Multiple sequence alignment - TraesCS3D01G051600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G051600 chr3D 100.000 1543 0 0 923 2465 20562690 20561148 0.000000e+00 2850.0
1 TraesCS3D01G051600 chr3D 100.000 610 0 0 1 610 20563612 20563003 0.000000e+00 1127.0
2 TraesCS3D01G051600 chr3D 83.562 365 36 9 1070 1434 20206232 20205892 1.100000e-83 320.0
3 TraesCS3D01G051600 chr3D 75.333 600 89 32 1072 1656 20232904 20232349 1.470000e-57 233.0
4 TraesCS3D01G051600 chr3D 75.225 444 69 29 1516 1922 20246705 20246266 3.260000e-39 172.0
5 TraesCS3D01G051600 chr3D 72.438 849 126 63 1072 1844 20555540 20554724 3.260000e-39 172.0
6 TraesCS3D01G051600 chr3D 78.906 256 21 12 1060 1309 20333661 20333433 2.560000e-30 143.0
7 TraesCS3D01G051600 chr3D 85.294 102 11 4 1515 1612 20205742 20205641 4.340000e-18 102.0
8 TraesCS3D01G051600 chr3D 82.353 119 9 6 1263 1369 20343078 20342960 2.610000e-15 93.5
9 TraesCS3D01G051600 chr3D 87.059 85 7 2 1914 1996 20561617 20561699 2.610000e-15 93.5
10 TraesCS3D01G051600 chr3D 86.301 73 7 2 1764 1835 20552559 20552489 2.630000e-10 76.8
11 TraesCS3D01G051600 chr3B 90.220 910 45 18 990 1864 32617956 32618856 0.000000e+00 1147.0
12 TraesCS3D01G051600 chr3B 94.130 460 17 2 1035 1494 32948883 32948434 0.000000e+00 691.0
13 TraesCS3D01G051600 chr3B 82.243 749 61 16 1723 2465 33043734 33043052 4.570000e-162 580.0
14 TraesCS3D01G051600 chr3B 84.709 412 29 11 1995 2404 32618872 32619251 4.970000e-102 381.0
15 TraesCS3D01G051600 chr3B 82.727 330 37 14 1338 1656 33044187 33043867 2.410000e-70 276.0
16 TraesCS3D01G051600 chr3B 74.959 603 85 39 1072 1656 32801696 32801142 1.480000e-52 217.0
17 TraesCS3D01G051600 chr3B 84.663 163 18 4 398 554 32949060 32948899 3.280000e-34 156.0
18 TraesCS3D01G051600 chr3B 89.109 101 6 3 1619 1718 32991408 32991312 1.200000e-23 121.0
19 TraesCS3D01G051600 chr3B 86.139 101 8 4 1619 1718 33096411 33096316 1.210000e-18 104.0
20 TraesCS3D01G051600 chr3B 97.222 36 1 0 1307 1342 33046862 33046827 7.360000e-06 62.1
21 TraesCS3D01G051600 chrUn 90.290 896 43 18 990 1850 314376053 314375167 0.000000e+00 1133.0
22 TraesCS3D01G051600 chrUn 84.709 412 29 11 1995 2404 288908949 288908570 4.970000e-102 381.0
23 TraesCS3D01G051600 chr3A 84.924 1048 77 33 1449 2465 28216532 28215535 0.000000e+00 985.0
24 TraesCS3D01G051600 chr3A 90.323 465 28 4 990 1445 28217019 28216563 5.870000e-166 593.0
25 TraesCS3D01G051600 chr3A 84.150 347 52 1 1070 1416 27877048 27876705 1.410000e-87 333.0
26 TraesCS3D01G051600 chr3A 80.157 383 30 24 1515 1861 27876575 27876203 6.810000e-61 244.0
27 TraesCS3D01G051600 chr3A 74.836 608 86 39 1070 1656 27909618 27909057 1.920000e-51 213.0
28 TraesCS3D01G051600 chr3A 81.152 191 15 6 273 446 28217290 28217104 1.540000e-27 134.0
29 TraesCS3D01G051600 chr3A 86.154 65 6 2 990 1051 28050067 28050003 1.580000e-07 67.6
30 TraesCS3D01G051600 chr3A 90.385 52 3 2 89 139 94101322 94101372 1.580000e-07 67.6
31 TraesCS3D01G051600 chr1D 91.367 139 11 1 1 139 488715561 488715698 3.240000e-44 189.0
32 TraesCS3D01G051600 chr5D 88.571 140 14 2 1 139 43388935 43388797 4.220000e-38 169.0
33 TraesCS3D01G051600 chr1B 95.946 74 1 2 923 995 557408651 557408579 4.310000e-23 119.0
34 TraesCS3D01G051600 chr7D 95.652 69 1 2 923 990 98623291 98623224 2.590000e-20 110.0
35 TraesCS3D01G051600 chr7D 96.491 57 2 0 553 609 125908503 125908559 7.260000e-16 95.3
36 TraesCS3D01G051600 chr6B 90.196 51 5 0 89 139 362784227 362784177 1.580000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G051600 chr3D 20561148 20563612 2464 True 1988.500000 2850 100.000000 1 2465 2 chr3D.!!$R7 2464
1 TraesCS3D01G051600 chr3D 20232349 20232904 555 True 233.000000 233 75.333000 1072 1656 1 chr3D.!!$R1 584
2 TraesCS3D01G051600 chr3D 20205641 20206232 591 True 211.000000 320 84.428000 1070 1612 2 chr3D.!!$R5 542
3 TraesCS3D01G051600 chr3B 32617956 32619251 1295 False 764.000000 1147 87.464500 990 2404 2 chr3B.!!$F1 1414
4 TraesCS3D01G051600 chr3B 32948434 32949060 626 True 423.500000 691 89.396500 398 1494 2 chr3B.!!$R4 1096
5 TraesCS3D01G051600 chr3B 33043052 33046862 3810 True 306.033333 580 87.397333 1307 2465 3 chr3B.!!$R5 1158
6 TraesCS3D01G051600 chr3B 32801142 32801696 554 True 217.000000 217 74.959000 1072 1656 1 chr3B.!!$R1 584
7 TraesCS3D01G051600 chrUn 314375167 314376053 886 True 1133.000000 1133 90.290000 990 1850 1 chrUn.!!$R2 860
8 TraesCS3D01G051600 chr3A 28215535 28217290 1755 True 570.666667 985 85.466333 273 2465 3 chr3A.!!$R4 2192
9 TraesCS3D01G051600 chr3A 27876203 27877048 845 True 288.500000 333 82.153500 1070 1861 2 chr3A.!!$R3 791
10 TraesCS3D01G051600 chr3A 27909057 27909618 561 True 213.000000 213 74.836000 1070 1656 1 chr3A.!!$R1 586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
255 256 0.032813 CTGCCCCTGGATGGATTGTT 60.033 55.0 0.0 0.0 38.35 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1858 4718 0.804933 GTAACCGGGCGACTGCTAAG 60.805 60.0 6.32 0.0 42.25 2.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.201927 CCTTATTGGGCTTGGGTGC 58.798 57.895 0.00 0.00 0.00 5.01
27 28 3.264574 GCTTGGGTGCCTTGTATCA 57.735 52.632 0.00 0.00 0.00 2.15
28 29 1.544724 GCTTGGGTGCCTTGTATCAA 58.455 50.000 0.00 0.00 0.00 2.57
29 30 1.892474 GCTTGGGTGCCTTGTATCAAA 59.108 47.619 0.00 0.00 0.00 2.69
30 31 2.298729 GCTTGGGTGCCTTGTATCAAAA 59.701 45.455 0.00 0.00 0.00 2.44
31 32 3.860754 GCTTGGGTGCCTTGTATCAAAAC 60.861 47.826 0.00 0.00 0.00 2.43
32 33 3.237268 TGGGTGCCTTGTATCAAAACT 57.763 42.857 0.00 0.00 0.00 2.66
33 34 3.153919 TGGGTGCCTTGTATCAAAACTC 58.846 45.455 0.00 0.00 0.00 3.01
34 35 2.492088 GGGTGCCTTGTATCAAAACTCC 59.508 50.000 0.00 0.00 0.00 3.85
35 36 3.421844 GGTGCCTTGTATCAAAACTCCT 58.578 45.455 0.00 0.00 0.00 3.69
36 37 3.826729 GGTGCCTTGTATCAAAACTCCTT 59.173 43.478 0.00 0.00 0.00 3.36
37 38 4.280929 GGTGCCTTGTATCAAAACTCCTTT 59.719 41.667 0.00 0.00 0.00 3.11
38 39 5.461526 GTGCCTTGTATCAAAACTCCTTTC 58.538 41.667 0.00 0.00 0.00 2.62
39 40 4.215399 TGCCTTGTATCAAAACTCCTTTCG 59.785 41.667 0.00 0.00 0.00 3.46
40 41 4.215613 GCCTTGTATCAAAACTCCTTTCGT 59.784 41.667 0.00 0.00 0.00 3.85
41 42 5.410439 GCCTTGTATCAAAACTCCTTTCGTA 59.590 40.000 0.00 0.00 0.00 3.43
42 43 6.093633 GCCTTGTATCAAAACTCCTTTCGTAT 59.906 38.462 0.00 0.00 0.00 3.06
43 44 7.464358 CCTTGTATCAAAACTCCTTTCGTATG 58.536 38.462 0.00 0.00 0.00 2.39
44 45 7.119262 CCTTGTATCAAAACTCCTTTCGTATGT 59.881 37.037 0.00 0.00 0.00 2.29
45 46 7.591006 TGTATCAAAACTCCTTTCGTATGTC 57.409 36.000 0.00 0.00 0.00 3.06
46 47 7.383687 TGTATCAAAACTCCTTTCGTATGTCT 58.616 34.615 0.00 0.00 0.00 3.41
47 48 6.727824 ATCAAAACTCCTTTCGTATGTCTG 57.272 37.500 0.00 0.00 0.00 3.51
48 49 5.607477 TCAAAACTCCTTTCGTATGTCTGT 58.393 37.500 0.00 0.00 0.00 3.41
49 50 6.053005 TCAAAACTCCTTTCGTATGTCTGTT 58.947 36.000 0.00 0.00 0.00 3.16
50 51 6.540914 TCAAAACTCCTTTCGTATGTCTGTTT 59.459 34.615 0.00 0.00 0.00 2.83
51 52 6.541111 AAACTCCTTTCGTATGTCTGTTTC 57.459 37.500 0.00 0.00 0.00 2.78
52 53 4.235360 ACTCCTTTCGTATGTCTGTTTCG 58.765 43.478 0.00 0.00 0.00 3.46
53 54 4.235360 CTCCTTTCGTATGTCTGTTTCGT 58.765 43.478 0.00 0.00 0.00 3.85
54 55 3.985279 TCCTTTCGTATGTCTGTTTCGTG 59.015 43.478 0.00 0.00 0.00 4.35
55 56 3.739300 CCTTTCGTATGTCTGTTTCGTGT 59.261 43.478 0.00 0.00 0.00 4.49
56 57 4.210537 CCTTTCGTATGTCTGTTTCGTGTT 59.789 41.667 0.00 0.00 0.00 3.32
57 58 4.702247 TTCGTATGTCTGTTTCGTGTTG 57.298 40.909 0.00 0.00 0.00 3.33
58 59 3.708890 TCGTATGTCTGTTTCGTGTTGT 58.291 40.909 0.00 0.00 0.00 3.32
59 60 4.857799 TCGTATGTCTGTTTCGTGTTGTA 58.142 39.130 0.00 0.00 0.00 2.41
60 61 5.463286 TCGTATGTCTGTTTCGTGTTGTAT 58.537 37.500 0.00 0.00 0.00 2.29
61 62 5.343860 TCGTATGTCTGTTTCGTGTTGTATG 59.656 40.000 0.00 0.00 0.00 2.39
62 63 3.870723 TGTCTGTTTCGTGTTGTATGC 57.129 42.857 0.00 0.00 0.00 3.14
63 64 3.462982 TGTCTGTTTCGTGTTGTATGCT 58.537 40.909 0.00 0.00 0.00 3.79
64 65 4.623002 TGTCTGTTTCGTGTTGTATGCTA 58.377 39.130 0.00 0.00 0.00 3.49
65 66 4.446385 TGTCTGTTTCGTGTTGTATGCTAC 59.554 41.667 0.00 0.00 0.00 3.58
66 67 4.684703 GTCTGTTTCGTGTTGTATGCTACT 59.315 41.667 0.00 0.00 0.00 2.57
67 68 4.921515 TCTGTTTCGTGTTGTATGCTACTC 59.078 41.667 0.00 0.00 0.00 2.59
68 69 4.878439 TGTTTCGTGTTGTATGCTACTCT 58.122 39.130 0.00 0.00 0.00 3.24
69 70 5.294356 TGTTTCGTGTTGTATGCTACTCTT 58.706 37.500 0.00 0.00 0.00 2.85
70 71 5.756347 TGTTTCGTGTTGTATGCTACTCTTT 59.244 36.000 0.00 0.00 0.00 2.52
71 72 6.073980 TGTTTCGTGTTGTATGCTACTCTTTC 60.074 38.462 0.00 0.00 0.00 2.62
72 73 4.163552 TCGTGTTGTATGCTACTCTTTCG 58.836 43.478 0.00 0.00 0.00 3.46
73 74 3.303495 CGTGTTGTATGCTACTCTTTCGG 59.697 47.826 0.00 0.00 0.00 4.30
74 75 4.243270 GTGTTGTATGCTACTCTTTCGGT 58.757 43.478 0.00 0.00 0.00 4.69
75 76 4.689345 GTGTTGTATGCTACTCTTTCGGTT 59.311 41.667 0.00 0.00 0.00 4.44
76 77 4.688879 TGTTGTATGCTACTCTTTCGGTTG 59.311 41.667 0.00 0.00 0.00 3.77
77 78 3.857052 TGTATGCTACTCTTTCGGTTGG 58.143 45.455 0.00 0.00 0.00 3.77
78 79 3.259876 TGTATGCTACTCTTTCGGTTGGT 59.740 43.478 0.00 0.00 0.00 3.67
79 80 2.922740 TGCTACTCTTTCGGTTGGTT 57.077 45.000 0.00 0.00 0.00 3.67
80 81 2.489971 TGCTACTCTTTCGGTTGGTTG 58.510 47.619 0.00 0.00 0.00 3.77
81 82 2.158871 TGCTACTCTTTCGGTTGGTTGT 60.159 45.455 0.00 0.00 0.00 3.32
82 83 2.223377 GCTACTCTTTCGGTTGGTTGTG 59.777 50.000 0.00 0.00 0.00 3.33
83 84 2.702592 ACTCTTTCGGTTGGTTGTGA 57.297 45.000 0.00 0.00 0.00 3.58
84 85 2.993937 ACTCTTTCGGTTGGTTGTGAA 58.006 42.857 0.00 0.00 0.00 3.18
85 86 3.551846 ACTCTTTCGGTTGGTTGTGAAT 58.448 40.909 0.00 0.00 0.00 2.57
86 87 3.315191 ACTCTTTCGGTTGGTTGTGAATG 59.685 43.478 0.00 0.00 0.00 2.67
87 88 3.283751 TCTTTCGGTTGGTTGTGAATGT 58.716 40.909 0.00 0.00 0.00 2.71
88 89 3.697045 TCTTTCGGTTGGTTGTGAATGTT 59.303 39.130 0.00 0.00 0.00 2.71
89 90 3.428746 TTCGGTTGGTTGTGAATGTTG 57.571 42.857 0.00 0.00 0.00 3.33
90 91 1.066303 TCGGTTGGTTGTGAATGTTGC 59.934 47.619 0.00 0.00 0.00 4.17
91 92 1.864565 GGTTGGTTGTGAATGTTGCC 58.135 50.000 0.00 0.00 0.00 4.52
92 93 1.412343 GGTTGGTTGTGAATGTTGCCT 59.588 47.619 0.00 0.00 0.00 4.75
93 94 2.472816 GTTGGTTGTGAATGTTGCCTG 58.527 47.619 0.00 0.00 0.00 4.85
94 95 2.064434 TGGTTGTGAATGTTGCCTGA 57.936 45.000 0.00 0.00 0.00 3.86
95 96 2.596346 TGGTTGTGAATGTTGCCTGAT 58.404 42.857 0.00 0.00 0.00 2.90
96 97 2.296752 TGGTTGTGAATGTTGCCTGATG 59.703 45.455 0.00 0.00 0.00 3.07
97 98 2.353011 GGTTGTGAATGTTGCCTGATGG 60.353 50.000 0.00 0.00 0.00 3.51
134 135 9.959721 AAAGTCAGACTAATGCCTTTTATCTAA 57.040 29.630 2.64 0.00 0.00 2.10
135 136 9.959721 AAGTCAGACTAATGCCTTTTATCTAAA 57.040 29.630 2.64 0.00 0.00 1.85
136 137 9.959721 AGTCAGACTAATGCCTTTTATCTAAAA 57.040 29.630 0.00 0.00 34.35 1.52
156 157 3.350219 AAAAGTATCGCCATGGTCAGT 57.650 42.857 14.67 0.00 0.00 3.41
157 158 2.604046 AAGTATCGCCATGGTCAGTC 57.396 50.000 14.67 2.05 0.00 3.51
158 159 1.781786 AGTATCGCCATGGTCAGTCT 58.218 50.000 14.67 4.43 0.00 3.24
159 160 2.111384 AGTATCGCCATGGTCAGTCTT 58.889 47.619 14.67 0.00 0.00 3.01
160 161 2.159043 AGTATCGCCATGGTCAGTCTTG 60.159 50.000 14.67 0.00 0.00 3.02
161 162 0.745845 ATCGCCATGGTCAGTCTTGC 60.746 55.000 14.67 0.00 0.00 4.01
162 163 2.401766 CGCCATGGTCAGTCTTGCC 61.402 63.158 14.67 0.00 0.00 4.52
163 164 2.401766 GCCATGGTCAGTCTTGCCG 61.402 63.158 14.67 0.00 0.00 5.69
164 165 1.003355 CCATGGTCAGTCTTGCCGT 60.003 57.895 2.57 0.00 0.00 5.68
165 166 1.021390 CCATGGTCAGTCTTGCCGTC 61.021 60.000 2.57 0.00 0.00 4.79
166 167 1.021390 CATGGTCAGTCTTGCCGTCC 61.021 60.000 0.00 0.00 0.00 4.79
167 168 2.432628 GGTCAGTCTTGCCGTCCG 60.433 66.667 0.00 0.00 0.00 4.79
168 169 3.112709 GTCAGTCTTGCCGTCCGC 61.113 66.667 0.00 0.00 38.31 5.54
184 185 3.056628 CGCAAGGCAGAAGTCCTAG 57.943 57.895 0.00 0.00 32.65 3.02
185 186 0.460987 CGCAAGGCAGAAGTCCTAGG 60.461 60.000 0.82 0.82 32.65 3.02
186 187 0.905357 GCAAGGCAGAAGTCCTAGGA 59.095 55.000 7.62 7.62 32.65 2.94
187 188 1.406205 GCAAGGCAGAAGTCCTAGGAC 60.406 57.143 31.29 31.29 44.86 3.85
188 189 1.902508 CAAGGCAGAAGTCCTAGGACA 59.097 52.381 37.27 5.27 46.76 4.02
189 190 1.859302 AGGCAGAAGTCCTAGGACAG 58.141 55.000 37.27 25.43 46.76 3.51
190 191 1.359474 AGGCAGAAGTCCTAGGACAGA 59.641 52.381 37.27 4.04 46.76 3.41
191 192 2.180276 GGCAGAAGTCCTAGGACAGAA 58.820 52.381 37.27 3.63 46.76 3.02
192 193 2.093921 GGCAGAAGTCCTAGGACAGAAC 60.094 54.545 37.27 25.04 46.76 3.01
193 194 2.093921 GCAGAAGTCCTAGGACAGAACC 60.094 54.545 37.27 22.26 46.76 3.62
194 195 2.498078 CAGAAGTCCTAGGACAGAACCC 59.502 54.545 37.27 20.79 46.76 4.11
195 196 1.832366 GAAGTCCTAGGACAGAACCCC 59.168 57.143 37.27 17.14 46.76 4.95
196 197 0.790993 AGTCCTAGGACAGAACCCCA 59.209 55.000 37.27 0.00 46.76 4.96
197 198 1.151413 AGTCCTAGGACAGAACCCCAA 59.849 52.381 37.27 0.00 46.76 4.12
198 199 1.278413 GTCCTAGGACAGAACCCCAAC 59.722 57.143 32.91 5.10 44.02 3.77
199 200 1.132657 TCCTAGGACAGAACCCCAACA 60.133 52.381 7.62 0.00 0.00 3.33
200 201 1.702957 CCTAGGACAGAACCCCAACAA 59.297 52.381 1.05 0.00 0.00 2.83
201 202 2.290323 CCTAGGACAGAACCCCAACAAG 60.290 54.545 1.05 0.00 0.00 3.16
202 203 1.518367 AGGACAGAACCCCAACAAGA 58.482 50.000 0.00 0.00 0.00 3.02
203 204 1.143073 AGGACAGAACCCCAACAAGAC 59.857 52.381 0.00 0.00 0.00 3.01
204 205 1.133915 GGACAGAACCCCAACAAGACA 60.134 52.381 0.00 0.00 0.00 3.41
205 206 2.650322 GACAGAACCCCAACAAGACAA 58.350 47.619 0.00 0.00 0.00 3.18
206 207 3.020984 GACAGAACCCCAACAAGACAAA 58.979 45.455 0.00 0.00 0.00 2.83
207 208 2.758423 ACAGAACCCCAACAAGACAAAC 59.242 45.455 0.00 0.00 0.00 2.93
208 209 2.100749 CAGAACCCCAACAAGACAAACC 59.899 50.000 0.00 0.00 0.00 3.27
209 210 1.411246 GAACCCCAACAAGACAAACCC 59.589 52.381 0.00 0.00 0.00 4.11
210 211 0.336737 ACCCCAACAAGACAAACCCA 59.663 50.000 0.00 0.00 0.00 4.51
211 212 1.273324 ACCCCAACAAGACAAACCCAA 60.273 47.619 0.00 0.00 0.00 4.12
212 213 1.834263 CCCCAACAAGACAAACCCAAA 59.166 47.619 0.00 0.00 0.00 3.28
213 214 2.419436 CCCCAACAAGACAAACCCAAAC 60.419 50.000 0.00 0.00 0.00 2.93
214 215 2.234908 CCCAACAAGACAAACCCAAACA 59.765 45.455 0.00 0.00 0.00 2.83
215 216 3.520569 CCAACAAGACAAACCCAAACAG 58.479 45.455 0.00 0.00 0.00 3.16
216 217 3.056179 CCAACAAGACAAACCCAAACAGT 60.056 43.478 0.00 0.00 0.00 3.55
217 218 4.158764 CCAACAAGACAAACCCAAACAGTA 59.841 41.667 0.00 0.00 0.00 2.74
218 219 4.976224 ACAAGACAAACCCAAACAGTAC 57.024 40.909 0.00 0.00 0.00 2.73
219 220 4.337145 ACAAGACAAACCCAAACAGTACA 58.663 39.130 0.00 0.00 0.00 2.90
220 221 4.767928 ACAAGACAAACCCAAACAGTACAA 59.232 37.500 0.00 0.00 0.00 2.41
221 222 4.976224 AGACAAACCCAAACAGTACAAC 57.024 40.909 0.00 0.00 0.00 3.32
222 223 3.697542 AGACAAACCCAAACAGTACAACC 59.302 43.478 0.00 0.00 0.00 3.77
223 224 3.432378 ACAAACCCAAACAGTACAACCA 58.568 40.909 0.00 0.00 0.00 3.67
224 225 3.445805 ACAAACCCAAACAGTACAACCAG 59.554 43.478 0.00 0.00 0.00 4.00
225 226 1.687563 ACCCAAACAGTACAACCAGC 58.312 50.000 0.00 0.00 0.00 4.85
226 227 0.591170 CCCAAACAGTACAACCAGCG 59.409 55.000 0.00 0.00 0.00 5.18
227 228 0.040425 CCAAACAGTACAACCAGCGC 60.040 55.000 0.00 0.00 0.00 5.92
228 229 0.660488 CAAACAGTACAACCAGCGCA 59.340 50.000 11.47 0.00 0.00 6.09
229 230 1.266718 CAAACAGTACAACCAGCGCAT 59.733 47.619 11.47 0.00 0.00 4.73
230 231 1.156736 AACAGTACAACCAGCGCATC 58.843 50.000 11.47 0.00 0.00 3.91
231 232 0.321671 ACAGTACAACCAGCGCATCT 59.678 50.000 11.47 0.00 0.00 2.90
232 233 1.270839 ACAGTACAACCAGCGCATCTT 60.271 47.619 11.47 0.00 0.00 2.40
233 234 1.806542 CAGTACAACCAGCGCATCTTT 59.193 47.619 11.47 0.00 0.00 2.52
234 235 1.806542 AGTACAACCAGCGCATCTTTG 59.193 47.619 11.47 9.81 0.00 2.77
235 236 0.521291 TACAACCAGCGCATCTTTGC 59.479 50.000 11.47 0.00 45.78 3.68
236 237 1.444895 CAACCAGCGCATCTTTGCC 60.445 57.895 11.47 0.00 46.57 4.52
237 238 1.604593 AACCAGCGCATCTTTGCCT 60.605 52.632 11.47 0.00 46.57 4.75
238 239 1.870055 AACCAGCGCATCTTTGCCTG 61.870 55.000 11.47 0.00 46.57 4.85
239 240 2.202570 CAGCGCATCTTTGCCTGC 60.203 61.111 11.47 0.00 46.57 4.85
240 241 3.446570 AGCGCATCTTTGCCTGCC 61.447 61.111 11.47 0.00 46.57 4.85
241 242 4.503314 GCGCATCTTTGCCTGCCC 62.503 66.667 0.30 0.00 46.57 5.36
242 243 3.830192 CGCATCTTTGCCTGCCCC 61.830 66.667 0.00 0.00 46.57 5.80
243 244 2.363406 GCATCTTTGCCTGCCCCT 60.363 61.111 0.00 0.00 43.38 4.79
244 245 2.718073 GCATCTTTGCCTGCCCCTG 61.718 63.158 0.00 0.00 43.38 4.45
245 246 2.056223 CATCTTTGCCTGCCCCTGG 61.056 63.158 0.00 0.00 0.00 4.45
246 247 2.240918 ATCTTTGCCTGCCCCTGGA 61.241 57.895 0.00 0.00 0.00 3.86
247 248 1.587522 ATCTTTGCCTGCCCCTGGAT 61.588 55.000 0.00 0.00 0.00 3.41
248 249 2.037687 TTTGCCTGCCCCTGGATG 59.962 61.111 0.00 0.00 0.00 3.51
249 250 3.605412 TTTGCCTGCCCCTGGATGG 62.605 63.158 0.00 0.00 0.00 3.51
251 252 3.505773 GCCTGCCCCTGGATGGAT 61.506 66.667 0.00 0.00 38.35 3.41
252 253 3.078843 GCCTGCCCCTGGATGGATT 62.079 63.158 0.00 0.00 38.35 3.01
253 254 1.152610 CCTGCCCCTGGATGGATTG 60.153 63.158 0.00 0.00 38.35 2.67
254 255 1.616921 CTGCCCCTGGATGGATTGT 59.383 57.895 0.00 0.00 38.35 2.71
255 256 0.032813 CTGCCCCTGGATGGATTGTT 60.033 55.000 0.00 0.00 38.35 2.83
256 257 0.324552 TGCCCCTGGATGGATTGTTG 60.325 55.000 0.00 0.00 38.35 3.33
257 258 0.033208 GCCCCTGGATGGATTGTTGA 60.033 55.000 0.00 0.00 38.35 3.18
258 259 1.412074 GCCCCTGGATGGATTGTTGAT 60.412 52.381 0.00 0.00 38.35 2.57
259 260 2.313317 CCCCTGGATGGATTGTTGATG 58.687 52.381 0.00 0.00 38.35 3.07
260 261 1.684983 CCCTGGATGGATTGTTGATGC 59.315 52.381 0.00 0.00 38.35 3.91
261 262 2.662866 CCTGGATGGATTGTTGATGCT 58.337 47.619 0.00 0.00 38.35 3.79
262 263 2.361119 CCTGGATGGATTGTTGATGCTG 59.639 50.000 0.00 0.00 38.35 4.41
263 264 1.752498 TGGATGGATTGTTGATGCTGC 59.248 47.619 0.00 0.00 0.00 5.25
264 265 2.029623 GGATGGATTGTTGATGCTGCT 58.970 47.619 0.00 0.00 0.00 4.24
265 266 2.223735 GGATGGATTGTTGATGCTGCTG 60.224 50.000 0.00 0.00 0.00 4.41
266 267 0.528924 TGGATTGTTGATGCTGCTGC 59.471 50.000 8.89 8.89 40.20 5.25
267 268 0.179119 GGATTGTTGATGCTGCTGCC 60.179 55.000 13.47 0.00 38.71 4.85
268 269 0.524816 GATTGTTGATGCTGCTGCCG 60.525 55.000 13.47 0.00 38.71 5.69
269 270 2.552585 ATTGTTGATGCTGCTGCCGC 62.553 55.000 13.47 9.23 38.71 6.53
270 271 4.824166 GTTGATGCTGCTGCCGCG 62.824 66.667 13.47 0.00 39.65 6.46
289 290 4.498520 CCGCCATGAGTCGTCGCT 62.499 66.667 0.00 0.00 0.00 4.93
293 294 1.297967 CCATGAGTCGTCGCTCTCG 60.298 63.158 14.74 7.92 36.51 4.04
303 304 4.056125 CGCTCTCGCAGACCACCA 62.056 66.667 0.00 0.00 35.30 4.17
306 307 2.523168 TCTCGCAGACCACCACCA 60.523 61.111 0.00 0.00 0.00 4.17
313 314 0.474184 CAGACCACCACCATATCCCC 59.526 60.000 0.00 0.00 0.00 4.81
353 354 1.274703 GGTGCCTTCCCTCTGATCCA 61.275 60.000 0.00 0.00 0.00 3.41
355 356 1.135094 TGCCTTCCCTCTGATCCATC 58.865 55.000 0.00 0.00 0.00 3.51
359 360 3.435275 CCTTCCCTCTGATCCATCGATA 58.565 50.000 0.00 0.00 0.00 2.92
360 361 3.194542 CCTTCCCTCTGATCCATCGATAC 59.805 52.174 0.00 0.00 0.00 2.24
384 385 1.480545 AGTTGGTTTGACTTGGGTTGC 59.519 47.619 0.00 0.00 0.00 4.17
445 463 2.427245 CGCTTGGGGGAGATCGACT 61.427 63.158 0.00 0.00 0.00 4.18
461 479 1.526887 CGACTTGTGAAGTGCGAACAT 59.473 47.619 0.00 0.00 43.03 2.71
463 481 1.603802 ACTTGTGAAGTGCGAACATGG 59.396 47.619 0.00 0.00 41.01 3.66
477 495 3.744426 CGAACATGGTTACTCGGTTTTCT 59.256 43.478 0.00 0.00 0.00 2.52
481 499 5.243207 ACATGGTTACTCGGTTTTCTAAGG 58.757 41.667 0.00 0.00 0.00 2.69
485 503 4.153655 GGTTACTCGGTTTTCTAAGGCTTG 59.846 45.833 10.69 0.00 0.00 4.01
491 509 3.065371 CGGTTTTCTAAGGCTTGGCATAG 59.935 47.826 10.69 0.00 0.00 2.23
496 514 2.100916 TCTAAGGCTTGGCATAGACGTC 59.899 50.000 10.69 7.70 0.00 4.34
498 516 1.883084 GGCTTGGCATAGACGTCGG 60.883 63.158 10.46 5.23 0.00 4.79
518 536 1.606601 TCCCACCACACGAGAGGAG 60.607 63.158 2.94 0.00 0.00 3.69
523 546 2.358267 CCACCACACGAGAGGAGTATAC 59.642 54.545 2.94 0.00 0.00 1.47
534 557 6.373774 ACGAGAGGAGTATACATATAAACCCG 59.626 42.308 5.50 0.66 0.00 5.28
539 562 5.186409 GGAGTATACATATAAACCCGCTCCA 59.814 44.000 5.50 0.00 38.76 3.86
540 563 6.034161 AGTATACATATAAACCCGCTCCAC 57.966 41.667 5.50 0.00 0.00 4.02
541 564 5.778750 AGTATACATATAAACCCGCTCCACT 59.221 40.000 5.50 0.00 0.00 4.00
542 565 3.194005 ACATATAAACCCGCTCCACTG 57.806 47.619 0.00 0.00 0.00 3.66
543 566 1.873591 CATATAAACCCGCTCCACTGC 59.126 52.381 0.00 0.00 0.00 4.40
545 568 1.847798 ATAAACCCGCTCCACTGCCA 61.848 55.000 0.00 0.00 0.00 4.92
546 569 1.847798 TAAACCCGCTCCACTGCCAT 61.848 55.000 0.00 0.00 0.00 4.40
548 571 2.361610 CCCGCTCCACTGCCATTT 60.362 61.111 0.00 0.00 0.00 2.32
549 572 2.409870 CCCGCTCCACTGCCATTTC 61.410 63.158 0.00 0.00 0.00 2.17
550 573 2.753966 CCGCTCCACTGCCATTTCG 61.754 63.158 0.00 0.00 0.00 3.46
551 574 2.753966 CGCTCCACTGCCATTTCGG 61.754 63.158 0.00 0.00 38.11 4.30
552 575 1.377202 GCTCCACTGCCATTTCGGA 60.377 57.895 0.00 0.00 36.56 4.55
553 576 1.372087 GCTCCACTGCCATTTCGGAG 61.372 60.000 0.00 0.00 45.05 4.63
554 577 0.745845 CTCCACTGCCATTTCGGAGG 60.746 60.000 0.00 0.00 39.71 4.30
555 578 1.750399 CCACTGCCATTTCGGAGGG 60.750 63.158 0.00 0.00 36.56 4.30
556 579 1.299648 CACTGCCATTTCGGAGGGA 59.700 57.895 0.00 0.00 36.56 4.20
557 580 0.107017 CACTGCCATTTCGGAGGGAT 60.107 55.000 0.00 0.00 36.56 3.85
558 581 1.140852 CACTGCCATTTCGGAGGGATA 59.859 52.381 0.00 0.00 36.56 2.59
559 582 1.843851 ACTGCCATTTCGGAGGGATAA 59.156 47.619 0.00 0.00 36.56 1.75
560 583 2.443255 ACTGCCATTTCGGAGGGATAAT 59.557 45.455 0.00 0.00 36.56 1.28
561 584 3.650942 ACTGCCATTTCGGAGGGATAATA 59.349 43.478 0.00 0.00 36.56 0.98
562 585 4.003648 CTGCCATTTCGGAGGGATAATAC 58.996 47.826 0.00 0.00 36.56 1.89
563 586 3.650942 TGCCATTTCGGAGGGATAATACT 59.349 43.478 0.00 0.00 36.56 2.12
564 587 4.841813 TGCCATTTCGGAGGGATAATACTA 59.158 41.667 0.00 0.00 36.56 1.82
565 588 5.046591 TGCCATTTCGGAGGGATAATACTAG 60.047 44.000 0.00 0.00 36.56 2.57
566 589 5.187186 GCCATTTCGGAGGGATAATACTAGA 59.813 44.000 0.00 0.00 36.56 2.43
567 590 6.631962 CCATTTCGGAGGGATAATACTAGAC 58.368 44.000 0.00 0.00 36.56 2.59
568 591 6.437793 CCATTTCGGAGGGATAATACTAGACT 59.562 42.308 0.00 0.00 36.56 3.24
569 592 7.363094 CCATTTCGGAGGGATAATACTAGACTC 60.363 44.444 0.00 0.00 36.56 3.36
570 593 5.837770 TCGGAGGGATAATACTAGACTCA 57.162 43.478 0.00 0.00 0.00 3.41
571 594 5.558818 TCGGAGGGATAATACTAGACTCAC 58.441 45.833 0.00 0.00 0.00 3.51
572 595 4.392445 CGGAGGGATAATACTAGACTCACG 59.608 50.000 0.00 0.00 0.00 4.35
573 596 4.701171 GGAGGGATAATACTAGACTCACGG 59.299 50.000 0.00 0.00 0.00 4.94
574 597 4.664392 AGGGATAATACTAGACTCACGGG 58.336 47.826 0.00 0.00 0.00 5.28
575 598 3.193056 GGGATAATACTAGACTCACGGGC 59.807 52.174 0.00 0.00 0.00 6.13
576 599 4.080687 GGATAATACTAGACTCACGGGCT 58.919 47.826 0.00 0.00 37.00 5.19
577 600 4.156373 GGATAATACTAGACTCACGGGCTC 59.844 50.000 0.00 0.00 33.70 4.70
578 601 1.984066 ATACTAGACTCACGGGCTCC 58.016 55.000 0.00 0.00 33.70 4.70
579 602 0.917533 TACTAGACTCACGGGCTCCT 59.082 55.000 0.00 0.00 33.70 3.69
580 603 0.039911 ACTAGACTCACGGGCTCCTT 59.960 55.000 0.00 0.00 33.70 3.36
581 604 0.741915 CTAGACTCACGGGCTCCTTC 59.258 60.000 0.00 0.00 33.70 3.46
582 605 0.039180 TAGACTCACGGGCTCCTTCA 59.961 55.000 0.00 0.00 33.70 3.02
583 606 0.832135 AGACTCACGGGCTCCTTCAA 60.832 55.000 0.00 0.00 0.00 2.69
584 607 0.670854 GACTCACGGGCTCCTTCAAC 60.671 60.000 0.00 0.00 0.00 3.18
585 608 1.371183 CTCACGGGCTCCTTCAACA 59.629 57.895 0.00 0.00 0.00 3.33
586 609 0.671781 CTCACGGGCTCCTTCAACAG 60.672 60.000 0.00 0.00 0.00 3.16
587 610 1.118965 TCACGGGCTCCTTCAACAGA 61.119 55.000 0.00 0.00 0.00 3.41
588 611 0.951040 CACGGGCTCCTTCAACAGAC 60.951 60.000 0.00 0.00 0.00 3.51
589 612 1.376037 CGGGCTCCTTCAACAGACC 60.376 63.158 0.00 0.00 33.89 3.85
590 613 1.831652 CGGGCTCCTTCAACAGACCT 61.832 60.000 0.00 0.00 35.32 3.85
591 614 0.402121 GGGCTCCTTCAACAGACCTT 59.598 55.000 0.00 0.00 34.51 3.50
592 615 1.611936 GGGCTCCTTCAACAGACCTTC 60.612 57.143 0.00 0.00 34.51 3.46
593 616 1.072331 GGCTCCTTCAACAGACCTTCA 59.928 52.381 0.00 0.00 0.00 3.02
594 617 2.147150 GCTCCTTCAACAGACCTTCAC 58.853 52.381 0.00 0.00 0.00 3.18
595 618 2.408050 CTCCTTCAACAGACCTTCACG 58.592 52.381 0.00 0.00 0.00 4.35
596 619 1.070134 TCCTTCAACAGACCTTCACGG 59.930 52.381 0.00 0.00 39.35 4.94
597 620 1.070134 CCTTCAACAGACCTTCACGGA 59.930 52.381 0.00 0.00 36.31 4.69
598 621 2.408050 CTTCAACAGACCTTCACGGAG 58.592 52.381 0.00 0.00 36.31 4.63
945 968 6.763715 ATCCTGGCCACTAATACTTAATCA 57.236 37.500 0.00 0.00 0.00 2.57
946 969 6.569127 TCCTGGCCACTAATACTTAATCAA 57.431 37.500 0.00 0.00 0.00 2.57
947 970 6.354130 TCCTGGCCACTAATACTTAATCAAC 58.646 40.000 0.00 0.00 0.00 3.18
948 971 5.531287 CCTGGCCACTAATACTTAATCAACC 59.469 44.000 0.00 0.00 0.00 3.77
949 972 5.442391 TGGCCACTAATACTTAATCAACCC 58.558 41.667 0.00 0.00 0.00 4.11
950 973 4.825634 GGCCACTAATACTTAATCAACCCC 59.174 45.833 0.00 0.00 0.00 4.95
951 974 4.514066 GCCACTAATACTTAATCAACCCCG 59.486 45.833 0.00 0.00 0.00 5.73
952 975 5.677567 CCACTAATACTTAATCAACCCCGT 58.322 41.667 0.00 0.00 0.00 5.28
953 976 6.686126 GCCACTAATACTTAATCAACCCCGTA 60.686 42.308 0.00 0.00 0.00 4.02
954 977 7.274447 CCACTAATACTTAATCAACCCCGTAA 58.726 38.462 0.00 0.00 0.00 3.18
955 978 7.769970 CCACTAATACTTAATCAACCCCGTAAA 59.230 37.037 0.00 0.00 0.00 2.01
956 979 8.606602 CACTAATACTTAATCAACCCCGTAAAC 58.393 37.037 0.00 0.00 0.00 2.01
957 980 8.542926 ACTAATACTTAATCAACCCCGTAAACT 58.457 33.333 0.00 0.00 0.00 2.66
958 981 7.854557 AATACTTAATCAACCCCGTAAACTC 57.145 36.000 0.00 0.00 0.00 3.01
959 982 4.582869 ACTTAATCAACCCCGTAAACTCC 58.417 43.478 0.00 0.00 0.00 3.85
960 983 2.502142 AATCAACCCCGTAAACTCCC 57.498 50.000 0.00 0.00 0.00 4.30
961 984 0.251073 ATCAACCCCGTAAACTCCCG 59.749 55.000 0.00 0.00 0.00 5.14
962 985 1.120795 TCAACCCCGTAAACTCCCGT 61.121 55.000 0.00 0.00 0.00 5.28
963 986 0.952010 CAACCCCGTAAACTCCCGTG 60.952 60.000 0.00 0.00 0.00 4.94
964 987 1.120795 AACCCCGTAAACTCCCGTGA 61.121 55.000 0.00 0.00 0.00 4.35
965 988 1.120795 ACCCCGTAAACTCCCGTGAA 61.121 55.000 0.00 0.00 0.00 3.18
966 989 0.671472 CCCCGTAAACTCCCGTGAAC 60.671 60.000 0.00 0.00 0.00 3.18
967 990 0.671472 CCCGTAAACTCCCGTGAACC 60.671 60.000 0.00 0.00 0.00 3.62
968 991 0.671472 CCGTAAACTCCCGTGAACCC 60.671 60.000 0.00 0.00 0.00 4.11
969 992 0.671472 CGTAAACTCCCGTGAACCCC 60.671 60.000 0.00 0.00 0.00 4.95
970 993 0.321919 GTAAACTCCCGTGAACCCCC 60.322 60.000 0.00 0.00 0.00 5.40
984 1007 3.309582 CCCCCGTGAGTGTAGCAT 58.690 61.111 0.00 0.00 0.00 3.79
985 1008 1.602237 CCCCCGTGAGTGTAGCATT 59.398 57.895 0.00 0.00 0.00 3.56
986 1009 0.744414 CCCCCGTGAGTGTAGCATTG 60.744 60.000 0.00 0.00 0.00 2.82
987 1010 1.369091 CCCCGTGAGTGTAGCATTGC 61.369 60.000 0.00 0.00 0.00 3.56
988 1011 1.369091 CCCGTGAGTGTAGCATTGCC 61.369 60.000 4.70 0.00 0.00 4.52
1002 1025 0.748450 ATTGCCCATTTCGGAGCATG 59.252 50.000 0.00 0.00 39.69 4.06
1085 1108 1.998315 CCTGAGAATGTGCTTCGAGTG 59.002 52.381 0.00 0.00 38.98 3.51
1101 1124 2.193536 GTGCGGCTCCTGTTTTGGT 61.194 57.895 0.00 0.00 0.00 3.67
1157 1180 3.334751 CCGCAACAACGAGCACGA 61.335 61.111 11.40 0.00 42.66 4.35
1476 4227 3.201290 CAGGTACTAGCAAGGCAGATTG 58.799 50.000 0.00 0.00 36.02 2.67
1499 4250 6.228258 TGGCTAGTTTGGTAGTTTGTCTAAG 58.772 40.000 0.00 0.00 0.00 2.18
1502 4253 7.443272 GGCTAGTTTGGTAGTTTGTCTAAGAAA 59.557 37.037 0.00 0.00 0.00 2.52
1614 4383 5.415701 TCCCTTTCTCTTTGGATTTTGATCG 59.584 40.000 0.00 0.00 0.00 3.69
1710 4539 1.838112 ATTTGTCCATGGATGTGCGT 58.162 45.000 19.62 0.00 0.00 5.24
1780 4635 8.159447 TGGCTGCTTTCTTCTTGTATCATATAT 58.841 33.333 0.00 0.00 0.00 0.86
1781 4636 9.658799 GGCTGCTTTCTTCTTGTATCATATATA 57.341 33.333 0.00 0.00 0.00 0.86
1858 4718 3.730761 CCAGGCTTCGCTGTGTGC 61.731 66.667 0.00 0.00 38.57 4.57
1868 4728 1.784062 GCTGTGTGCTTAGCAGTCG 59.216 57.895 7.34 0.00 40.08 4.18
1911 4771 3.491342 TGGTGCTGTTGCCAGTAAATTA 58.509 40.909 0.00 0.00 41.02 1.40
1922 4782 6.824958 TGCCAGTAAATTAATACTCCCTCT 57.175 37.500 0.00 0.00 33.90 3.69
1926 4786 7.939588 GCCAGTAAATTAATACTCCCTCTGATT 59.060 37.037 0.00 0.00 33.90 2.57
1940 4800 9.347240 ACTCCCTCTGATTCATATTAATTGTTG 57.653 33.333 0.00 0.00 0.00 3.33
1941 4801 8.169977 TCCCTCTGATTCATATTAATTGTTGC 57.830 34.615 0.00 0.00 0.00 4.17
1942 4802 8.000709 TCCCTCTGATTCATATTAATTGTTGCT 58.999 33.333 0.00 0.00 0.00 3.91
1943 4803 8.080417 CCCTCTGATTCATATTAATTGTTGCTG 58.920 37.037 0.00 0.00 0.00 4.41
1944 4804 8.843262 CCTCTGATTCATATTAATTGTTGCTGA 58.157 33.333 0.00 0.00 0.00 4.26
2014 4874 5.531287 GGAGTACCTGAATCAAACTTGTGTT 59.469 40.000 0.00 0.00 38.16 3.32
2015 4875 6.039382 GGAGTACCTGAATCAAACTTGTGTTT 59.961 38.462 0.00 0.00 46.20 2.83
2053 4913 4.200092 GGGTAATGGGTTGTTCTCATCTC 58.800 47.826 0.00 0.00 36.02 2.75
2054 4914 4.324254 GGGTAATGGGTTGTTCTCATCTCA 60.324 45.833 0.00 0.00 36.02 3.27
2055 4915 4.636206 GGTAATGGGTTGTTCTCATCTCAC 59.364 45.833 0.00 0.00 36.02 3.51
2056 4916 4.371624 AATGGGTTGTTCTCATCTCACA 57.628 40.909 0.00 0.00 36.02 3.58
2057 4917 3.407424 TGGGTTGTTCTCATCTCACAG 57.593 47.619 0.00 0.00 0.00 3.66
2058 4918 2.038952 TGGGTTGTTCTCATCTCACAGG 59.961 50.000 0.00 0.00 0.00 4.00
2082 4942 1.738350 CAGCCATTCTGAAGCACTGAG 59.262 52.381 9.48 0.00 45.72 3.35
2103 4963 4.798882 AGACCACAATGTTTTACAAGGGA 58.201 39.130 0.00 0.00 0.00 4.20
2109 4969 6.438763 CACAATGTTTTACAAGGGAAGAGAC 58.561 40.000 0.00 0.00 0.00 3.36
2110 4970 6.039270 CACAATGTTTTACAAGGGAAGAGACA 59.961 38.462 0.00 0.00 0.00 3.41
2111 4971 6.777580 ACAATGTTTTACAAGGGAAGAGACAT 59.222 34.615 0.00 0.00 0.00 3.06
2112 4972 7.040409 ACAATGTTTTACAAGGGAAGAGACATC 60.040 37.037 0.00 0.00 0.00 3.06
2113 4973 6.187727 TGTTTTACAAGGGAAGAGACATCT 57.812 37.500 0.00 0.00 37.39 2.90
2115 4975 7.060421 TGTTTTACAAGGGAAGAGACATCTTT 58.940 34.615 0.00 0.00 45.98 2.52
2116 4976 7.559897 TGTTTTACAAGGGAAGAGACATCTTTT 59.440 33.333 0.00 0.00 45.98 2.27
2117 4977 8.414003 GTTTTACAAGGGAAGAGACATCTTTTT 58.586 33.333 0.00 0.00 45.98 1.94
2171 5033 5.865085 ACTGCTTGGAATACTGAGTTTGTA 58.135 37.500 0.00 0.00 0.00 2.41
2222 5084 4.648762 TCAAAGAAACCAGAATTTCCTGCA 59.351 37.500 0.00 0.00 39.05 4.41
2228 5090 2.893489 ACCAGAATTTCCTGCAAAGTCC 59.107 45.455 0.00 0.00 39.48 3.85
2307 5169 3.943381 ACATATGCTTCTGACACCACATG 59.057 43.478 1.58 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.544724 TTGATACAAGGCACCCAAGC 58.455 50.000 0.00 0.00 0.00 4.01
10 11 3.573967 AGTTTTGATACAAGGCACCCAAG 59.426 43.478 0.00 0.00 0.00 3.61
11 12 3.571590 AGTTTTGATACAAGGCACCCAA 58.428 40.909 0.00 0.00 0.00 4.12
12 13 3.153919 GAGTTTTGATACAAGGCACCCA 58.846 45.455 0.00 0.00 0.00 4.51
13 14 2.492088 GGAGTTTTGATACAAGGCACCC 59.508 50.000 0.00 0.00 0.00 4.61
14 15 3.421844 AGGAGTTTTGATACAAGGCACC 58.578 45.455 0.00 0.00 0.00 5.01
15 16 5.453567 AAAGGAGTTTTGATACAAGGCAC 57.546 39.130 0.00 0.00 0.00 5.01
16 17 4.215399 CGAAAGGAGTTTTGATACAAGGCA 59.785 41.667 0.00 0.00 0.00 4.75
17 18 4.215613 ACGAAAGGAGTTTTGATACAAGGC 59.784 41.667 0.00 0.00 32.06 4.35
18 19 5.941948 ACGAAAGGAGTTTTGATACAAGG 57.058 39.130 0.00 0.00 32.06 3.61
19 20 8.029642 ACATACGAAAGGAGTTTTGATACAAG 57.970 34.615 0.00 0.00 32.06 3.16
20 21 7.876068 AGACATACGAAAGGAGTTTTGATACAA 59.124 33.333 0.00 0.00 32.06 2.41
21 22 7.330946 CAGACATACGAAAGGAGTTTTGATACA 59.669 37.037 0.00 0.00 32.06 2.29
22 23 7.331193 ACAGACATACGAAAGGAGTTTTGATAC 59.669 37.037 0.00 0.00 32.06 2.24
23 24 7.383687 ACAGACATACGAAAGGAGTTTTGATA 58.616 34.615 0.00 0.00 32.06 2.15
24 25 6.231211 ACAGACATACGAAAGGAGTTTTGAT 58.769 36.000 0.00 0.00 32.06 2.57
25 26 5.607477 ACAGACATACGAAAGGAGTTTTGA 58.393 37.500 0.00 0.00 32.06 2.69
26 27 5.924475 ACAGACATACGAAAGGAGTTTTG 57.076 39.130 0.00 0.00 33.68 2.44
27 28 6.292703 CGAAACAGACATACGAAAGGAGTTTT 60.293 38.462 0.00 0.00 0.00 2.43
28 29 5.176958 CGAAACAGACATACGAAAGGAGTTT 59.823 40.000 0.00 0.00 0.00 2.66
29 30 4.684703 CGAAACAGACATACGAAAGGAGTT 59.315 41.667 0.00 0.00 0.00 3.01
30 31 4.235360 CGAAACAGACATACGAAAGGAGT 58.765 43.478 0.00 0.00 0.00 3.85
31 32 4.090066 CACGAAACAGACATACGAAAGGAG 59.910 45.833 0.00 0.00 0.00 3.69
32 33 3.985279 CACGAAACAGACATACGAAAGGA 59.015 43.478 0.00 0.00 0.00 3.36
33 34 3.739300 ACACGAAACAGACATACGAAAGG 59.261 43.478 0.00 0.00 0.00 3.11
34 35 4.966850 ACACGAAACAGACATACGAAAG 57.033 40.909 0.00 0.00 0.00 2.62
35 36 4.567558 ACAACACGAAACAGACATACGAAA 59.432 37.500 0.00 0.00 0.00 3.46
36 37 4.114073 ACAACACGAAACAGACATACGAA 58.886 39.130 0.00 0.00 0.00 3.85
37 38 3.708890 ACAACACGAAACAGACATACGA 58.291 40.909 0.00 0.00 0.00 3.43
38 39 5.538308 CATACAACACGAAACAGACATACG 58.462 41.667 0.00 0.00 0.00 3.06
39 40 5.120208 AGCATACAACACGAAACAGACATAC 59.880 40.000 0.00 0.00 0.00 2.39
40 41 5.234752 AGCATACAACACGAAACAGACATA 58.765 37.500 0.00 0.00 0.00 2.29
41 42 4.065088 AGCATACAACACGAAACAGACAT 58.935 39.130 0.00 0.00 0.00 3.06
42 43 3.462982 AGCATACAACACGAAACAGACA 58.537 40.909 0.00 0.00 0.00 3.41
43 44 4.684703 AGTAGCATACAACACGAAACAGAC 59.315 41.667 0.00 0.00 46.26 3.51
44 45 4.878439 AGTAGCATACAACACGAAACAGA 58.122 39.130 0.00 0.00 46.26 3.41
45 46 4.923871 AGAGTAGCATACAACACGAAACAG 59.076 41.667 0.00 0.00 46.26 3.16
46 47 4.878439 AGAGTAGCATACAACACGAAACA 58.122 39.130 0.00 0.00 46.26 2.83
47 48 5.840940 AAGAGTAGCATACAACACGAAAC 57.159 39.130 0.00 0.00 46.26 2.78
48 49 5.118050 CGAAAGAGTAGCATACAACACGAAA 59.882 40.000 0.00 0.00 46.26 3.46
49 50 4.619760 CGAAAGAGTAGCATACAACACGAA 59.380 41.667 0.00 0.00 46.26 3.85
50 51 4.163552 CGAAAGAGTAGCATACAACACGA 58.836 43.478 0.00 0.00 46.26 4.35
51 52 3.303495 CCGAAAGAGTAGCATACAACACG 59.697 47.826 0.00 0.00 46.26 4.49
52 53 4.243270 ACCGAAAGAGTAGCATACAACAC 58.757 43.478 0.00 0.00 46.26 3.32
53 54 4.530710 ACCGAAAGAGTAGCATACAACA 57.469 40.909 0.00 0.00 46.26 3.33
54 55 4.092968 CCAACCGAAAGAGTAGCATACAAC 59.907 45.833 0.00 0.00 46.26 3.32
55 56 4.250464 CCAACCGAAAGAGTAGCATACAA 58.750 43.478 0.00 0.00 46.26 2.41
56 57 3.259876 ACCAACCGAAAGAGTAGCATACA 59.740 43.478 0.00 0.00 46.26 2.29
57 58 3.858247 ACCAACCGAAAGAGTAGCATAC 58.142 45.455 0.00 0.00 43.47 2.39
58 59 4.250464 CAACCAACCGAAAGAGTAGCATA 58.750 43.478 0.00 0.00 0.00 3.14
59 60 3.074412 CAACCAACCGAAAGAGTAGCAT 58.926 45.455 0.00 0.00 0.00 3.79
60 61 2.158871 ACAACCAACCGAAAGAGTAGCA 60.159 45.455 0.00 0.00 0.00 3.49
61 62 2.223377 CACAACCAACCGAAAGAGTAGC 59.777 50.000 0.00 0.00 0.00 3.58
62 63 3.724374 TCACAACCAACCGAAAGAGTAG 58.276 45.455 0.00 0.00 0.00 2.57
63 64 3.823281 TCACAACCAACCGAAAGAGTA 57.177 42.857 0.00 0.00 0.00 2.59
64 65 2.702592 TCACAACCAACCGAAAGAGT 57.297 45.000 0.00 0.00 0.00 3.24
65 66 3.315191 ACATTCACAACCAACCGAAAGAG 59.685 43.478 0.00 0.00 0.00 2.85
66 67 3.283751 ACATTCACAACCAACCGAAAGA 58.716 40.909 0.00 0.00 0.00 2.52
67 68 3.708563 ACATTCACAACCAACCGAAAG 57.291 42.857 0.00 0.00 0.00 2.62
68 69 3.775202 CAACATTCACAACCAACCGAAA 58.225 40.909 0.00 0.00 0.00 3.46
69 70 2.480416 GCAACATTCACAACCAACCGAA 60.480 45.455 0.00 0.00 0.00 4.30
70 71 1.066303 GCAACATTCACAACCAACCGA 59.934 47.619 0.00 0.00 0.00 4.69
71 72 1.486439 GCAACATTCACAACCAACCG 58.514 50.000 0.00 0.00 0.00 4.44
72 73 1.412343 AGGCAACATTCACAACCAACC 59.588 47.619 0.00 0.00 41.41 3.77
73 74 2.100584 TCAGGCAACATTCACAACCAAC 59.899 45.455 0.00 0.00 41.41 3.77
74 75 2.382882 TCAGGCAACATTCACAACCAA 58.617 42.857 0.00 0.00 41.41 3.67
75 76 2.064434 TCAGGCAACATTCACAACCA 57.936 45.000 0.00 0.00 41.41 3.67
76 77 2.353011 CCATCAGGCAACATTCACAACC 60.353 50.000 0.00 0.00 41.41 3.77
77 78 2.950433 CCATCAGGCAACATTCACAAC 58.050 47.619 0.00 0.00 41.41 3.32
109 110 9.959721 TTTAGATAAAAGGCATTAGTCTGACTT 57.040 29.630 16.53 0.00 46.59 3.01
110 111 9.959721 TTTTAGATAAAAGGCATTAGTCTGACT 57.040 29.630 15.57 15.57 35.44 3.41
135 136 3.686016 ACTGACCATGGCGATACTTTTT 58.314 40.909 13.04 0.00 0.00 1.94
136 137 3.055094 AGACTGACCATGGCGATACTTTT 60.055 43.478 13.04 0.00 0.00 2.27
137 138 2.501723 AGACTGACCATGGCGATACTTT 59.498 45.455 13.04 0.00 0.00 2.66
138 139 2.111384 AGACTGACCATGGCGATACTT 58.889 47.619 13.04 0.00 0.00 2.24
139 140 1.781786 AGACTGACCATGGCGATACT 58.218 50.000 13.04 3.50 0.00 2.12
140 141 2.205074 CAAGACTGACCATGGCGATAC 58.795 52.381 13.04 0.90 0.00 2.24
141 142 1.473257 GCAAGACTGACCATGGCGATA 60.473 52.381 13.04 0.00 0.00 2.92
142 143 0.745845 GCAAGACTGACCATGGCGAT 60.746 55.000 13.04 0.00 0.00 4.58
143 144 1.375908 GCAAGACTGACCATGGCGA 60.376 57.895 13.04 0.00 0.00 5.54
144 145 2.401766 GGCAAGACTGACCATGGCG 61.402 63.158 13.04 2.90 0.00 5.69
145 146 2.401766 CGGCAAGACTGACCATGGC 61.402 63.158 13.04 5.35 35.24 4.40
146 147 1.003355 ACGGCAAGACTGACCATGG 60.003 57.895 11.19 11.19 0.00 3.66
147 148 1.021390 GGACGGCAAGACTGACCATG 61.021 60.000 0.00 0.00 39.10 3.66
148 149 1.296715 GGACGGCAAGACTGACCAT 59.703 57.895 0.00 0.00 39.10 3.55
149 150 2.741092 GGACGGCAAGACTGACCA 59.259 61.111 0.00 0.00 39.10 4.02
150 151 2.432628 CGGACGGCAAGACTGACC 60.433 66.667 0.00 0.00 36.26 4.02
151 152 3.112709 GCGGACGGCAAGACTGAC 61.113 66.667 0.00 0.00 42.87 3.51
161 162 3.121030 CTTCTGCCTTGCGGACGG 61.121 66.667 0.00 0.00 44.15 4.79
162 163 2.357517 ACTTCTGCCTTGCGGACG 60.358 61.111 0.00 0.00 44.15 4.79
163 164 2.035442 GGACTTCTGCCTTGCGGAC 61.035 63.158 0.00 0.00 44.15 4.79
164 165 0.902984 TAGGACTTCTGCCTTGCGGA 60.903 55.000 0.00 0.00 42.66 5.54
165 166 0.460987 CTAGGACTTCTGCCTTGCGG 60.461 60.000 0.00 0.00 36.96 5.69
166 167 0.460987 CCTAGGACTTCTGCCTTGCG 60.461 60.000 1.05 0.00 36.96 4.85
167 168 0.905357 TCCTAGGACTTCTGCCTTGC 59.095 55.000 7.62 0.00 36.96 4.01
168 169 1.902508 TGTCCTAGGACTTCTGCCTTG 59.097 52.381 35.83 0.00 44.80 3.61
169 170 2.183679 CTGTCCTAGGACTTCTGCCTT 58.816 52.381 35.83 0.00 44.80 4.35
170 171 1.359474 TCTGTCCTAGGACTTCTGCCT 59.641 52.381 35.83 0.00 44.80 4.75
171 172 1.853963 TCTGTCCTAGGACTTCTGCC 58.146 55.000 35.83 13.99 44.80 4.85
172 173 2.093921 GGTTCTGTCCTAGGACTTCTGC 60.094 54.545 35.83 22.97 44.80 4.26
173 174 2.498078 GGGTTCTGTCCTAGGACTTCTG 59.502 54.545 35.83 24.02 44.80 3.02
174 175 2.560158 GGGGTTCTGTCCTAGGACTTCT 60.560 54.545 35.83 0.00 44.80 2.85
175 176 1.832366 GGGGTTCTGTCCTAGGACTTC 59.168 57.143 35.83 23.50 44.80 3.01
176 177 1.151413 TGGGGTTCTGTCCTAGGACTT 59.849 52.381 35.83 0.00 44.80 3.01
177 178 0.790993 TGGGGTTCTGTCCTAGGACT 59.209 55.000 35.83 0.00 44.80 3.85
178 179 1.278413 GTTGGGGTTCTGTCCTAGGAC 59.722 57.143 31.61 31.61 44.77 3.85
179 180 1.132657 TGTTGGGGTTCTGTCCTAGGA 60.133 52.381 7.62 7.62 0.00 2.94
180 181 1.358152 TGTTGGGGTTCTGTCCTAGG 58.642 55.000 0.82 0.82 0.00 3.02
181 182 2.637872 TCTTGTTGGGGTTCTGTCCTAG 59.362 50.000 0.00 0.00 0.00 3.02
182 183 2.370849 GTCTTGTTGGGGTTCTGTCCTA 59.629 50.000 0.00 0.00 0.00 2.94
183 184 1.143073 GTCTTGTTGGGGTTCTGTCCT 59.857 52.381 0.00 0.00 0.00 3.85
184 185 1.133915 TGTCTTGTTGGGGTTCTGTCC 60.134 52.381 0.00 0.00 0.00 4.02
185 186 2.341846 TGTCTTGTTGGGGTTCTGTC 57.658 50.000 0.00 0.00 0.00 3.51
186 187 2.758423 GTTTGTCTTGTTGGGGTTCTGT 59.242 45.455 0.00 0.00 0.00 3.41
187 188 2.100749 GGTTTGTCTTGTTGGGGTTCTG 59.899 50.000 0.00 0.00 0.00 3.02
188 189 2.384828 GGTTTGTCTTGTTGGGGTTCT 58.615 47.619 0.00 0.00 0.00 3.01
189 190 1.411246 GGGTTTGTCTTGTTGGGGTTC 59.589 52.381 0.00 0.00 0.00 3.62
190 191 1.273324 TGGGTTTGTCTTGTTGGGGTT 60.273 47.619 0.00 0.00 0.00 4.11
191 192 0.336737 TGGGTTTGTCTTGTTGGGGT 59.663 50.000 0.00 0.00 0.00 4.95
192 193 1.490574 TTGGGTTTGTCTTGTTGGGG 58.509 50.000 0.00 0.00 0.00 4.96
193 194 2.234908 TGTTTGGGTTTGTCTTGTTGGG 59.765 45.455 0.00 0.00 0.00 4.12
194 195 3.056179 ACTGTTTGGGTTTGTCTTGTTGG 60.056 43.478 0.00 0.00 0.00 3.77
195 196 4.186856 ACTGTTTGGGTTTGTCTTGTTG 57.813 40.909 0.00 0.00 0.00 3.33
196 197 4.767928 TGTACTGTTTGGGTTTGTCTTGTT 59.232 37.500 0.00 0.00 0.00 2.83
197 198 4.337145 TGTACTGTTTGGGTTTGTCTTGT 58.663 39.130 0.00 0.00 0.00 3.16
198 199 4.974368 TGTACTGTTTGGGTTTGTCTTG 57.026 40.909 0.00 0.00 0.00 3.02
199 200 4.158949 GGTTGTACTGTTTGGGTTTGTCTT 59.841 41.667 0.00 0.00 0.00 3.01
200 201 3.697542 GGTTGTACTGTTTGGGTTTGTCT 59.302 43.478 0.00 0.00 0.00 3.41
201 202 3.444388 TGGTTGTACTGTTTGGGTTTGTC 59.556 43.478 0.00 0.00 0.00 3.18
202 203 3.432378 TGGTTGTACTGTTTGGGTTTGT 58.568 40.909 0.00 0.00 0.00 2.83
203 204 3.736740 GCTGGTTGTACTGTTTGGGTTTG 60.737 47.826 0.00 0.00 0.00 2.93
204 205 2.429250 GCTGGTTGTACTGTTTGGGTTT 59.571 45.455 0.00 0.00 0.00 3.27
205 206 2.028876 GCTGGTTGTACTGTTTGGGTT 58.971 47.619 0.00 0.00 0.00 4.11
206 207 1.687563 GCTGGTTGTACTGTTTGGGT 58.312 50.000 0.00 0.00 0.00 4.51
207 208 0.591170 CGCTGGTTGTACTGTTTGGG 59.409 55.000 0.00 0.00 0.00 4.12
208 209 0.040425 GCGCTGGTTGTACTGTTTGG 60.040 55.000 0.00 0.00 0.00 3.28
209 210 0.660488 TGCGCTGGTTGTACTGTTTG 59.340 50.000 9.73 0.00 0.00 2.93
210 211 1.535462 GATGCGCTGGTTGTACTGTTT 59.465 47.619 9.73 0.00 0.00 2.83
211 212 1.156736 GATGCGCTGGTTGTACTGTT 58.843 50.000 9.73 0.00 0.00 3.16
212 213 0.321671 AGATGCGCTGGTTGTACTGT 59.678 50.000 9.73 0.00 0.00 3.55
213 214 1.442769 AAGATGCGCTGGTTGTACTG 58.557 50.000 9.73 0.00 0.00 2.74
214 215 1.806542 CAAAGATGCGCTGGTTGTACT 59.193 47.619 9.73 0.00 0.00 2.73
215 216 1.729149 GCAAAGATGCGCTGGTTGTAC 60.729 52.381 9.73 0.00 43.83 2.90
216 217 0.521291 GCAAAGATGCGCTGGTTGTA 59.479 50.000 9.73 0.00 43.83 2.41
217 218 1.286880 GCAAAGATGCGCTGGTTGT 59.713 52.632 9.73 0.00 43.83 3.32
218 219 4.157817 GCAAAGATGCGCTGGTTG 57.842 55.556 9.73 9.03 43.83 3.77
227 228 2.056223 CCAGGGGCAGGCAAAGATG 61.056 63.158 0.00 0.00 0.00 2.90
228 229 1.587522 ATCCAGGGGCAGGCAAAGAT 61.588 55.000 0.00 0.00 0.00 2.40
229 230 2.240918 ATCCAGGGGCAGGCAAAGA 61.241 57.895 0.00 0.00 0.00 2.52
230 231 2.056223 CATCCAGGGGCAGGCAAAG 61.056 63.158 0.00 0.00 0.00 2.77
231 232 2.037687 CATCCAGGGGCAGGCAAA 59.962 61.111 0.00 0.00 0.00 3.68
232 233 4.064768 CCATCCAGGGGCAGGCAA 62.065 66.667 0.00 0.00 0.00 4.52
234 235 3.078843 AATCCATCCAGGGGCAGGC 62.079 63.158 0.00 0.00 38.24 4.85
235 236 1.152610 CAATCCATCCAGGGGCAGG 60.153 63.158 0.00 0.00 38.24 4.85
236 237 0.032813 AACAATCCATCCAGGGGCAG 60.033 55.000 0.00 0.00 38.24 4.85
237 238 0.324552 CAACAATCCATCCAGGGGCA 60.325 55.000 0.00 0.00 38.24 5.36
238 239 0.033208 TCAACAATCCATCCAGGGGC 60.033 55.000 0.00 0.00 38.24 5.80
239 240 2.313317 CATCAACAATCCATCCAGGGG 58.687 52.381 0.00 0.00 38.24 4.79
240 241 1.684983 GCATCAACAATCCATCCAGGG 59.315 52.381 0.00 0.00 38.24 4.45
241 242 2.361119 CAGCATCAACAATCCATCCAGG 59.639 50.000 0.00 0.00 39.47 4.45
242 243 2.223735 GCAGCATCAACAATCCATCCAG 60.224 50.000 0.00 0.00 0.00 3.86
243 244 1.752498 GCAGCATCAACAATCCATCCA 59.248 47.619 0.00 0.00 0.00 3.41
244 245 2.029623 AGCAGCATCAACAATCCATCC 58.970 47.619 0.00 0.00 0.00 3.51
245 246 2.798499 GCAGCAGCATCAACAATCCATC 60.798 50.000 0.00 0.00 41.58 3.51
246 247 1.136305 GCAGCAGCATCAACAATCCAT 59.864 47.619 0.00 0.00 41.58 3.41
247 248 0.528924 GCAGCAGCATCAACAATCCA 59.471 50.000 0.00 0.00 41.58 3.41
248 249 0.179119 GGCAGCAGCATCAACAATCC 60.179 55.000 2.65 0.00 44.61 3.01
249 250 0.524816 CGGCAGCAGCATCAACAATC 60.525 55.000 2.65 0.00 44.61 2.67
250 251 1.509463 CGGCAGCAGCATCAACAAT 59.491 52.632 2.65 0.00 44.61 2.71
251 252 2.956194 CGGCAGCAGCATCAACAA 59.044 55.556 2.65 0.00 44.61 2.83
252 253 3.740397 GCGGCAGCAGCATCAACA 61.740 61.111 13.20 0.00 44.61 3.33
253 254 4.824166 CGCGGCAGCAGCATCAAC 62.824 66.667 18.13 0.00 45.49 3.18
289 290 0.613572 TATGGTGGTGGTCTGCGAGA 60.614 55.000 0.00 0.00 0.00 4.04
293 294 0.179018 GGGATATGGTGGTGGTCTGC 60.179 60.000 0.00 0.00 0.00 4.26
303 304 2.056906 GAGCGCTTGGGGGATATGGT 62.057 60.000 13.26 0.00 0.00 3.55
306 307 2.743718 CGAGCGCTTGGGGGATAT 59.256 61.111 17.45 0.00 0.00 1.63
347 348 3.123050 CAACTTGCGTATCGATGGATCA 58.877 45.455 8.54 0.00 34.00 2.92
353 354 3.124636 GTCAAACCAACTTGCGTATCGAT 59.875 43.478 2.16 2.16 0.00 3.59
355 356 2.478894 AGTCAAACCAACTTGCGTATCG 59.521 45.455 0.00 0.00 0.00 2.92
359 360 2.559998 CAAGTCAAACCAACTTGCGT 57.440 45.000 3.34 0.00 44.94 5.24
366 367 0.457851 CGCAACCCAAGTCAAACCAA 59.542 50.000 0.00 0.00 0.00 3.67
370 371 0.821711 CTCCCGCAACCCAAGTCAAA 60.822 55.000 0.00 0.00 0.00 2.69
445 463 1.674359 ACCATGTTCGCACTTCACAA 58.326 45.000 0.00 0.00 0.00 3.33
461 479 3.325716 AGCCTTAGAAAACCGAGTAACCA 59.674 43.478 0.00 0.00 0.00 3.67
463 481 4.153655 CCAAGCCTTAGAAAACCGAGTAAC 59.846 45.833 0.00 0.00 0.00 2.50
477 495 1.202371 CGACGTCTATGCCAAGCCTTA 60.202 52.381 14.70 0.00 0.00 2.69
481 499 1.883084 CCCGACGTCTATGCCAAGC 60.883 63.158 14.70 0.00 0.00 4.01
485 503 2.416260 GGACCCGACGTCTATGCC 59.584 66.667 14.70 6.32 41.64 4.40
491 509 4.368543 GTGGTGGGACCCGACGTC 62.369 72.222 5.18 5.18 37.50 4.34
496 514 4.373116 CTCGTGTGGTGGGACCCG 62.373 72.222 5.91 0.00 37.50 5.28
498 516 2.657237 CTCTCGTGTGGTGGGACC 59.343 66.667 0.00 0.00 39.22 4.46
518 536 5.867716 CAGTGGAGCGGGTTTATATGTATAC 59.132 44.000 0.00 0.00 0.00 1.47
523 546 1.873591 GCAGTGGAGCGGGTTTATATG 59.126 52.381 0.00 0.00 0.00 1.78
534 557 1.372087 CTCCGAAATGGCAGTGGAGC 61.372 60.000 8.18 0.00 39.74 4.70
539 562 1.507140 TATCCCTCCGAAATGGCAGT 58.493 50.000 0.00 0.00 37.80 4.40
540 563 2.638480 TTATCCCTCCGAAATGGCAG 57.362 50.000 0.00 0.00 37.80 4.85
541 564 3.650942 AGTATTATCCCTCCGAAATGGCA 59.349 43.478 0.00 0.00 37.80 4.92
542 565 4.287766 AGTATTATCCCTCCGAAATGGC 57.712 45.455 0.00 0.00 37.80 4.40
543 566 6.437793 AGTCTAGTATTATCCCTCCGAAATGG 59.562 42.308 0.00 0.00 40.09 3.16
545 568 7.177041 GTGAGTCTAGTATTATCCCTCCGAAAT 59.823 40.741 0.00 0.00 0.00 2.17
546 569 6.489361 GTGAGTCTAGTATTATCCCTCCGAAA 59.511 42.308 0.00 0.00 0.00 3.46
548 571 5.558818 GTGAGTCTAGTATTATCCCTCCGA 58.441 45.833 0.00 0.00 0.00 4.55
549 572 4.392445 CGTGAGTCTAGTATTATCCCTCCG 59.608 50.000 0.00 0.00 0.00 4.63
550 573 4.701171 CCGTGAGTCTAGTATTATCCCTCC 59.299 50.000 0.00 0.00 0.00 4.30
551 574 4.701171 CCCGTGAGTCTAGTATTATCCCTC 59.299 50.000 0.00 0.00 0.00 4.30
552 575 4.664392 CCCGTGAGTCTAGTATTATCCCT 58.336 47.826 0.00 0.00 0.00 4.20
553 576 3.193056 GCCCGTGAGTCTAGTATTATCCC 59.807 52.174 0.00 0.00 0.00 3.85
554 577 4.080687 AGCCCGTGAGTCTAGTATTATCC 58.919 47.826 0.00 0.00 0.00 2.59
555 578 4.156373 GGAGCCCGTGAGTCTAGTATTATC 59.844 50.000 0.00 0.00 0.00 1.75
556 579 4.080687 GGAGCCCGTGAGTCTAGTATTAT 58.919 47.826 0.00 0.00 0.00 1.28
557 580 3.137913 AGGAGCCCGTGAGTCTAGTATTA 59.862 47.826 0.00 0.00 0.00 0.98
558 581 2.091775 AGGAGCCCGTGAGTCTAGTATT 60.092 50.000 0.00 0.00 0.00 1.89
559 582 1.495574 AGGAGCCCGTGAGTCTAGTAT 59.504 52.381 0.00 0.00 0.00 2.12
560 583 0.917533 AGGAGCCCGTGAGTCTAGTA 59.082 55.000 0.00 0.00 0.00 1.82
561 584 0.039911 AAGGAGCCCGTGAGTCTAGT 59.960 55.000 0.00 0.00 0.00 2.57
562 585 0.741915 GAAGGAGCCCGTGAGTCTAG 59.258 60.000 0.00 0.00 0.00 2.43
563 586 0.039180 TGAAGGAGCCCGTGAGTCTA 59.961 55.000 0.00 0.00 0.00 2.59
564 587 0.832135 TTGAAGGAGCCCGTGAGTCT 60.832 55.000 0.00 0.00 0.00 3.24
565 588 0.670854 GTTGAAGGAGCCCGTGAGTC 60.671 60.000 0.00 0.00 0.00 3.36
566 589 1.371558 GTTGAAGGAGCCCGTGAGT 59.628 57.895 0.00 0.00 0.00 3.41
567 590 0.671781 CTGTTGAAGGAGCCCGTGAG 60.672 60.000 0.00 0.00 0.00 3.51
568 591 1.118965 TCTGTTGAAGGAGCCCGTGA 61.119 55.000 0.00 0.00 0.00 4.35
569 592 0.951040 GTCTGTTGAAGGAGCCCGTG 60.951 60.000 0.00 0.00 0.00 4.94
570 593 1.371558 GTCTGTTGAAGGAGCCCGT 59.628 57.895 0.00 0.00 0.00 5.28
571 594 1.376037 GGTCTGTTGAAGGAGCCCG 60.376 63.158 0.00 0.00 0.00 6.13
572 595 0.402121 AAGGTCTGTTGAAGGAGCCC 59.598 55.000 0.00 0.00 0.00 5.19
573 596 1.072331 TGAAGGTCTGTTGAAGGAGCC 59.928 52.381 0.00 0.00 0.00 4.70
574 597 2.147150 GTGAAGGTCTGTTGAAGGAGC 58.853 52.381 0.00 0.00 0.00 4.70
575 598 2.408050 CGTGAAGGTCTGTTGAAGGAG 58.592 52.381 0.00 0.00 0.00 3.69
576 599 1.070134 CCGTGAAGGTCTGTTGAAGGA 59.930 52.381 0.00 0.00 34.51 3.36
577 600 1.070134 TCCGTGAAGGTCTGTTGAAGG 59.930 52.381 0.00 0.00 41.99 3.46
578 601 2.224066 ACTCCGTGAAGGTCTGTTGAAG 60.224 50.000 0.00 0.00 41.99 3.02
579 602 1.760613 ACTCCGTGAAGGTCTGTTGAA 59.239 47.619 0.00 0.00 41.99 2.69
580 603 1.068588 CACTCCGTGAAGGTCTGTTGA 59.931 52.381 0.00 0.00 41.99 3.18
581 604 1.502231 CACTCCGTGAAGGTCTGTTG 58.498 55.000 0.00 0.00 41.99 3.33
582 605 0.393077 CCACTCCGTGAAGGTCTGTT 59.607 55.000 0.00 0.00 41.99 3.16
583 606 2.050269 CCACTCCGTGAAGGTCTGT 58.950 57.895 0.00 0.00 41.99 3.41
584 607 1.374758 GCCACTCCGTGAAGGTCTG 60.375 63.158 0.00 0.00 41.99 3.51
585 608 2.584391 GGCCACTCCGTGAAGGTCT 61.584 63.158 0.00 0.00 41.99 3.85
586 609 1.255667 TAGGCCACTCCGTGAAGGTC 61.256 60.000 5.01 0.00 41.99 3.85
587 610 1.229082 TAGGCCACTCCGTGAAGGT 60.229 57.895 5.01 0.00 41.99 3.50
588 611 1.218316 GTAGGCCACTCCGTGAAGG 59.782 63.158 5.01 0.00 40.77 3.46
589 612 1.153823 CGTAGGCCACTCCGTGAAG 60.154 63.158 5.01 0.00 40.77 3.02
590 613 1.904865 ACGTAGGCCACTCCGTGAA 60.905 57.895 5.01 0.00 37.91 3.18
591 614 2.282674 ACGTAGGCCACTCCGTGA 60.283 61.111 5.01 0.00 37.91 4.35
922 945 6.763715 TGATTAAGTATTAGTGGCCAGGAT 57.236 37.500 5.11 2.76 0.00 3.24
923 946 6.354130 GTTGATTAAGTATTAGTGGCCAGGA 58.646 40.000 5.11 0.00 0.00 3.86
924 947 5.531287 GGTTGATTAAGTATTAGTGGCCAGG 59.469 44.000 5.11 0.00 0.00 4.45
925 948 5.531287 GGGTTGATTAAGTATTAGTGGCCAG 59.469 44.000 5.11 0.00 0.00 4.85
926 949 5.442391 GGGTTGATTAAGTATTAGTGGCCA 58.558 41.667 0.00 0.00 0.00 5.36
927 950 4.825634 GGGGTTGATTAAGTATTAGTGGCC 59.174 45.833 0.00 0.00 0.00 5.36
928 951 4.514066 CGGGGTTGATTAAGTATTAGTGGC 59.486 45.833 0.00 0.00 0.00 5.01
929 952 5.677567 ACGGGGTTGATTAAGTATTAGTGG 58.322 41.667 0.00 0.00 0.00 4.00
930 953 8.606602 GTTTACGGGGTTGATTAAGTATTAGTG 58.393 37.037 0.00 0.00 0.00 2.74
931 954 8.542926 AGTTTACGGGGTTGATTAAGTATTAGT 58.457 33.333 0.00 0.00 0.00 2.24
932 955 8.953368 AGTTTACGGGGTTGATTAAGTATTAG 57.047 34.615 0.00 0.00 0.00 1.73
933 956 7.986889 GGAGTTTACGGGGTTGATTAAGTATTA 59.013 37.037 0.00 0.00 0.00 0.98
934 957 6.825213 GGAGTTTACGGGGTTGATTAAGTATT 59.175 38.462 0.00 0.00 0.00 1.89
935 958 6.351711 GGAGTTTACGGGGTTGATTAAGTAT 58.648 40.000 0.00 0.00 0.00 2.12
936 959 5.338300 GGGAGTTTACGGGGTTGATTAAGTA 60.338 44.000 0.00 0.00 0.00 2.24
937 960 4.566278 GGGAGTTTACGGGGTTGATTAAGT 60.566 45.833 0.00 0.00 0.00 2.24
938 961 3.943381 GGGAGTTTACGGGGTTGATTAAG 59.057 47.826 0.00 0.00 0.00 1.85
939 962 3.619487 CGGGAGTTTACGGGGTTGATTAA 60.619 47.826 0.00 0.00 0.00 1.40
940 963 2.093553 CGGGAGTTTACGGGGTTGATTA 60.094 50.000 0.00 0.00 0.00 1.75
941 964 1.339342 CGGGAGTTTACGGGGTTGATT 60.339 52.381 0.00 0.00 0.00 2.57
942 965 0.251073 CGGGAGTTTACGGGGTTGAT 59.749 55.000 0.00 0.00 0.00 2.57
943 966 1.120795 ACGGGAGTTTACGGGGTTGA 61.121 55.000 0.00 0.00 43.33 3.18
944 967 0.952010 CACGGGAGTTTACGGGGTTG 60.952 60.000 0.00 0.00 44.67 3.77
945 968 1.120795 TCACGGGAGTTTACGGGGTT 61.121 55.000 0.00 0.00 44.67 4.11
946 969 1.120795 TTCACGGGAGTTTACGGGGT 61.121 55.000 0.00 0.00 44.67 4.95
947 970 0.671472 GTTCACGGGAGTTTACGGGG 60.671 60.000 0.00 0.00 44.67 5.73
948 971 0.671472 GGTTCACGGGAGTTTACGGG 60.671 60.000 0.00 0.00 44.67 5.28
949 972 0.671472 GGGTTCACGGGAGTTTACGG 60.671 60.000 0.00 0.00 44.67 4.02
950 973 0.671472 GGGGTTCACGGGAGTTTACG 60.671 60.000 0.00 0.00 44.67 3.18
951 974 0.321919 GGGGGTTCACGGGAGTTTAC 60.322 60.000 0.00 0.00 44.67 2.01
952 975 2.068915 GGGGGTTCACGGGAGTTTA 58.931 57.895 0.00 0.00 44.67 2.01
953 976 2.841317 GGGGGTTCACGGGAGTTT 59.159 61.111 0.00 0.00 44.67 2.66
967 990 0.744414 CAATGCTACACTCACGGGGG 60.744 60.000 0.00 0.00 0.00 5.40
968 991 1.369091 GCAATGCTACACTCACGGGG 61.369 60.000 0.00 0.00 0.00 5.73
969 992 1.369091 GGCAATGCTACACTCACGGG 61.369 60.000 4.82 0.00 0.00 5.28
970 993 1.369091 GGGCAATGCTACACTCACGG 61.369 60.000 4.82 0.00 0.00 4.94
971 994 0.673333 TGGGCAATGCTACACTCACG 60.673 55.000 4.82 0.00 0.00 4.35
972 995 1.755179 ATGGGCAATGCTACACTCAC 58.245 50.000 4.82 0.00 0.00 3.51
973 996 2.512692 AATGGGCAATGCTACACTCA 57.487 45.000 4.82 0.00 0.00 3.41
974 997 2.223340 CGAAATGGGCAATGCTACACTC 60.223 50.000 4.82 5.05 0.00 3.51
975 998 1.745087 CGAAATGGGCAATGCTACACT 59.255 47.619 4.82 0.00 0.00 3.55
976 999 1.202290 CCGAAATGGGCAATGCTACAC 60.202 52.381 4.82 0.00 0.00 2.90
977 1000 1.102154 CCGAAATGGGCAATGCTACA 58.898 50.000 4.82 5.36 0.00 2.74
978 1001 1.334869 CTCCGAAATGGGCAATGCTAC 59.665 52.381 4.82 0.00 38.76 3.58
979 1002 1.679139 CTCCGAAATGGGCAATGCTA 58.321 50.000 4.82 0.00 38.76 3.49
980 1003 1.669999 GCTCCGAAATGGGCAATGCT 61.670 55.000 4.82 0.00 38.76 3.79
981 1004 1.227060 GCTCCGAAATGGGCAATGC 60.227 57.895 0.00 0.00 38.76 3.56
982 1005 0.748450 ATGCTCCGAAATGGGCAATG 59.252 50.000 0.00 0.00 43.94 2.82
983 1006 0.748450 CATGCTCCGAAATGGGCAAT 59.252 50.000 0.00 0.00 43.94 3.56
984 1007 0.323269 TCATGCTCCGAAATGGGCAA 60.323 50.000 0.00 0.00 43.94 4.52
985 1008 0.323269 TTCATGCTCCGAAATGGGCA 60.323 50.000 0.00 0.00 44.55 5.36
986 1009 0.101219 GTTCATGCTCCGAAATGGGC 59.899 55.000 0.00 0.00 38.76 5.36
987 1010 1.462616 TGTTCATGCTCCGAAATGGG 58.537 50.000 0.00 0.00 38.76 4.00
988 1011 2.228582 TGTTGTTCATGCTCCGAAATGG 59.771 45.455 0.00 0.00 40.09 3.16
1002 1025 6.147328 GGATTACTGGACTAGTGTTGTTGTTC 59.853 42.308 0.00 0.00 40.65 3.18
1085 1108 2.644992 CACCAAAACAGGAGCCGC 59.355 61.111 0.00 0.00 0.00 6.53
1476 4227 6.461640 TCTTAGACAAACTACCAAACTAGCC 58.538 40.000 0.00 0.00 0.00 3.93
1502 4253 0.875059 GAACTGCCACGCTAGCTTTT 59.125 50.000 13.93 0.00 0.00 2.27
1580 4349 5.133221 CAAAGAGAAAGGGAAAACAGAGGA 58.867 41.667 0.00 0.00 0.00 3.71
1710 4539 5.185454 ACAGAAACAGACAAGAACATGTGA 58.815 37.500 0.00 0.00 32.57 3.58
1721 4550 3.312421 GCAAGCAACTACAGAAACAGACA 59.688 43.478 0.00 0.00 0.00 3.41
1780 4635 7.939782 TCACAATGCTTTCTTTCACTTGATTA 58.060 30.769 0.00 0.00 0.00 1.75
1781 4636 6.808829 TCACAATGCTTTCTTTCACTTGATT 58.191 32.000 0.00 0.00 0.00 2.57
1858 4718 0.804933 GTAACCGGGCGACTGCTAAG 60.805 60.000 6.32 0.00 42.25 2.18
1939 4799 7.966246 AATCAGCAACAATTAAATTTCAGCA 57.034 28.000 0.00 0.00 0.00 4.41
1940 4800 8.497554 TGAAATCAGCAACAATTAAATTTCAGC 58.502 29.630 0.00 0.00 36.97 4.26
1982 4842 4.624913 TGATTCAGGTACTCCCTCTGATT 58.375 43.478 0.43 0.00 43.86 2.57
2014 4874 6.817641 CCATTACCCGTGTACACACTTATTAA 59.182 38.462 24.98 12.65 44.34 1.40
2015 4875 6.339730 CCATTACCCGTGTACACACTTATTA 58.660 40.000 24.98 4.96 44.34 0.98
2037 4897 2.038952 CCTGTGAGATGAGAACAACCCA 59.961 50.000 0.00 0.00 0.00 4.51
2053 4913 1.162698 CAGAATGGCTGTGACCTGTG 58.837 55.000 0.00 0.00 39.85 3.66
2054 4914 1.059098 TCAGAATGGCTGTGACCTGT 58.941 50.000 0.00 0.00 45.14 4.00
2055 4915 2.082231 CTTCAGAATGGCTGTGACCTG 58.918 52.381 0.00 0.00 45.14 4.00
2056 4916 1.612726 GCTTCAGAATGGCTGTGACCT 60.613 52.381 0.00 0.00 45.14 3.85
2057 4917 0.807496 GCTTCAGAATGGCTGTGACC 59.193 55.000 0.00 0.00 45.14 4.02
2058 4918 1.198637 GTGCTTCAGAATGGCTGTGAC 59.801 52.381 0.00 0.00 45.14 3.67
2082 4942 5.300792 TCTTCCCTTGTAAAACATTGTGGTC 59.699 40.000 0.00 0.00 0.00 4.02
2228 5090 9.663904 CACATGGTTATAAAGATTTGTATTCGG 57.336 33.333 0.00 0.00 0.00 4.30
2257 5119 7.013655 CCACTTGTCATGGAATATAAAAGGGAG 59.986 40.741 0.00 0.00 39.87 4.30
2425 5288 4.748892 ACATAAGACCATGAGACGTCTTG 58.251 43.478 21.08 14.76 46.26 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.