Multiple sequence alignment - TraesCS3D01G053500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G053500 chr3D 100.000 2117 0 0 1 2117 21904522 21906638 0.000000e+00 3910.0
1 TraesCS3D01G053500 chr3D 97.466 671 13 4 1326 1992 435651230 435651900 0.000000e+00 1142.0
2 TraesCS3D01G053500 chr3D 95.192 104 5 0 1229 1332 589901974 589902077 4.670000e-37 165.0
3 TraesCS3D01G053500 chr5D 98.044 1227 17 4 1 1226 6201382 6200162 0.000000e+00 2126.0
4 TraesCS3D01G053500 chr5D 97.931 1160 24 0 67 1226 329162138 329163297 0.000000e+00 2010.0
5 TraesCS3D01G053500 chr5D 97.321 672 14 3 1326 1993 270484932 270484261 0.000000e+00 1138.0
6 TraesCS3D01G053500 chr5D 94.393 107 5 1 1229 1335 546643832 546643727 1.680000e-36 163.0
7 TraesCS3D01G053500 chr1D 97.963 1227 22 2 1 1226 254497894 254499118 0.000000e+00 2124.0
8 TraesCS3D01G053500 chr1D 95.114 1228 52 5 1 1226 244484150 244482929 0.000000e+00 1929.0
9 TraesCS3D01G053500 chr1D 96.637 684 15 7 1316 1992 338329251 338328569 0.000000e+00 1129.0
10 TraesCS3D01G053500 chr1D 95.192 104 5 0 1229 1332 453108698 453108595 4.670000e-37 165.0
11 TraesCS3D01G053500 chr6B 96.900 1226 34 3 2 1226 22425842 22427064 0.000000e+00 2050.0
12 TraesCS3D01G053500 chr1A 96.900 1226 30 3 1 1226 168450665 168449448 0.000000e+00 2047.0
13 TraesCS3D01G053500 chr4D 96.737 1226 35 3 1 1226 19916393 19917613 0.000000e+00 2037.0
14 TraesCS3D01G053500 chr4D 97.185 675 15 4 1326 1996 429089510 429090184 0.000000e+00 1138.0
15 TraesCS3D01G053500 chr4D 95.192 104 5 0 1229 1332 241459323 241459220 4.670000e-37 165.0
16 TraesCS3D01G053500 chr4D 90.244 123 11 1 1229 1351 411028117 411028238 2.170000e-35 159.0
17 TraesCS3D01G053500 chr7B 97.254 1129 23 5 3 1128 125509135 125510258 0.000000e+00 1906.0
18 TraesCS3D01G053500 chr7A 94.051 1227 66 4 1 1226 352194125 352192905 0.000000e+00 1855.0
19 TraesCS3D01G053500 chr7A 97.778 45 1 0 1122 1166 352192965 352193009 6.260000e-11 78.7
20 TraesCS3D01G053500 chr7D 97.474 673 13 4 1326 1994 411441502 411442174 0.000000e+00 1146.0
21 TraesCS3D01G053500 chr7D 94.393 107 5 1 1229 1335 287109661 287109766 1.680000e-36 163.0
22 TraesCS3D01G053500 chr6D 97.329 674 14 3 1326 1995 217275211 217274538 0.000000e+00 1142.0
23 TraesCS3D01G053500 chr6D 97.181 674 15 3 1326 1995 313482262 313481589 0.000000e+00 1136.0
24 TraesCS3D01G053500 chr6D 95.238 105 5 0 1229 1333 342996280 342996384 1.300000e-37 167.0
25 TraesCS3D01G053500 chr2D 97.466 671 13 3 1326 1992 599094675 599094005 0.000000e+00 1142.0
26 TraesCS3D01G053500 chr2D 97.181 674 15 3 1326 1995 455156236 455155563 0.000000e+00 1136.0
27 TraesCS3D01G053500 chr2D 98.058 103 2 0 1229 1331 201043972 201043870 1.670000e-41 180.0
28 TraesCS3D01G053500 chr2D 93.578 109 7 0 1229 1337 363369211 363369103 1.680000e-36 163.0
29 TraesCS3D01G053500 chrUn 95.349 129 5 1 1990 2117 341537265 341537137 9.900000e-49 204.0
30 TraesCS3D01G053500 chrUn 95.349 129 5 1 1990 2117 341539775 341539647 9.900000e-49 204.0
31 TraesCS3D01G053500 chr3A 93.750 128 7 1 1990 2116 31605155 31605282 7.710000e-45 191.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G053500 chr3D 21904522 21906638 2116 False 3910 3910 100.000 1 2117 1 chr3D.!!$F1 2116
1 TraesCS3D01G053500 chr3D 435651230 435651900 670 False 1142 1142 97.466 1326 1992 1 chr3D.!!$F2 666
2 TraesCS3D01G053500 chr5D 6200162 6201382 1220 True 2126 2126 98.044 1 1226 1 chr5D.!!$R1 1225
3 TraesCS3D01G053500 chr5D 329162138 329163297 1159 False 2010 2010 97.931 67 1226 1 chr5D.!!$F1 1159
4 TraesCS3D01G053500 chr5D 270484261 270484932 671 True 1138 1138 97.321 1326 1993 1 chr5D.!!$R2 667
5 TraesCS3D01G053500 chr1D 254497894 254499118 1224 False 2124 2124 97.963 1 1226 1 chr1D.!!$F1 1225
6 TraesCS3D01G053500 chr1D 244482929 244484150 1221 True 1929 1929 95.114 1 1226 1 chr1D.!!$R1 1225
7 TraesCS3D01G053500 chr1D 338328569 338329251 682 True 1129 1129 96.637 1316 1992 1 chr1D.!!$R2 676
8 TraesCS3D01G053500 chr6B 22425842 22427064 1222 False 2050 2050 96.900 2 1226 1 chr6B.!!$F1 1224
9 TraesCS3D01G053500 chr1A 168449448 168450665 1217 True 2047 2047 96.900 1 1226 1 chr1A.!!$R1 1225
10 TraesCS3D01G053500 chr4D 19916393 19917613 1220 False 2037 2037 96.737 1 1226 1 chr4D.!!$F1 1225
11 TraesCS3D01G053500 chr4D 429089510 429090184 674 False 1138 1138 97.185 1326 1996 1 chr4D.!!$F3 670
12 TraesCS3D01G053500 chr7B 125509135 125510258 1123 False 1906 1906 97.254 3 1128 1 chr7B.!!$F1 1125
13 TraesCS3D01G053500 chr7A 352192905 352194125 1220 True 1855 1855 94.051 1 1226 1 chr7A.!!$R1 1225
14 TraesCS3D01G053500 chr7D 411441502 411442174 672 False 1146 1146 97.474 1326 1994 1 chr7D.!!$F2 668
15 TraesCS3D01G053500 chr6D 217274538 217275211 673 True 1142 1142 97.329 1326 1995 1 chr6D.!!$R1 669
16 TraesCS3D01G053500 chr6D 313481589 313482262 673 True 1136 1136 97.181 1326 1995 1 chr6D.!!$R2 669
17 TraesCS3D01G053500 chr2D 599094005 599094675 670 True 1142 1142 97.466 1326 1992 1 chr2D.!!$R4 666
18 TraesCS3D01G053500 chr2D 455155563 455156236 673 True 1136 1136 97.181 1326 1995 1 chr2D.!!$R3 669
19 TraesCS3D01G053500 chrUn 341537137 341539775 2638 True 204 204 95.349 1990 2117 2 chrUn.!!$R1 127

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
137 139 2.223758 GCCTACTCGTTATCAGTGGGAC 60.224 54.545 7.66 0.0 43.58 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1232 1242 0.108585 ATACTAATGGCGCACCCCTG 59.891 55.0 10.83 0.0 33.59 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
137 139 2.223758 GCCTACTCGTTATCAGTGGGAC 60.224 54.545 7.66 0.00 43.58 4.46
702 710 5.111293 CCTTTGCTTTGCTCTTCTTTTTCA 58.889 37.500 0.00 0.00 0.00 2.69
1226 1236 1.520600 GGGTTGCCCAAACGTGGTAG 61.521 60.000 0.00 0.00 44.65 3.18
1228 1238 0.872388 GTTGCCCAAACGTGGTAGAG 59.128 55.000 0.00 0.00 44.30 2.43
1229 1239 0.887387 TTGCCCAAACGTGGTAGAGC 60.887 55.000 0.00 0.00 44.30 4.09
1230 1240 1.302192 GCCCAAACGTGGTAGAGCA 60.302 57.895 0.00 0.00 44.30 4.26
1247 1257 3.334891 ACCAGGGGTGCGCCATTA 61.335 61.111 19.98 0.00 32.98 1.90
1248 1258 2.516930 CCAGGGGTGCGCCATTAG 60.517 66.667 19.98 4.45 36.17 1.73
1249 1259 2.272146 CAGGGGTGCGCCATTAGT 59.728 61.111 19.98 0.00 36.17 2.24
1252 1262 0.396811 AGGGGTGCGCCATTAGTATC 59.603 55.000 19.98 0.00 36.17 2.24
1253 1263 0.107831 GGGGTGCGCCATTAGTATCA 59.892 55.000 19.98 0.00 36.17 2.15
1254 1264 1.476110 GGGGTGCGCCATTAGTATCAA 60.476 52.381 19.98 0.00 36.17 2.57
1255 1265 2.504367 GGGTGCGCCATTAGTATCAAT 58.496 47.619 19.98 0.00 36.17 2.57
1256 1266 2.884639 GGGTGCGCCATTAGTATCAATT 59.115 45.455 19.98 0.00 36.17 2.32
1257 1267 4.069304 GGGTGCGCCATTAGTATCAATTA 58.931 43.478 19.98 0.00 36.17 1.40
1258 1268 4.083484 GGGTGCGCCATTAGTATCAATTAC 60.083 45.833 19.98 0.00 36.17 1.89
1259 1269 4.755123 GGTGCGCCATTAGTATCAATTACT 59.245 41.667 12.58 0.00 38.53 2.24
1262 1272 6.645415 GTGCGCCATTAGTATCAATTACTAGT 59.355 38.462 4.18 0.00 42.83 2.57
1263 1273 6.645003 TGCGCCATTAGTATCAATTACTAGTG 59.355 38.462 4.18 7.81 44.61 2.74
1268 1278 4.665833 AGTATCAATTACTAGTGGCGCA 57.334 40.909 10.83 0.00 39.44 6.09
1269 1279 4.369182 AGTATCAATTACTAGTGGCGCAC 58.631 43.478 10.83 5.73 39.44 5.34
1271 1281 1.276705 TCAATTACTAGTGGCGCACCA 59.723 47.619 10.83 0.00 46.51 4.17
1272 1282 8.836760 AGTATCAATTACTAGTGGCGCACCAG 62.837 46.154 10.83 6.80 42.49 4.00
1284 1294 4.301505 CACCAGTAGTGCGCCATT 57.698 55.556 4.18 0.00 40.28 3.16
1285 1295 3.451793 CACCAGTAGTGCGCCATTA 57.548 52.632 4.18 0.00 40.28 1.90
1286 1296 1.290203 CACCAGTAGTGCGCCATTAG 58.710 55.000 4.18 0.00 40.28 1.73
1287 1297 0.902531 ACCAGTAGTGCGCCATTAGT 59.097 50.000 4.18 0.00 0.00 2.24
1288 1298 2.104967 ACCAGTAGTGCGCCATTAGTA 58.895 47.619 4.18 0.00 0.00 1.82
1302 1312 3.119495 CCATTAGTAGGCAAAACTGGTGC 60.119 47.826 0.00 0.00 41.45 5.01
1303 1313 1.803334 TAGTAGGCAAAACTGGTGCG 58.197 50.000 0.00 0.00 43.18 5.34
1305 1315 2.265182 TAGGCAAAACTGGTGCGCC 61.265 57.895 10.11 10.11 43.18 6.53
1306 1316 2.967507 TAGGCAAAACTGGTGCGCCA 62.968 55.000 19.93 19.93 45.47 5.69
1307 1317 2.658268 GCAAAACTGGTGCGCCAC 60.658 61.111 16.89 0.00 40.46 5.01
1308 1318 3.119193 CAAAACTGGTGCGCCACT 58.881 55.556 16.89 3.24 40.46 4.00
1309 1319 1.791103 GCAAAACTGGTGCGCCACTA 61.791 55.000 16.89 0.00 40.46 2.74
1310 1320 0.238289 CAAAACTGGTGCGCCACTAG 59.762 55.000 16.89 17.26 46.13 2.57
1323 1333 3.351794 GCCACTAGTAGGCCTTTTTCT 57.648 47.619 12.58 7.63 46.50 2.52
1324 1334 4.482952 GCCACTAGTAGGCCTTTTTCTA 57.517 45.455 12.58 8.42 46.50 2.10
1325 1335 4.443621 GCCACTAGTAGGCCTTTTTCTAG 58.556 47.826 12.58 19.03 46.50 2.43
1326 1336 4.081031 GCCACTAGTAGGCCTTTTTCTAGT 60.081 45.833 12.58 19.64 46.50 2.57
1327 1337 5.128335 GCCACTAGTAGGCCTTTTTCTAGTA 59.872 44.000 25.02 10.68 46.50 1.82
1328 1338 6.683360 GCCACTAGTAGGCCTTTTTCTAGTAG 60.683 46.154 25.02 21.59 46.50 2.57
1329 1339 6.380560 CCACTAGTAGGCCTTTTTCTAGTAGT 59.619 42.308 25.02 19.20 45.88 2.73
1336 1346 5.071923 AGGCCTTTTTCTAGTAGTGACTTGT 59.928 40.000 0.00 0.00 37.10 3.16
1664 1674 9.306777 AGAGTTGCATAATCTCATAGTCATAGA 57.693 33.333 0.00 0.00 0.00 1.98
1692 1702 8.454106 ACATGTATAAGTCATGAAGAAAGCAAC 58.546 33.333 11.92 0.00 43.47 4.17
1713 1723 2.991190 CAGCAACATACTAAACGACCGT 59.009 45.455 0.00 0.00 0.00 4.83
1762 1775 9.716531 GTCAATCACATCATTCTCCTAATGATA 57.283 33.333 11.71 0.02 43.38 2.15
2003 2526 6.678900 GCATATTTCCTTCACTTGTGTGGATC 60.679 42.308 14.64 0.00 43.94 3.36
2034 2557 6.777091 TGGCTATAATTGAAACTATGCATGGT 59.223 34.615 10.30 10.30 0.00 3.55
2036 2559 7.809806 GGCTATAATTGAAACTATGCATGGTTC 59.190 37.037 26.20 20.28 30.75 3.62
2037 2560 8.352201 GCTATAATTGAAACTATGCATGGTTCA 58.648 33.333 26.20 22.27 30.75 3.18
2040 2563 2.746904 TGAAACTATGCATGGTTCACCG 59.253 45.455 26.20 0.23 39.43 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
137 139 3.634397 TCTTGCTGAAAGTATCCCTGG 57.366 47.619 0.00 0.00 37.18 4.45
363 367 0.584396 CGGCGTACAAAAAGCTCACA 59.416 50.000 0.00 0.00 32.56 3.58
702 710 1.885157 CGCCATGCCAAATGTGTCT 59.115 52.632 0.00 0.00 0.00 3.41
1230 1240 3.334891 TAATGGCGCACCCCTGGT 61.335 61.111 10.83 0.00 35.62 4.00
1232 1242 0.108585 ATACTAATGGCGCACCCCTG 59.891 55.000 10.83 0.00 33.59 4.45
1236 1246 4.755123 AGTAATTGATACTAATGGCGCACC 59.245 41.667 10.83 0.00 43.16 5.01
1237 1247 5.924475 AGTAATTGATACTAATGGCGCAC 57.076 39.130 10.83 0.00 43.16 5.34
1238 1248 6.645003 CACTAGTAATTGATACTAATGGCGCA 59.355 38.462 10.83 0.00 44.50 6.09
1239 1249 7.050281 CACTAGTAATTGATACTAATGGCGC 57.950 40.000 0.00 0.00 44.50 6.53
1244 1254 6.645415 GTGCGCCACTAGTAATTGATACTAAT 59.355 38.462 4.18 0.00 44.50 1.73
1246 1256 5.508489 GGTGCGCCACTAGTAATTGATACTA 60.508 44.000 12.58 0.00 37.52 1.82
1247 1257 4.369182 GTGCGCCACTAGTAATTGATACT 58.631 43.478 4.18 0.00 46.62 2.12
1248 1258 3.493503 GGTGCGCCACTAGTAATTGATAC 59.506 47.826 12.58 0.00 34.40 2.24
1249 1259 3.133183 TGGTGCGCCACTAGTAATTGATA 59.867 43.478 16.89 0.00 40.46 2.15
1252 1262 1.665679 CTGGTGCGCCACTAGTAATTG 59.334 52.381 16.89 0.00 40.46 2.32
1253 1263 2.024176 CTGGTGCGCCACTAGTAATT 57.976 50.000 16.89 0.00 40.46 1.40
1254 1264 3.760693 CTGGTGCGCCACTAGTAAT 57.239 52.632 16.89 0.00 40.46 1.89
1258 1268 0.458543 CACTACTGGTGCGCCACTAG 60.459 60.000 23.61 23.61 46.13 2.57
1259 1269 1.589630 CACTACTGGTGCGCCACTA 59.410 57.895 16.89 10.21 40.46 2.74
1268 1278 0.902531 ACTAATGGCGCACTACTGGT 59.097 50.000 10.83 0.00 0.00 4.00
1269 1279 2.545952 CCTACTAATGGCGCACTACTGG 60.546 54.545 10.83 0.00 0.00 4.00
1271 1281 1.068741 GCCTACTAATGGCGCACTACT 59.931 52.381 10.83 0.00 41.03 2.57
1272 1282 1.499049 GCCTACTAATGGCGCACTAC 58.501 55.000 10.83 0.00 41.03 2.73
1273 1283 3.980583 GCCTACTAATGGCGCACTA 57.019 52.632 10.83 0.00 41.03 2.74
1274 1284 4.857251 GCCTACTAATGGCGCACT 57.143 55.556 10.83 0.00 41.03 4.40
1281 1291 3.426159 CGCACCAGTTTTGCCTACTAATG 60.426 47.826 0.00 0.00 36.57 1.90
1282 1292 2.747446 CGCACCAGTTTTGCCTACTAAT 59.253 45.455 0.00 0.00 36.57 1.73
1283 1293 2.147958 CGCACCAGTTTTGCCTACTAA 58.852 47.619 0.00 0.00 36.57 2.24
1284 1294 1.803334 CGCACCAGTTTTGCCTACTA 58.197 50.000 0.00 0.00 36.57 1.82
1285 1295 1.515521 GCGCACCAGTTTTGCCTACT 61.516 55.000 0.30 0.00 36.57 2.57
1286 1296 1.081442 GCGCACCAGTTTTGCCTAC 60.081 57.895 0.30 0.00 36.57 3.18
1287 1297 2.265182 GGCGCACCAGTTTTGCCTA 61.265 57.895 10.83 0.00 42.44 3.93
1288 1298 3.605664 GGCGCACCAGTTTTGCCT 61.606 61.111 10.83 0.00 42.44 4.75
1297 1307 3.014085 GCCTACTAGTGGCGCACCA 62.014 63.158 10.83 0.00 46.51 4.17
1298 1308 2.202892 GCCTACTAGTGGCGCACC 60.203 66.667 10.83 0.00 41.03 5.01
1305 1315 7.122353 TCACTACTAGAAAAAGGCCTACTAGTG 59.878 40.741 30.37 25.00 42.07 2.74
1306 1316 7.122501 GTCACTACTAGAAAAAGGCCTACTAGT 59.877 40.741 28.09 28.09 43.62 2.57
1307 1317 7.339976 AGTCACTACTAGAAAAAGGCCTACTAG 59.660 40.741 22.89 22.89 37.25 2.57
1308 1318 7.180663 AGTCACTACTAGAAAAAGGCCTACTA 58.819 38.462 5.16 7.18 32.84 1.82
1309 1319 6.017830 AGTCACTACTAGAAAAAGGCCTACT 58.982 40.000 5.16 6.30 32.84 2.57
1310 1320 6.283544 AGTCACTACTAGAAAAAGGCCTAC 57.716 41.667 5.16 0.00 32.84 3.18
1312 1322 5.071923 ACAAGTCACTACTAGAAAAAGGCCT 59.928 40.000 0.00 0.00 33.75 5.19
1315 1325 5.634020 CGGACAAGTCACTACTAGAAAAAGG 59.366 44.000 0.00 0.00 33.75 3.11
1316 1326 6.444633 TCGGACAAGTCACTACTAGAAAAAG 58.555 40.000 0.00 0.00 33.75 2.27
1317 1327 6.263842 TCTCGGACAAGTCACTACTAGAAAAA 59.736 38.462 0.00 0.00 33.75 1.94
1318 1328 5.766670 TCTCGGACAAGTCACTACTAGAAAA 59.233 40.000 0.00 0.00 33.75 2.29
1319 1329 5.311265 TCTCGGACAAGTCACTACTAGAAA 58.689 41.667 0.00 0.00 33.75 2.52
1320 1330 4.903054 TCTCGGACAAGTCACTACTAGAA 58.097 43.478 0.00 0.00 33.75 2.10
1321 1331 4.548451 TCTCGGACAAGTCACTACTAGA 57.452 45.455 0.00 0.00 33.75 2.43
1322 1332 5.502706 CGAATCTCGGACAAGTCACTACTAG 60.503 48.000 2.29 0.00 36.00 2.57
1323 1333 4.331992 CGAATCTCGGACAAGTCACTACTA 59.668 45.833 2.29 0.00 36.00 1.82
1324 1334 3.127203 CGAATCTCGGACAAGTCACTACT 59.873 47.826 2.29 0.00 36.00 2.57
1325 1335 3.126514 TCGAATCTCGGACAAGTCACTAC 59.873 47.826 2.29 0.00 40.88 2.73
1326 1336 3.340928 TCGAATCTCGGACAAGTCACTA 58.659 45.455 2.29 0.00 40.88 2.74
1327 1337 2.160205 TCGAATCTCGGACAAGTCACT 58.840 47.619 2.29 0.00 40.88 3.41
1328 1338 2.631418 TCGAATCTCGGACAAGTCAC 57.369 50.000 2.29 0.00 40.88 3.67
1329 1339 2.223272 CGATCGAATCTCGGACAAGTCA 60.223 50.000 10.26 0.00 40.88 3.41
1336 1346 0.812811 ACCGACGATCGAATCTCGGA 60.813 55.000 36.54 0.36 44.97 4.55
1638 1648 9.306777 TCTATGACTATGAGATTATGCAACTCT 57.693 33.333 0.00 0.00 0.00 3.24
1664 1674 9.013229 TGCTTTCTTCATGACTTATACATGTTT 57.987 29.630 2.30 0.00 43.56 2.83
1692 1702 2.991190 ACGGTCGTTTAGTATGTTGCTG 59.009 45.455 0.00 0.00 0.00 4.41
1713 1723 2.568062 TGACCCATTCCGTTAGCTTACA 59.432 45.455 3.47 0.00 0.00 2.41
1762 1775 6.603201 AGTTGTCATTTGATTAACGGGATCAT 59.397 34.615 0.00 0.00 33.82 2.45
2034 2557 3.380004 AGTTGAAGCAAACAATCGGTGAA 59.620 39.130 0.00 0.00 32.21 3.18
2036 2559 3.354089 AGTTGAAGCAAACAATCGGTG 57.646 42.857 0.00 0.00 32.21 4.94
2037 2560 3.380004 TGAAGTTGAAGCAAACAATCGGT 59.620 39.130 0.00 0.00 32.21 4.69
2040 2563 7.597743 AGAATGATGAAGTTGAAGCAAACAATC 59.402 33.333 0.00 0.00 32.21 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.