Multiple sequence alignment - TraesCS3D01G052400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G052400 chr3D 100.000 3062 0 0 1 3062 21887438 21890499 0.000000e+00 5655
1 TraesCS3D01G052400 chr3D 85.647 1491 142 38 950 2393 21793002 21794467 0.000000e+00 1502
2 TraesCS3D01G052400 chr3A 93.180 2214 92 17 496 2676 31602976 31605163 0.000000e+00 3197
3 TraesCS3D01G052400 chr3A 85.341 1494 151 40 946 2393 31559153 31560624 0.000000e+00 1483
4 TraesCS3D01G052400 chr3A 92.357 471 26 6 24 491 31602258 31602721 0.000000e+00 662
5 TraesCS3D01G052400 chrUn 93.990 1664 69 11 974 2630 336370768 336369129 0.000000e+00 2490
6 TraesCS3D01G052400 chrUn 93.930 1664 70 11 974 2630 336373434 336371795 0.000000e+00 2484
7 TraesCS3D01G052400 chrUn 95.050 1394 52 3 1289 2676 341538639 341537257 0.000000e+00 2176
8 TraesCS3D01G052400 chrUn 94.978 1394 53 3 1289 2676 341541149 341539767 0.000000e+00 2170
9 TraesCS3D01G052400 chrUn 97.674 387 9 0 2676 3062 96430125 96430511 0.000000e+00 665
10 TraesCS3D01G052400 chr3B 95.030 1348 50 3 1289 2630 38212450 38213786 0.000000e+00 2102
11 TraesCS3D01G052400 chr3B 95.030 1348 50 3 1289 2630 38309783 38311119 0.000000e+00 2102
12 TraesCS3D01G052400 chr3B 89.869 1145 93 8 952 2089 38793992 38795120 0.000000e+00 1450
13 TraesCS3D01G052400 chr3B 85.776 1399 135 35 950 2311 37970689 37972060 0.000000e+00 1423
14 TraesCS3D01G052400 chr3B 79.832 357 58 9 320 663 38793217 38793572 6.560000e-62 248
15 TraesCS3D01G052400 chr3B 81.290 310 28 16 646 937 38793584 38793881 1.100000e-54 224
16 TraesCS3D01G052400 chr4B 86.248 1018 127 8 978 1986 616967490 616968503 0.000000e+00 1092
17 TraesCS3D01G052400 chr5A 85.742 1017 134 6 978 1986 665443631 665444644 0.000000e+00 1064
18 TraesCS3D01G052400 chr6D 97.416 387 9 1 2677 3062 454744778 454744392 0.000000e+00 658
19 TraesCS3D01G052400 chr2D 97.416 387 9 1 2677 3062 468869846 468869460 0.000000e+00 658
20 TraesCS3D01G052400 chr2D 95.990 399 14 2 2665 3062 423600069 423600466 0.000000e+00 647
21 TraesCS3D01G052400 chr7D 97.165 388 9 2 2676 3062 428899856 428899470 0.000000e+00 654
22 TraesCS3D01G052400 chr7D 97.158 387 10 1 2676 3062 591470672 591470287 0.000000e+00 652
23 TraesCS3D01G052400 chr1D 96.931 391 11 1 2673 3062 490409080 490409470 0.000000e+00 654
24 TraesCS3D01G052400 chr1D 96.931 391 9 3 2673 3062 434058334 434057946 0.000000e+00 652
25 TraesCS3D01G052400 chr4D 96.923 390 11 1 2674 3062 20144837 20145226 0.000000e+00 652


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G052400 chr3D 21887438 21890499 3061 False 5655.000000 5655 100.000000 1 3062 1 chr3D.!!$F2 3061
1 TraesCS3D01G052400 chr3D 21793002 21794467 1465 False 1502.000000 1502 85.647000 950 2393 1 chr3D.!!$F1 1443
2 TraesCS3D01G052400 chr3A 31602258 31605163 2905 False 1929.500000 3197 92.768500 24 2676 2 chr3A.!!$F2 2652
3 TraesCS3D01G052400 chr3A 31559153 31560624 1471 False 1483.000000 1483 85.341000 946 2393 1 chr3A.!!$F1 1447
4 TraesCS3D01G052400 chrUn 336369129 336373434 4305 True 2487.000000 2490 93.960000 974 2630 2 chrUn.!!$R1 1656
5 TraesCS3D01G052400 chrUn 341537257 341541149 3892 True 2173.000000 2176 95.014000 1289 2676 2 chrUn.!!$R2 1387
6 TraesCS3D01G052400 chr3B 38212450 38213786 1336 False 2102.000000 2102 95.030000 1289 2630 1 chr3B.!!$F2 1341
7 TraesCS3D01G052400 chr3B 38309783 38311119 1336 False 2102.000000 2102 95.030000 1289 2630 1 chr3B.!!$F3 1341
8 TraesCS3D01G052400 chr3B 37970689 37972060 1371 False 1423.000000 1423 85.776000 950 2311 1 chr3B.!!$F1 1361
9 TraesCS3D01G052400 chr3B 38793217 38795120 1903 False 640.666667 1450 83.663667 320 2089 3 chr3B.!!$F4 1769
10 TraesCS3D01G052400 chr4B 616967490 616968503 1013 False 1092.000000 1092 86.248000 978 1986 1 chr4B.!!$F1 1008
11 TraesCS3D01G052400 chr5A 665443631 665444644 1013 False 1064.000000 1064 85.742000 978 1986 1 chr5A.!!$F1 1008

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
974 1233 0.10741 AACTCCAAGAACACACGCCA 60.107 50.0 0.0 0.0 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2800 7203 0.038892 ACGACTACATCAACCGCGTT 60.039 50.0 4.92 0.0 0.0 4.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.656587 TAGCCTGTTGAGGACATGGT 58.343 50.000 0.00 0.00 42.93 3.55
42 43 8.700051 TGAGGACATGGTTTGATTTAAGAAAAA 58.300 29.630 0.00 0.00 0.00 1.94
70 71 3.066342 AGTGTTCGATTCGTCGATGGTAT 59.934 43.478 4.48 0.00 42.02 2.73
81 82 9.435802 GATTCGTCGATGGTATATAGTATGAAC 57.564 37.037 4.48 0.00 0.00 3.18
82 83 8.557592 TTCGTCGATGGTATATAGTATGAACT 57.442 34.615 4.48 0.00 39.91 3.01
83 84 9.657419 TTCGTCGATGGTATATAGTATGAACTA 57.343 33.333 4.48 0.00 42.35 2.24
85 86 9.865484 CGTCGATGGTATATAGTATGAACTATG 57.135 37.037 8.04 0.00 46.28 2.23
116 117 8.049117 TGTGAATAAAGCATGTCCTTTCTAGAT 58.951 33.333 0.00 0.00 36.50 1.98
119 120 8.443953 AATAAAGCATGTCCTTTCTAGATCAC 57.556 34.615 0.00 0.00 36.50 3.06
137 138 3.314553 TCACGAAGATCAACGAAAGGTC 58.685 45.455 16.10 0.00 0.00 3.85
138 139 2.412089 CACGAAGATCAACGAAAGGTCC 59.588 50.000 16.10 0.00 0.00 4.46
179 180 8.506168 AAGTACATGACAAACAAGAAGAAAGA 57.494 30.769 0.00 0.00 0.00 2.52
258 260 6.910536 ATTCTCGAATGAGCGACTTAATTT 57.089 33.333 0.00 0.00 42.26 1.82
259 261 5.702622 TCTCGAATGAGCGACTTAATTTG 57.297 39.130 0.00 0.00 42.26 2.32
272 274 8.303876 AGCGACTTAATTTGACCAAAAATATGT 58.696 29.630 0.00 5.10 33.56 2.29
309 311 9.736023 GCACATAAATAATTAGAAAAGACTGGG 57.264 33.333 0.00 0.00 0.00 4.45
483 488 8.910351 ATTTTGGGAATAGAGCTAGTGTATTC 57.090 34.615 10.87 10.87 39.61 1.75
496 561 9.591792 GAGCTAGTGTATTCATTATGCATGATA 57.408 33.333 10.16 0.00 41.82 2.15
497 562 9.948964 AGCTAGTGTATTCATTATGCATGATAA 57.051 29.630 10.16 0.00 41.82 1.75
558 812 5.939296 TGCATATCTTCTTGACAATGTGACA 59.061 36.000 0.00 0.00 0.00 3.58
593 848 4.757594 TGGCCATTTTTACTCATTCATGC 58.242 39.130 0.00 0.00 0.00 4.06
722 981 3.857010 GCTTTTGCTACACGGCAGAAAAT 60.857 43.478 0.00 0.00 43.39 1.82
744 1003 7.886629 AATCACATGTAATATGGAGCTTTGT 57.113 32.000 0.00 0.00 0.00 2.83
833 1092 7.990886 GGAAATATTACTCCACTTCCACACATA 59.009 37.037 1.87 0.00 33.89 2.29
834 1093 9.561069 GAAATATTACTCCACTTCCACACATAT 57.439 33.333 0.00 0.00 0.00 1.78
860 1119 0.839277 CACAGGTAGATGCATCCCCA 59.161 55.000 26.44 11.32 0.00 4.96
920 1179 3.243501 CCACAACAACCACCTTCATCTTG 60.244 47.826 0.00 0.00 0.00 3.02
956 1215 6.844696 CTAGAACAGCTAAGAAACACACAA 57.155 37.500 0.00 0.00 0.00 3.33
957 1216 5.485662 AGAACAGCTAAGAAACACACAAC 57.514 39.130 0.00 0.00 0.00 3.32
958 1217 5.186198 AGAACAGCTAAGAAACACACAACT 58.814 37.500 0.00 0.00 0.00 3.16
960 1219 3.877508 ACAGCTAAGAAACACACAACTCC 59.122 43.478 0.00 0.00 0.00 3.85
961 1220 3.876914 CAGCTAAGAAACACACAACTCCA 59.123 43.478 0.00 0.00 0.00 3.86
970 1229 2.747446 ACACACAACTCCAAGAACACAC 59.253 45.455 0.00 0.00 0.00 3.82
971 1230 2.006888 ACACAACTCCAAGAACACACG 58.993 47.619 0.00 0.00 0.00 4.49
972 1231 1.014352 ACAACTCCAAGAACACACGC 58.986 50.000 0.00 0.00 0.00 5.34
973 1232 0.307760 CAACTCCAAGAACACACGCC 59.692 55.000 0.00 0.00 0.00 5.68
974 1233 0.107410 AACTCCAAGAACACACGCCA 60.107 50.000 0.00 0.00 0.00 5.69
976 1235 0.588252 CTCCAAGAACACACGCCAAG 59.412 55.000 0.00 0.00 0.00 3.61
979 2755 1.403679 CCAAGAACACACGCCAAGAAA 59.596 47.619 0.00 0.00 0.00 2.52
1161 2988 4.175489 ACCTCGCGGTCGACATCG 62.175 66.667 18.91 18.73 40.27 3.84
1162 2989 4.907034 CCTCGCGGTCGACATCGG 62.907 72.222 18.91 12.49 40.21 4.18
1168 2995 4.796231 GGTCGACATCGGCGCAGT 62.796 66.667 18.91 2.17 46.26 4.40
1169 2996 2.809601 GTCGACATCGGCGCAGTT 60.810 61.111 11.55 0.00 40.29 3.16
1170 2997 2.809174 TCGACATCGGCGCAGTTG 60.809 61.111 10.83 13.77 40.29 3.16
1392 5729 3.889134 CTTCCTGGCAGCGCACTCA 62.889 63.158 11.47 3.00 0.00 3.41
1938 6290 0.390124 TCGTTAGGCTGTTCGGTGTT 59.610 50.000 0.00 0.00 0.00 3.32
2125 6498 9.974980 TCCCTTTTCTTATTGTTGTTAAATGAC 57.025 29.630 0.00 0.00 0.00 3.06
2126 6499 9.757227 CCCTTTTCTTATTGTTGTTAAATGACA 57.243 29.630 0.00 0.00 0.00 3.58
2167 6540 7.561251 TGATCCTGTTCGTGGATTAGATAAAA 58.439 34.615 0.00 0.00 43.68 1.52
2170 6543 8.433421 TCCTGTTCGTGGATTAGATAAAATTC 57.567 34.615 0.00 0.00 0.00 2.17
2175 6561 8.552034 GTTCGTGGATTAGATAAAATTCTCTGG 58.448 37.037 0.00 0.00 0.00 3.86
2214 6601 5.088739 GTCGGATTGCAAATTGAGTTGTAG 58.911 41.667 1.71 0.00 0.00 2.74
2270 6664 7.175104 AGGAATTCTAGCTAGAGAGGTCATAG 58.825 42.308 22.19 0.00 34.50 2.23
2324 6723 8.518430 TGTATGTACTATCATTTTGGCACATT 57.482 30.769 0.00 0.00 39.30 2.71
2454 6854 4.098501 TGATATCCGCTCAGCCACTATATG 59.901 45.833 0.00 0.00 0.00 1.78
2541 6942 1.217244 CTGAATTGCTTGCTGGCCC 59.783 57.895 0.00 0.00 0.00 5.80
2600 7003 9.573133 CGTATGCATAGATTAGTCATTGTCATA 57.427 33.333 6.67 0.00 0.00 2.15
2676 7079 8.777865 TCATAAATTCGAGAAGTCATCTTGTT 57.222 30.769 0.00 0.00 40.10 2.83
2677 7080 8.659491 TCATAAATTCGAGAAGTCATCTTGTTG 58.341 33.333 0.00 0.00 40.10 3.33
2678 7081 6.867662 AAATTCGAGAAGTCATCTTGTTGT 57.132 33.333 0.00 0.00 40.10 3.32
2679 7082 6.867662 AATTCGAGAAGTCATCTTGTTGTT 57.132 33.333 0.00 0.00 40.10 2.83
2680 7083 5.657470 TTCGAGAAGTCATCTTGTTGTTG 57.343 39.130 0.00 0.00 40.10 3.33
2681 7084 4.058124 TCGAGAAGTCATCTTGTTGTTGG 58.942 43.478 0.00 0.00 40.10 3.77
2682 7085 3.187227 CGAGAAGTCATCTTGTTGTTGGG 59.813 47.826 0.00 0.00 38.96 4.12
2683 7086 3.490348 AGAAGTCATCTTGTTGTTGGGG 58.510 45.455 0.00 0.00 33.39 4.96
2684 7087 3.138283 AGAAGTCATCTTGTTGTTGGGGA 59.862 43.478 0.00 0.00 33.39 4.81
2685 7088 3.593442 AGTCATCTTGTTGTTGGGGAA 57.407 42.857 0.00 0.00 0.00 3.97
2686 7089 3.222603 AGTCATCTTGTTGTTGGGGAAC 58.777 45.455 0.00 0.00 0.00 3.62
2687 7090 2.031157 GTCATCTTGTTGTTGGGGAACG 60.031 50.000 0.00 0.00 0.00 3.95
2688 7091 1.953686 CATCTTGTTGTTGGGGAACGT 59.046 47.619 0.00 0.00 0.00 3.99
2689 7092 3.142951 CATCTTGTTGTTGGGGAACGTA 58.857 45.455 0.00 0.00 0.00 3.57
2690 7093 2.841215 TCTTGTTGTTGGGGAACGTAG 58.159 47.619 0.00 0.00 0.00 3.51
2692 7095 3.387374 TCTTGTTGTTGGGGAACGTAGTA 59.613 43.478 0.00 0.00 45.00 1.82
2693 7096 3.834489 TGTTGTTGGGGAACGTAGTAA 57.166 42.857 0.00 0.00 45.00 2.24
2694 7097 4.354893 TGTTGTTGGGGAACGTAGTAAT 57.645 40.909 0.00 0.00 45.00 1.89
2695 7098 4.716794 TGTTGTTGGGGAACGTAGTAATT 58.283 39.130 0.00 0.00 45.00 1.40
2696 7099 5.131784 TGTTGTTGGGGAACGTAGTAATTT 58.868 37.500 0.00 0.00 45.00 1.82
2697 7100 5.239087 TGTTGTTGGGGAACGTAGTAATTTC 59.761 40.000 0.00 0.00 45.00 2.17
2698 7101 4.970711 TGTTGGGGAACGTAGTAATTTCA 58.029 39.130 0.00 0.00 45.00 2.69
2699 7102 5.374921 TGTTGGGGAACGTAGTAATTTCAA 58.625 37.500 0.00 0.00 45.00 2.69
2700 7103 5.826737 TGTTGGGGAACGTAGTAATTTCAAA 59.173 36.000 0.00 0.00 45.00 2.69
2701 7104 6.320672 TGTTGGGGAACGTAGTAATTTCAAAA 59.679 34.615 0.00 0.00 45.00 2.44
2702 7105 6.956202 TGGGGAACGTAGTAATTTCAAAAA 57.044 33.333 0.00 0.00 45.00 1.94
2722 7125 5.493133 AAAAATTCTACGCACACACAAGA 57.507 34.783 0.00 0.00 0.00 3.02
2723 7126 5.689383 AAAATTCTACGCACACACAAGAT 57.311 34.783 0.00 0.00 0.00 2.40
2724 7127 4.928661 AATTCTACGCACACACAAGATC 57.071 40.909 0.00 0.00 0.00 2.75
2725 7128 3.378911 TTCTACGCACACACAAGATCA 57.621 42.857 0.00 0.00 0.00 2.92
2726 7129 3.592898 TCTACGCACACACAAGATCAT 57.407 42.857 0.00 0.00 0.00 2.45
2727 7130 3.253230 TCTACGCACACACAAGATCATG 58.747 45.455 0.00 0.00 0.00 3.07
2728 7131 1.159285 ACGCACACACAAGATCATGG 58.841 50.000 2.59 0.00 0.00 3.66
2729 7132 1.159285 CGCACACACAAGATCATGGT 58.841 50.000 2.59 0.00 0.00 3.55
2730 7133 1.135888 CGCACACACAAGATCATGGTG 60.136 52.381 14.17 14.17 38.47 4.17
2731 7134 2.153645 GCACACACAAGATCATGGTGA 58.846 47.619 19.56 0.00 36.42 4.02
2732 7135 2.751259 GCACACACAAGATCATGGTGAT 59.249 45.455 19.56 0.00 40.34 3.06
2733 7136 3.427098 GCACACACAAGATCATGGTGATG 60.427 47.826 19.56 15.44 37.20 3.07
2734 7137 2.751259 ACACACAAGATCATGGTGATGC 59.249 45.455 19.56 0.00 37.20 3.91
2735 7138 2.750712 CACACAAGATCATGGTGATGCA 59.249 45.455 15.51 0.00 37.20 3.96
2736 7139 3.380320 CACACAAGATCATGGTGATGCAT 59.620 43.478 15.51 0.00 37.20 3.96
2737 7140 4.577283 CACACAAGATCATGGTGATGCATA 59.423 41.667 15.51 0.00 37.20 3.14
2738 7141 4.820173 ACACAAGATCATGGTGATGCATAG 59.180 41.667 15.51 0.00 37.20 2.23
2739 7142 3.819337 ACAAGATCATGGTGATGCATAGC 59.181 43.478 0.00 0.00 37.20 2.97
2740 7143 3.782656 AGATCATGGTGATGCATAGCA 57.217 42.857 0.00 4.86 44.86 3.49
2741 7144 4.094830 AGATCATGGTGATGCATAGCAA 57.905 40.909 0.00 0.00 43.62 3.91
2742 7145 3.819337 AGATCATGGTGATGCATAGCAAC 59.181 43.478 0.00 0.00 43.62 4.17
2743 7146 1.941975 TCATGGTGATGCATAGCAACG 59.058 47.619 0.00 1.35 43.62 4.10
2744 7147 1.941975 CATGGTGATGCATAGCAACGA 59.058 47.619 0.00 0.00 43.62 3.85
2745 7148 1.655484 TGGTGATGCATAGCAACGAG 58.345 50.000 0.00 0.00 43.62 4.18
2746 7149 1.206849 TGGTGATGCATAGCAACGAGA 59.793 47.619 0.00 0.00 43.62 4.04
2747 7150 1.863454 GGTGATGCATAGCAACGAGAG 59.137 52.381 0.00 0.00 43.62 3.20
2748 7151 1.863454 GTGATGCATAGCAACGAGAGG 59.137 52.381 0.00 0.00 43.62 3.69
2749 7152 1.202568 TGATGCATAGCAACGAGAGGG 60.203 52.381 0.00 0.00 43.62 4.30
2750 7153 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
2751 7154 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
2752 7155 0.249657 GCATAGCAACGAGAGGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
2753 7156 1.403814 CATAGCAACGAGAGGGGAGA 58.596 55.000 0.00 0.00 0.00 3.71
2754 7157 1.339610 CATAGCAACGAGAGGGGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
2755 7158 0.331954 TAGCAACGAGAGGGGAGAGT 59.668 55.000 0.00 0.00 0.00 3.24
2756 7159 0.331954 AGCAACGAGAGGGGAGAGTA 59.668 55.000 0.00 0.00 0.00 2.59
2757 7160 1.063567 AGCAACGAGAGGGGAGAGTAT 60.064 52.381 0.00 0.00 0.00 2.12
2758 7161 1.757699 GCAACGAGAGGGGAGAGTATT 59.242 52.381 0.00 0.00 0.00 1.89
2759 7162 2.482142 GCAACGAGAGGGGAGAGTATTG 60.482 54.545 0.00 0.00 0.00 1.90
2760 7163 2.761208 CAACGAGAGGGGAGAGTATTGT 59.239 50.000 0.00 0.00 0.00 2.71
2761 7164 2.657143 ACGAGAGGGGAGAGTATTGTC 58.343 52.381 0.00 0.00 0.00 3.18
2762 7165 1.957877 CGAGAGGGGAGAGTATTGTCC 59.042 57.143 0.00 0.00 36.03 4.02
2763 7166 2.687014 CGAGAGGGGAGAGTATTGTCCA 60.687 54.545 3.74 0.00 38.50 4.02
2764 7167 2.696187 GAGAGGGGAGAGTATTGTCCAC 59.304 54.545 3.74 0.00 40.47 4.02
2765 7168 1.409427 GAGGGGAGAGTATTGTCCACG 59.591 57.143 3.74 0.00 44.77 4.94
2766 7169 1.192428 GGGGAGAGTATTGTCCACGT 58.808 55.000 3.74 0.00 38.50 4.49
2767 7170 2.024655 AGGGGAGAGTATTGTCCACGTA 60.025 50.000 3.74 0.00 44.77 3.57
2768 7171 2.100418 GGGGAGAGTATTGTCCACGTAC 59.900 54.545 3.74 0.00 38.50 3.67
2769 7172 2.100418 GGGAGAGTATTGTCCACGTACC 59.900 54.545 3.74 0.00 38.50 3.34
2770 7173 2.100418 GGAGAGTATTGTCCACGTACCC 59.900 54.545 0.00 0.00 36.76 3.69
2771 7174 3.022406 GAGAGTATTGTCCACGTACCCT 58.978 50.000 0.00 0.00 0.00 4.34
2772 7175 3.022406 AGAGTATTGTCCACGTACCCTC 58.978 50.000 0.00 0.00 0.00 4.30
2773 7176 1.747355 AGTATTGTCCACGTACCCTCG 59.253 52.381 0.00 0.00 0.00 4.63
2774 7177 1.474077 GTATTGTCCACGTACCCTCGT 59.526 52.381 0.00 0.00 45.10 4.18
2775 7178 1.838112 ATTGTCCACGTACCCTCGTA 58.162 50.000 0.00 0.00 42.27 3.43
2776 7179 1.167851 TTGTCCACGTACCCTCGTAG 58.832 55.000 0.00 0.00 42.27 3.51
2777 7180 0.324614 TGTCCACGTACCCTCGTAGA 59.675 55.000 0.00 0.00 42.27 2.59
2778 7181 0.729690 GTCCACGTACCCTCGTAGAC 59.270 60.000 0.00 2.79 42.50 2.59
2779 7182 0.392998 TCCACGTACCCTCGTAGACC 60.393 60.000 0.00 0.00 42.27 3.85
2780 7183 1.709147 CCACGTACCCTCGTAGACCG 61.709 65.000 0.00 0.00 42.27 4.79
2781 7184 0.740868 CACGTACCCTCGTAGACCGA 60.741 60.000 0.00 0.00 45.00 4.69
2782 7185 0.036388 ACGTACCCTCGTAGACCGAA 60.036 55.000 0.00 0.00 46.75 4.30
2783 7186 1.086696 CGTACCCTCGTAGACCGAAA 58.913 55.000 0.00 0.00 46.75 3.46
2784 7187 1.063174 CGTACCCTCGTAGACCGAAAG 59.937 57.143 0.00 0.00 46.75 2.62
2785 7188 1.098050 TACCCTCGTAGACCGAAAGC 58.902 55.000 0.00 0.00 46.75 3.51
2786 7189 1.226603 CCCTCGTAGACCGAAAGCG 60.227 63.158 0.00 0.00 46.75 4.68
2810 7213 1.823260 CGTTAGCACAACGCGGTTGA 61.823 55.000 22.26 3.38 45.28 3.18
2811 7214 0.515564 GTTAGCACAACGCGGTTGAT 59.484 50.000 22.26 13.46 45.28 2.57
2812 7215 0.515127 TTAGCACAACGCGGTTGATG 59.485 50.000 22.26 17.39 45.28 3.07
2813 7216 0.601576 TAGCACAACGCGGTTGATGT 60.602 50.000 22.26 11.72 45.28 3.06
2814 7217 0.601576 AGCACAACGCGGTTGATGTA 60.602 50.000 22.26 0.00 45.28 2.29
2815 7218 0.179225 GCACAACGCGGTTGATGTAG 60.179 55.000 22.26 1.41 45.28 2.74
2816 7219 1.144969 CACAACGCGGTTGATGTAGT 58.855 50.000 22.26 2.04 45.28 2.73
2817 7220 1.126113 CACAACGCGGTTGATGTAGTC 59.874 52.381 22.26 0.00 45.28 2.59
2818 7221 0.365523 CAACGCGGTTGATGTAGTCG 59.634 55.000 12.47 0.00 45.28 4.18
2819 7222 0.038892 AACGCGGTTGATGTAGTCGT 60.039 50.000 12.47 0.00 0.00 4.34
2820 7223 0.804364 ACGCGGTTGATGTAGTCGTA 59.196 50.000 12.47 0.00 0.00 3.43
2821 7224 1.186030 CGCGGTTGATGTAGTCGTAC 58.814 55.000 0.00 0.00 0.00 3.67
2822 7225 1.186030 GCGGTTGATGTAGTCGTACG 58.814 55.000 9.53 9.53 30.95 3.67
2823 7226 1.466360 GCGGTTGATGTAGTCGTACGT 60.466 52.381 16.05 0.00 30.95 3.57
2824 7227 2.434761 CGGTTGATGTAGTCGTACGTC 58.565 52.381 16.05 10.06 43.16 4.34
2825 7228 2.094894 CGGTTGATGTAGTCGTACGTCT 59.905 50.000 18.54 18.54 43.23 4.18
2826 7229 3.425359 CGGTTGATGTAGTCGTACGTCTT 60.425 47.826 19.61 2.66 43.23 3.01
2827 7230 4.094212 GGTTGATGTAGTCGTACGTCTTC 58.906 47.826 19.61 15.02 43.23 2.87
2828 7231 4.378770 GGTTGATGTAGTCGTACGTCTTCA 60.379 45.833 19.61 19.79 43.23 3.02
2829 7232 4.332186 TGATGTAGTCGTACGTCTTCAC 57.668 45.455 19.61 13.19 43.23 3.18
2839 7242 4.379221 GTCTTCACGATCCGACCG 57.621 61.111 0.00 0.00 0.00 4.79
2840 7243 1.798735 GTCTTCACGATCCGACCGA 59.201 57.895 0.00 0.00 0.00 4.69
2841 7244 0.381089 GTCTTCACGATCCGACCGAT 59.619 55.000 0.00 0.00 0.00 4.18
2842 7245 0.661552 TCTTCACGATCCGACCGATC 59.338 55.000 0.00 0.00 43.58 3.69
2843 7246 0.380733 CTTCACGATCCGACCGATCA 59.619 55.000 0.00 0.00 46.85 2.92
2844 7247 0.812549 TTCACGATCCGACCGATCAA 59.187 50.000 0.00 0.00 46.85 2.57
2845 7248 0.380733 TCACGATCCGACCGATCAAG 59.619 55.000 0.00 0.00 46.85 3.02
2846 7249 0.100682 CACGATCCGACCGATCAAGT 59.899 55.000 0.00 0.00 46.85 3.16
2847 7250 1.332686 CACGATCCGACCGATCAAGTA 59.667 52.381 0.00 0.00 46.85 2.24
2848 7251 1.332997 ACGATCCGACCGATCAAGTAC 59.667 52.381 0.00 0.00 46.85 2.73
2849 7252 1.334779 CGATCCGACCGATCAAGTACC 60.335 57.143 4.93 0.00 46.85 3.34
2850 7253 0.666913 ATCCGACCGATCAAGTACCG 59.333 55.000 0.00 0.00 0.00 4.02
2851 7254 0.392863 TCCGACCGATCAAGTACCGA 60.393 55.000 0.00 0.00 0.00 4.69
2852 7255 0.452987 CCGACCGATCAAGTACCGAA 59.547 55.000 0.00 0.00 0.00 4.30
2853 7256 1.542544 CGACCGATCAAGTACCGAAC 58.457 55.000 0.00 0.00 0.00 3.95
2854 7257 1.542544 GACCGATCAAGTACCGAACG 58.457 55.000 5.81 5.81 0.00 3.95
2855 7258 0.457337 ACCGATCAAGTACCGAACGC 60.457 55.000 6.95 0.00 0.00 4.84
2856 7259 0.457166 CCGATCAAGTACCGAACGCA 60.457 55.000 6.95 0.00 0.00 5.24
2857 7260 0.638746 CGATCAAGTACCGAACGCAC 59.361 55.000 0.00 0.00 0.00 5.34
2858 7261 0.638746 GATCAAGTACCGAACGCACG 59.361 55.000 0.00 0.00 0.00 5.34
2875 7278 2.435059 GGCACCTCCGAGTTCAGC 60.435 66.667 0.00 0.00 0.00 4.26
2876 7279 2.343758 GCACCTCCGAGTTCAGCA 59.656 61.111 0.00 0.00 0.00 4.41
2877 7280 2.029844 GCACCTCCGAGTTCAGCAC 61.030 63.158 0.00 0.00 0.00 4.40
2878 7281 1.367471 CACCTCCGAGTTCAGCACA 59.633 57.895 0.00 0.00 0.00 4.57
2879 7282 0.946221 CACCTCCGAGTTCAGCACAC 60.946 60.000 0.00 0.00 0.00 3.82
2880 7283 1.734477 CCTCCGAGTTCAGCACACG 60.734 63.158 0.00 0.00 39.03 4.49
2881 7284 1.007271 CTCCGAGTTCAGCACACGT 60.007 57.895 0.00 0.00 37.75 4.49
2882 7285 0.597637 CTCCGAGTTCAGCACACGTT 60.598 55.000 0.00 0.00 37.75 3.99
2883 7286 0.596600 TCCGAGTTCAGCACACGTTC 60.597 55.000 0.00 0.00 37.75 3.95
2884 7287 0.874175 CCGAGTTCAGCACACGTTCA 60.874 55.000 0.00 0.00 37.75 3.18
2885 7288 0.504384 CGAGTTCAGCACACGTTCAG 59.496 55.000 0.00 0.00 35.01 3.02
2886 7289 0.233332 GAGTTCAGCACACGTTCAGC 59.767 55.000 0.00 0.00 0.00 4.26
2887 7290 0.179073 AGTTCAGCACACGTTCAGCT 60.179 50.000 0.64 0.64 39.63 4.24
2888 7291 0.233332 GTTCAGCACACGTTCAGCTC 59.767 55.000 3.38 0.00 36.26 4.09
2889 7292 1.215014 TTCAGCACACGTTCAGCTCG 61.215 55.000 3.38 0.00 36.26 5.03
2890 7293 1.661509 CAGCACACGTTCAGCTCGA 60.662 57.895 3.38 0.00 36.26 4.04
2891 7294 1.010935 CAGCACACGTTCAGCTCGAT 61.011 55.000 3.38 0.00 36.26 3.59
2892 7295 1.010935 AGCACACGTTCAGCTCGATG 61.011 55.000 0.00 0.07 32.05 3.84
2893 7296 1.008875 GCACACGTTCAGCTCGATGA 61.009 55.000 0.00 0.00 0.00 2.92
2894 7297 0.710567 CACACGTTCAGCTCGATGAC 59.289 55.000 0.00 0.00 0.00 3.06
2895 7298 0.313987 ACACGTTCAGCTCGATGACA 59.686 50.000 0.00 0.00 0.00 3.58
2896 7299 1.067565 ACACGTTCAGCTCGATGACAT 60.068 47.619 0.00 0.00 0.00 3.06
2897 7300 1.585668 CACGTTCAGCTCGATGACATC 59.414 52.381 5.28 5.28 0.00 3.06
2898 7301 1.203928 CGTTCAGCTCGATGACATCC 58.796 55.000 9.87 0.00 0.00 3.51
2899 7302 1.576356 GTTCAGCTCGATGACATCCC 58.424 55.000 9.87 0.00 0.00 3.85
2900 7303 1.137872 GTTCAGCTCGATGACATCCCT 59.862 52.381 9.87 1.51 0.00 4.20
2901 7304 1.035923 TCAGCTCGATGACATCCCTC 58.964 55.000 9.87 0.00 0.00 4.30
2902 7305 0.318529 CAGCTCGATGACATCCCTCG 60.319 60.000 9.87 0.00 0.00 4.63
2903 7306 0.466372 AGCTCGATGACATCCCTCGA 60.466 55.000 9.87 4.40 38.95 4.04
2904 7307 0.385751 GCTCGATGACATCCCTCGAA 59.614 55.000 9.87 0.00 40.52 3.71
2905 7308 1.866063 GCTCGATGACATCCCTCGAAC 60.866 57.143 9.87 0.00 40.52 3.95
2906 7309 1.678627 CTCGATGACATCCCTCGAACT 59.321 52.381 9.87 0.00 40.52 3.01
2907 7310 1.676529 TCGATGACATCCCTCGAACTC 59.323 52.381 9.87 0.00 38.37 3.01
2908 7311 1.269309 CGATGACATCCCTCGAACTCC 60.269 57.143 9.87 0.00 34.41 3.85
2909 7312 0.747255 ATGACATCCCTCGAACTCCG 59.253 55.000 0.00 0.00 40.25 4.63
2910 7313 0.323087 TGACATCCCTCGAACTCCGA 60.323 55.000 0.00 0.00 46.35 4.55
2917 7320 3.207354 TCGAACTCCGATCCAGCC 58.793 61.111 0.00 0.00 43.23 4.85
2918 7321 2.278857 CGAACTCCGATCCAGCCG 60.279 66.667 0.00 0.00 41.76 5.52
2919 7322 2.771639 CGAACTCCGATCCAGCCGA 61.772 63.158 0.00 0.00 41.76 5.54
2920 7323 1.066587 GAACTCCGATCCAGCCGAG 59.933 63.158 0.00 0.00 0.00 4.63
2921 7324 2.962697 GAACTCCGATCCAGCCGAGC 62.963 65.000 0.00 0.00 0.00 5.03
2922 7325 3.222855 CTCCGATCCAGCCGAGCT 61.223 66.667 0.00 0.00 40.77 4.09
2923 7326 2.759973 TCCGATCCAGCCGAGCTT 60.760 61.111 0.00 0.00 36.40 3.74
2924 7327 2.187946 CCGATCCAGCCGAGCTTT 59.812 61.111 0.00 0.00 36.40 3.51
2925 7328 1.040893 TCCGATCCAGCCGAGCTTTA 61.041 55.000 0.00 0.00 36.40 1.85
2926 7329 0.179084 CCGATCCAGCCGAGCTTTAA 60.179 55.000 0.00 0.00 36.40 1.52
2927 7330 1.212616 CGATCCAGCCGAGCTTTAAG 58.787 55.000 0.00 0.00 36.40 1.85
2928 7331 1.587547 GATCCAGCCGAGCTTTAAGG 58.412 55.000 0.00 0.00 36.40 2.69
2929 7332 0.181350 ATCCAGCCGAGCTTTAAGGG 59.819 55.000 0.00 0.00 36.40 3.95
2930 7333 0.907704 TCCAGCCGAGCTTTAAGGGA 60.908 55.000 0.00 0.00 36.40 4.20
2931 7334 0.462759 CCAGCCGAGCTTTAAGGGAG 60.463 60.000 0.00 0.00 36.40 4.30
2932 7335 0.537188 CAGCCGAGCTTTAAGGGAGA 59.463 55.000 0.00 0.00 36.40 3.71
2933 7336 0.827368 AGCCGAGCTTTAAGGGAGAG 59.173 55.000 0.00 0.00 33.89 3.20
2934 7337 0.537653 GCCGAGCTTTAAGGGAGAGT 59.462 55.000 0.00 0.00 0.00 3.24
2935 7338 1.066071 GCCGAGCTTTAAGGGAGAGTT 60.066 52.381 0.00 0.00 0.00 3.01
2936 7339 2.894902 CCGAGCTTTAAGGGAGAGTTC 58.105 52.381 0.00 0.00 0.00 3.01
2937 7340 2.418884 CCGAGCTTTAAGGGAGAGTTCC 60.419 54.545 0.00 0.00 43.23 3.62
2938 7341 2.735762 CGAGCTTTAAGGGAGAGTTCCG 60.736 54.545 0.00 0.00 45.04 4.30
2939 7342 2.234168 GAGCTTTAAGGGAGAGTTCCGT 59.766 50.000 0.00 0.00 45.04 4.69
2940 7343 2.234168 AGCTTTAAGGGAGAGTTCCGTC 59.766 50.000 0.00 0.00 45.04 4.79
2941 7344 2.028385 GCTTTAAGGGAGAGTTCCGTCA 60.028 50.000 0.00 0.00 45.04 4.35
2942 7345 3.851098 CTTTAAGGGAGAGTTCCGTCAG 58.149 50.000 0.00 0.00 45.04 3.51
2943 7346 1.183549 TAAGGGAGAGTTCCGTCAGC 58.816 55.000 0.00 0.00 45.04 4.26
2944 7347 0.832135 AAGGGAGAGTTCCGTCAGCA 60.832 55.000 0.00 0.00 45.04 4.41
2945 7348 1.079750 GGGAGAGTTCCGTCAGCAC 60.080 63.158 0.00 0.00 45.04 4.40
2946 7349 1.444553 GGAGAGTTCCGTCAGCACG 60.445 63.158 0.00 0.00 46.29 5.34
2975 7378 6.445267 GTGATGACGATGATGATGTTCTAC 57.555 41.667 0.00 0.00 0.00 2.59
2976 7379 5.403766 GTGATGACGATGATGATGTTCTACC 59.596 44.000 0.00 0.00 0.00 3.18
2977 7380 3.964909 TGACGATGATGATGTTCTACCG 58.035 45.455 0.00 0.00 0.00 4.02
2978 7381 3.630312 TGACGATGATGATGTTCTACCGA 59.370 43.478 0.00 0.00 0.00 4.69
2979 7382 3.966154 ACGATGATGATGTTCTACCGAC 58.034 45.455 0.00 0.00 0.00 4.79
2980 7383 2.973879 CGATGATGATGTTCTACCGACG 59.026 50.000 0.00 0.00 0.00 5.12
2981 7384 2.203800 TGATGATGTTCTACCGACGC 57.796 50.000 0.00 0.00 0.00 5.19
2982 7385 1.474879 TGATGATGTTCTACCGACGCA 59.525 47.619 0.00 0.00 0.00 5.24
2983 7386 2.120232 GATGATGTTCTACCGACGCAG 58.880 52.381 0.00 0.00 0.00 5.18
2984 7387 0.172578 TGATGTTCTACCGACGCAGG 59.827 55.000 0.00 0.00 37.30 4.85
2985 7388 0.527817 GATGTTCTACCGACGCAGGG 60.528 60.000 1.73 0.00 35.02 4.45
2986 7389 2.508663 GTTCTACCGACGCAGGGC 60.509 66.667 1.73 0.00 35.02 5.19
2987 7390 2.678934 TTCTACCGACGCAGGGCT 60.679 61.111 1.73 0.00 35.02 5.19
2988 7391 2.280552 TTCTACCGACGCAGGGCTT 61.281 57.895 1.73 0.00 35.02 4.35
2989 7392 2.202756 CTACCGACGCAGGGCTTC 60.203 66.667 1.73 0.00 35.02 3.86
2990 7393 4.124351 TACCGACGCAGGGCTTCG 62.124 66.667 9.73 9.73 47.00 3.79
3003 7406 2.125512 CTTCGCCTAAGCACCGCT 60.126 61.111 0.00 0.00 42.56 5.52
3004 7407 1.141019 CTTCGCCTAAGCACCGCTA 59.859 57.895 0.00 0.00 38.25 4.26
3005 7408 1.146358 CTTCGCCTAAGCACCGCTAC 61.146 60.000 0.00 0.00 38.25 3.58
3006 7409 2.877360 TTCGCCTAAGCACCGCTACG 62.877 60.000 0.00 0.00 38.25 3.51
3007 7410 2.493030 GCCTAAGCACCGCTACGA 59.507 61.111 0.00 0.00 38.25 3.43
3008 7411 1.067582 GCCTAAGCACCGCTACGAT 59.932 57.895 0.00 0.00 38.25 3.73
3009 7412 0.313043 GCCTAAGCACCGCTACGATA 59.687 55.000 0.00 0.00 38.25 2.92
3010 7413 1.067776 GCCTAAGCACCGCTACGATAT 60.068 52.381 0.00 0.00 38.25 1.63
3011 7414 2.609737 GCCTAAGCACCGCTACGATATT 60.610 50.000 0.00 0.00 38.25 1.28
3012 7415 3.366679 GCCTAAGCACCGCTACGATATTA 60.367 47.826 0.00 0.00 38.25 0.98
3013 7416 4.677250 GCCTAAGCACCGCTACGATATTAT 60.677 45.833 0.00 0.00 38.25 1.28
3014 7417 5.035443 CCTAAGCACCGCTACGATATTATC 58.965 45.833 0.00 0.00 38.25 1.75
3032 7435 9.132923 GATATTATCGAGGTAGATTATGGTGGA 57.867 37.037 0.00 0.00 32.39 4.02
3033 7436 6.835819 TTATCGAGGTAGATTATGGTGGAG 57.164 41.667 0.00 0.00 32.39 3.86
3034 7437 3.497332 TCGAGGTAGATTATGGTGGAGG 58.503 50.000 0.00 0.00 0.00 4.30
3035 7438 3.139584 TCGAGGTAGATTATGGTGGAGGA 59.860 47.826 0.00 0.00 0.00 3.71
3036 7439 3.508012 CGAGGTAGATTATGGTGGAGGAG 59.492 52.174 0.00 0.00 0.00 3.69
3037 7440 3.835395 GAGGTAGATTATGGTGGAGGAGG 59.165 52.174 0.00 0.00 0.00 4.30
3038 7441 2.907042 GGTAGATTATGGTGGAGGAGGG 59.093 54.545 0.00 0.00 0.00 4.30
3039 7442 1.439543 AGATTATGGTGGAGGAGGGC 58.560 55.000 0.00 0.00 0.00 5.19
3040 7443 1.140312 GATTATGGTGGAGGAGGGCA 58.860 55.000 0.00 0.00 0.00 5.36
3041 7444 0.846693 ATTATGGTGGAGGAGGGCAC 59.153 55.000 0.00 0.00 0.00 5.01
3055 7458 3.788766 GCACCGCACACCGCTAAG 61.789 66.667 0.00 0.00 39.08 2.18
3056 7459 2.048597 CACCGCACACCGCTAAGA 60.049 61.111 0.00 0.00 39.08 2.10
3057 7460 2.094659 CACCGCACACCGCTAAGAG 61.095 63.158 0.00 0.00 39.08 2.85
3058 7461 2.273179 ACCGCACACCGCTAAGAGA 61.273 57.895 0.00 0.00 39.08 3.10
3059 7462 1.141881 CCGCACACCGCTAAGAGAT 59.858 57.895 0.00 0.00 39.08 2.75
3060 7463 0.872021 CCGCACACCGCTAAGAGATC 60.872 60.000 0.00 0.00 39.08 2.75
3061 7464 0.179137 CGCACACCGCTAAGAGATCA 60.179 55.000 0.00 0.00 39.08 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.876357 TGTCCTCAACAGGCTAATTTAGTT 58.124 37.500 5.38 0.00 40.12 2.24
2 3 5.297776 CCATGTCCTCAACAGGCTAATTTAG 59.702 44.000 0.00 0.00 42.37 1.85
3 4 5.192927 CCATGTCCTCAACAGGCTAATTTA 58.807 41.667 0.00 0.00 42.37 1.40
7 8 1.985159 ACCATGTCCTCAACAGGCTAA 59.015 47.619 0.00 0.00 42.37 3.09
8 9 1.656587 ACCATGTCCTCAACAGGCTA 58.343 50.000 0.00 0.00 42.37 3.93
10 11 1.270550 CAAACCATGTCCTCAACAGGC 59.729 52.381 0.00 0.00 42.37 4.85
11 12 2.862541 TCAAACCATGTCCTCAACAGG 58.137 47.619 0.00 0.00 42.37 4.00
12 13 5.458041 AAATCAAACCATGTCCTCAACAG 57.542 39.130 0.00 0.00 42.37 3.16
13 14 6.775142 TCTTAAATCAAACCATGTCCTCAACA 59.225 34.615 0.00 0.00 43.51 3.33
14 15 7.214467 TCTTAAATCAAACCATGTCCTCAAC 57.786 36.000 0.00 0.00 0.00 3.18
15 16 7.831691 TTCTTAAATCAAACCATGTCCTCAA 57.168 32.000 0.00 0.00 0.00 3.02
16 17 7.831691 TTTCTTAAATCAAACCATGTCCTCA 57.168 32.000 0.00 0.00 0.00 3.86
17 18 9.710900 ATTTTTCTTAAATCAAACCATGTCCTC 57.289 29.630 0.00 0.00 0.00 3.71
19 20 9.487790 TGATTTTTCTTAAATCAAACCATGTCC 57.512 29.630 9.74 0.00 41.92 4.02
81 82 7.325660 ACATGCTTTATTCACACCTTCATAG 57.674 36.000 0.00 0.00 0.00 2.23
82 83 6.318648 GGACATGCTTTATTCACACCTTCATA 59.681 38.462 0.00 0.00 0.00 2.15
83 84 5.126061 GGACATGCTTTATTCACACCTTCAT 59.874 40.000 0.00 0.00 0.00 2.57
84 85 4.458989 GGACATGCTTTATTCACACCTTCA 59.541 41.667 0.00 0.00 0.00 3.02
85 86 4.702131 AGGACATGCTTTATTCACACCTTC 59.298 41.667 0.00 0.00 0.00 3.46
86 87 4.666512 AGGACATGCTTTATTCACACCTT 58.333 39.130 0.00 0.00 0.00 3.50
87 88 4.307032 AGGACATGCTTTATTCACACCT 57.693 40.909 0.00 0.00 0.00 4.00
116 117 3.314553 GACCTTTCGTTGATCTTCGTGA 58.685 45.455 9.17 0.00 0.00 4.35
119 120 2.960819 AGGACCTTTCGTTGATCTTCG 58.039 47.619 0.00 0.00 0.00 3.79
130 131 9.205719 CTTTGTACTTTCTTACTAGGACCTTTC 57.794 37.037 0.00 0.00 0.00 2.62
132 133 8.260099 ACTTTGTACTTTCTTACTAGGACCTT 57.740 34.615 0.00 0.00 0.00 3.50
133 134 7.852550 ACTTTGTACTTTCTTACTAGGACCT 57.147 36.000 0.00 0.00 0.00 3.85
212 213 6.480524 TGTGGAAAATCTAAACATCGTCTG 57.519 37.500 0.00 0.00 0.00 3.51
213 214 7.607991 AGAATGTGGAAAATCTAAACATCGTCT 59.392 33.333 0.00 0.00 0.00 4.18
214 215 7.752695 AGAATGTGGAAAATCTAAACATCGTC 58.247 34.615 0.00 0.00 0.00 4.20
226 228 4.201851 CGCTCATTCGAGAATGTGGAAAAT 60.202 41.667 20.99 0.00 46.15 1.82
254 256 9.921637 ATTCGTACACATATTTTTGGTCAAATT 57.078 25.926 0.00 0.00 0.00 1.82
257 259 9.995957 CATATTCGTACACATATTTTTGGTCAA 57.004 29.630 0.00 0.00 0.00 3.18
258 260 8.126074 GCATATTCGTACACATATTTTTGGTCA 58.874 33.333 0.00 0.00 0.00 4.02
259 261 8.126074 TGCATATTCGTACACATATTTTTGGTC 58.874 33.333 0.00 0.00 0.00 4.02
327 329 6.775629 TGCAACCTAAAAGAAAATGTCTACCT 59.224 34.615 0.00 0.00 34.56 3.08
496 561 9.505995 CTTTTGGTACGTACTGTGTTAAAAATT 57.494 29.630 24.07 0.00 0.00 1.82
497 562 8.676401 ACTTTTGGTACGTACTGTGTTAAAAAT 58.324 29.630 24.07 10.04 0.00 1.82
572 826 3.798337 CGCATGAATGAGTAAAAATGGCC 59.202 43.478 0.00 0.00 0.00 5.36
577 832 6.405286 CCATAACCCGCATGAATGAGTAAAAA 60.405 38.462 0.00 0.00 0.00 1.94
593 848 0.762418 TGGTGGCTATCCATAACCCG 59.238 55.000 0.00 0.00 45.62 5.28
616 871 7.686438 AAATGTTCTTGATGCATGTAGTACA 57.314 32.000 2.46 11.32 0.00 2.90
685 944 4.077822 GCAAAAGCATGGGAGCTAGATAT 58.922 43.478 0.00 0.00 45.89 1.63
722 981 6.413892 TCACAAAGCTCCATATTACATGTGA 58.586 36.000 9.11 0.00 41.44 3.58
758 1017 5.496556 TGACGTGATTGGTGGAGATTTTAT 58.503 37.500 0.00 0.00 0.00 1.40
772 1031 7.223777 CCAGTTTTTGGTTAATTTGACGTGATT 59.776 33.333 0.00 0.00 42.41 2.57
798 1057 5.585047 GTGGAGTAATATTTCCGGGCATATC 59.415 44.000 0.00 0.00 36.22 1.63
833 1092 2.758423 TGCATCTACCTGTGTACACGAT 59.242 45.455 20.61 13.39 0.00 3.73
834 1093 2.164338 TGCATCTACCTGTGTACACGA 58.836 47.619 20.61 11.70 0.00 4.35
845 1104 2.664402 ATTGTGGGGATGCATCTACC 57.336 50.000 25.28 25.04 0.00 3.18
943 1202 5.941058 TGTTCTTGGAGTTGTGTGTTTCTTA 59.059 36.000 0.00 0.00 0.00 2.10
944 1203 4.764823 TGTTCTTGGAGTTGTGTGTTTCTT 59.235 37.500 0.00 0.00 0.00 2.52
956 1215 0.107410 TTGGCGTGTGTTCTTGGAGT 60.107 50.000 0.00 0.00 0.00 3.85
957 1216 0.588252 CTTGGCGTGTGTTCTTGGAG 59.412 55.000 0.00 0.00 0.00 3.86
958 1217 0.179234 TCTTGGCGTGTGTTCTTGGA 59.821 50.000 0.00 0.00 0.00 3.53
960 1219 2.450160 GTTTCTTGGCGTGTGTTCTTG 58.550 47.619 0.00 0.00 0.00 3.02
961 1220 1.404035 GGTTTCTTGGCGTGTGTTCTT 59.596 47.619 0.00 0.00 0.00 2.52
970 1229 2.539688 GCTTTTCTTTGGTTTCTTGGCG 59.460 45.455 0.00 0.00 0.00 5.69
971 1230 3.530535 TGCTTTTCTTTGGTTTCTTGGC 58.469 40.909 0.00 0.00 0.00 4.52
972 1231 4.034394 GCTTGCTTTTCTTTGGTTTCTTGG 59.966 41.667 0.00 0.00 0.00 3.61
973 1232 4.630940 TGCTTGCTTTTCTTTGGTTTCTTG 59.369 37.500 0.00 0.00 0.00 3.02
974 1233 4.831107 TGCTTGCTTTTCTTTGGTTTCTT 58.169 34.783 0.00 0.00 0.00 2.52
976 1235 3.001634 GCTGCTTGCTTTTCTTTGGTTTC 59.998 43.478 0.00 0.00 38.95 2.78
979 2755 1.202568 GGCTGCTTGCTTTTCTTTGGT 60.203 47.619 0.00 0.00 42.39 3.67
1037 2813 1.562783 GCTGGAAGAGTACTGGGAGT 58.437 55.000 0.00 0.00 34.07 3.85
1299 3126 2.752640 TACCTGAGCGCGGCTACA 60.753 61.111 8.83 5.54 39.88 2.74
1363 5700 4.521062 CAGGAAGGCGAGCTCCGG 62.521 72.222 8.47 0.00 36.78 5.14
1392 5729 1.139095 GTCGACGATCTCGGCCTTT 59.861 57.895 0.00 0.00 46.52 3.11
1831 6168 1.940613 GGTCGTGTTCTTCTTGCAGTT 59.059 47.619 0.00 0.00 0.00 3.16
1887 6239 0.689623 CTCCTTTGGCAGTCTCCACT 59.310 55.000 0.00 0.00 35.50 4.00
1938 6290 1.134367 CTCTTTACTCCGGCGATGTCA 59.866 52.381 9.30 0.00 0.00 3.58
2127 6500 8.957466 CGAACAGGATCAACATATAGGAGTATA 58.043 37.037 0.00 0.00 0.00 1.47
2128 6501 7.451877 ACGAACAGGATCAACATATAGGAGTAT 59.548 37.037 0.00 0.00 0.00 2.12
2129 6502 6.776116 ACGAACAGGATCAACATATAGGAGTA 59.224 38.462 0.00 0.00 0.00 2.59
2130 6503 5.598830 ACGAACAGGATCAACATATAGGAGT 59.401 40.000 0.00 0.00 0.00 3.85
2131 6504 5.923114 CACGAACAGGATCAACATATAGGAG 59.077 44.000 0.00 0.00 0.00 3.69
2132 6505 5.221441 CCACGAACAGGATCAACATATAGGA 60.221 44.000 0.00 0.00 0.00 2.94
2133 6506 4.991056 CCACGAACAGGATCAACATATAGG 59.009 45.833 0.00 0.00 0.00 2.57
2134 6507 5.842907 TCCACGAACAGGATCAACATATAG 58.157 41.667 0.00 0.00 0.00 1.31
2170 6543 5.119898 CGACTTGAAATTGAGTTCTCCAGAG 59.880 44.000 0.00 0.00 0.00 3.35
2175 6561 6.310197 CAATCCGACTTGAAATTGAGTTCTC 58.690 40.000 0.00 0.00 32.14 2.87
2240 6634 8.048016 ACCTCTCTAGCTAGAATTCCTAGTTA 57.952 38.462 23.37 10.49 45.26 2.24
2270 6664 2.663606 GCAACAAACATCGTCGGGTTAC 60.664 50.000 4.11 0.00 0.00 2.50
2324 6723 6.068010 TGAGAAGGCAGAATGGAACTTTTTA 58.932 36.000 0.00 0.00 35.86 1.52
2454 6854 7.930513 AGTAAACATTTTTAACTGCTTGCTC 57.069 32.000 0.00 0.00 0.00 4.26
2600 7003 3.506844 GCCAAAAATGGGTGCAATTGAAT 59.493 39.130 10.34 0.00 0.00 2.57
2637 7040 7.409697 TCGAATTTATGATAAACTCAAGCAGC 58.590 34.615 7.11 0.00 37.44 5.25
2676 7079 4.970711 TGAAATTACTACGTTCCCCAACA 58.029 39.130 0.00 0.00 32.14 3.33
2677 7080 5.945466 TTGAAATTACTACGTTCCCCAAC 57.055 39.130 0.00 0.00 0.00 3.77
2678 7081 6.956202 TTTTGAAATTACTACGTTCCCCAA 57.044 33.333 0.00 0.00 0.00 4.12
2679 7082 6.956202 TTTTTGAAATTACTACGTTCCCCA 57.044 33.333 0.00 0.00 0.00 4.96
2700 7103 5.493133 TCTTGTGTGTGCGTAGAATTTTT 57.507 34.783 0.00 0.00 0.00 1.94
2701 7104 5.238432 TGATCTTGTGTGTGCGTAGAATTTT 59.762 36.000 0.00 0.00 0.00 1.82
2702 7105 4.754618 TGATCTTGTGTGTGCGTAGAATTT 59.245 37.500 0.00 0.00 0.00 1.82
2703 7106 4.314961 TGATCTTGTGTGTGCGTAGAATT 58.685 39.130 0.00 0.00 0.00 2.17
2704 7107 3.925379 TGATCTTGTGTGTGCGTAGAAT 58.075 40.909 0.00 0.00 0.00 2.40
2705 7108 3.378911 TGATCTTGTGTGTGCGTAGAA 57.621 42.857 0.00 0.00 0.00 2.10
2706 7109 3.253230 CATGATCTTGTGTGTGCGTAGA 58.747 45.455 0.44 0.00 0.00 2.59
2707 7110 2.349580 CCATGATCTTGTGTGTGCGTAG 59.650 50.000 7.73 0.00 0.00 3.51
2708 7111 2.289382 ACCATGATCTTGTGTGTGCGTA 60.289 45.455 7.73 0.00 0.00 4.42
2709 7112 1.159285 CCATGATCTTGTGTGTGCGT 58.841 50.000 7.73 0.00 0.00 5.24
2710 7113 1.135888 CACCATGATCTTGTGTGTGCG 60.136 52.381 15.81 1.66 0.00 5.34
2711 7114 2.153645 TCACCATGATCTTGTGTGTGC 58.846 47.619 19.89 0.00 0.00 4.57
2712 7115 3.427098 GCATCACCATGATCTTGTGTGTG 60.427 47.826 19.89 14.96 34.28 3.82
2713 7116 2.751259 GCATCACCATGATCTTGTGTGT 59.249 45.455 19.89 6.63 34.28 3.72
2714 7117 2.750712 TGCATCACCATGATCTTGTGTG 59.249 45.455 17.02 17.02 34.28 3.82
2715 7118 3.076079 TGCATCACCATGATCTTGTGT 57.924 42.857 7.73 3.11 34.28 3.72
2716 7119 4.320275 GCTATGCATCACCATGATCTTGTG 60.320 45.833 0.19 5.83 34.28 3.33
2717 7120 3.819337 GCTATGCATCACCATGATCTTGT 59.181 43.478 0.19 0.00 34.28 3.16
2718 7121 3.818773 TGCTATGCATCACCATGATCTTG 59.181 43.478 0.19 1.60 34.28 3.02
2719 7122 4.094830 TGCTATGCATCACCATGATCTT 57.905 40.909 0.19 0.00 34.28 2.40
2720 7123 3.782656 TGCTATGCATCACCATGATCT 57.217 42.857 0.19 0.00 34.28 2.75
2721 7124 3.364664 CGTTGCTATGCATCACCATGATC 60.365 47.826 0.19 0.00 38.76 2.92
2722 7125 2.551032 CGTTGCTATGCATCACCATGAT 59.449 45.455 0.19 0.00 38.76 2.45
2723 7126 1.941975 CGTTGCTATGCATCACCATGA 59.058 47.619 0.19 0.00 38.76 3.07
2724 7127 1.941975 TCGTTGCTATGCATCACCATG 59.058 47.619 0.19 0.00 38.76 3.66
2725 7128 2.158914 TCTCGTTGCTATGCATCACCAT 60.159 45.455 0.19 0.00 38.76 3.55
2726 7129 1.206849 TCTCGTTGCTATGCATCACCA 59.793 47.619 0.19 0.00 38.76 4.17
2727 7130 1.863454 CTCTCGTTGCTATGCATCACC 59.137 52.381 0.19 0.00 38.76 4.02
2728 7131 1.863454 CCTCTCGTTGCTATGCATCAC 59.137 52.381 0.19 0.00 38.76 3.06
2729 7132 1.202568 CCCTCTCGTTGCTATGCATCA 60.203 52.381 0.19 0.00 38.76 3.07
2730 7133 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
2731 7134 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
2732 7135 0.975556 TCCCCTCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
2733 7136 0.249657 CTCCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
2734 7137 1.339610 CTCTCCCCTCTCGTTGCTATG 59.660 57.143 0.00 0.00 0.00 2.23
2735 7138 1.063567 ACTCTCCCCTCTCGTTGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
2736 7139 0.331954 ACTCTCCCCTCTCGTTGCTA 59.668 55.000 0.00 0.00 0.00 3.49
2737 7140 0.331954 TACTCTCCCCTCTCGTTGCT 59.668 55.000 0.00 0.00 0.00 3.91
2738 7141 1.404843 ATACTCTCCCCTCTCGTTGC 58.595 55.000 0.00 0.00 0.00 4.17
2739 7142 2.761208 ACAATACTCTCCCCTCTCGTTG 59.239 50.000 0.00 0.00 0.00 4.10
2740 7143 3.025262 GACAATACTCTCCCCTCTCGTT 58.975 50.000 0.00 0.00 0.00 3.85
2741 7144 2.657143 GACAATACTCTCCCCTCTCGT 58.343 52.381 0.00 0.00 0.00 4.18
2742 7145 1.957877 GGACAATACTCTCCCCTCTCG 59.042 57.143 0.00 0.00 0.00 4.04
2743 7146 2.696187 GTGGACAATACTCTCCCCTCTC 59.304 54.545 0.00 0.00 0.00 3.20
2744 7147 2.753247 GTGGACAATACTCTCCCCTCT 58.247 52.381 0.00 0.00 0.00 3.69
2745 7148 1.409427 CGTGGACAATACTCTCCCCTC 59.591 57.143 0.00 0.00 0.00 4.30
2746 7149 1.273098 ACGTGGACAATACTCTCCCCT 60.273 52.381 0.00 0.00 0.00 4.79
2747 7150 1.192428 ACGTGGACAATACTCTCCCC 58.808 55.000 0.00 0.00 0.00 4.81
2748 7151 2.100418 GGTACGTGGACAATACTCTCCC 59.900 54.545 0.00 0.00 0.00 4.30
2749 7152 2.100418 GGGTACGTGGACAATACTCTCC 59.900 54.545 0.00 0.00 0.00 3.71
2750 7153 3.022406 AGGGTACGTGGACAATACTCTC 58.978 50.000 0.00 0.00 0.00 3.20
2751 7154 3.022406 GAGGGTACGTGGACAATACTCT 58.978 50.000 0.00 0.00 32.17 3.24
2752 7155 2.223433 CGAGGGTACGTGGACAATACTC 60.223 54.545 0.00 0.00 0.00 2.59
2753 7156 1.747355 CGAGGGTACGTGGACAATACT 59.253 52.381 0.00 0.00 0.00 2.12
2754 7157 1.474077 ACGAGGGTACGTGGACAATAC 59.526 52.381 0.00 0.00 44.84 1.89
2755 7158 1.838112 ACGAGGGTACGTGGACAATA 58.162 50.000 0.00 0.00 44.84 1.90
2756 7159 1.747355 CTACGAGGGTACGTGGACAAT 59.253 52.381 0.00 0.00 44.98 2.71
2757 7160 1.167851 CTACGAGGGTACGTGGACAA 58.832 55.000 0.00 0.00 44.98 3.18
2758 7161 0.324614 TCTACGAGGGTACGTGGACA 59.675 55.000 0.00 0.00 45.53 4.02
2759 7162 3.159298 TCTACGAGGGTACGTGGAC 57.841 57.895 0.00 0.00 45.53 4.02
2761 7164 2.101700 GGTCTACGAGGGTACGTGG 58.898 63.158 0.00 0.00 46.02 4.94
2779 7182 1.058903 GCTAACGCTTCCGCTTTCG 59.941 57.895 0.00 0.00 38.22 3.46
2780 7183 0.179222 GTGCTAACGCTTCCGCTTTC 60.179 55.000 0.00 0.00 38.22 2.62
2781 7184 0.882927 TGTGCTAACGCTTCCGCTTT 60.883 50.000 0.00 0.00 38.22 3.51
2782 7185 0.882927 TTGTGCTAACGCTTCCGCTT 60.883 50.000 0.00 0.00 38.22 4.68
2783 7186 1.301401 TTGTGCTAACGCTTCCGCT 60.301 52.632 0.00 0.00 38.22 5.52
2784 7187 1.154469 GTTGTGCTAACGCTTCCGC 60.154 57.895 0.00 0.00 38.22 5.54
2785 7188 1.129809 CGTTGTGCTAACGCTTCCG 59.870 57.895 12.46 0.00 36.82 4.30
2791 7194 1.438059 CAACCGCGTTGTGCTAACG 60.438 57.895 18.25 18.25 45.56 3.18
2792 7195 0.515564 ATCAACCGCGTTGTGCTAAC 59.484 50.000 16.97 0.00 43.23 2.34
2793 7196 0.515127 CATCAACCGCGTTGTGCTAA 59.485 50.000 16.97 2.99 43.23 3.09
2794 7197 0.601576 ACATCAACCGCGTTGTGCTA 60.602 50.000 16.97 3.28 43.23 3.49
2795 7198 0.601576 TACATCAACCGCGTTGTGCT 60.602 50.000 16.97 6.88 43.23 4.40
2796 7199 0.179225 CTACATCAACCGCGTTGTGC 60.179 55.000 16.97 0.00 43.23 4.57
2797 7200 1.126113 GACTACATCAACCGCGTTGTG 59.874 52.381 16.97 15.92 43.23 3.33
2798 7201 1.425412 GACTACATCAACCGCGTTGT 58.575 50.000 16.97 9.99 43.23 3.32
2799 7202 0.365523 CGACTACATCAACCGCGTTG 59.634 55.000 4.92 10.14 43.99 4.10
2800 7203 0.038892 ACGACTACATCAACCGCGTT 60.039 50.000 4.92 0.00 0.00 4.84
2801 7204 0.804364 TACGACTACATCAACCGCGT 59.196 50.000 4.92 0.00 0.00 6.01
2802 7205 1.186030 GTACGACTACATCAACCGCG 58.814 55.000 0.00 0.00 0.00 6.46
2803 7206 1.186030 CGTACGACTACATCAACCGC 58.814 55.000 10.44 0.00 0.00 5.68
2804 7207 2.094894 AGACGTACGACTACATCAACCG 59.905 50.000 24.41 0.00 0.00 4.44
2805 7208 3.754188 AGACGTACGACTACATCAACC 57.246 47.619 24.41 0.00 0.00 3.77
2806 7209 4.552660 GTGAAGACGTACGACTACATCAAC 59.447 45.833 24.41 11.90 0.00 3.18
2807 7210 4.667415 CGTGAAGACGTACGACTACATCAA 60.667 45.833 24.41 4.49 42.54 2.57
2808 7211 3.181527 CGTGAAGACGTACGACTACATCA 60.182 47.826 24.41 18.00 42.54 3.07
2809 7212 3.061295 TCGTGAAGACGTACGACTACATC 59.939 47.826 24.41 15.62 46.20 3.06
2810 7213 2.995939 TCGTGAAGACGTACGACTACAT 59.004 45.455 24.41 6.17 46.20 2.29
2811 7214 2.403259 TCGTGAAGACGTACGACTACA 58.597 47.619 24.41 13.28 46.20 2.74
2817 7220 0.371301 TCGGATCGTGAAGACGTACG 59.629 55.000 15.01 15.01 46.20 3.67
2818 7221 1.530646 GGTCGGATCGTGAAGACGTAC 60.531 57.143 0.00 0.00 46.20 3.67
2819 7222 0.729116 GGTCGGATCGTGAAGACGTA 59.271 55.000 0.00 0.00 46.20 3.57
2820 7223 1.505353 GGTCGGATCGTGAAGACGT 59.495 57.895 0.00 0.00 46.20 4.34
2822 7225 0.381089 ATCGGTCGGATCGTGAAGAC 59.619 55.000 10.85 0.00 0.00 3.01
2823 7226 0.661552 GATCGGTCGGATCGTGAAGA 59.338 55.000 10.85 0.00 42.02 2.87
2824 7227 3.165559 GATCGGTCGGATCGTGAAG 57.834 57.895 10.85 0.00 42.02 3.02
2831 7234 0.666913 CGGTACTTGATCGGTCGGAT 59.333 55.000 0.00 0.00 38.35 4.18
2832 7235 0.392863 TCGGTACTTGATCGGTCGGA 60.393 55.000 0.00 0.00 30.29 4.55
2833 7236 0.452987 TTCGGTACTTGATCGGTCGG 59.547 55.000 0.00 0.00 30.29 4.79
2834 7237 1.542544 GTTCGGTACTTGATCGGTCG 58.457 55.000 0.00 0.00 30.29 4.79
2835 7238 1.542544 CGTTCGGTACTTGATCGGTC 58.457 55.000 9.70 0.00 30.29 4.79
2836 7239 0.457337 GCGTTCGGTACTTGATCGGT 60.457 55.000 15.69 0.00 30.29 4.69
2837 7240 0.457166 TGCGTTCGGTACTTGATCGG 60.457 55.000 15.69 0.00 30.29 4.18
2838 7241 0.638746 GTGCGTTCGGTACTTGATCG 59.361 55.000 11.98 11.98 0.00 3.69
2839 7242 0.638746 CGTGCGTTCGGTACTTGATC 59.361 55.000 0.00 0.00 0.00 2.92
2840 7243 0.734942 CCGTGCGTTCGGTACTTGAT 60.735 55.000 11.17 0.00 44.77 2.57
2841 7244 1.372004 CCGTGCGTTCGGTACTTGA 60.372 57.895 11.17 0.00 44.77 3.02
2842 7245 3.152703 CCGTGCGTTCGGTACTTG 58.847 61.111 11.17 0.00 44.77 3.16
2858 7261 2.435059 GCTGAACTCGGAGGTGCC 60.435 66.667 10.23 0.00 0.00 5.01
2859 7262 2.029844 GTGCTGAACTCGGAGGTGC 61.030 63.158 10.23 4.15 0.00 5.01
2860 7263 0.946221 GTGTGCTGAACTCGGAGGTG 60.946 60.000 10.23 0.00 0.00 4.00
2861 7264 1.367840 GTGTGCTGAACTCGGAGGT 59.632 57.895 10.23 1.51 0.00 3.85
2862 7265 1.734477 CGTGTGCTGAACTCGGAGG 60.734 63.158 10.23 0.00 41.05 4.30
2863 7266 3.848142 CGTGTGCTGAACTCGGAG 58.152 61.111 2.83 2.83 41.05 4.63
2867 7270 0.233332 GCTGAACGTGTGCTGAACTC 59.767 55.000 0.00 0.00 0.00 3.01
2868 7271 0.179073 AGCTGAACGTGTGCTGAACT 60.179 50.000 8.99 0.00 35.54 3.01
2869 7272 0.233332 GAGCTGAACGTGTGCTGAAC 59.767 55.000 13.62 0.00 37.16 3.18
2870 7273 1.215014 CGAGCTGAACGTGTGCTGAA 61.215 55.000 13.62 0.00 37.16 3.02
2871 7274 1.661509 CGAGCTGAACGTGTGCTGA 60.662 57.895 13.62 0.00 37.16 4.26
2872 7275 1.010935 ATCGAGCTGAACGTGTGCTG 61.011 55.000 13.62 7.51 37.16 4.41
2873 7276 1.010935 CATCGAGCTGAACGTGTGCT 61.011 55.000 9.46 9.46 40.02 4.40
2874 7277 1.008875 TCATCGAGCTGAACGTGTGC 61.009 55.000 0.00 0.00 0.00 4.57
2875 7278 0.710567 GTCATCGAGCTGAACGTGTG 59.289 55.000 0.00 0.00 0.00 3.82
2876 7279 0.313987 TGTCATCGAGCTGAACGTGT 59.686 50.000 0.00 0.00 0.00 4.49
2877 7280 1.585668 GATGTCATCGAGCTGAACGTG 59.414 52.381 0.00 0.00 0.00 4.49
2878 7281 1.469940 GGATGTCATCGAGCTGAACGT 60.470 52.381 6.74 0.00 0.00 3.99
2879 7282 1.203928 GGATGTCATCGAGCTGAACG 58.796 55.000 6.74 0.00 0.00 3.95
2880 7283 1.137872 AGGGATGTCATCGAGCTGAAC 59.862 52.381 6.74 0.00 0.00 3.18
2881 7284 1.410517 GAGGGATGTCATCGAGCTGAA 59.589 52.381 6.74 0.00 0.00 3.02
2882 7285 1.035923 GAGGGATGTCATCGAGCTGA 58.964 55.000 6.74 0.00 0.00 4.26
2883 7286 0.318529 CGAGGGATGTCATCGAGCTG 60.319 60.000 6.74 0.00 38.72 4.24
2884 7287 0.466372 TCGAGGGATGTCATCGAGCT 60.466 55.000 6.74 0.00 40.29 4.09
2885 7288 0.385751 TTCGAGGGATGTCATCGAGC 59.614 55.000 6.74 0.00 45.23 5.03
2886 7289 1.678627 AGTTCGAGGGATGTCATCGAG 59.321 52.381 6.74 0.00 45.23 4.04
2887 7290 1.676529 GAGTTCGAGGGATGTCATCGA 59.323 52.381 6.74 0.00 43.19 3.59
2888 7291 1.269309 GGAGTTCGAGGGATGTCATCG 60.269 57.143 6.74 0.00 37.79 3.84
2889 7292 1.269309 CGGAGTTCGAGGGATGTCATC 60.269 57.143 4.06 4.06 42.43 2.92
2890 7293 0.747255 CGGAGTTCGAGGGATGTCAT 59.253 55.000 0.00 0.00 42.43 3.06
2891 7294 0.323087 TCGGAGTTCGAGGGATGTCA 60.323 55.000 0.00 0.00 43.74 3.58
2892 7295 2.490165 TCGGAGTTCGAGGGATGTC 58.510 57.895 0.00 0.00 43.74 3.06
2893 7296 4.757773 TCGGAGTTCGAGGGATGT 57.242 55.556 0.00 0.00 43.74 3.06
2901 7304 2.278857 CGGCTGGATCGGAGTTCG 60.279 66.667 0.00 0.00 40.90 3.95
2902 7305 1.066587 CTCGGCTGGATCGGAGTTC 59.933 63.158 0.00 0.00 0.00 3.01
2903 7306 3.082579 GCTCGGCTGGATCGGAGTT 62.083 63.158 0.00 0.00 36.27 3.01
2904 7307 3.532155 GCTCGGCTGGATCGGAGT 61.532 66.667 0.00 0.00 36.27 3.85
2905 7308 2.303549 AAAGCTCGGCTGGATCGGAG 62.304 60.000 0.00 0.00 39.62 4.63
2906 7309 1.040893 TAAAGCTCGGCTGGATCGGA 61.041 55.000 0.00 0.00 39.62 4.55
2907 7310 0.179084 TTAAAGCTCGGCTGGATCGG 60.179 55.000 0.00 0.00 39.62 4.18
2908 7311 1.212616 CTTAAAGCTCGGCTGGATCG 58.787 55.000 0.00 0.00 39.62 3.69
2909 7312 1.587547 CCTTAAAGCTCGGCTGGATC 58.412 55.000 0.00 0.00 39.62 3.36
2910 7313 0.181350 CCCTTAAAGCTCGGCTGGAT 59.819 55.000 0.00 0.00 39.62 3.41
2911 7314 0.907704 TCCCTTAAAGCTCGGCTGGA 60.908 55.000 0.00 0.00 39.62 3.86
2912 7315 0.462759 CTCCCTTAAAGCTCGGCTGG 60.463 60.000 0.00 0.00 39.62 4.85
2913 7316 0.537188 TCTCCCTTAAAGCTCGGCTG 59.463 55.000 0.00 0.00 39.62 4.85
2914 7317 0.827368 CTCTCCCTTAAAGCTCGGCT 59.173 55.000 0.00 0.00 42.56 5.52
2915 7318 0.537653 ACTCTCCCTTAAAGCTCGGC 59.462 55.000 0.00 0.00 0.00 5.54
2916 7319 2.418884 GGAACTCTCCCTTAAAGCTCGG 60.419 54.545 0.00 0.00 35.42 4.63
2917 7320 2.735762 CGGAACTCTCCCTTAAAGCTCG 60.736 54.545 0.00 0.00 38.71 5.03
2918 7321 2.234168 ACGGAACTCTCCCTTAAAGCTC 59.766 50.000 0.00 0.00 38.71 4.09
2919 7322 2.234168 GACGGAACTCTCCCTTAAAGCT 59.766 50.000 0.00 0.00 38.71 3.74
2920 7323 2.028385 TGACGGAACTCTCCCTTAAAGC 60.028 50.000 0.00 0.00 38.71 3.51
2921 7324 3.851098 CTGACGGAACTCTCCCTTAAAG 58.149 50.000 0.00 0.00 38.71 1.85
2922 7325 2.028385 GCTGACGGAACTCTCCCTTAAA 60.028 50.000 0.00 0.00 38.71 1.52
2923 7326 1.549170 GCTGACGGAACTCTCCCTTAA 59.451 52.381 0.00 0.00 38.71 1.85
2924 7327 1.183549 GCTGACGGAACTCTCCCTTA 58.816 55.000 0.00 0.00 38.71 2.69
2925 7328 0.832135 TGCTGACGGAACTCTCCCTT 60.832 55.000 0.00 0.00 38.71 3.95
2926 7329 1.228894 TGCTGACGGAACTCTCCCT 60.229 57.895 0.00 0.00 38.71 4.20
2927 7330 1.079750 GTGCTGACGGAACTCTCCC 60.080 63.158 0.00 0.00 38.71 4.30
2928 7331 1.444553 CGTGCTGACGGAACTCTCC 60.445 63.158 0.00 0.00 42.18 3.71
2929 7332 0.729816 GTCGTGCTGACGGAACTCTC 60.730 60.000 0.00 0.00 46.11 3.20
2930 7333 1.286260 GTCGTGCTGACGGAACTCT 59.714 57.895 0.00 0.00 46.11 3.24
2931 7334 3.843985 GTCGTGCTGACGGAACTC 58.156 61.111 0.00 0.00 46.11 3.01
2945 7348 2.277949 ATCGTCATCACGCCGTCG 60.278 61.111 0.00 0.00 46.28 5.12
2946 7349 0.595053 ATCATCGTCATCACGCCGTC 60.595 55.000 0.00 0.00 46.28 4.79
2947 7350 0.871592 CATCATCGTCATCACGCCGT 60.872 55.000 0.00 0.00 46.28 5.68
2948 7351 0.594796 TCATCATCGTCATCACGCCG 60.595 55.000 0.00 0.00 46.28 6.46
2949 7352 1.458445 CATCATCATCGTCATCACGCC 59.542 52.381 0.00 0.00 46.28 5.68
2950 7353 2.130395 ACATCATCATCGTCATCACGC 58.870 47.619 0.00 0.00 46.28 5.34
2952 7355 5.403766 GGTAGAACATCATCATCGTCATCAC 59.596 44.000 0.00 0.00 0.00 3.06
2953 7356 5.532557 GGTAGAACATCATCATCGTCATCA 58.467 41.667 0.00 0.00 0.00 3.07
2954 7357 4.618912 CGGTAGAACATCATCATCGTCATC 59.381 45.833 0.00 0.00 0.00 2.92
2955 7358 4.278419 TCGGTAGAACATCATCATCGTCAT 59.722 41.667 0.00 0.00 0.00 3.06
2956 7359 3.630312 TCGGTAGAACATCATCATCGTCA 59.370 43.478 0.00 0.00 0.00 4.35
2957 7360 3.975670 GTCGGTAGAACATCATCATCGTC 59.024 47.826 0.00 0.00 0.00 4.20
2958 7361 3.548214 CGTCGGTAGAACATCATCATCGT 60.548 47.826 0.00 0.00 0.00 3.73
2959 7362 2.973879 CGTCGGTAGAACATCATCATCG 59.026 50.000 0.00 0.00 0.00 3.84
2960 7363 2.726760 GCGTCGGTAGAACATCATCATC 59.273 50.000 0.00 0.00 0.00 2.92
2961 7364 2.100749 TGCGTCGGTAGAACATCATCAT 59.899 45.455 0.00 0.00 0.00 2.45
2962 7365 1.474879 TGCGTCGGTAGAACATCATCA 59.525 47.619 0.00 0.00 0.00 3.07
2963 7366 2.120232 CTGCGTCGGTAGAACATCATC 58.880 52.381 0.00 0.00 0.00 2.92
2964 7367 1.202417 CCTGCGTCGGTAGAACATCAT 60.202 52.381 0.00 0.00 0.00 2.45
2965 7368 0.172578 CCTGCGTCGGTAGAACATCA 59.827 55.000 0.00 0.00 0.00 3.07
2966 7369 0.527817 CCCTGCGTCGGTAGAACATC 60.528 60.000 0.00 0.00 0.00 3.06
2967 7370 1.515954 CCCTGCGTCGGTAGAACAT 59.484 57.895 0.00 0.00 0.00 2.71
2968 7371 2.967397 CCCTGCGTCGGTAGAACA 59.033 61.111 0.00 0.00 0.00 3.18
2969 7372 2.502692 AAGCCCTGCGTCGGTAGAAC 62.503 60.000 0.00 0.00 0.00 3.01
2970 7373 2.221906 GAAGCCCTGCGTCGGTAGAA 62.222 60.000 0.00 0.00 0.00 2.10
2971 7374 2.678934 AAGCCCTGCGTCGGTAGA 60.679 61.111 0.00 0.00 0.00 2.59
2972 7375 2.202756 GAAGCCCTGCGTCGGTAG 60.203 66.667 0.00 0.00 0.00 3.18
2986 7389 1.141019 TAGCGGTGCTTAGGCGAAG 59.859 57.895 2.68 2.68 40.44 3.79
2987 7390 1.153706 GTAGCGGTGCTTAGGCGAA 60.154 57.895 0.00 0.00 40.44 4.70
2988 7391 2.493030 GTAGCGGTGCTTAGGCGA 59.507 61.111 0.00 0.00 40.44 5.54
2989 7392 2.679132 ATCGTAGCGGTGCTTAGGCG 62.679 60.000 0.00 0.00 40.44 5.52
2990 7393 0.313043 TATCGTAGCGGTGCTTAGGC 59.687 55.000 0.00 0.00 40.44 3.93
2991 7394 3.299340 AATATCGTAGCGGTGCTTAGG 57.701 47.619 0.00 0.00 40.44 2.69
3006 7409 9.132923 TCCACCATAATCTACCTCGATAATATC 57.867 37.037 0.00 0.00 0.00 1.63
3007 7410 9.137459 CTCCACCATAATCTACCTCGATAATAT 57.863 37.037 0.00 0.00 0.00 1.28
3008 7411 7.560262 CCTCCACCATAATCTACCTCGATAATA 59.440 40.741 0.00 0.00 0.00 0.98
3009 7412 6.381420 CCTCCACCATAATCTACCTCGATAAT 59.619 42.308 0.00 0.00 0.00 1.28
3010 7413 5.715279 CCTCCACCATAATCTACCTCGATAA 59.285 44.000 0.00 0.00 0.00 1.75
3011 7414 5.014860 TCCTCCACCATAATCTACCTCGATA 59.985 44.000 0.00 0.00 0.00 2.92
3012 7415 4.090090 CCTCCACCATAATCTACCTCGAT 58.910 47.826 0.00 0.00 0.00 3.59
3013 7416 3.139584 TCCTCCACCATAATCTACCTCGA 59.860 47.826 0.00 0.00 0.00 4.04
3014 7417 3.497332 TCCTCCACCATAATCTACCTCG 58.503 50.000 0.00 0.00 0.00 4.63
3015 7418 3.835395 CCTCCTCCACCATAATCTACCTC 59.165 52.174 0.00 0.00 0.00 3.85
3016 7419 3.440154 CCCTCCTCCACCATAATCTACCT 60.440 52.174 0.00 0.00 0.00 3.08
3017 7420 2.907042 CCCTCCTCCACCATAATCTACC 59.093 54.545 0.00 0.00 0.00 3.18
3018 7421 2.303311 GCCCTCCTCCACCATAATCTAC 59.697 54.545 0.00 0.00 0.00 2.59
3019 7422 2.090210 TGCCCTCCTCCACCATAATCTA 60.090 50.000 0.00 0.00 0.00 1.98
3020 7423 1.345422 TGCCCTCCTCCACCATAATCT 60.345 52.381 0.00 0.00 0.00 2.40
3021 7424 1.140312 TGCCCTCCTCCACCATAATC 58.860 55.000 0.00 0.00 0.00 1.75
3022 7425 0.846693 GTGCCCTCCTCCACCATAAT 59.153 55.000 0.00 0.00 0.00 1.28
3023 7426 2.307153 GTGCCCTCCTCCACCATAA 58.693 57.895 0.00 0.00 0.00 1.90
3024 7427 4.066614 GTGCCCTCCTCCACCATA 57.933 61.111 0.00 0.00 0.00 2.74
3043 7446 3.741029 TGATCTCTTAGCGGTGTGC 57.259 52.632 0.00 0.00 46.98 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.