2.01
4850 5752 9.778741 TCCAGTCATATAACCAGATAAACAATC 57.221 33.333 0.00 0.00 34.52 2.67
4860 5762 3.947834 CAGATAAACAATCACTCCCACCC 59.052 47.826 0.00 0.00 37.03 4.61
4915 5817 0.172578 CGGTCGCAGAACCAGATGTA 59.827 55.000 1.37 0.00 44.71 2.29
4917 5819 1.204941 GGTCGCAGAACCAGATGTAGT 59.795 52.381 0.00 0.00 39.11 2.73
4918 5820 2.353803 GGTCGCAGAACCAGATGTAGTT 60.354 50.000 0.00 0.00 39.11 2.24
4919 5821 3.119245 GGTCGCAGAACCAGATGTAGTTA 60.119 47.826 0.00 0.00 39.11 2.24
5042 5944 1.804748 CCCGTCCGGAAAGAAGAAAAG 59.195 52.381 5.23 0.00 37.50 2.27
5044 5946 1.136336 CGTCCGGAAAGAAGAAAAGCG 60.136 52.381 5.23 0.00 0.00 4.68
5055 5957 3.871594 AGAAGAAAAGCGGATGAATACGG 59.128 43.478 0.00 0.00 33.88 4.02
5057 5959 3.869065 AGAAAAGCGGATGAATACGGAA 58.131 40.909 0.00 0.00 33.88 4.30
5151 10052 0.464373 ATAACCAGTGCAGCCCGATG 60.464 55.000 0.00 0.00 0.00 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 158 2.095008 GCCTACAAAGAAGCCTGAAAGC 60.095 50.000 0.00 0.00 0.00 3.51
283 294 6.540189 AGATCTGAGTCATTTTTACCCATTCG 59.460 38.462 0.00 0.00 0.00 3.34
343 354 6.828273 ACAAGGCTAGTACAATAATGCATCAA 59.172 34.615 0.00 0.00 0.00 2.57
380 397 6.945435 TGTAAAAATGGATTTAGCTGGTCAGA 59.055 34.615 0.00 0.00 0.00 3.27
407 427 1.710013 TCGTGAAGTCCGAATCTTGC 58.290 50.000 0.00 0.00 0.00 4.01
415 435 1.852895 GATCCGAATTCGTGAAGTCCG 59.147 52.381 25.10 8.43 37.74 4.79
423 443 2.159627 GCACAACAAGATCCGAATTCGT 59.840 45.455 25.10 8.91 37.74 3.85
431 451 5.331876 ACTACTAGAGCACAACAAGATCC 57.668 43.478 0.00 0.00 0.00 3.36
435 455 4.082190 TGCCTACTACTAGAGCACAACAAG 60.082 45.833 0.00 0.00 0.00 3.16
457 479 1.321805 TGAAATCCGCATTGCCCCTG 61.322 55.000 2.41 0.00 0.00 4.45
458 480 1.000233 TGAAATCCGCATTGCCCCT 60.000 52.632 2.41 0.00 0.00 4.79
460 482 0.817013 TTCTGAAATCCGCATTGCCC 59.183 50.000 2.41 0.00 0.00 5.36
462 484 4.236935 TCTTTTTCTGAAATCCGCATTGC 58.763 39.130 3.31 0.00 0.00 3.56
463 485 6.421801 ACTTTCTTTTTCTGAAATCCGCATTG 59.578 34.615 3.31 0.00 33.65 2.82
464 486 6.515832 ACTTTCTTTTTCTGAAATCCGCATT 58.484 32.000 3.31 0.00 33.65 3.56
465 487 6.089249 ACTTTCTTTTTCTGAAATCCGCAT 57.911 33.333 3.31 0.00 33.65 4.73
467 489 6.899114 TCTACTTTCTTTTTCTGAAATCCGC 58.101 36.000 3.31 0.00 33.65 5.54
468 490 7.522374 CCTCTACTTTCTTTTTCTGAAATCCG 58.478 38.462 3.31 0.00 33.65 4.18
469 491 7.309177 GCCTCTACTTTCTTTTTCTGAAATCC 58.691 38.462 3.31 0.00 33.65 3.01
470 492 7.309177 GGCCTCTACTTTCTTTTTCTGAAATC 58.691 38.462 3.31 0.00 33.65 2.17
523 547 7.240897 TGGATTATATTTTAGCTCTGGGCATT 58.759 34.615 0.74 0.00 44.79 3.56
568 592 4.142730 TGTGCCTGCAAAACAATGAAAAAC 60.143 37.500 0.00 0.00 0.00 2.43
574 598 5.866335 ATAATTGTGCCTGCAAAACAATG 57.134 34.783 17.32 0.00 42.24 2.82
578 602 6.544038 AGAAAATAATTGTGCCTGCAAAAC 57.456 33.333 0.00 0.00 31.63 2.43
581 605 5.851720 TCAAGAAAATAATTGTGCCTGCAA 58.148 33.333 0.00 0.00 0.00 4.08
586 610 8.031277 AGAGTGAATCAAGAAAATAATTGTGCC 58.969 33.333 0.00 0.00 0.00 5.01
604 629 6.378564 TCGGAATAAGACTGAAGAGAGTGAAT 59.621 38.462 0.00 0.00 0.00 2.57
605 630 5.710567 TCGGAATAAGACTGAAGAGAGTGAA 59.289 40.000 0.00 0.00 0.00 3.18
616 641 5.692204 AGCGACATATTTCGGAATAAGACTG 59.308 40.000 12.84 0.00 39.50 3.51
625 650 3.863424 GTGAGAAAGCGACATATTTCGGA 59.137 43.478 12.84 0.00 39.78 4.55
626 651 3.865745 AGTGAGAAAGCGACATATTTCGG 59.134 43.478 12.84 0.00 39.78 4.30
633 658 4.867047 CAGTGATAAGTGAGAAAGCGACAT 59.133 41.667 0.00 0.00 0.00 3.06
634 659 4.237724 CAGTGATAAGTGAGAAAGCGACA 58.762 43.478 0.00 0.00 0.00 4.35
673 698 8.950007 AAATGGTTGGGGTATAATAGTAATGG 57.050 34.615 0.00 0.00 0.00 3.16
705 759 2.554032 CTGCGATTAATGATTGGACCCC 59.446 50.000 0.00 0.00 0.00 4.95
706 760 3.476552 TCTGCGATTAATGATTGGACCC 58.523 45.455 0.00 0.00 0.00 4.46
707 761 4.816385 TCTTCTGCGATTAATGATTGGACC 59.184 41.667 0.00 0.00 0.00 4.46
708 762 5.991328 TCTTCTGCGATTAATGATTGGAC 57.009 39.130 0.00 0.00 0.00 4.02
709 763 8.675705 TTATTCTTCTGCGATTAATGATTGGA 57.324 30.769 0.00 0.00 0.00 3.53
710 764 9.903682 AATTATTCTTCTGCGATTAATGATTGG 57.096 29.630 0.00 0.00 0.00 3.16
784 1163 1.797320 TTCGAGGGGGATATTCCGTT 58.203 50.000 0.00 0.00 37.43 4.44
813 1192 3.942829 ACACAGAGAGAGAGAGAGACAG 58.057 50.000 0.00 0.00 0.00 3.51
815 1194 8.395633 GTTTATAACACAGAGAGAGAGAGAGAC 58.604 40.741 0.00 0.00 0.00 3.36
819 1198 7.406553 CGAGTTTATAACACAGAGAGAGAGAG 58.593 42.308 0.00 0.00 0.00 3.20
820 1199 6.316640 CCGAGTTTATAACACAGAGAGAGAGA 59.683 42.308 0.00 0.00 0.00 3.10
821 1200 6.491394 CCGAGTTTATAACACAGAGAGAGAG 58.509 44.000 0.00 0.00 0.00 3.20
822 1201 5.163642 GCCGAGTTTATAACACAGAGAGAGA 60.164 44.000 0.00 0.00 0.00 3.10
823 1202 5.038033 GCCGAGTTTATAACACAGAGAGAG 58.962 45.833 0.00 0.00 0.00 3.20
831 1210 1.134729 TCGGGGCCGAGTTTATAACAC 60.135 52.381 0.00 0.00 44.01 3.32
886 1286 0.030638 GTTGCGTGTGTGCTGGAATT 59.969 50.000 0.00 0.00 35.36 2.17
893 1293 1.741947 GCTTGTTGTTGCGTGTGTGC 61.742 55.000 0.00 0.00 0.00 4.57
911 1313 2.105960 AACGAACGAAGCTGCACTGC 62.106 55.000 1.02 0.00 0.00 4.40
913 1315 0.304705 CAAACGAACGAAGCTGCACT 59.695 50.000 1.02 0.00 0.00 4.40
914 1316 0.027586 ACAAACGAACGAAGCTGCAC 59.972 50.000 1.02 0.00 0.00 4.57
918 1320 1.283736 ACGAACAAACGAACGAAGCT 58.716 45.000 0.14 0.00 37.03 3.74
919 1321 2.024881 GAACGAACAAACGAACGAAGC 58.975 47.619 0.14 0.00 37.03 3.86
922 1324 1.267365 ACGAACGAACAAACGAACGA 58.733 45.000 0.14 0.00 38.05 3.85
924 1326 2.015133 CGAACGAACGAACAAACGAAC 58.985 47.619 0.14 0.00 37.03 3.95
925 1327 1.653114 ACGAACGAACGAACAAACGAA 59.347 42.857 11.97 0.00 37.03 3.85
926 1328 1.267365 ACGAACGAACGAACAAACGA 58.733 45.000 11.97 0.00 37.03 3.85
928 1330 2.543646 GCTACGAACGAACGAACAAAC 58.456 47.619 11.97 0.00 37.03 2.93
929 1331 1.187704 CGCTACGAACGAACGAACAAA 59.812 47.619 11.97 0.00 37.03 2.83
930 1332 0.771756 CGCTACGAACGAACGAACAA 59.228 50.000 11.97 0.00 37.03 2.83
931 1333 0.041400 TCGCTACGAACGAACGAACA 60.041 50.000 11.97 0.00 36.44 3.18
933 1335 0.453282 CCTCGCTACGAACGAACGAA 60.453 55.000 11.97 0.00 39.39 3.85
934 1336 1.133253 CCTCGCTACGAACGAACGA 59.867 57.895 11.97 6.10 39.39 3.85
935 1337 1.154338 ACCTCGCTACGAACGAACG 60.154 57.895 0.14 0.00 39.39 3.95
936 1338 0.110056 TCACCTCGCTACGAACGAAC 60.110 55.000 0.14 0.00 39.39 3.95
937 1339 0.592637 TTCACCTCGCTACGAACGAA 59.407 50.000 0.14 0.00 39.39 3.85
938 1340 0.592637 TTTCACCTCGCTACGAACGA 59.407 50.000 0.14 0.00 34.74 3.85
939 1341 0.982673 CTTTCACCTCGCTACGAACG 59.017 55.000 0.00 0.00 34.74 3.95
940 1342 2.342910 TCTTTCACCTCGCTACGAAC 57.657 50.000 0.00 0.00 34.74 3.95
941 1343 3.192844 AGAATCTTTCACCTCGCTACGAA 59.807 43.478 0.00 0.00 34.74 3.85
942 1344 2.753452 AGAATCTTTCACCTCGCTACGA 59.247 45.455 0.00 0.00 0.00 3.43
943 1345 2.854777 CAGAATCTTTCACCTCGCTACG 59.145 50.000 0.00 0.00 0.00 3.51
944 1346 2.605366 GCAGAATCTTTCACCTCGCTAC 59.395 50.000 0.00 0.00 0.00 3.58
945 1347 2.497675 AGCAGAATCTTTCACCTCGCTA 59.502 45.455 0.00 0.00 0.00 4.26
946 1348 1.277557 AGCAGAATCTTTCACCTCGCT 59.722 47.619 0.00 0.00 0.00 4.93
947 1349 1.731720 AGCAGAATCTTTCACCTCGC 58.268 50.000 0.00 0.00 0.00 5.03
948 1350 4.116747 ACTAGCAGAATCTTTCACCTCG 57.883 45.455 0.00 0.00 0.00 4.63
949 1351 5.123027 CCAAACTAGCAGAATCTTTCACCTC 59.877 44.000 0.00 0.00 0.00 3.85
950 1352 5.006386 CCAAACTAGCAGAATCTTTCACCT 58.994 41.667 0.00 0.00 0.00 4.00
951 1353 4.762251 ACCAAACTAGCAGAATCTTTCACC 59.238 41.667 0.00 0.00 0.00 4.02
952 1354 5.948992 ACCAAACTAGCAGAATCTTTCAC 57.051 39.130 0.00 0.00 0.00 3.18
953 1355 6.772716 AGAAACCAAACTAGCAGAATCTTTCA 59.227 34.615 0.00 0.00 0.00 2.69
955 1357 6.073003 CGAGAAACCAAACTAGCAGAATCTTT 60.073 38.462 0.00 0.00 0.00 2.52
969 1371 2.198406 CTCACGACACGAGAAACCAAA 58.802 47.619 0.00 0.00 31.84 3.28
972 1374 0.666577 CCCTCACGACACGAGAAACC 60.667 60.000 0.00 0.00 31.84 3.27
974 1376 0.031585 CACCCTCACGACACGAGAAA 59.968 55.000 0.00 0.00 31.84 2.52
1121 1532 0.832135 TGTGAGGGTGGGTGAGTCTC 60.832 60.000 0.00 0.00 0.00 3.36
1123 1534 0.035458 CTTGTGAGGGTGGGTGAGTC 59.965 60.000 0.00 0.00 0.00 3.36
1124 1535 2.056906 GCTTGTGAGGGTGGGTGAGT 62.057 60.000 0.00 0.00 0.00 3.41
1126 1537 1.352622 AAGCTTGTGAGGGTGGGTGA 61.353 55.000 0.00 0.00 0.00 4.02
1128 1539 0.178990 GAAAGCTTGTGAGGGTGGGT 60.179 55.000 0.00 0.00 0.00 4.51
1137 1550 1.532868 CCCTCACGAAGAAAGCTTGTG 59.467 52.381 0.00 3.36 35.92 3.33
1138 1551 1.141053 ACCCTCACGAAGAAAGCTTGT 59.859 47.619 0.00 0.00 33.61 3.16
1146 1559 3.695830 AGCAAATAACCCTCACGAAGA 57.304 42.857 0.00 0.00 0.00 2.87
1150 1563 6.345920 CTTTACTAGCAAATAACCCTCACG 57.654 41.667 0.00 0.00 0.00 4.35
1165 1578 6.463995 AAGATCAGACCAGAGCTTTACTAG 57.536 41.667 0.00 0.00 41.07 2.57
1208 1654 6.014242 ACAACTCAGTCACTTCCTCATATTCA 60.014 38.462 0.00 0.00 0.00 2.57
1215 1661 3.648009 CTGACAACTCAGTCACTTCCTC 58.352 50.000 0.00 0.00 43.18 3.71
1225 1671 4.576053 TGAACCAATTCACTGACAACTCAG 59.424 41.667 0.00 0.00 40.01 3.35
1232 1684 2.227388 CCAGCTGAACCAATTCACTGAC 59.773 50.000 17.39 0.00 41.52 3.51
1233 1685 2.158623 ACCAGCTGAACCAATTCACTGA 60.159 45.455 17.39 0.00 41.52 3.41
1235 1687 2.664402 ACCAGCTGAACCAATTCACT 57.336 45.000 17.39 0.00 40.01 3.41
1242 1694 1.064758 AGTGTTGAACCAGCTGAACCA 60.065 47.619 17.39 6.54 0.00 3.67
1244 1696 2.682856 TCAAGTGTTGAACCAGCTGAAC 59.317 45.455 17.39 12.15 36.59 3.18
1256 1708 8.656849 AGCTATTTCGTACTAATTCAAGTGTTG 58.343 33.333 0.00 0.00 0.00 3.33
1258 1710 8.773404 AAGCTATTTCGTACTAATTCAAGTGT 57.227 30.769 0.00 0.00 0.00 3.55
1266 1718 8.665685 CCAACAAAGAAGCTATTTCGTACTAAT 58.334 33.333 0.00 0.00 40.86 1.73
1269 1721 5.411669 CCCAACAAAGAAGCTATTTCGTACT 59.588 40.000 0.00 0.00 40.86 2.73
1270 1722 5.628134 CCCAACAAAGAAGCTATTTCGTAC 58.372 41.667 0.00 0.00 40.86 3.67
1275 1727 2.890945 ACGCCCAACAAAGAAGCTATTT 59.109 40.909 0.00 0.00 0.00 1.40
1276 1728 2.228822 CACGCCCAACAAAGAAGCTATT 59.771 45.455 0.00 0.00 0.00 1.73
1277 1729 1.812571 CACGCCCAACAAAGAAGCTAT 59.187 47.619 0.00 0.00 0.00 2.97
1278 1730 1.202710 TCACGCCCAACAAAGAAGCTA 60.203 47.619 0.00 0.00 0.00 3.32
1279 1731 0.465460 TCACGCCCAACAAAGAAGCT 60.465 50.000 0.00 0.00 0.00 3.74
1280 1732 0.383949 TTCACGCCCAACAAAGAAGC 59.616 50.000 0.00 0.00 0.00 3.86
1281 1733 1.403679 TGTTCACGCCCAACAAAGAAG 59.596 47.619 0.00 0.00 30.67 2.85
1282 1734 1.464734 TGTTCACGCCCAACAAAGAA 58.535 45.000 0.00 0.00 30.67 2.52
1283 1735 1.464734 TTGTTCACGCCCAACAAAGA 58.535 45.000 5.03 0.00 40.08 2.52
1284 1736 2.285827 TTTGTTCACGCCCAACAAAG 57.714 45.000 13.14 0.00 44.82 2.77
1286 1738 2.028130 AGATTTGTTCACGCCCAACAA 58.972 42.857 3.68 3.68 41.05 2.83
1287 1739 1.336440 CAGATTTGTTCACGCCCAACA 59.664 47.619 0.00 0.00 31.76 3.33
1288 1740 1.336755 ACAGATTTGTTCACGCCCAAC 59.663 47.619 0.00 0.00 32.28 3.77
1289 1741 1.336440 CACAGATTTGTTCACGCCCAA 59.664 47.619 0.00 0.00 34.62 4.12
1290 1742 0.950836 CACAGATTTGTTCACGCCCA 59.049 50.000 0.00 0.00 34.62 5.36
1291 1743 1.197721 CTCACAGATTTGTTCACGCCC 59.802 52.381 0.00 0.00 34.62 6.13
1292 1744 1.873591 ACTCACAGATTTGTTCACGCC 59.126 47.619 0.00 0.00 34.62 5.68
1293 1745 3.291585 CAACTCACAGATTTGTTCACGC 58.708 45.455 0.00 0.00 34.62 5.34
1294 1746 3.242706 TGCAACTCACAGATTTGTTCACG 60.243 43.478 0.00 0.00 34.62 4.35
1295 1747 4.291540 TGCAACTCACAGATTTGTTCAC 57.708 40.909 0.00 0.00 34.62 3.18
1296 1748 5.518848 AATGCAACTCACAGATTTGTTCA 57.481 34.783 0.00 0.00 34.62 3.18
1335 1787 1.406539 GTCAGGGCAATGCAATTCGAT 59.593 47.619 7.79 0.00 31.22 3.59
1337 1789 0.527113 TGTCAGGGCAATGCAATTCG 59.473 50.000 7.79 0.00 31.22 3.34
1338 1790 1.820519 TCTGTCAGGGCAATGCAATTC 59.179 47.619 7.79 0.00 31.22 2.17
1343 1795 1.820519 TGATTTCTGTCAGGGCAATGC 59.179 47.619 0.00 0.00 0.00 3.56
1344 1796 4.730949 AATGATTTCTGTCAGGGCAATG 57.269 40.909 0.00 0.00 0.00 2.82
1345 1797 5.750352 AAAATGATTTCTGTCAGGGCAAT 57.250 34.783 0.00 0.00 0.00 3.56
1346 1798 5.549742 AAAAATGATTTCTGTCAGGGCAA 57.450 34.783 0.00 0.00 0.00 4.52
1381 1857 4.877823 CAGCTTAATCACCATCAAGCAGTA 59.122 41.667 7.79 0.00 44.59 2.74
1387 1863 3.737559 ACCCAGCTTAATCACCATCAA 57.262 42.857 0.00 0.00 0.00 2.57
1409 1885 6.698008 TTAAATTGTGAGAGCATACATGGG 57.302 37.500 0.00 0.00 0.00 4.00
1427 1903 8.539544 CCCACCCAAAATCAGTCTAAATTAAAT 58.460 33.333 0.00 0.00 0.00 1.40
1441 1917 0.544120 TGGAAGGCCCACCCAAAATC 60.544 55.000 12.44 0.00 40.82 2.17
1468 1944 0.539051 ACCCAGAGATGTAGCTGCAC 59.461 55.000 6.66 1.31 0.00 4.57
1563 2080 5.023452 ACACTAATCATCCACTGTCCTGTA 58.977 41.667 0.00 0.00 0.00 2.74
1588 2112 9.886132 ATACATCAGAAACGTCCTAAATTAAGT 57.114 29.630 0.00 0.00 0.00 2.24
1613 2137 3.504906 CACAACAATGACCTGCAGAAGAT 59.495 43.478 17.39 0.00 0.00 2.40
1615 2139 2.880268 TCACAACAATGACCTGCAGAAG 59.120 45.455 17.39 1.02 0.00 2.85
1659 2190 1.071471 CTTGGCACCGTGGAACTCT 59.929 57.895 0.00 0.00 31.75 3.24
1711 2242 5.127682 AGCCATGGCCTAAACTAGAAAAATG 59.872 40.000 33.14 0.00 43.17 2.32
1712 2243 5.272402 AGCCATGGCCTAAACTAGAAAAAT 58.728 37.500 33.14 5.56 43.17 1.82
1721 2252 3.588955 CTTTGAAAGCCATGGCCTAAAC 58.411 45.455 33.14 19.29 43.17 2.01
1722 2253 2.566724 CCTTTGAAAGCCATGGCCTAAA 59.433 45.455 33.14 24.11 43.17 1.85
1725 2256 0.114954 TCCTTTGAAAGCCATGGCCT 59.885 50.000 33.14 19.03 43.17 5.19
1727 2258 1.260544 AGTCCTTTGAAAGCCATGGC 58.739 50.000 30.12 30.12 42.33 4.40
1728 2259 4.082125 ACTAAGTCCTTTGAAAGCCATGG 58.918 43.478 7.63 7.63 0.00 3.66
1729 2260 5.712152 AACTAAGTCCTTTGAAAGCCATG 57.288 39.130 0.00 0.00 0.00 3.66
1730 2261 5.833131 TGAAACTAAGTCCTTTGAAAGCCAT 59.167 36.000 0.00 0.00 0.00 4.40
1731 2262 5.067283 GTGAAACTAAGTCCTTTGAAAGCCA 59.933 40.000 0.00 0.00 0.00 4.75
1732 2263 5.520632 GTGAAACTAAGTCCTTTGAAAGCC 58.479 41.667 0.00 0.00 0.00 4.35
1749 2280 4.207019 CGCATTTCCTTTTCACAGTGAAAC 59.793 41.667 25.46 12.20 45.03 2.78
1750 2281 4.097135 TCGCATTTCCTTTTCACAGTGAAA 59.903 37.500 22.53 22.53 43.84 2.69
1751 2282 3.629855 TCGCATTTCCTTTTCACAGTGAA 59.370 39.130 12.24 12.24 34.03 3.18
1752 2283 3.210227 TCGCATTTCCTTTTCACAGTGA 58.790 40.909 0.00 0.00 0.00 3.41
1753 2284 3.624326 TCGCATTTCCTTTTCACAGTG 57.376 42.857 0.00 0.00 0.00 3.66
1754 2285 4.647424 TTTCGCATTTCCTTTTCACAGT 57.353 36.364 0.00 0.00 0.00 3.55
1755 2286 7.028962 TCATATTTCGCATTTCCTTTTCACAG 58.971 34.615 0.00 0.00 0.00 3.66
1756 2287 6.918626 TCATATTTCGCATTTCCTTTTCACA 58.081 32.000 0.00 0.00 0.00 3.58
1757 2288 7.328249 TGTTCATATTTCGCATTTCCTTTTCAC 59.672 33.333 0.00 0.00 0.00 3.18
1758 2289 7.328249 GTGTTCATATTTCGCATTTCCTTTTCA 59.672 33.333 0.00 0.00 0.00 2.69
1759 2290 7.201435 GGTGTTCATATTTCGCATTTCCTTTTC 60.201 37.037 0.00 0.00 0.00 2.29
1760 2291 6.589907 GGTGTTCATATTTCGCATTTCCTTTT 59.410 34.615 0.00 0.00 0.00 2.27
1761 2292 6.099341 GGTGTTCATATTTCGCATTTCCTTT 58.901 36.000 0.00 0.00 0.00 3.11
1762 2293 5.650543 GGTGTTCATATTTCGCATTTCCTT 58.349 37.500 0.00 0.00 0.00 3.36
1763 2294 4.201910 CGGTGTTCATATTTCGCATTTCCT 60.202 41.667 0.00 0.00 0.00 3.36
1764 2295 4.035017 CGGTGTTCATATTTCGCATTTCC 58.965 43.478 0.00 0.00 0.00 3.13
1765 2296 3.482110 GCGGTGTTCATATTTCGCATTTC 59.518 43.478 0.00 0.00 42.27 2.17
1766 2297 3.434637 GCGGTGTTCATATTTCGCATTT 58.565 40.909 0.00 0.00 42.27 2.32
1767 2298 2.223479 GGCGGTGTTCATATTTCGCATT 60.223 45.455 7.76 0.00 44.14 3.56
1768 2299 1.333619 GGCGGTGTTCATATTTCGCAT 59.666 47.619 7.76 0.00 44.14 4.73
1769 2300 0.730265 GGCGGTGTTCATATTTCGCA 59.270 50.000 7.76 0.00 44.14 5.10
1770 2301 0.730265 TGGCGGTGTTCATATTTCGC 59.270 50.000 0.00 0.00 42.02 4.70
1771 2302 3.807622 ACTATGGCGGTGTTCATATTTCG 59.192 43.478 0.00 0.00 0.00 3.46
1772 2303 5.751243 AACTATGGCGGTGTTCATATTTC 57.249 39.130 0.00 0.00 0.00 2.17
1773 2304 6.071616 ACAAAACTATGGCGGTGTTCATATTT 60.072 34.615 0.00 0.00 0.00 1.40
1774 2305 5.417580 ACAAAACTATGGCGGTGTTCATATT 59.582 36.000 0.00 0.00 0.00 1.28
1775 2306 4.947388 ACAAAACTATGGCGGTGTTCATAT 59.053 37.500 0.00 0.00 0.00 1.78
1776 2307 4.328536 ACAAAACTATGGCGGTGTTCATA 58.671 39.130 0.00 0.00 0.00 2.15
1777 2308 3.153919 ACAAAACTATGGCGGTGTTCAT 58.846 40.909 0.00 0.00 0.00 2.57
1778 2309 2.550606 GACAAAACTATGGCGGTGTTCA 59.449 45.455 0.00 0.00 0.00 3.18
1779 2310 2.812011 AGACAAAACTATGGCGGTGTTC 59.188 45.455 0.00 0.00 31.91 3.18
1780 2311 2.858745 AGACAAAACTATGGCGGTGTT 58.141 42.857 0.00 0.00 31.91 3.32
1781 2312 2.561478 AGACAAAACTATGGCGGTGT 57.439 45.000 0.00 0.00 31.91 4.16
1782 2313 2.159707 CGAAGACAAAACTATGGCGGTG 60.160 50.000 0.00 0.00 31.91 4.94
1783 2314 2.073816 CGAAGACAAAACTATGGCGGT 58.926 47.619 0.00 0.00 31.91 5.68
1784 2315 1.396996 CCGAAGACAAAACTATGGCGG 59.603 52.381 0.00 0.00 31.91 6.13
1785 2316 2.343101 TCCGAAGACAAAACTATGGCG 58.657 47.619 0.00 0.00 31.91 5.69
1786 2317 7.724305 TTATATCCGAAGACAAAACTATGGC 57.276 36.000 0.00 0.00 0.00 4.40
1787 2318 9.104965 TGTTTATATCCGAAGACAAAACTATGG 57.895 33.333 0.00 0.00 0.00 2.74
1790 2321 9.715121 ACTTGTTTATATCCGAAGACAAAACTA 57.285 29.630 0.00 0.00 0.00 2.24
1791 2322 8.504005 CACTTGTTTATATCCGAAGACAAAACT 58.496 33.333 0.00 0.00 0.00 2.66
1792 2323 7.270579 GCACTTGTTTATATCCGAAGACAAAAC 59.729 37.037 0.00 0.00 0.00 2.43
1793 2324 7.302524 GCACTTGTTTATATCCGAAGACAAAA 58.697 34.615 0.00 0.00 0.00 2.44
1794 2325 6.128117 GGCACTTGTTTATATCCGAAGACAAA 60.128 38.462 0.00 0.00 0.00 2.83
1795 2326 5.353123 GGCACTTGTTTATATCCGAAGACAA 59.647 40.000 0.00 0.00 0.00 3.18
1796 2327 4.873827 GGCACTTGTTTATATCCGAAGACA 59.126 41.667 0.00 0.00 0.00 3.41
1797 2328 4.873827 TGGCACTTGTTTATATCCGAAGAC 59.126 41.667 0.00 0.00 0.00 3.01
1802 2333 3.242608 CCGTTGGCACTTGTTTATATCCG 60.243 47.826 0.00 0.00 0.00 4.18
1845 2376 9.606631 TGGTTCATACAAGCATTTAAAGTTTTT 57.393 25.926 0.00 0.00 0.00 1.94
1846 2377 9.777297 ATGGTTCATACAAGCATTTAAAGTTTT 57.223 25.926 0.00 0.00 35.07 2.43
1847 2378 9.206870 CATGGTTCATACAAGCATTTAAAGTTT 57.793 29.630 0.00 0.00 36.35 2.66
1848 2379 8.584157 TCATGGTTCATACAAGCATTTAAAGTT 58.416 29.630 0.00 0.00 36.35 2.66
1865 2396 3.325870 CTTACGAGCAACTCATGGTTCA 58.674 45.455 0.00 0.00 40.59 3.18
1875 2406 6.040878 ACATGTAGTATTCCTTACGAGCAAC 58.959 40.000 0.00 0.00 35.84 4.17
1903 2434 8.885693 AAGAATCTCCTAATGCCTAAAACTTT 57.114 30.769 0.00 0.00 0.00 2.66
1928 2459 8.328146 CGATCATAAGCTTGAATTACGAAAAGA 58.672 33.333 9.86 0.00 0.00 2.52
1934 2474 6.417930 TGAGTCGATCATAAGCTTGAATTACG 59.582 38.462 9.86 8.15 31.12 3.18
1973 2513 9.846248 AAGTAATATGATTGCAGTGTTTTCTTC 57.154 29.630 0.00 0.00 0.00 2.87
2007 2548 5.412594 TCAAATTCATACAGCTGGAACACTC 59.587 40.000 19.93 0.00 0.00 3.51
2012 2553 4.574892 TCGTCAAATTCATACAGCTGGAA 58.425 39.130 19.93 12.36 0.00 3.53
2027 2576 7.095649 GGATTGATCATCGTATCATTCGTCAAA 60.096 37.037 0.00 0.00 37.23 2.69
2032 2581 6.898912 ATGGATTGATCATCGTATCATTCG 57.101 37.500 0.00 0.00 37.23 3.34
2041 2590 5.737860 TCTCCCATTATGGATTGATCATCG 58.262 41.667 13.63 0.00 40.96 3.84
2059 2608 2.190578 CCGCACTCCCAATCTCCC 59.809 66.667 0.00 0.00 0.00 4.30
2061 2610 0.179000 ATCACCGCACTCCCAATCTC 59.821 55.000 0.00 0.00 0.00 2.75
2063 2612 1.154205 CGATCACCGCACTCCCAATC 61.154 60.000 0.00 0.00 0.00 2.67
2064 2613 1.153369 CGATCACCGCACTCCCAAT 60.153 57.895 0.00 0.00 0.00 3.16
2066 2615 2.107041 AAACGATCACCGCACTCCCA 62.107 55.000 0.00 0.00 43.32 4.37
2067 2616 1.359459 GAAACGATCACCGCACTCCC 61.359 60.000 0.00 0.00 43.32 4.30
2068 2617 1.683790 CGAAACGATCACCGCACTCC 61.684 60.000 0.00 0.00 43.32 3.85
2082 2631 3.865745 AGATCATGTGGTTCGATCGAAAC 59.134 43.478 33.58 33.58 40.39 2.78
2086 2635 1.524355 GCAGATCATGTGGTTCGATCG 59.476 52.381 9.36 9.36 40.39 3.69
2109 2658 6.238103 CGGTTGTAAGCATAAATAGGACACAG 60.238 42.308 0.00 0.00 0.00 3.66
2110 2659 5.583061 CGGTTGTAAGCATAAATAGGACACA 59.417 40.000 0.00 0.00 0.00 3.72
2140 2696 1.371467 TGGAAAGCTGGGAAGGATGA 58.629 50.000 0.00 0.00 0.00 2.92
2148 2705 0.038744 AGTGGACATGGAAAGCTGGG 59.961 55.000 0.00 0.00 0.00 4.45
2228 2785 5.515797 CATGAATGATGTCAGGCTTGAAT 57.484 39.130 0.00 0.00 34.49 2.57
2298 2855 5.192522 ACCACCAGAGGATAAATGATCAGTT 59.807 40.000 13.58 13.58 36.12 3.16
2334 2891 4.154918 GGAAATGGAGCAGAGTGTTACTTG 59.845 45.833 0.00 0.00 0.00 3.16
2356 2933 1.461268 AAGGGCCCCAAAAACCTGG 60.461 57.895 21.43 0.00 36.10 4.45
2547 3144 1.750193 TCGTGGGGCATTCTGAATTC 58.250 50.000 0.00 0.00 0.00 2.17
2654 3255 8.174757 ACTATTCCATAAACCTTAACCCAGTTT 58.825 33.333 0.00 0.00 37.47 2.66
2655 3256 7.705700 ACTATTCCATAAACCTTAACCCAGTT 58.294 34.615 0.00 0.00 0.00 3.16
2656 3257 7.280044 ACTATTCCATAAACCTTAACCCAGT 57.720 36.000 0.00 0.00 0.00 4.00
2657 3258 9.117183 GTTACTATTCCATAAACCTTAACCCAG 57.883 37.037 0.00 0.00 0.00 4.45
2659 3260 9.636789 ATGTTACTATTCCATAAACCTTAACCC 57.363 33.333 0.00 0.00 0.00 4.11
2816 3447 2.808202 CGGCTATTCACTATGGCAAGCT 60.808 50.000 0.00 0.00 42.13 3.74
2818 3449 1.532868 GCGGCTATTCACTATGGCAAG 59.467 52.381 0.00 0.00 42.13 4.01
2822 3453 0.317160 TCGGCGGCTATTCACTATGG 59.683 55.000 7.21 0.00 0.00 2.74
2823 3454 2.148916 TTCGGCGGCTATTCACTATG 57.851 50.000 7.21 0.00 0.00 2.23
2824 3455 2.299013 TCATTCGGCGGCTATTCACTAT 59.701 45.455 7.21 0.00 0.00 2.12
2825 3456 1.684450 TCATTCGGCGGCTATTCACTA 59.316 47.619 7.21 0.00 0.00 2.74
2827 3458 1.512926 ATCATTCGGCGGCTATTCAC 58.487 50.000 7.21 0.00 0.00 3.18
2828 3459 3.195610 AGATATCATTCGGCGGCTATTCA 59.804 43.478 7.21 0.00 0.00 2.57
2829 3460 3.786635 AGATATCATTCGGCGGCTATTC 58.213 45.455 7.21 0.00 0.00 1.75
2830 3461 3.895232 AGATATCATTCGGCGGCTATT 57.105 42.857 7.21 0.00 0.00 1.73
2859 3496 7.175797 TGTATATCTCGGAATGTATCTGGAGT 58.824 38.462 0.00 0.00 34.95 3.85
2875 3512 6.148480 CCACAAGCCAGCTAAATGTATATCTC 59.852 42.308 0.00 0.00 0.00 2.75
2951 3588 6.090129 TGAAAGTTTGAGTGTTTGCAGTAAC 58.910 36.000 0.00 0.00 0.00 2.50
2974 3611 7.326789 GTGAATCAGTGTTATTTTGGTCACATG 59.673 37.037 0.00 0.00 32.43 3.21
2986 3623 2.578021 AGCAGGGGTGAATCAGTGTTAT 59.422 45.455 0.00 0.00 0.00 1.89
2987 3624 1.985159 AGCAGGGGTGAATCAGTGTTA 59.015 47.619 0.00 0.00 0.00 2.41
2988 3625 0.773644 AGCAGGGGTGAATCAGTGTT 59.226 50.000 0.00 0.00 0.00 3.32
2989 3626 0.037303 CAGCAGGGGTGAATCAGTGT 59.963 55.000 0.00 0.00 32.22 3.55
2998 3635 0.327924 TGTGGATAACAGCAGGGGTG 59.672 55.000 0.00 0.00 33.78 4.61
3188 3909 4.034048 CCGGTTAGCTGAACAATGATGTAC 59.966 45.833 0.00 0.00 39.40 2.90
3310 4031 5.047802 ACCTTGCACATAACATTCAAGAAGG 60.048 40.000 0.00 0.00 37.03 3.46
3328 4054 3.191371 CAGTTAATCTCAACCCACCTTGC 59.809 47.826 0.00 0.00 0.00 4.01
3333 4059 4.819630 TGTCAACAGTTAATCTCAACCCAC 59.180 41.667 0.00 0.00 0.00 4.61
3335 4061 5.063880 AGTGTCAACAGTTAATCTCAACCC 58.936 41.667 0.00 0.00 0.00 4.11
3337 4063 6.907212 CACAAGTGTCAACAGTTAATCTCAAC 59.093 38.462 3.02 0.00 37.41 3.18
3345 4071 4.757657 ACACAACACAAGTGTCAACAGTTA 59.242 37.500 6.28 0.00 46.57 2.24
3397 4126 4.214545 ACGTGAATTATCAACGGCTTTTCA 59.785 37.500 0.00 0.00 37.30 2.69
3403 4132 1.005347 CCGACGTGAATTATCAACGGC 60.005 52.381 0.00 0.00 39.87 5.68
3436 4165 7.693969 TTTCAGAAAATCCAGATTCTTCTCC 57.306 36.000 11.53 0.00 33.73 3.71
3462 4191 1.627943 CGCGAGAAGATTGCTCACG 59.372 57.895 0.00 0.00 35.99 4.35
3472 4201 1.525784 CGAATCACAAAGCGCGAGAAG 60.526 52.381 12.10 0.00 0.00 2.85
3476 4205 1.586578 GATACGAATCACAAAGCGCGA 59.413 47.619 12.10 0.00 31.93 5.87
3477 4206 1.323235 TGATACGAATCACAAAGCGCG 59.677 47.619 0.00 0.00 37.20 6.86
3478 4207 3.242413 ACATGATACGAATCACAAAGCGC 60.242 43.478 0.00 0.00 44.79 5.92
3480 4209 8.575454 GTTAAAACATGATACGAATCACAAAGC 58.425 33.333 0.00 0.00 44.79 3.51
3481 4210 9.605955 TGTTAAAACATGATACGAATCACAAAG 57.394 29.630 0.00 0.00 44.79 2.77
3483 4212 9.605955 CTTGTTAAAACATGATACGAATCACAA 57.394 29.630 0.00 0.00 44.79 3.33
3484 4213 7.748683 GCTTGTTAAAACATGATACGAATCACA 59.251 33.333 0.00 0.00 44.79 3.58
3485 4214 7.045612 CGCTTGTTAAAACATGATACGAATCAC 60.046 37.037 0.00 0.00 44.79 3.06
3486 4215 6.958752 CGCTTGTTAAAACATGATACGAATCA 59.041 34.615 0.00 0.00 46.01 2.57
3487 4216 6.959311 ACGCTTGTTAAAACATGATACGAATC 59.041 34.615 0.00 0.00 38.95 2.52
3489 4218 6.230849 ACGCTTGTTAAAACATGATACGAA 57.769 33.333 0.00 0.00 38.95 3.85
3491 4220 4.717299 CGACGCTTGTTAAAACATGATACG 59.283 41.667 0.00 8.52 38.95 3.06
3494 4223 4.669197 GCTCGACGCTTGTTAAAACATGAT 60.669 41.667 0.00 0.00 38.95 2.45
3513 4258 4.288670 TCTAACAACGGATAGAAGCTCG 57.711 45.455 0.00 0.00 0.00 5.03
3514 4259 8.819643 ATTTATCTAACAACGGATAGAAGCTC 57.180 34.615 0.00 0.00 32.90 4.09
3523 4268 8.362639 GGGTAGTGATATTTATCTAACAACGGA 58.637 37.037 0.00 0.00 33.88 4.69
3528 4273 9.209048 ACACAGGGTAGTGATATTTATCTAACA 57.791 33.333 0.57 0.00 42.05 2.41
3536 4281 6.294508 GCACAAAACACAGGGTAGTGATATTT 60.295 38.462 7.05 0.00 42.05 1.40
3538 4283 4.700213 GCACAAAACACAGGGTAGTGATAT 59.300 41.667 7.05 0.00 42.05 1.63
3544 4289 1.880027 GAGGCACAAAACACAGGGTAG 59.120 52.381 0.00 0.00 0.00 3.18
3546 4291 0.033601 TGAGGCACAAAACACAGGGT 60.034 50.000 0.00 0.00 0.00 4.34
3551 4296 4.065088 TCATAGAGTGAGGCACAAAACAC 58.935 43.478 0.00 0.00 36.74 3.32
3563 4308 5.645067 CCAAAACATGAAGCTCATAGAGTGA 59.355 40.000 0.00 0.00 34.28 3.41
3568 4313 4.157289 AGTGCCAAAACATGAAGCTCATAG 59.843 41.667 0.00 0.00 34.28 2.23
3570 4315 2.895404 AGTGCCAAAACATGAAGCTCAT 59.105 40.909 0.00 0.00 37.65 2.90
3571 4316 2.309613 AGTGCCAAAACATGAAGCTCA 58.690 42.857 0.00 0.00 0.00 4.26
3573 4318 5.244626 AGAATTAGTGCCAAAACATGAAGCT 59.755 36.000 0.00 0.00 0.00 3.74
3575 4320 5.346822 GCAGAATTAGTGCCAAAACATGAAG 59.653 40.000 0.00 0.00 34.67 3.02
3576 4321 5.010922 AGCAGAATTAGTGCCAAAACATGAA 59.989 36.000 0.00 0.00 42.24 2.57
3578 4323 4.813027 AGCAGAATTAGTGCCAAAACATG 58.187 39.130 8.34 0.00 42.24 3.21
3579 4324 5.010922 TGAAGCAGAATTAGTGCCAAAACAT 59.989 36.000 8.34 0.00 42.24 2.71
3581 4326 4.870363 TGAAGCAGAATTAGTGCCAAAAC 58.130 39.130 8.34 0.00 42.24 2.43
3582 4327 5.243507 TCATGAAGCAGAATTAGTGCCAAAA 59.756 36.000 8.34 0.00 42.24 2.44
3583 4328 4.766373 TCATGAAGCAGAATTAGTGCCAAA 59.234 37.500 8.34 0.00 42.24 3.28
3587 4332 8.965172 CATTAATTCATGAAGCAGAATTAGTGC 58.035 33.333 14.54 4.41 43.54 4.40
3606 4351 8.990163 AATTAGTACCCCGTCAATCATTAATT 57.010 30.769 0.00 0.00 0.00 1.40
3607 4352 8.437575 AGAATTAGTACCCCGTCAATCATTAAT 58.562 33.333 0.00 0.00 0.00 1.40
3609 4354 7.214381 CAGAATTAGTACCCCGTCAATCATTA 58.786 38.462 0.00 0.00 0.00 1.90
3611 4356 5.611374 CAGAATTAGTACCCCGTCAATCAT 58.389 41.667 0.00 0.00 0.00 2.45
3612 4357 4.682320 GCAGAATTAGTACCCCGTCAATCA 60.682 45.833 0.00 0.00 0.00 2.57
3613 4358 3.808174 GCAGAATTAGTACCCCGTCAATC 59.192 47.826 0.00 0.00 0.00 2.67
3614 4359 3.454812 AGCAGAATTAGTACCCCGTCAAT 59.545 43.478 0.00 0.00 0.00 2.57
3615 4360 2.835764 AGCAGAATTAGTACCCCGTCAA 59.164 45.455 0.00 0.00 0.00 3.18
3616 4361 2.463752 AGCAGAATTAGTACCCCGTCA 58.536 47.619 0.00 0.00 0.00 4.35
3617 4362 3.538634 AAGCAGAATTAGTACCCCGTC 57.461 47.619 0.00 0.00 0.00 4.79
3618 4363 3.994931 AAAGCAGAATTAGTACCCCGT 57.005 42.857 0.00 0.00 0.00 5.28
3619 4364 5.607477 TCATAAAGCAGAATTAGTACCCCG 58.393 41.667 0.00 0.00 0.00 5.73
3620 4365 8.465273 AATTCATAAAGCAGAATTAGTACCCC 57.535 34.615 0.00 0.00 41.31 4.95
3631 4376 9.617523 TCTGTCAATCATAATTCATAAAGCAGA 57.382 29.630 0.00 0.00 0.00 4.26
3632 4377 9.880064 CTCTGTCAATCATAATTCATAAAGCAG 57.120 33.333 0.00 0.00 0.00 4.24
3633 4378 9.399797 ACTCTGTCAATCATAATTCATAAAGCA 57.600 29.630 0.00 0.00 0.00 3.91
3642 4387 9.212641 CGATCCATTACTCTGTCAATCATAATT 57.787 33.333 0.00 0.00 0.00 1.40
3643 4388 7.821359 CCGATCCATTACTCTGTCAATCATAAT 59.179 37.037 0.00 0.00 0.00 1.28
3644 4389 7.154656 CCGATCCATTACTCTGTCAATCATAA 58.845 38.462 0.00 0.00 0.00 1.90
3645 4390 6.267699 ACCGATCCATTACTCTGTCAATCATA 59.732 38.462 0.00 0.00 0.00 2.15
3646 4391 5.070981 ACCGATCCATTACTCTGTCAATCAT 59.929 40.000 0.00 0.00 0.00 2.45
3647 4392 4.405680 ACCGATCCATTACTCTGTCAATCA 59.594 41.667 0.00 0.00 0.00 2.57
3648 4393 4.950050 ACCGATCCATTACTCTGTCAATC 58.050 43.478 0.00 0.00 0.00 2.67
3649 4394 5.118990 CAACCGATCCATTACTCTGTCAAT 58.881 41.667 0.00 0.00 0.00 2.57
3650 4395 4.503910 CAACCGATCCATTACTCTGTCAA 58.496 43.478 0.00 0.00 0.00 3.18
3651 4396 3.678806 GCAACCGATCCATTACTCTGTCA 60.679 47.826 0.00 0.00 0.00 3.58
3652 4397 2.866762 GCAACCGATCCATTACTCTGTC 59.133 50.000 0.00 0.00 0.00 3.51
3653 4398 2.420129 GGCAACCGATCCATTACTCTGT 60.420 50.000 0.00 0.00 0.00 3.41
3657 4402 1.134098 CCAGGCAACCGATCCATTACT 60.134 52.381 0.00 0.00 37.17 2.24
3682 4427 3.615937 CCATCTCCTATGAATGCGATTCG 59.384 47.826 0.62 0.62 42.15 3.34
3687 4432 2.301296 AGGTCCATCTCCTATGAATGCG 59.699 50.000 0.00 0.00 33.04 4.73
3715 4544 3.066064 TCGAACATCTTCTCTAGCTCTGC 59.934 47.826 0.00 0.00 0.00 4.26
3807 4636 1.699083 TCTGAGGGCATCACAAAGACA 59.301 47.619 0.00 0.00 33.22 3.41
3813 4642 1.607801 CCGACTCTGAGGGCATCACA 61.608 60.000 9.85 0.00 33.22 3.58
3825 4654 2.820479 CCGAGCGTCTCCGACTCT 60.820 66.667 2.00 0.00 36.06 3.24
3855 4684 2.102357 CCGGACGACATGGACTCG 59.898 66.667 0.00 0.00 37.17 4.18
3900 4729 1.358152 GGATTATGTCGGGGATCCCA 58.642 55.000 32.07 12.38 45.83 4.37
4003 4832 2.504244 CCTGAACTCGTCGTCCGC 60.504 66.667 0.00 0.00 36.19 5.54
4049 4878 1.546029 TCCAGTCACACTTCTCCATCG 59.454 52.381 0.00 0.00 0.00 3.84
4146 4975 2.202388 CATTGCAGCGGCTGAACG 60.202 61.111 32.72 12.94 41.91 3.95
4355 5190 5.449041 CCAATCACAGTATCCCAATTTCACG 60.449 44.000 0.00 0.00 0.00 4.35
4389 5224 7.559590 AAGCTCATCACATTTCCACTATTAC 57.440 36.000 0.00 0.00 0.00 1.89
4390 5225 8.049117 AGAAAGCTCATCACATTTCCACTATTA 58.951 33.333 0.00 0.00 33.16 0.98
4410 5245 0.807496 GATGCTCACCACCAGAAAGC 59.193 55.000 0.00 0.00 0.00 3.51
4440 5279 2.352127 GGATTCTGCTTGCTTCCACAAC 60.352 50.000 0.00 0.00 0.00 3.32
4470 5309 3.319972 AGTGCATATGTGGGCATTTCATC 59.680 43.478 4.29 0.00 42.75 2.92
4489 5328 4.494091 ACAATAGTGAATGGAGGGAGTG 57.506 45.455 0.00 0.00 0.00 3.51
4554 5393 7.219917 TGAAATGAGCGAACAAAAACACTAAAG 59.780 33.333 0.00 0.00 0.00 1.85
4559 5398 4.798387 ACTGAAATGAGCGAACAAAAACAC 59.202 37.500 0.00 0.00 0.00 3.32
4563 5402 4.335315 ACAGACTGAAATGAGCGAACAAAA 59.665 37.500 10.08 0.00 0.00 2.44
4571 5410 6.475076 CAGACTACATACAGACTGAAATGAGC 59.525 42.308 21.47 11.56 39.66 4.26
4618 5457 5.368145 TGCTCCATCCATCTACAAACATAC 58.632 41.667 0.00 0.00 0.00 2.39
4622 5461 4.265073 ACTTGCTCCATCCATCTACAAAC 58.735 43.478 0.00 0.00 0.00 2.93
4629 5472 3.065925 GCTTACAACTTGCTCCATCCATC 59.934 47.826 0.00 0.00 0.00 3.51
4631 5474 2.040278 AGCTTACAACTTGCTCCATCCA 59.960 45.455 0.00 0.00 30.41 3.41
4635 5478 3.287222 ACAAAGCTTACAACTTGCTCCA 58.713 40.909 0.00 0.00 35.85 3.86
4698 5568 1.531149 AGCGACGACATTGAAAGGTTG 59.469 47.619 0.00 0.00 0.00 3.77
4708 5578 1.480954 AGGTTTCCATAGCGACGACAT 59.519 47.619 0.00 0.00 0.00 3.06
4771 5673 4.226761 ACAAATTTGCAACTAGCTTACGC 58.773 39.130 18.12 0.00 45.94 4.42
4796 5698 5.461737 GTGGCATTTGAAATTGAGACGAAAA 59.538 36.000 0.00 0.00 0.00 2.29
4806 5708 1.275010 GGACCCGTGGCATTTGAAATT 59.725 47.619 0.00 0.00 0.00 1.82
4820 5722 2.963101 TCTGGTTATATGACTGGACCCG 59.037 50.000 0.00 0.00 0.00 5.28
4846 5748 2.584835 TTTCTGGGTGGGAGTGATTG 57.415 50.000 0.00 0.00 0.00 2.67
4850 5752 1.073763 TGTGATTTCTGGGTGGGAGTG 59.926 52.381 0.00 0.00 0.00 3.51
4860 5762 3.427528 GCATGCAAGTGTTGTGATTTCTG 59.572 43.478 14.21 0.00 0.00 3.02
4915 5817 9.529325 GCTCTTAAAACACATTTCCTTTTAACT 57.471 29.630 0.00 0.00 30.13 2.24
4917 5819 9.308318 GTGCTCTTAAAACACATTTCCTTTTAA 57.692 29.630 0.00 0.00 34.43 1.52
4918 5820 7.923878 GGTGCTCTTAAAACACATTTCCTTTTA 59.076 33.333 0.00 0.00 36.00 1.52
4919 5821 6.761242 GGTGCTCTTAAAACACATTTCCTTTT 59.239 34.615 0.00 0.00 36.00 2.27
4989 5891 2.962421 CCCTTTCCACTTTGCCAAGTAA 59.038 45.455 2.38 0.00 41.69 2.24
4990 5892 2.091555 ACCCTTTCCACTTTGCCAAGTA 60.092 45.455 2.38 0.00 41.69 2.24
5042 5944 2.031683 CCTTGTTTCCGTATTCATCCGC 59.968 50.000 0.00 0.00 0.00 5.54
5044 5946 2.949644 CCCCTTGTTTCCGTATTCATCC 59.050 50.000 0.00 0.00 0.00 3.51
5055 5957 3.445805 TCTTGTTTGTGACCCCTTGTTTC 59.554 43.478 0.00 0.00 0.00 2.78
5057 5959 3.023832 CTCTTGTTTGTGACCCCTTGTT 58.976 45.455 0.00 0.00 0.00 2.83
5151 10052 1.880340 CTTGCTCGACGGCCTGATC 60.880 63.158 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.