Multiple sequence alignment - TraesCS3D01G051000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G051000 chr3D 100.000 4356 0 0 1 4356 20012127 20016482 0.000000e+00 8045.0
1 TraesCS3D01G051000 chr3D 89.277 401 36 5 3809 4207 20038976 20039371 3.030000e-136 496.0
2 TraesCS3D01G051000 chr3D 82.897 497 64 14 3853 4340 20087110 20087594 1.120000e-115 427.0
3 TraesCS3D01G051000 chr3D 84.925 398 55 4 3809 4205 20140158 20140551 8.780000e-107 398.0
4 TraesCS3D01G051000 chr3D 85.714 280 28 9 3541 3817 20157258 20157528 7.130000e-73 285.0
5 TraesCS3D01G051000 chr3D 93.220 59 4 0 4283 4341 20331856 20331914 2.160000e-13 87.9
6 TraesCS3D01G051000 chr3A 93.662 3045 143 21 1323 4356 27761969 27764974 0.000000e+00 4508.0
7 TraesCS3D01G051000 chr3A 85.011 447 39 8 348 769 27760845 27761288 3.110000e-116 429.0
8 TraesCS3D01G051000 chr3A 78.378 370 37 26 838 1188 27761403 27761748 2.660000e-47 200.0
9 TraesCS3D01G051000 chr3B 91.142 2777 193 26 1365 4126 32457587 32460325 0.000000e+00 3716.0
10 TraesCS3D01G051000 chr3B 83.663 1010 86 30 348 1293 32456418 32457412 0.000000e+00 878.0
11 TraesCS3D01G051000 chr3B 87.719 684 68 9 3561 4233 32594682 32595360 0.000000e+00 784.0
12 TraesCS3D01G051000 chr3B 87.573 684 69 9 3561 4233 32537552 32538230 0.000000e+00 778.0
13 TraesCS3D01G051000 chr3B 87.461 638 67 9 3604 4233 32497299 32497931 0.000000e+00 723.0
14 TraesCS3D01G051000 chr3B 87.461 638 67 9 3604 4233 32566210 32566842 0.000000e+00 723.0
15 TraesCS3D01G051000 chr3B 94.118 238 9 3 4119 4356 32460345 32460577 1.490000e-94 357.0
16 TraesCS3D01G051000 chr3B 88.172 279 30 2 3541 3817 32724051 32724328 3.250000e-86 329.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G051000 chr3D 20012127 20016482 4355 False 8045.000000 8045 100.000000 1 4356 1 chr3D.!!$F1 4355
1 TraesCS3D01G051000 chr3A 27760845 27764974 4129 False 1712.333333 4508 85.683667 348 4356 3 chr3A.!!$F1 4008
2 TraesCS3D01G051000 chr3B 32456418 32460577 4159 False 1650.333333 3716 89.641000 348 4356 3 chr3B.!!$F6 4008
3 TraesCS3D01G051000 chr3B 32594682 32595360 678 False 784.000000 784 87.719000 3561 4233 1 chr3B.!!$F4 672
4 TraesCS3D01G051000 chr3B 32537552 32538230 678 False 778.000000 778 87.573000 3561 4233 1 chr3B.!!$F2 672
5 TraesCS3D01G051000 chr3B 32497299 32497931 632 False 723.000000 723 87.461000 3604 4233 1 chr3B.!!$F1 629
6 TraesCS3D01G051000 chr3B 32566210 32566842 632 False 723.000000 723 87.461000 3604 4233 1 chr3B.!!$F3 629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
186 187 0.036952 ATTGCACAGGGTCGAGTGAG 60.037 55.0 6.71 0.0 37.97 3.51 F
196 197 0.108804 GTCGAGTGAGCGGAATGGAA 60.109 55.0 0.00 0.0 0.00 3.53 F
1669 2034 0.040958 GACTGGCAAGAAAGCACACG 60.041 55.0 0.00 0.0 35.83 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1026 1136 0.034670 AGCAGAGTTGGATCCTTGGC 60.035 55.0 14.23 8.15 0.00 4.52 R
2157 2524 0.470268 CTGGCCTAGGTCTCCCTACC 60.470 65.0 15.92 2.75 42.66 3.18 R
3651 4032 0.682292 TATGCCCGTCATTATCGCCA 59.318 50.0 0.00 0.00 36.63 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.370364 CCTTGTGCCGCTAACATATTTT 57.630 40.909 0.00 0.00 0.00 1.82
22 23 4.104776 CCTTGTGCCGCTAACATATTTTG 58.895 43.478 0.00 0.00 0.00 2.44
23 24 3.143807 TGTGCCGCTAACATATTTTGC 57.856 42.857 0.00 0.00 0.00 3.68
24 25 2.489722 TGTGCCGCTAACATATTTTGCA 59.510 40.909 0.00 0.00 0.00 4.08
25 26 3.057245 TGTGCCGCTAACATATTTTGCAA 60.057 39.130 0.00 0.00 0.00 4.08
26 27 3.923461 GTGCCGCTAACATATTTTGCAAA 59.077 39.130 8.05 8.05 0.00 3.68
27 28 3.923461 TGCCGCTAACATATTTTGCAAAC 59.077 39.130 12.39 0.00 0.00 2.93
28 29 3.001168 GCCGCTAACATATTTTGCAAACG 60.001 43.478 12.39 8.62 0.00 3.60
29 30 4.162812 CCGCTAACATATTTTGCAAACGT 58.837 39.130 12.39 6.43 0.00 3.99
30 31 4.030083 CCGCTAACATATTTTGCAAACGTG 59.970 41.667 12.39 12.93 0.00 4.49
31 32 4.615121 CGCTAACATATTTTGCAAACGTGT 59.385 37.500 12.39 13.56 0.00 4.49
32 33 5.790988 CGCTAACATATTTTGCAAACGTGTA 59.209 36.000 12.39 3.49 0.00 2.90
33 34 6.467682 CGCTAACATATTTTGCAAACGTGTAT 59.532 34.615 12.39 4.92 0.00 2.29
34 35 7.511354 CGCTAACATATTTTGCAAACGTGTATG 60.511 37.037 12.39 17.87 0.00 2.39
35 36 6.388259 AACATATTTTGCAAACGTGTATGC 57.612 33.333 12.39 12.74 42.86 3.14
40 41 1.528129 TGCAAACGTGTATGCATGGA 58.472 45.000 16.97 0.00 46.87 3.41
41 42 1.882623 TGCAAACGTGTATGCATGGAA 59.117 42.857 16.97 0.00 46.87 3.53
42 43 2.491298 TGCAAACGTGTATGCATGGAAT 59.509 40.909 16.97 0.00 46.87 3.01
43 44 3.056962 TGCAAACGTGTATGCATGGAATT 60.057 39.130 16.97 0.00 46.87 2.17
44 45 3.925913 GCAAACGTGTATGCATGGAATTT 59.074 39.130 10.16 0.87 42.12 1.82
45 46 4.388469 GCAAACGTGTATGCATGGAATTTT 59.612 37.500 10.16 0.63 42.12 1.82
46 47 5.668376 GCAAACGTGTATGCATGGAATTTTG 60.668 40.000 10.16 13.58 42.12 2.44
47 48 4.782019 ACGTGTATGCATGGAATTTTGT 57.218 36.364 10.16 0.00 35.99 2.83
48 49 5.132897 ACGTGTATGCATGGAATTTTGTT 57.867 34.783 10.16 0.00 35.99 2.83
49 50 5.537188 ACGTGTATGCATGGAATTTTGTTT 58.463 33.333 10.16 0.00 35.99 2.83
50 51 5.988561 ACGTGTATGCATGGAATTTTGTTTT 59.011 32.000 10.16 0.00 35.99 2.43
51 52 6.073873 ACGTGTATGCATGGAATTTTGTTTTG 60.074 34.615 10.16 0.00 35.99 2.44
52 53 6.145209 CGTGTATGCATGGAATTTTGTTTTGA 59.855 34.615 10.16 0.00 0.00 2.69
53 54 7.307042 CGTGTATGCATGGAATTTTGTTTTGAA 60.307 33.333 10.16 0.00 0.00 2.69
54 55 8.341173 GTGTATGCATGGAATTTTGTTTTGAAA 58.659 29.630 10.16 0.00 0.00 2.69
55 56 8.341173 TGTATGCATGGAATTTTGTTTTGAAAC 58.659 29.630 10.16 0.00 39.33 2.78
56 57 6.998968 TGCATGGAATTTTGTTTTGAAACT 57.001 29.167 7.97 0.00 39.59 2.66
57 58 7.388460 TGCATGGAATTTTGTTTTGAAACTT 57.612 28.000 7.97 0.00 39.59 2.66
58 59 7.824672 TGCATGGAATTTTGTTTTGAAACTTT 58.175 26.923 7.97 0.00 39.59 2.66
59 60 7.967303 TGCATGGAATTTTGTTTTGAAACTTTC 59.033 29.630 7.97 0.00 39.59 2.62
60 61 7.967303 GCATGGAATTTTGTTTTGAAACTTTCA 59.033 29.630 7.97 0.00 39.59 2.69
75 76 8.245701 TGAAACTTTCAAACATTTTAAAGCGT 57.754 26.923 9.79 0.92 35.73 5.07
76 77 8.165428 TGAAACTTTCAAACATTTTAAAGCGTG 58.835 29.630 9.79 0.00 35.73 5.34
77 78 7.589574 AACTTTCAAACATTTTAAAGCGTGT 57.410 28.000 9.79 0.00 35.73 4.49
78 79 7.589574 ACTTTCAAACATTTTAAAGCGTGTT 57.410 28.000 9.79 8.85 35.73 3.32
79 80 8.690680 ACTTTCAAACATTTTAAAGCGTGTTA 57.309 26.923 12.90 1.33 35.73 2.41
80 81 9.141400 ACTTTCAAACATTTTAAAGCGTGTTAA 57.859 25.926 12.90 5.72 35.73 2.01
81 82 9.959775 CTTTCAAACATTTTAAAGCGTGTTAAA 57.040 25.926 12.90 10.64 33.99 1.52
110 111 5.975410 TTTTTCAAAAGCGGGTTTATGTG 57.025 34.783 5.50 1.30 0.00 3.21
111 112 4.657436 TTTCAAAAGCGGGTTTATGTGT 57.343 36.364 5.50 0.00 0.00 3.72
112 113 5.769484 TTTCAAAAGCGGGTTTATGTGTA 57.231 34.783 5.50 0.00 0.00 2.90
113 114 4.752661 TCAAAAGCGGGTTTATGTGTAC 57.247 40.909 5.50 0.00 0.00 2.90
114 115 3.502979 TCAAAAGCGGGTTTATGTGTACC 59.497 43.478 5.50 0.00 0.00 3.34
118 119 3.482147 GGGTTTATGTGTACCCGGG 57.518 57.895 22.25 22.25 44.25 5.73
119 120 0.620030 GGGTTTATGTGTACCCGGGT 59.380 55.000 32.66 32.66 44.25 5.28
120 121 1.004628 GGGTTTATGTGTACCCGGGTT 59.995 52.381 35.42 16.78 44.25 4.11
121 122 2.358957 GGTTTATGTGTACCCGGGTTC 58.641 52.381 35.42 28.38 0.00 3.62
122 123 2.026915 GGTTTATGTGTACCCGGGTTCT 60.027 50.000 35.42 13.82 0.00 3.01
123 124 3.264947 GTTTATGTGTACCCGGGTTCTC 58.735 50.000 35.42 27.19 0.00 2.87
124 125 2.537633 TATGTGTACCCGGGTTCTCT 57.462 50.000 35.42 18.14 0.00 3.10
125 126 1.192428 ATGTGTACCCGGGTTCTCTC 58.808 55.000 35.42 21.79 0.00 3.20
126 127 0.113776 TGTGTACCCGGGTTCTCTCT 59.886 55.000 35.42 7.20 0.00 3.10
127 128 1.264295 GTGTACCCGGGTTCTCTCTT 58.736 55.000 35.42 6.27 0.00 2.85
128 129 1.622312 GTGTACCCGGGTTCTCTCTTT 59.378 52.381 35.42 5.37 0.00 2.52
129 130 2.038164 GTGTACCCGGGTTCTCTCTTTT 59.962 50.000 35.42 4.46 0.00 2.27
130 131 2.301009 TGTACCCGGGTTCTCTCTTTTC 59.699 50.000 35.42 9.81 0.00 2.29
131 132 1.730851 ACCCGGGTTCTCTCTTTTCT 58.269 50.000 24.16 0.00 0.00 2.52
132 133 2.898662 ACCCGGGTTCTCTCTTTTCTA 58.101 47.619 24.16 0.00 0.00 2.10
133 134 2.566279 ACCCGGGTTCTCTCTTTTCTAC 59.434 50.000 24.16 0.00 0.00 2.59
134 135 2.565834 CCCGGGTTCTCTCTTTTCTACA 59.434 50.000 14.18 0.00 0.00 2.74
135 136 3.368531 CCCGGGTTCTCTCTTTTCTACAG 60.369 52.174 14.18 0.00 0.00 2.74
136 137 3.510360 CCGGGTTCTCTCTTTTCTACAGA 59.490 47.826 0.00 0.00 0.00 3.41
137 138 4.381079 CCGGGTTCTCTCTTTTCTACAGAG 60.381 50.000 0.00 0.00 39.45 3.35
138 139 4.218852 CGGGTTCTCTCTTTTCTACAGAGT 59.781 45.833 0.00 0.00 39.18 3.24
139 140 5.279056 CGGGTTCTCTCTTTTCTACAGAGTT 60.279 44.000 0.00 0.00 39.18 3.01
140 141 5.929415 GGGTTCTCTCTTTTCTACAGAGTTG 59.071 44.000 0.00 0.00 39.18 3.16
141 142 6.239345 GGGTTCTCTCTTTTCTACAGAGTTGA 60.239 42.308 0.00 0.00 39.18 3.18
142 143 7.382898 GGTTCTCTCTTTTCTACAGAGTTGAT 58.617 38.462 0.00 0.00 39.18 2.57
143 144 7.875554 GGTTCTCTCTTTTCTACAGAGTTGATT 59.124 37.037 0.00 0.00 39.18 2.57
144 145 9.267084 GTTCTCTCTTTTCTACAGAGTTGATTT 57.733 33.333 0.00 0.00 39.18 2.17
145 146 9.838339 TTCTCTCTTTTCTACAGAGTTGATTTT 57.162 29.630 0.00 0.00 39.18 1.82
146 147 9.838339 TCTCTCTTTTCTACAGAGTTGATTTTT 57.162 29.630 0.00 0.00 39.18 1.94
148 149 9.057089 TCTCTTTTCTACAGAGTTGATTTTTCC 57.943 33.333 0.00 0.00 39.18 3.13
149 150 8.980481 TCTTTTCTACAGAGTTGATTTTTCCT 57.020 30.769 0.00 0.00 0.00 3.36
150 151 9.408648 TCTTTTCTACAGAGTTGATTTTTCCTT 57.591 29.630 0.00 0.00 0.00 3.36
153 154 8.980481 TTCTACAGAGTTGATTTTTCCTTTCT 57.020 30.769 0.00 0.00 0.00 2.52
154 155 8.980481 TCTACAGAGTTGATTTTTCCTTTCTT 57.020 30.769 0.00 0.00 0.00 2.52
155 156 9.408648 TCTACAGAGTTGATTTTTCCTTTCTTT 57.591 29.630 0.00 0.00 0.00 2.52
156 157 9.670719 CTACAGAGTTGATTTTTCCTTTCTTTC 57.329 33.333 0.00 0.00 0.00 2.62
157 158 8.298729 ACAGAGTTGATTTTTCCTTTCTTTCT 57.701 30.769 0.00 0.00 0.00 2.52
158 159 8.753133 ACAGAGTTGATTTTTCCTTTCTTTCTT 58.247 29.630 0.00 0.00 0.00 2.52
159 160 9.028185 CAGAGTTGATTTTTCCTTTCTTTCTTG 57.972 33.333 0.00 0.00 0.00 3.02
160 161 8.200120 AGAGTTGATTTTTCCTTTCTTTCTTGG 58.800 33.333 0.00 0.00 0.00 3.61
161 162 7.851228 AGTTGATTTTTCCTTTCTTTCTTGGT 58.149 30.769 0.00 0.00 0.00 3.67
162 163 7.765819 AGTTGATTTTTCCTTTCTTTCTTGGTG 59.234 33.333 0.00 0.00 0.00 4.17
163 164 7.416964 TGATTTTTCCTTTCTTTCTTGGTGA 57.583 32.000 0.00 0.00 0.00 4.02
164 165 7.846066 TGATTTTTCCTTTCTTTCTTGGTGAA 58.154 30.769 0.00 0.00 0.00 3.18
165 166 7.763985 TGATTTTTCCTTTCTTTCTTGGTGAAC 59.236 33.333 0.00 0.00 33.88 3.18
166 167 6.597832 TTTTCCTTTCTTTCTTGGTGAACA 57.402 33.333 0.00 0.00 33.88 3.18
167 168 6.597832 TTTCCTTTCTTTCTTGGTGAACAA 57.402 33.333 0.00 0.00 37.55 2.83
168 169 6.790232 TTCCTTTCTTTCTTGGTGAACAAT 57.210 33.333 0.00 0.00 38.65 2.71
169 170 6.790232 TCCTTTCTTTCTTGGTGAACAATT 57.210 33.333 0.00 0.00 38.65 2.32
170 171 6.572519 TCCTTTCTTTCTTGGTGAACAATTG 58.427 36.000 3.24 3.24 38.65 2.32
171 172 5.234972 CCTTTCTTTCTTGGTGAACAATTGC 59.765 40.000 5.05 0.00 38.65 3.56
172 173 4.998671 TCTTTCTTGGTGAACAATTGCA 57.001 36.364 5.05 0.00 38.65 4.08
173 174 4.681744 TCTTTCTTGGTGAACAATTGCAC 58.318 39.130 5.05 6.51 38.65 4.57
174 175 4.159321 TCTTTCTTGGTGAACAATTGCACA 59.841 37.500 15.32 9.14 38.65 4.57
175 176 3.713858 TCTTGGTGAACAATTGCACAG 57.286 42.857 15.32 7.51 38.65 3.66
176 177 2.361757 TCTTGGTGAACAATTGCACAGG 59.638 45.455 15.32 5.32 38.65 4.00
177 178 1.039068 TGGTGAACAATTGCACAGGG 58.961 50.000 15.32 0.00 36.76 4.45
178 179 1.039856 GGTGAACAATTGCACAGGGT 58.960 50.000 15.32 0.00 36.76 4.34
179 180 1.000274 GGTGAACAATTGCACAGGGTC 60.000 52.381 15.32 0.00 36.76 4.46
180 181 0.950836 TGAACAATTGCACAGGGTCG 59.049 50.000 5.05 0.00 0.00 4.79
181 182 1.234821 GAACAATTGCACAGGGTCGA 58.765 50.000 5.05 0.00 0.00 4.20
182 183 1.197721 GAACAATTGCACAGGGTCGAG 59.802 52.381 5.05 0.00 0.00 4.04
183 184 0.108585 ACAATTGCACAGGGTCGAGT 59.891 50.000 5.05 0.00 0.00 4.18
184 185 0.518636 CAATTGCACAGGGTCGAGTG 59.481 55.000 0.00 0.00 38.74 3.51
185 186 0.396435 AATTGCACAGGGTCGAGTGA 59.604 50.000 6.71 0.00 37.97 3.41
186 187 0.036952 ATTGCACAGGGTCGAGTGAG 60.037 55.000 6.71 0.00 37.97 3.51
187 188 2.433318 GCACAGGGTCGAGTGAGC 60.433 66.667 6.71 1.94 41.93 4.26
188 189 2.126307 CACAGGGTCGAGTGAGCG 60.126 66.667 0.00 0.00 43.60 5.03
189 190 3.374402 ACAGGGTCGAGTGAGCGG 61.374 66.667 0.00 0.00 43.60 5.52
190 191 3.062466 CAGGGTCGAGTGAGCGGA 61.062 66.667 0.00 0.00 43.60 5.54
191 192 2.282958 AGGGTCGAGTGAGCGGAA 60.283 61.111 0.00 0.00 43.60 4.30
192 193 1.682684 AGGGTCGAGTGAGCGGAAT 60.683 57.895 0.00 0.00 43.60 3.01
193 194 1.519455 GGGTCGAGTGAGCGGAATG 60.519 63.158 0.00 0.00 43.60 2.67
194 195 1.519455 GGTCGAGTGAGCGGAATGG 60.519 63.158 0.00 0.00 32.15 3.16
195 196 1.511305 GTCGAGTGAGCGGAATGGA 59.489 57.895 0.00 0.00 0.00 3.41
196 197 0.108804 GTCGAGTGAGCGGAATGGAA 60.109 55.000 0.00 0.00 0.00 3.53
197 198 0.606096 TCGAGTGAGCGGAATGGAAA 59.394 50.000 0.00 0.00 0.00 3.13
198 199 1.207089 TCGAGTGAGCGGAATGGAAAT 59.793 47.619 0.00 0.00 0.00 2.17
199 200 1.328680 CGAGTGAGCGGAATGGAAATG 59.671 52.381 0.00 0.00 0.00 2.32
200 201 2.359900 GAGTGAGCGGAATGGAAATGT 58.640 47.619 0.00 0.00 0.00 2.71
201 202 2.086869 AGTGAGCGGAATGGAAATGTG 58.913 47.619 0.00 0.00 0.00 3.21
202 203 1.812571 GTGAGCGGAATGGAAATGTGT 59.187 47.619 0.00 0.00 0.00 3.72
203 204 2.228822 GTGAGCGGAATGGAAATGTGTT 59.771 45.455 0.00 0.00 0.00 3.32
204 205 3.438781 GTGAGCGGAATGGAAATGTGTTA 59.561 43.478 0.00 0.00 0.00 2.41
205 206 4.075682 TGAGCGGAATGGAAATGTGTTAA 58.924 39.130 0.00 0.00 0.00 2.01
206 207 4.083003 TGAGCGGAATGGAAATGTGTTAAC 60.083 41.667 0.00 0.00 0.00 2.01
207 208 3.119990 AGCGGAATGGAAATGTGTTAACG 60.120 43.478 0.26 0.00 0.00 3.18
208 209 3.120130 GCGGAATGGAAATGTGTTAACGA 60.120 43.478 0.26 0.00 0.00 3.85
209 210 4.438200 GCGGAATGGAAATGTGTTAACGAT 60.438 41.667 0.26 0.00 0.00 3.73
210 211 5.263185 CGGAATGGAAATGTGTTAACGATC 58.737 41.667 0.26 0.00 0.00 3.69
211 212 5.263185 GGAATGGAAATGTGTTAACGATCG 58.737 41.667 14.88 14.88 0.00 3.69
212 213 5.163794 GGAATGGAAATGTGTTAACGATCGT 60.164 40.000 16.60 16.60 0.00 3.73
213 214 4.655440 TGGAAATGTGTTAACGATCGTG 57.345 40.909 23.51 0.00 0.00 4.35
214 215 3.433957 TGGAAATGTGTTAACGATCGTGG 59.566 43.478 23.51 0.00 0.00 4.94
215 216 3.181514 GGAAATGTGTTAACGATCGTGGG 60.182 47.826 23.51 0.00 0.00 4.61
216 217 1.365699 ATGTGTTAACGATCGTGGGC 58.634 50.000 23.51 14.58 0.00 5.36
217 218 0.671163 TGTGTTAACGATCGTGGGCC 60.671 55.000 23.51 10.72 0.00 5.80
218 219 1.446445 TGTTAACGATCGTGGGCCG 60.446 57.895 23.51 0.00 38.13 6.13
232 233 3.434319 GCCGAGGCCACACACATG 61.434 66.667 5.01 0.00 34.56 3.21
233 234 3.434319 CCGAGGCCACACACATGC 61.434 66.667 5.01 0.00 0.00 4.06
234 235 3.434319 CGAGGCCACACACATGCC 61.434 66.667 5.01 0.00 45.70 4.40
237 238 4.060038 GGCCACACACATGCCAGC 62.060 66.667 0.00 0.00 44.70 4.85
238 239 4.060038 GCCACACACATGCCAGCC 62.060 66.667 0.00 0.00 0.00 4.85
239 240 3.376078 CCACACACATGCCAGCCC 61.376 66.667 0.00 0.00 0.00 5.19
240 241 2.598099 CACACACATGCCAGCCCA 60.598 61.111 0.00 0.00 0.00 5.36
241 242 2.282674 ACACACATGCCAGCCCAG 60.283 61.111 0.00 0.00 0.00 4.45
242 243 3.066190 CACACATGCCAGCCCAGG 61.066 66.667 0.00 0.00 0.00 4.45
243 244 3.259314 ACACATGCCAGCCCAGGA 61.259 61.111 0.00 0.00 0.00 3.86
244 245 2.439701 CACATGCCAGCCCAGGAG 60.440 66.667 0.00 0.00 0.00 3.69
245 246 2.611800 ACATGCCAGCCCAGGAGA 60.612 61.111 0.00 0.00 0.00 3.71
246 247 2.192443 CATGCCAGCCCAGGAGAG 59.808 66.667 0.00 0.00 0.00 3.20
247 248 2.041762 ATGCCAGCCCAGGAGAGA 59.958 61.111 0.00 0.00 0.00 3.10
248 249 2.071262 ATGCCAGCCCAGGAGAGAG 61.071 63.158 0.00 0.00 0.00 3.20
249 250 2.364842 GCCAGCCCAGGAGAGAGA 60.365 66.667 0.00 0.00 0.00 3.10
250 251 2.433994 GCCAGCCCAGGAGAGAGAG 61.434 68.421 0.00 0.00 0.00 3.20
251 252 1.309347 CCAGCCCAGGAGAGAGAGA 59.691 63.158 0.00 0.00 0.00 3.10
252 253 1.042559 CCAGCCCAGGAGAGAGAGAC 61.043 65.000 0.00 0.00 0.00 3.36
253 254 1.077068 AGCCCAGGAGAGAGAGACG 60.077 63.158 0.00 0.00 0.00 4.18
254 255 1.077357 GCCCAGGAGAGAGAGACGA 60.077 63.158 0.00 0.00 0.00 4.20
255 256 1.101049 GCCCAGGAGAGAGAGACGAG 61.101 65.000 0.00 0.00 0.00 4.18
256 257 0.544223 CCCAGGAGAGAGAGACGAGA 59.456 60.000 0.00 0.00 0.00 4.04
257 258 1.475034 CCCAGGAGAGAGAGACGAGAG 60.475 61.905 0.00 0.00 0.00 3.20
258 259 1.475034 CCAGGAGAGAGAGACGAGAGG 60.475 61.905 0.00 0.00 0.00 3.69
259 260 0.180406 AGGAGAGAGAGACGAGAGGC 59.820 60.000 0.00 0.00 42.06 4.70
272 273 3.641439 CGAGAGGCGTTTTGTATGAAG 57.359 47.619 0.00 0.00 34.64 3.02
273 274 2.993899 CGAGAGGCGTTTTGTATGAAGT 59.006 45.455 0.00 0.00 34.64 3.01
274 275 3.060895 CGAGAGGCGTTTTGTATGAAGTC 59.939 47.826 0.00 0.00 34.64 3.01
275 276 3.335579 AGAGGCGTTTTGTATGAAGTCC 58.664 45.455 0.00 0.00 0.00 3.85
276 277 3.071479 GAGGCGTTTTGTATGAAGTCCA 58.929 45.455 0.00 0.00 0.00 4.02
277 278 3.074412 AGGCGTTTTGTATGAAGTCCAG 58.926 45.455 0.00 0.00 0.00 3.86
278 279 2.414161 GGCGTTTTGTATGAAGTCCAGC 60.414 50.000 0.00 0.00 0.00 4.85
279 280 2.484264 GCGTTTTGTATGAAGTCCAGCT 59.516 45.455 0.00 0.00 0.00 4.24
280 281 3.058224 GCGTTTTGTATGAAGTCCAGCTT 60.058 43.478 0.00 0.00 40.76 3.74
290 291 4.810191 GAAGTCCAGCTTCCTCTCTAAA 57.190 45.455 0.00 0.00 45.95 1.85
291 292 5.153950 GAAGTCCAGCTTCCTCTCTAAAA 57.846 43.478 0.00 0.00 45.95 1.52
292 293 5.552178 GAAGTCCAGCTTCCTCTCTAAAAA 58.448 41.667 0.00 0.00 45.95 1.94
315 316 8.743085 AAAATATATATATGTGAGCCCAGCTG 57.257 34.615 6.78 6.78 39.88 4.24
316 317 2.486472 ATATATGTGAGCCCAGCTGC 57.514 50.000 8.66 0.00 39.88 5.25
317 318 1.427809 TATATGTGAGCCCAGCTGCT 58.572 50.000 8.66 2.43 46.37 4.24
323 324 3.412860 AGCCCAGCTGCTCAGAAT 58.587 55.556 8.66 0.00 36.75 2.40
324 325 1.077644 AGCCCAGCTGCTCAGAATG 60.078 57.895 8.66 0.00 36.75 2.67
325 326 2.772691 GCCCAGCTGCTCAGAATGC 61.773 63.158 8.66 0.00 34.76 3.56
326 327 1.378119 CCCAGCTGCTCAGAATGCA 60.378 57.895 8.66 0.00 38.81 3.96
327 328 0.752009 CCCAGCTGCTCAGAATGCAT 60.752 55.000 8.66 0.00 39.86 3.96
328 329 1.103803 CCAGCTGCTCAGAATGCATT 58.896 50.000 12.83 12.83 39.86 3.56
329 330 1.202302 CCAGCTGCTCAGAATGCATTG 60.202 52.381 18.59 4.04 39.86 2.82
330 331 1.472878 CAGCTGCTCAGAATGCATTGT 59.527 47.619 18.59 10.58 39.86 2.71
331 332 2.681344 CAGCTGCTCAGAATGCATTGTA 59.319 45.455 18.59 0.59 39.86 2.41
332 333 2.681848 AGCTGCTCAGAATGCATTGTAC 59.318 45.455 18.59 6.57 39.86 2.90
333 334 2.223433 GCTGCTCAGAATGCATTGTACC 60.223 50.000 18.59 1.75 39.86 3.34
334 335 2.357009 CTGCTCAGAATGCATTGTACCC 59.643 50.000 18.59 1.32 39.86 3.69
335 336 1.331756 GCTCAGAATGCATTGTACCCG 59.668 52.381 18.59 0.61 34.76 5.28
336 337 2.632377 CTCAGAATGCATTGTACCCGT 58.368 47.619 18.59 0.00 34.76 5.28
337 338 3.009723 CTCAGAATGCATTGTACCCGTT 58.990 45.455 18.59 0.00 34.76 4.44
338 339 3.417101 TCAGAATGCATTGTACCCGTTT 58.583 40.909 18.59 0.00 34.76 3.60
339 340 3.190327 TCAGAATGCATTGTACCCGTTTG 59.810 43.478 18.59 0.00 34.76 2.93
340 341 3.190327 CAGAATGCATTGTACCCGTTTGA 59.810 43.478 18.59 0.00 0.00 2.69
341 342 3.190535 AGAATGCATTGTACCCGTTTGAC 59.809 43.478 18.59 0.00 0.00 3.18
342 343 2.264005 TGCATTGTACCCGTTTGACT 57.736 45.000 0.00 0.00 0.00 3.41
343 344 2.577700 TGCATTGTACCCGTTTGACTT 58.422 42.857 0.00 0.00 0.00 3.01
344 345 2.292016 TGCATTGTACCCGTTTGACTTG 59.708 45.455 0.00 0.00 0.00 3.16
345 346 2.920647 GCATTGTACCCGTTTGACTTGC 60.921 50.000 0.00 0.00 0.00 4.01
346 347 2.335316 TTGTACCCGTTTGACTTGCT 57.665 45.000 0.00 0.00 0.00 3.91
349 350 1.193874 GTACCCGTTTGACTTGCTTCG 59.806 52.381 0.00 0.00 0.00 3.79
352 353 1.332375 CCCGTTTGACTTGCTTCGAAA 59.668 47.619 0.00 0.00 0.00 3.46
380 381 1.406539 CCATCCGCAGAAATGGAAAGG 59.593 52.381 0.00 0.00 41.23 3.11
381 382 1.406539 CATCCGCAGAAATGGAAAGGG 59.593 52.381 0.00 0.00 37.90 3.95
385 386 2.352715 CCGCAGAAATGGAAAGGGAAAC 60.353 50.000 0.00 0.00 0.00 2.78
420 421 2.426023 GTGGTGTGGTCCGCTCTT 59.574 61.111 3.62 0.00 35.37 2.85
486 491 1.586154 CTCCGCACCCAACCACAATC 61.586 60.000 0.00 0.00 0.00 2.67
553 574 1.222115 GGCGAAAATCTCCGGATCCG 61.222 60.000 27.65 27.65 39.44 4.18
579 600 3.000819 TCCGTTCCATCGCCACCT 61.001 61.111 0.00 0.00 0.00 4.00
589 610 3.636231 CGCCACCTTCTCCACCCA 61.636 66.667 0.00 0.00 0.00 4.51
612 633 3.629142 AGGGTTTAATTCCGAGGTGAG 57.371 47.619 0.00 0.00 0.00 3.51
617 638 2.622903 TAATTCCGAGGTGAGGCGCG 62.623 60.000 0.00 0.00 0.00 6.86
663 684 7.910441 TTTTTCCGTCCTAAAATAACGAGAT 57.090 32.000 0.00 0.00 38.65 2.75
664 685 7.910441 TTTTCCGTCCTAAAATAACGAGATT 57.090 32.000 0.00 0.00 38.65 2.40
665 686 7.910441 TTTCCGTCCTAAAATAACGAGATTT 57.090 32.000 0.00 0.00 38.65 2.17
666 687 7.910441 TTCCGTCCTAAAATAACGAGATTTT 57.090 32.000 13.71 13.71 41.00 1.82
667 688 7.298507 TCCGTCCTAAAATAACGAGATTTTG 57.701 36.000 16.85 9.92 38.98 2.44
668 689 6.875195 TCCGTCCTAAAATAACGAGATTTTGT 59.125 34.615 16.85 1.36 38.98 2.83
678 699 5.365403 AACGAGATTTTGTCGCCATTTTA 57.635 34.783 0.00 0.00 41.26 1.52
692 735 5.355910 TCGCCATTTTATGTTCTAGGGTTTC 59.644 40.000 0.00 0.00 0.00 2.78
707 750 1.669760 TTTCGATCCACCACCGCAC 60.670 57.895 0.00 0.00 0.00 5.34
728 771 5.353123 GCACCCGTCTTTTATTTCATCTGTA 59.647 40.000 0.00 0.00 0.00 2.74
748 791 4.994852 TGTATTCGGTTTCTTGTTCTGAGG 59.005 41.667 0.00 0.00 0.00 3.86
825 868 1.419374 GTGAATCGACAGCGTCACTT 58.581 50.000 8.91 2.33 39.22 3.16
837 880 0.934496 CGTCACTTTCGCACTTTCCA 59.066 50.000 0.00 0.00 0.00 3.53
839 882 0.944386 TCACTTTCGCACTTTCCAGC 59.056 50.000 0.00 0.00 0.00 4.85
852 941 4.394300 CACTTTCCAGCCTAGATTCAGTTG 59.606 45.833 0.00 0.00 0.00 3.16
853 942 4.287067 ACTTTCCAGCCTAGATTCAGTTGA 59.713 41.667 0.00 0.00 0.00 3.18
904 995 2.627945 TGAAATACCGCTGGTGCTTAG 58.372 47.619 10.01 0.00 36.19 2.18
927 1018 2.427410 CGCGTGCTTGCTTGGTTC 60.427 61.111 0.00 0.00 0.00 3.62
928 1019 2.721231 GCGTGCTTGCTTGGTTCA 59.279 55.556 0.00 0.00 0.00 3.18
930 1021 1.283793 CGTGCTTGCTTGGTTCAGG 59.716 57.895 0.00 0.00 0.00 3.86
931 1022 1.662044 GTGCTTGCTTGGTTCAGGG 59.338 57.895 0.00 0.00 0.00 4.45
933 1024 1.228552 GCTTGCTTGGTTCAGGGGA 60.229 57.895 0.00 0.00 0.00 4.81
972 1082 1.429463 CGTAAAGACAGGTCTGTGGC 58.571 55.000 8.49 0.00 45.05 5.01
1026 1136 2.358737 GGAGGCAACACGGTGAGG 60.359 66.667 16.29 7.26 41.41 3.86
1052 1162 6.774656 CCAAGGATCCAACTCTGCTATTTATT 59.225 38.462 15.82 0.00 0.00 1.40
1053 1163 7.939039 CCAAGGATCCAACTCTGCTATTTATTA 59.061 37.037 15.82 0.00 0.00 0.98
1054 1164 9.512588 CAAGGATCCAACTCTGCTATTTATTAT 57.487 33.333 15.82 0.00 0.00 1.28
1055 1165 9.512588 AAGGATCCAACTCTGCTATTTATTATG 57.487 33.333 15.82 0.00 0.00 1.90
1057 1167 9.944376 GGATCCAACTCTGCTATTTATTATGTA 57.056 33.333 6.95 0.00 0.00 2.29
1060 1170 9.982651 TCCAACTCTGCTATTTATTATGTAGTC 57.017 33.333 0.00 0.00 0.00 2.59
1061 1171 9.988815 CCAACTCTGCTATTTATTATGTAGTCT 57.011 33.333 0.00 0.00 0.00 3.24
1183 1309 8.812329 GCTCTATGAGTTCAGTAAGTTGTAATG 58.188 37.037 0.00 0.00 31.39 1.90
1184 1310 9.862371 CTCTATGAGTTCAGTAAGTTGTAATGT 57.138 33.333 0.00 0.00 0.00 2.71
1189 1316 5.176958 AGTTCAGTAAGTTGTAATGTGCGTC 59.823 40.000 0.00 0.00 0.00 5.19
1201 1328 4.900635 AATGTGCGTCCCATCTAAATTC 57.099 40.909 0.00 0.00 0.00 2.17
1205 1332 3.627577 GTGCGTCCCATCTAAATTCATGT 59.372 43.478 0.00 0.00 0.00 3.21
1213 1340 7.756722 GTCCCATCTAAATTCATGTGTTCTTTG 59.243 37.037 0.00 0.00 0.00 2.77
1215 1342 8.090214 CCCATCTAAATTCATGTGTTCTTTGTT 58.910 33.333 0.00 0.00 0.00 2.83
1216 1343 8.918658 CCATCTAAATTCATGTGTTCTTTGTTG 58.081 33.333 0.00 0.00 0.00 3.33
1219 1346 9.299963 TCTAAATTCATGTGTTCTTTGTTGTTG 57.700 29.630 0.00 0.00 0.00 3.33
1220 1347 5.971895 ATTCATGTGTTCTTTGTTGTTGC 57.028 34.783 0.00 0.00 0.00 4.17
1221 1348 4.446994 TCATGTGTTCTTTGTTGTTGCA 57.553 36.364 0.00 0.00 0.00 4.08
1222 1349 4.814147 TCATGTGTTCTTTGTTGTTGCAA 58.186 34.783 0.00 0.00 0.00 4.08
1235 1362 9.554724 CTTTGTTGTTGCAAATAATATAGTCGT 57.445 29.630 0.00 0.00 37.66 4.34
1236 1363 9.549509 TTTGTTGTTGCAAATAATATAGTCGTC 57.450 29.630 0.00 0.00 33.91 4.20
1255 1386 5.347907 GTCGTCGAGGTTTTATGAATTCAGT 59.652 40.000 14.54 5.12 0.00 3.41
1278 1409 1.738700 GCCTGCTACTCTGTCTGAAGC 60.739 57.143 0.00 0.00 0.00 3.86
1293 1424 4.025647 GTCTGAAGCACGGCTCATATTTAC 60.026 45.833 0.00 0.00 38.25 2.01
1294 1425 4.122776 CTGAAGCACGGCTCATATTTACT 58.877 43.478 0.00 0.00 38.25 2.24
1295 1426 3.871006 TGAAGCACGGCTCATATTTACTG 59.129 43.478 0.00 0.00 38.25 2.74
1310 1554 5.964958 ATTTACTGTTACTGCTGCATTGT 57.035 34.783 1.31 0.61 0.00 2.71
1311 1555 5.356882 TTTACTGTTACTGCTGCATTGTC 57.643 39.130 1.31 0.00 0.00 3.18
1321 1565 2.026915 TGCTGCATTGTCACCTACATCT 60.027 45.455 0.00 0.00 38.10 2.90
1386 1745 8.993121 ACAAACATATTTCGTCAGGATATGATC 58.007 33.333 8.96 0.00 40.92 2.92
1395 1754 4.855937 CGTCAGGATATGATCATGTTCTCG 59.144 45.833 18.72 12.09 41.49 4.04
1415 1774 3.633235 CGTAAGAATCAGACCGAGGATG 58.367 50.000 0.00 0.00 43.02 3.51
1464 1823 1.067706 CCATTCAACGATGCAGCCAAA 60.068 47.619 0.00 0.00 0.00 3.28
1486 1845 3.587797 TCTTCAGTCGAATTTACGCCT 57.412 42.857 0.00 0.00 0.00 5.52
1487 1846 3.508762 TCTTCAGTCGAATTTACGCCTC 58.491 45.455 0.00 0.00 0.00 4.70
1492 1851 0.527113 TCGAATTTACGCCTCGGTGA 59.473 50.000 3.09 0.00 33.44 4.02
1512 1875 5.181245 GGTGAAGTTTGCTTACATTGAGCTA 59.819 40.000 0.00 0.00 40.75 3.32
1519 1882 3.450817 TGCTTACATTGAGCTACTGCCTA 59.549 43.478 0.00 0.00 40.75 3.93
1526 1889 4.920640 TTGAGCTACTGCCTACTGATAC 57.079 45.455 0.00 0.00 40.80 2.24
1642 2007 2.317609 GCACACGGTTCAGACGCAT 61.318 57.895 0.00 0.00 34.00 4.73
1657 2022 0.250424 CGCATGGATATGGACTGGCA 60.250 55.000 0.00 0.00 34.79 4.92
1669 2034 0.040958 GACTGGCAAGAAAGCACACG 60.041 55.000 0.00 0.00 35.83 4.49
1675 2040 2.420022 GGCAAGAAAGCACACGTATGAT 59.580 45.455 0.00 0.00 35.83 2.45
1696 2061 4.467198 TTGGGTCGTTCTTATTCTCCTC 57.533 45.455 0.00 0.00 0.00 3.71
1703 2068 1.065928 CTTATTCTCCTCGCCGCGT 59.934 57.895 13.39 0.00 0.00 6.01
1795 2160 0.683412 ACCCGGTGAAACAGAGTACC 59.317 55.000 0.00 0.00 39.98 3.34
1835 2200 3.005472 TCCTGTACGTTTCTGAACCTCTG 59.995 47.826 0.00 0.00 31.93 3.35
1836 2201 3.243771 CCTGTACGTTTCTGAACCTCTGT 60.244 47.826 0.00 0.00 31.93 3.41
1854 2219 4.439057 TCTGTAATTTCATACCCTGACGC 58.561 43.478 0.00 0.00 32.17 5.19
1870 2235 2.202566 GACGCAAGCTTATACTCACCC 58.797 52.381 0.00 0.00 45.62 4.61
1871 2236 1.831736 ACGCAAGCTTATACTCACCCT 59.168 47.619 0.00 0.00 45.62 4.34
1872 2237 2.236395 ACGCAAGCTTATACTCACCCTT 59.764 45.455 0.00 0.00 45.62 3.95
1880 2245 5.961421 AGCTTATACTCACCCTTCTTCTCTT 59.039 40.000 0.00 0.00 0.00 2.85
1993 2358 4.122776 GTCTATGATCTTCACCACGCAAT 58.877 43.478 0.00 0.00 0.00 3.56
2089 2456 0.448990 CTGGGTGACACATTCATGCG 59.551 55.000 8.08 0.00 36.32 4.73
2107 2474 1.769733 CGTGGAAAATGCAGGTGTTG 58.230 50.000 0.00 0.00 0.00 3.33
2250 2617 5.008415 ACTTCTGTATGTCCGTATAGTTCCG 59.992 44.000 0.00 0.00 0.00 4.30
2256 2623 4.882671 TGTCCGTATAGTTCCGTACTTC 57.117 45.455 0.00 0.00 38.33 3.01
2264 2631 2.401351 AGTTCCGTACTTCAAAGCGTC 58.599 47.619 0.00 0.00 31.29 5.19
2478 2845 4.617995 CGATGTTGATGGATAGAGCTCTCC 60.618 50.000 22.17 17.28 0.00 3.71
2508 2875 3.200294 TGTCAACAATTGCTGCATACG 57.800 42.857 1.84 0.00 0.00 3.06
2590 2961 6.047511 ACTTGATAGTCTGGATATCCATGC 57.952 41.667 24.73 18.79 46.46 4.06
2591 2962 5.784390 ACTTGATAGTCTGGATATCCATGCT 59.216 40.000 24.73 23.88 46.46 3.79
2592 2963 6.271857 ACTTGATAGTCTGGATATCCATGCTT 59.728 38.462 24.73 12.90 46.46 3.91
2669 3047 7.508977 ACTTCCATTGTTTCCTCCAAAATAGAA 59.491 33.333 0.00 0.00 0.00 2.10
2694 3072 1.200474 CTACGGTCATACTGCGTGCG 61.200 60.000 0.00 0.00 0.00 5.34
2695 3073 1.925415 TACGGTCATACTGCGTGCGT 61.925 55.000 0.00 0.00 0.00 5.24
2922 3300 1.102978 GCGGCCTGATTGGTTTGTAT 58.897 50.000 0.00 0.00 38.35 2.29
2937 3315 4.510571 GTTTGTATTTCTTCCCCGCTCTA 58.489 43.478 0.00 0.00 0.00 2.43
3075 3453 4.952957 TCAAGGTTGTTCAATCTCCACAAA 59.047 37.500 0.00 0.00 32.32 2.83
3389 3768 2.017049 GGAACCGACTAGCGTACCTTA 58.983 52.381 5.97 0.00 38.67 2.69
3451 3830 5.046520 ACCAAGCAAGTACTAGGAGTTTAGG 60.047 44.000 0.00 0.00 0.00 2.69
3459 3838 9.411189 CAAGTACTAGGAGTTTAGGACTAGATT 57.589 37.037 0.00 0.00 42.69 2.40
3470 3849 8.200792 AGTTTAGGACTAGATTTGTGCTATCTG 58.799 37.037 0.00 0.00 37.97 2.90
3509 3888 5.578776 CCTGTTCCTCTTGTGTACAAAAAC 58.421 41.667 0.00 0.00 35.15 2.43
3510 3889 5.357032 CCTGTTCCTCTTGTGTACAAAAACT 59.643 40.000 0.00 0.00 35.15 2.66
3521 3900 3.739300 TGTACAAAAACTACTCGCTCAGC 59.261 43.478 0.00 0.00 0.00 4.26
3651 4032 4.438744 GCTGTTAAACAAGCACAACTGAGT 60.439 41.667 2.11 0.00 0.00 3.41
3664 4045 2.209838 ACTGAGTGGCGATAATGACG 57.790 50.000 0.00 0.00 0.00 4.35
3665 4046 1.202417 ACTGAGTGGCGATAATGACGG 60.202 52.381 0.00 0.00 0.00 4.79
3700 4081 3.065925 GCATTGAACATTCTCTACCAGGC 59.934 47.826 0.00 0.00 0.00 4.85
3832 4217 2.915604 TCCAAGCTGGGAAGAAGAGATT 59.084 45.455 7.63 0.00 38.32 2.40
4181 4597 4.466828 CAGTGAAAACAACTAGATTGCGG 58.533 43.478 0.00 0.00 42.62 5.69
4237 4657 2.650116 AAGAGCGCAGACCACGGAT 61.650 57.895 11.47 0.00 0.00 4.18
4238 4658 2.564553 AAGAGCGCAGACCACGGATC 62.565 60.000 11.47 0.00 0.00 3.36
4239 4659 4.498520 AGCGCAGACCACGGATCG 62.499 66.667 11.47 0.00 0.00 3.69
4241 4661 3.822192 CGCAGACCACGGATCGGA 61.822 66.667 7.35 0.00 0.00 4.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.104776 CAAAATATGTTAGCGGCACAAGG 58.895 43.478 1.45 0.00 0.00 3.61
1 2 3.547468 GCAAAATATGTTAGCGGCACAAG 59.453 43.478 1.45 0.00 0.00 3.16
2 3 3.057245 TGCAAAATATGTTAGCGGCACAA 60.057 39.130 1.45 0.00 0.00 3.33
3 4 2.489722 TGCAAAATATGTTAGCGGCACA 59.510 40.909 1.45 0.00 0.00 4.57
4 5 3.143807 TGCAAAATATGTTAGCGGCAC 57.856 42.857 1.45 0.00 0.00 5.01
5 6 3.857549 TTGCAAAATATGTTAGCGGCA 57.142 38.095 1.45 0.00 0.00 5.69
6 7 3.001168 CGTTTGCAAAATATGTTAGCGGC 60.001 43.478 14.67 0.00 0.00 6.53
7 8 4.030083 CACGTTTGCAAAATATGTTAGCGG 59.970 41.667 14.67 1.10 0.00 5.52
8 9 4.615121 ACACGTTTGCAAAATATGTTAGCG 59.385 37.500 14.67 12.04 0.00 4.26
9 10 7.600039 CATACACGTTTGCAAAATATGTTAGC 58.400 34.615 22.12 5.37 0.00 3.09
10 11 7.272299 TGCATACACGTTTGCAAAATATGTTAG 59.728 33.333 22.12 17.16 42.81 2.34
11 12 7.084486 TGCATACACGTTTGCAAAATATGTTA 58.916 30.769 22.12 14.08 42.81 2.41
12 13 5.923114 TGCATACACGTTTGCAAAATATGTT 59.077 32.000 22.12 11.93 42.81 2.71
13 14 5.465051 TGCATACACGTTTGCAAAATATGT 58.535 33.333 14.67 18.91 42.81 2.29
22 23 2.627863 TTCCATGCATACACGTTTGC 57.372 45.000 0.00 5.76 37.90 3.68
23 24 5.404968 ACAAAATTCCATGCATACACGTTTG 59.595 36.000 16.61 16.61 0.00 2.93
24 25 5.537188 ACAAAATTCCATGCATACACGTTT 58.463 33.333 0.00 0.00 0.00 3.60
25 26 5.132897 ACAAAATTCCATGCATACACGTT 57.867 34.783 0.00 0.00 0.00 3.99
26 27 4.782019 ACAAAATTCCATGCATACACGT 57.218 36.364 0.00 0.00 0.00 4.49
27 28 6.145209 TCAAAACAAAATTCCATGCATACACG 59.855 34.615 0.00 0.00 0.00 4.49
28 29 7.418840 TCAAAACAAAATTCCATGCATACAC 57.581 32.000 0.00 0.00 0.00 2.90
29 30 8.341173 GTTTCAAAACAAAATTCCATGCATACA 58.659 29.630 0.00 0.00 38.74 2.29
30 31 8.558700 AGTTTCAAAACAAAATTCCATGCATAC 58.441 29.630 0.00 0.00 41.30 2.39
31 32 8.674263 AGTTTCAAAACAAAATTCCATGCATA 57.326 26.923 0.00 0.00 41.30 3.14
32 33 7.571080 AGTTTCAAAACAAAATTCCATGCAT 57.429 28.000 8.23 0.00 41.30 3.96
33 34 6.998968 AGTTTCAAAACAAAATTCCATGCA 57.001 29.167 8.23 0.00 41.30 3.96
34 35 7.967303 TGAAAGTTTCAAAACAAAATTCCATGC 59.033 29.630 15.92 0.00 41.30 4.06
35 36 9.837525 TTGAAAGTTTCAAAACAAAATTCCATG 57.162 25.926 25.15 0.00 45.94 3.66
50 51 8.165428 CACGCTTTAAAATGTTTGAAAGTTTCA 58.835 29.630 14.35 14.35 39.68 2.69
51 52 8.166066 ACACGCTTTAAAATGTTTGAAAGTTTC 58.834 29.630 8.75 8.75 39.68 2.78
52 53 8.024146 ACACGCTTTAAAATGTTTGAAAGTTT 57.976 26.923 13.99 0.00 39.68 2.66
53 54 7.589574 ACACGCTTTAAAATGTTTGAAAGTT 57.410 28.000 13.99 2.98 39.68 2.66
54 55 7.589574 AACACGCTTTAAAATGTTTGAAAGT 57.410 28.000 13.99 0.00 39.68 2.66
55 56 9.959775 TTTAACACGCTTTAAAATGTTTGAAAG 57.040 25.926 14.08 9.90 40.22 2.62
88 89 5.420409 ACACATAAACCCGCTTTTGAAAAA 58.580 33.333 0.00 0.00 0.00 1.94
89 90 5.012328 ACACATAAACCCGCTTTTGAAAA 57.988 34.783 0.00 0.00 0.00 2.29
90 91 4.657436 ACACATAAACCCGCTTTTGAAA 57.343 36.364 0.00 0.00 0.00 2.69
91 92 4.023021 GGTACACATAAACCCGCTTTTGAA 60.023 41.667 0.00 0.00 0.00 2.69
92 93 3.502979 GGTACACATAAACCCGCTTTTGA 59.497 43.478 0.00 0.00 0.00 2.69
93 94 3.366577 GGGTACACATAAACCCGCTTTTG 60.367 47.826 0.00 0.00 45.73 2.44
94 95 2.821378 GGGTACACATAAACCCGCTTTT 59.179 45.455 0.00 0.00 45.73 2.27
95 96 2.439409 GGGTACACATAAACCCGCTTT 58.561 47.619 0.00 0.00 45.73 3.51
96 97 2.118313 GGGTACACATAAACCCGCTT 57.882 50.000 0.00 0.00 45.73 4.68
97 98 3.867549 GGGTACACATAAACCCGCT 57.132 52.632 0.00 0.00 45.73 5.52
101 102 2.026915 AGAACCCGGGTACACATAAACC 60.027 50.000 30.52 6.02 34.85 3.27
102 103 3.055602 AGAGAACCCGGGTACACATAAAC 60.056 47.826 30.52 10.80 0.00 2.01
103 104 3.175594 AGAGAACCCGGGTACACATAAA 58.824 45.455 30.52 0.00 0.00 1.40
104 105 2.762327 GAGAGAACCCGGGTACACATAA 59.238 50.000 30.52 0.00 0.00 1.90
105 106 2.024655 AGAGAGAACCCGGGTACACATA 60.025 50.000 30.52 0.00 0.00 2.29
106 107 1.192428 GAGAGAACCCGGGTACACAT 58.808 55.000 30.52 11.47 0.00 3.21
107 108 0.113776 AGAGAGAACCCGGGTACACA 59.886 55.000 30.52 0.00 0.00 3.72
108 109 1.264295 AAGAGAGAACCCGGGTACAC 58.736 55.000 30.52 21.04 0.00 2.90
109 110 2.019807 AAAGAGAGAACCCGGGTACA 57.980 50.000 30.52 0.00 0.00 2.90
110 111 2.566279 AGAAAAGAGAGAACCCGGGTAC 59.434 50.000 30.52 21.04 0.00 3.34
111 112 2.898662 AGAAAAGAGAGAACCCGGGTA 58.101 47.619 30.52 0.00 0.00 3.69
112 113 1.730851 AGAAAAGAGAGAACCCGGGT 58.269 50.000 24.16 24.16 0.00 5.28
113 114 2.565834 TGTAGAAAAGAGAGAACCCGGG 59.434 50.000 22.25 22.25 0.00 5.73
114 115 3.510360 TCTGTAGAAAAGAGAGAACCCGG 59.490 47.826 0.00 0.00 0.00 5.73
115 116 4.218852 ACTCTGTAGAAAAGAGAGAACCCG 59.781 45.833 7.42 0.00 46.29 5.28
116 117 5.731957 ACTCTGTAGAAAAGAGAGAACCC 57.268 43.478 7.42 0.00 46.29 4.11
117 118 6.750148 TCAACTCTGTAGAAAAGAGAGAACC 58.250 40.000 7.42 0.00 46.29 3.62
118 119 8.825667 AATCAACTCTGTAGAAAAGAGAGAAC 57.174 34.615 7.42 0.00 46.29 3.01
119 120 9.838339 AAAATCAACTCTGTAGAAAAGAGAGAA 57.162 29.630 7.42 0.00 46.29 2.87
120 121 9.838339 AAAAATCAACTCTGTAGAAAAGAGAGA 57.162 29.630 7.42 5.42 46.29 3.10
122 123 9.057089 GGAAAAATCAACTCTGTAGAAAAGAGA 57.943 33.333 7.42 0.00 43.27 3.10
123 124 9.061435 AGGAAAAATCAACTCTGTAGAAAAGAG 57.939 33.333 0.00 0.00 45.57 2.85
124 125 8.980481 AGGAAAAATCAACTCTGTAGAAAAGA 57.020 30.769 0.00 0.00 0.00 2.52
127 128 9.408648 AGAAAGGAAAAATCAACTCTGTAGAAA 57.591 29.630 0.00 0.00 0.00 2.52
128 129 8.980481 AGAAAGGAAAAATCAACTCTGTAGAA 57.020 30.769 0.00 0.00 0.00 2.10
129 130 8.980481 AAGAAAGGAAAAATCAACTCTGTAGA 57.020 30.769 0.00 0.00 0.00 2.59
130 131 9.670719 GAAAGAAAGGAAAAATCAACTCTGTAG 57.329 33.333 0.00 0.00 0.00 2.74
131 132 9.408648 AGAAAGAAAGGAAAAATCAACTCTGTA 57.591 29.630 0.00 0.00 0.00 2.74
132 133 8.298729 AGAAAGAAAGGAAAAATCAACTCTGT 57.701 30.769 0.00 0.00 0.00 3.41
133 134 9.028185 CAAGAAAGAAAGGAAAAATCAACTCTG 57.972 33.333 0.00 0.00 0.00 3.35
134 135 8.200120 CCAAGAAAGAAAGGAAAAATCAACTCT 58.800 33.333 0.00 0.00 0.00 3.24
135 136 7.981789 ACCAAGAAAGAAAGGAAAAATCAACTC 59.018 33.333 0.00 0.00 0.00 3.01
136 137 7.765819 CACCAAGAAAGAAAGGAAAAATCAACT 59.234 33.333 0.00 0.00 0.00 3.16
137 138 7.763985 TCACCAAGAAAGAAAGGAAAAATCAAC 59.236 33.333 0.00 0.00 0.00 3.18
138 139 7.846066 TCACCAAGAAAGAAAGGAAAAATCAA 58.154 30.769 0.00 0.00 0.00 2.57
139 140 7.416964 TCACCAAGAAAGAAAGGAAAAATCA 57.583 32.000 0.00 0.00 0.00 2.57
140 141 7.763985 TGTTCACCAAGAAAGAAAGGAAAAATC 59.236 33.333 0.00 0.00 38.13 2.17
141 142 7.619965 TGTTCACCAAGAAAGAAAGGAAAAAT 58.380 30.769 0.00 0.00 38.13 1.82
142 143 6.998802 TGTTCACCAAGAAAGAAAGGAAAAA 58.001 32.000 0.00 0.00 38.13 1.94
143 144 6.597832 TGTTCACCAAGAAAGAAAGGAAAA 57.402 33.333 0.00 0.00 38.13 2.29
144 145 6.597832 TTGTTCACCAAGAAAGAAAGGAAA 57.402 33.333 0.00 0.00 38.13 3.13
145 146 6.790232 ATTGTTCACCAAGAAAGAAAGGAA 57.210 33.333 0.00 0.00 38.13 3.36
146 147 6.572519 CAATTGTTCACCAAGAAAGAAAGGA 58.427 36.000 0.00 0.00 38.13 3.36
147 148 5.234972 GCAATTGTTCACCAAGAAAGAAAGG 59.765 40.000 7.40 0.00 38.13 3.11
148 149 5.811613 TGCAATTGTTCACCAAGAAAGAAAG 59.188 36.000 7.40 0.00 38.13 2.62
149 150 5.580297 GTGCAATTGTTCACCAAGAAAGAAA 59.420 36.000 7.40 0.00 38.13 2.52
150 151 5.108517 GTGCAATTGTTCACCAAGAAAGAA 58.891 37.500 7.40 0.00 38.13 2.52
151 152 4.159321 TGTGCAATTGTTCACCAAGAAAGA 59.841 37.500 7.40 0.00 38.13 2.52
152 153 4.431809 TGTGCAATTGTTCACCAAGAAAG 58.568 39.130 7.40 0.00 38.13 2.62
153 154 4.431809 CTGTGCAATTGTTCACCAAGAAA 58.568 39.130 7.40 0.00 38.13 2.52
154 155 3.181477 CCTGTGCAATTGTTCACCAAGAA 60.181 43.478 7.40 0.00 36.25 2.52
155 156 2.361757 CCTGTGCAATTGTTCACCAAGA 59.638 45.455 7.40 0.00 36.25 3.02
156 157 2.546373 CCCTGTGCAATTGTTCACCAAG 60.546 50.000 7.40 2.62 36.25 3.61
157 158 1.411977 CCCTGTGCAATTGTTCACCAA 59.588 47.619 7.40 0.00 37.49 3.67
158 159 1.039068 CCCTGTGCAATTGTTCACCA 58.961 50.000 7.40 0.00 32.51 4.17
159 160 1.000274 GACCCTGTGCAATTGTTCACC 60.000 52.381 7.40 0.00 32.51 4.02
160 161 1.334960 CGACCCTGTGCAATTGTTCAC 60.335 52.381 7.40 8.17 0.00 3.18
161 162 0.950836 CGACCCTGTGCAATTGTTCA 59.049 50.000 7.40 5.99 0.00 3.18
162 163 1.197721 CTCGACCCTGTGCAATTGTTC 59.802 52.381 7.40 1.40 0.00 3.18
163 164 1.238439 CTCGACCCTGTGCAATTGTT 58.762 50.000 7.40 0.00 0.00 2.83
164 165 0.108585 ACTCGACCCTGTGCAATTGT 59.891 50.000 7.40 0.00 0.00 2.71
165 166 0.518636 CACTCGACCCTGTGCAATTG 59.481 55.000 0.00 0.00 0.00 2.32
166 167 0.396435 TCACTCGACCCTGTGCAATT 59.604 50.000 0.00 0.00 34.49 2.32
167 168 0.036952 CTCACTCGACCCTGTGCAAT 60.037 55.000 0.00 0.00 34.49 3.56
168 169 1.367471 CTCACTCGACCCTGTGCAA 59.633 57.895 0.00 0.00 34.49 4.08
169 170 3.051210 CTCACTCGACCCTGTGCA 58.949 61.111 0.00 0.00 34.49 4.57
170 171 2.433318 GCTCACTCGACCCTGTGC 60.433 66.667 0.00 0.00 34.49 4.57
171 172 2.126307 CGCTCACTCGACCCTGTG 60.126 66.667 0.00 0.00 35.68 3.66
172 173 3.374402 CCGCTCACTCGACCCTGT 61.374 66.667 0.00 0.00 0.00 4.00
173 174 1.949847 ATTCCGCTCACTCGACCCTG 61.950 60.000 0.00 0.00 0.00 4.45
174 175 1.682684 ATTCCGCTCACTCGACCCT 60.683 57.895 0.00 0.00 0.00 4.34
175 176 1.519455 CATTCCGCTCACTCGACCC 60.519 63.158 0.00 0.00 0.00 4.46
176 177 1.519455 CCATTCCGCTCACTCGACC 60.519 63.158 0.00 0.00 0.00 4.79
177 178 0.108804 TTCCATTCCGCTCACTCGAC 60.109 55.000 0.00 0.00 0.00 4.20
178 179 0.606096 TTTCCATTCCGCTCACTCGA 59.394 50.000 0.00 0.00 0.00 4.04
179 180 1.328680 CATTTCCATTCCGCTCACTCG 59.671 52.381 0.00 0.00 0.00 4.18
180 181 2.096496 CACATTTCCATTCCGCTCACTC 59.904 50.000 0.00 0.00 0.00 3.51
181 182 2.086869 CACATTTCCATTCCGCTCACT 58.913 47.619 0.00 0.00 0.00 3.41
182 183 1.812571 ACACATTTCCATTCCGCTCAC 59.187 47.619 0.00 0.00 0.00 3.51
183 184 2.198827 ACACATTTCCATTCCGCTCA 57.801 45.000 0.00 0.00 0.00 4.26
184 185 4.412207 GTTAACACATTTCCATTCCGCTC 58.588 43.478 0.00 0.00 0.00 5.03
185 186 3.119990 CGTTAACACATTTCCATTCCGCT 60.120 43.478 6.39 0.00 0.00 5.52
186 187 3.120130 TCGTTAACACATTTCCATTCCGC 60.120 43.478 6.39 0.00 0.00 5.54
187 188 4.671880 TCGTTAACACATTTCCATTCCG 57.328 40.909 6.39 0.00 0.00 4.30
188 189 5.163794 ACGATCGTTAACACATTTCCATTCC 60.164 40.000 16.60 0.00 0.00 3.01
189 190 5.732647 CACGATCGTTAACACATTTCCATTC 59.267 40.000 20.14 0.00 0.00 2.67
190 191 5.391523 CCACGATCGTTAACACATTTCCATT 60.392 40.000 20.14 0.00 0.00 3.16
191 192 4.094294 CCACGATCGTTAACACATTTCCAT 59.906 41.667 20.14 0.00 0.00 3.41
192 193 3.433957 CCACGATCGTTAACACATTTCCA 59.566 43.478 20.14 0.00 0.00 3.53
193 194 3.181514 CCCACGATCGTTAACACATTTCC 60.182 47.826 20.14 0.00 0.00 3.13
194 195 3.726782 GCCCACGATCGTTAACACATTTC 60.727 47.826 20.14 0.00 0.00 2.17
195 196 2.160813 GCCCACGATCGTTAACACATTT 59.839 45.455 20.14 0.00 0.00 2.32
196 197 1.735571 GCCCACGATCGTTAACACATT 59.264 47.619 20.14 0.00 0.00 2.71
197 198 1.365699 GCCCACGATCGTTAACACAT 58.634 50.000 20.14 0.00 0.00 3.21
198 199 0.671163 GGCCCACGATCGTTAACACA 60.671 55.000 20.14 0.00 0.00 3.72
199 200 2.084013 GGCCCACGATCGTTAACAC 58.916 57.895 20.14 6.50 0.00 3.32
200 201 4.602159 GGCCCACGATCGTTAACA 57.398 55.556 20.14 0.00 0.00 2.41
215 216 3.434319 CATGTGTGTGGCCTCGGC 61.434 66.667 3.32 0.00 41.06 5.54
216 217 3.434319 GCATGTGTGTGGCCTCGG 61.434 66.667 3.32 0.00 0.00 4.63
217 218 3.434319 GGCATGTGTGTGGCCTCG 61.434 66.667 3.32 0.00 44.32 4.63
221 222 4.060038 GGCTGGCATGTGTGTGGC 62.060 66.667 0.00 0.00 44.24 5.01
222 223 3.376078 GGGCTGGCATGTGTGTGG 61.376 66.667 2.88 0.00 0.00 4.17
223 224 2.598099 TGGGCTGGCATGTGTGTG 60.598 61.111 2.88 0.00 0.00 3.82
224 225 2.282674 CTGGGCTGGCATGTGTGT 60.283 61.111 2.88 0.00 0.00 3.72
225 226 3.066190 CCTGGGCTGGCATGTGTG 61.066 66.667 2.88 0.00 0.00 3.82
226 227 3.259314 TCCTGGGCTGGCATGTGT 61.259 61.111 2.88 0.00 0.00 3.72
227 228 2.439701 CTCCTGGGCTGGCATGTG 60.440 66.667 2.88 0.00 0.00 3.21
228 229 2.611800 TCTCCTGGGCTGGCATGT 60.612 61.111 2.88 0.00 0.00 3.21
229 230 2.192443 CTCTCCTGGGCTGGCATG 59.808 66.667 2.88 0.00 0.00 4.06
230 231 2.041762 TCTCTCCTGGGCTGGCAT 59.958 61.111 2.88 0.00 0.00 4.40
231 232 2.686470 CTCTCTCCTGGGCTGGCA 60.686 66.667 2.88 0.00 0.00 4.92
232 233 2.364842 TCTCTCTCCTGGGCTGGC 60.365 66.667 0.00 0.00 0.00 4.85
233 234 1.042559 GTCTCTCTCTCCTGGGCTGG 61.043 65.000 0.00 0.00 0.00 4.85
234 235 1.383456 CGTCTCTCTCTCCTGGGCTG 61.383 65.000 0.00 0.00 0.00 4.85
235 236 1.077068 CGTCTCTCTCTCCTGGGCT 60.077 63.158 0.00 0.00 0.00 5.19
236 237 1.077357 TCGTCTCTCTCTCCTGGGC 60.077 63.158 0.00 0.00 0.00 5.36
237 238 0.544223 TCTCGTCTCTCTCTCCTGGG 59.456 60.000 0.00 0.00 0.00 4.45
238 239 1.475034 CCTCTCGTCTCTCTCTCCTGG 60.475 61.905 0.00 0.00 0.00 4.45
239 240 1.953559 CCTCTCGTCTCTCTCTCCTG 58.046 60.000 0.00 0.00 0.00 3.86
240 241 0.180406 GCCTCTCGTCTCTCTCTCCT 59.820 60.000 0.00 0.00 0.00 3.69
241 242 1.157870 CGCCTCTCGTCTCTCTCTCC 61.158 65.000 0.00 0.00 0.00 3.71
242 243 2.307363 CGCCTCTCGTCTCTCTCTC 58.693 63.158 0.00 0.00 0.00 3.20
243 244 4.532490 CGCCTCTCGTCTCTCTCT 57.468 61.111 0.00 0.00 0.00 3.10
252 253 2.993899 ACTTCATACAAAACGCCTCTCG 59.006 45.455 0.00 0.00 45.38 4.04
253 254 3.371285 GGACTTCATACAAAACGCCTCTC 59.629 47.826 0.00 0.00 0.00 3.20
254 255 3.244422 TGGACTTCATACAAAACGCCTCT 60.244 43.478 0.00 0.00 0.00 3.69
255 256 3.071479 TGGACTTCATACAAAACGCCTC 58.929 45.455 0.00 0.00 0.00 4.70
256 257 3.074412 CTGGACTTCATACAAAACGCCT 58.926 45.455 0.00 0.00 0.00 5.52
257 258 2.414161 GCTGGACTTCATACAAAACGCC 60.414 50.000 0.00 0.00 0.00 5.68
258 259 2.484264 AGCTGGACTTCATACAAAACGC 59.516 45.455 0.00 0.00 0.00 4.84
259 260 4.749245 AAGCTGGACTTCATACAAAACG 57.251 40.909 0.00 0.00 30.77 3.60
270 271 5.568620 TTTTTAGAGAGGAAGCTGGACTT 57.431 39.130 0.00 0.00 42.98 3.01
289 290 9.182214 CAGCTGGGCTCACATATATATATTTTT 57.818 33.333 5.57 0.00 36.40 1.94
290 291 7.284034 GCAGCTGGGCTCACATATATATATTTT 59.716 37.037 17.12 0.00 36.40 1.82
291 292 6.769822 GCAGCTGGGCTCACATATATATATTT 59.230 38.462 17.12 0.00 36.40 1.40
292 293 6.100859 AGCAGCTGGGCTCACATATATATATT 59.899 38.462 17.12 0.00 41.05 1.28
293 294 5.605908 AGCAGCTGGGCTCACATATATATAT 59.394 40.000 17.12 0.00 41.05 0.86
294 295 4.964897 AGCAGCTGGGCTCACATATATATA 59.035 41.667 17.12 0.00 41.05 0.86
295 296 3.779183 AGCAGCTGGGCTCACATATATAT 59.221 43.478 17.12 0.00 41.05 0.86
296 297 3.176411 AGCAGCTGGGCTCACATATATA 58.824 45.455 17.12 0.00 41.05 0.86
297 298 1.983691 AGCAGCTGGGCTCACATATAT 59.016 47.619 17.12 0.00 41.05 0.86
298 299 1.427809 AGCAGCTGGGCTCACATATA 58.572 50.000 17.12 0.00 41.05 0.86
299 300 2.228711 AGCAGCTGGGCTCACATAT 58.771 52.632 17.12 0.00 41.05 1.78
300 301 3.731547 AGCAGCTGGGCTCACATA 58.268 55.556 17.12 0.00 41.05 2.29
307 308 2.772691 GCATTCTGAGCAGCTGGGC 61.773 63.158 17.12 0.95 0.00 5.36
308 309 0.752009 ATGCATTCTGAGCAGCTGGG 60.752 55.000 17.12 0.00 46.36 4.45
309 310 1.103803 AATGCATTCTGAGCAGCTGG 58.896 50.000 17.12 0.00 46.36 4.85
310 311 1.472878 ACAATGCATTCTGAGCAGCTG 59.527 47.619 9.53 10.11 46.36 4.24
311 312 1.835494 ACAATGCATTCTGAGCAGCT 58.165 45.000 9.53 0.00 46.36 4.24
312 313 2.223433 GGTACAATGCATTCTGAGCAGC 60.223 50.000 9.53 0.00 46.36 5.25
313 314 2.357009 GGGTACAATGCATTCTGAGCAG 59.643 50.000 9.53 0.00 46.36 4.24
315 316 1.331756 CGGGTACAATGCATTCTGAGC 59.668 52.381 9.53 7.14 0.00 4.26
316 317 2.632377 ACGGGTACAATGCATTCTGAG 58.368 47.619 9.53 0.46 0.00 3.35
317 318 2.779755 ACGGGTACAATGCATTCTGA 57.220 45.000 9.53 0.00 0.00 3.27
318 319 3.190327 TCAAACGGGTACAATGCATTCTG 59.810 43.478 9.53 6.05 0.00 3.02
319 320 3.190535 GTCAAACGGGTACAATGCATTCT 59.809 43.478 9.53 0.00 0.00 2.40
320 321 3.190535 AGTCAAACGGGTACAATGCATTC 59.809 43.478 9.53 0.00 0.00 2.67
321 322 3.153919 AGTCAAACGGGTACAATGCATT 58.846 40.909 5.99 5.99 0.00 3.56
322 323 2.790433 AGTCAAACGGGTACAATGCAT 58.210 42.857 0.00 0.00 0.00 3.96
323 324 2.264005 AGTCAAACGGGTACAATGCA 57.736 45.000 0.00 0.00 0.00 3.96
324 325 2.920647 GCAAGTCAAACGGGTACAATGC 60.921 50.000 0.00 0.00 0.00 3.56
325 326 2.552315 AGCAAGTCAAACGGGTACAATG 59.448 45.455 0.00 0.00 0.00 2.82
326 327 2.858745 AGCAAGTCAAACGGGTACAAT 58.141 42.857 0.00 0.00 0.00 2.71
327 328 2.335316 AGCAAGTCAAACGGGTACAA 57.665 45.000 0.00 0.00 0.00 2.41
328 329 2.215196 GAAGCAAGTCAAACGGGTACA 58.785 47.619 0.00 0.00 0.00 2.90
329 330 1.193874 CGAAGCAAGTCAAACGGGTAC 59.806 52.381 0.00 0.00 0.00 3.34
330 331 1.068895 TCGAAGCAAGTCAAACGGGTA 59.931 47.619 0.00 0.00 0.00 3.69
331 332 0.179067 TCGAAGCAAGTCAAACGGGT 60.179 50.000 0.00 0.00 0.00 5.28
332 333 0.941542 TTCGAAGCAAGTCAAACGGG 59.058 50.000 0.00 0.00 0.00 5.28
333 334 2.639751 CTTTCGAAGCAAGTCAAACGG 58.360 47.619 0.00 0.00 0.00 4.44
345 346 1.379044 ATGGGCTGGGCTTTCGAAG 60.379 57.895 0.00 0.00 0.00 3.79
346 347 1.378514 GATGGGCTGGGCTTTCGAA 60.379 57.895 0.00 0.00 0.00 3.71
349 350 2.830370 CGGATGGGCTGGGCTTTC 60.830 66.667 0.00 0.00 0.00 2.62
369 370 4.407365 TCCTCTGTTTCCCTTTCCATTTC 58.593 43.478 0.00 0.00 0.00 2.17
380 381 1.404851 CCGCTCTTCTCCTCTGTTTCC 60.405 57.143 0.00 0.00 0.00 3.13
381 382 2.003196 CCGCTCTTCTCCTCTGTTTC 57.997 55.000 0.00 0.00 0.00 2.78
385 386 2.103934 CGCCGCTCTTCTCCTCTG 59.896 66.667 0.00 0.00 0.00 3.35
416 417 1.447314 GGGTACGCCGGAACAAGAG 60.447 63.158 5.05 0.00 34.97 2.85
417 418 2.658422 GGGTACGCCGGAACAAGA 59.342 61.111 5.05 0.00 34.97 3.02
505 510 3.803162 GGGAGGGAAGGCTGGAGC 61.803 72.222 0.00 0.00 41.14 4.70
553 574 1.687297 GATGGAACGGAGGGAGGGAC 61.687 65.000 0.00 0.00 0.00 4.46
589 610 3.073356 TCACCTCGGAATTAAACCCTTGT 59.927 43.478 0.00 0.00 0.00 3.16
617 638 1.257750 AAAGGAATTTGGGGAGCGGC 61.258 55.000 0.00 0.00 0.00 6.53
667 688 4.196971 ACCCTAGAACATAAAATGGCGAC 58.803 43.478 0.00 0.00 33.60 5.19
668 689 4.497291 ACCCTAGAACATAAAATGGCGA 57.503 40.909 0.00 0.00 33.60 5.54
678 699 3.118371 GGTGGATCGAAACCCTAGAACAT 60.118 47.826 9.06 0.00 0.00 2.71
707 750 7.345192 CGAATACAGATGAAATAAAAGACGGG 58.655 38.462 0.00 0.00 0.00 5.28
709 752 7.906160 ACCGAATACAGATGAAATAAAAGACG 58.094 34.615 0.00 0.00 0.00 4.18
728 771 2.814336 GCCTCAGAACAAGAAACCGAAT 59.186 45.455 0.00 0.00 0.00 3.34
748 791 1.815840 GCTGCTAAACCCTCCTCGC 60.816 63.158 0.00 0.00 0.00 5.03
791 834 3.557054 CGATTCACGGATGGATGGGTTAT 60.557 47.826 0.00 0.00 38.46 1.89
792 835 2.224185 CGATTCACGGATGGATGGGTTA 60.224 50.000 0.00 0.00 38.46 2.85
794 837 0.106708 CGATTCACGGATGGATGGGT 59.893 55.000 0.00 0.00 38.46 4.51
795 838 0.392706 TCGATTCACGGATGGATGGG 59.607 55.000 0.00 0.00 42.82 4.00
825 868 0.973632 TCTAGGCTGGAAAGTGCGAA 59.026 50.000 0.00 0.00 0.00 4.70
837 880 2.093235 GCACCTCAACTGAATCTAGGCT 60.093 50.000 0.00 0.00 0.00 4.58
839 882 3.902881 AGCACCTCAACTGAATCTAGG 57.097 47.619 0.00 0.00 0.00 3.02
852 941 0.955428 TTCGCATCACCAAGCACCTC 60.955 55.000 0.00 0.00 0.00 3.85
853 942 1.073025 TTCGCATCACCAAGCACCT 59.927 52.632 0.00 0.00 0.00 4.00
904 995 1.061799 CAAGCAAGCACGCGTCAATC 61.062 55.000 9.86 0.00 36.85 2.67
928 1019 1.000866 GCAGGCAGGAAATTCCCCT 59.999 57.895 8.66 6.20 37.19 4.79
930 1021 0.258774 TAGGCAGGCAGGAAATTCCC 59.741 55.000 8.66 0.00 37.19 3.97
931 1022 1.393603 GTAGGCAGGCAGGAAATTCC 58.606 55.000 3.29 3.29 36.58 3.01
933 1024 0.394352 CCGTAGGCAGGCAGGAAATT 60.394 55.000 0.00 0.00 46.14 1.82
969 1079 3.240134 GACGAAGCAGGACAGGCCA 62.240 63.158 5.01 0.00 40.02 5.36
972 1082 1.153939 CGAGACGAAGCAGGACAGG 60.154 63.158 0.00 0.00 0.00 4.00
1026 1136 0.034670 AGCAGAGTTGGATCCTTGGC 60.035 55.000 14.23 8.15 0.00 4.52
1052 1162 3.254903 AGTTGTGTGACGCAGACTACATA 59.745 43.478 17.52 0.00 36.31 2.29
1053 1163 2.035961 AGTTGTGTGACGCAGACTACAT 59.964 45.455 17.52 6.34 36.31 2.29
1054 1164 1.407618 AGTTGTGTGACGCAGACTACA 59.592 47.619 17.52 0.77 36.31 2.74
1055 1165 2.052157 GAGTTGTGTGACGCAGACTAC 58.948 52.381 11.80 11.28 34.76 2.73
1057 1167 0.747255 AGAGTTGTGTGACGCAGACT 59.253 50.000 11.70 11.70 0.00 3.24
1058 1168 0.855349 CAGAGTTGTGTGACGCAGAC 59.145 55.000 0.00 1.51 0.00 3.51
1059 1169 0.875908 GCAGAGTTGTGTGACGCAGA 60.876 55.000 0.00 0.00 0.00 4.26
1060 1170 1.153597 TGCAGAGTTGTGTGACGCAG 61.154 55.000 0.00 0.00 0.00 5.18
1061 1171 0.532640 ATGCAGAGTTGTGTGACGCA 60.533 50.000 0.00 0.00 0.00 5.24
1062 1172 0.588252 AATGCAGAGTTGTGTGACGC 59.412 50.000 0.00 0.00 0.00 5.19
1183 1309 3.627577 ACATGAATTTAGATGGGACGCAC 59.372 43.478 0.00 0.00 0.00 5.34
1184 1310 3.627123 CACATGAATTTAGATGGGACGCA 59.373 43.478 0.00 0.00 0.00 5.24
1189 1316 7.605449 ACAAAGAACACATGAATTTAGATGGG 58.395 34.615 0.00 0.00 0.00 4.00
1201 1328 5.527511 TTTGCAACAACAAAGAACACATG 57.472 34.783 0.00 0.00 34.68 3.21
1213 1340 7.614908 TCGACGACTATATTATTTGCAACAAC 58.385 34.615 0.00 0.00 0.00 3.32
1215 1342 6.419710 CCTCGACGACTATATTATTTGCAACA 59.580 38.462 0.00 0.00 0.00 3.33
1216 1343 6.420008 ACCTCGACGACTATATTATTTGCAAC 59.580 38.462 0.00 0.00 0.00 4.17
1218 1345 6.080648 ACCTCGACGACTATATTATTTGCA 57.919 37.500 0.00 0.00 0.00 4.08
1219 1346 7.404139 AAACCTCGACGACTATATTATTTGC 57.596 36.000 0.00 0.00 0.00 3.68
1235 1362 6.315393 GGCTTACTGAATTCATAAAACCTCGA 59.685 38.462 8.96 0.00 0.00 4.04
1236 1363 6.316390 AGGCTTACTGAATTCATAAAACCTCG 59.684 38.462 8.96 0.00 0.00 4.63
1255 1386 3.087370 TCAGACAGAGTAGCAGGCTTA 57.913 47.619 0.00 0.00 0.00 3.09
1278 1409 5.276868 GCAGTAACAGTAAATATGAGCCGTG 60.277 44.000 0.00 0.00 0.00 4.94
1293 1424 2.095567 GGTGACAATGCAGCAGTAACAG 60.096 50.000 0.00 0.00 36.35 3.16
1294 1425 1.879380 GGTGACAATGCAGCAGTAACA 59.121 47.619 0.00 0.00 36.35 2.41
1295 1426 2.154462 AGGTGACAATGCAGCAGTAAC 58.846 47.619 0.00 0.00 38.68 2.50
1321 1565 9.938280 ACAGTAGTAGCATACAAAAATCTACAA 57.062 29.630 0.00 0.00 46.26 2.41
1353 1712 7.065324 TCCTGACGAAATATGTTTGTGGAATAC 59.935 37.037 0.00 0.00 0.00 1.89
1356 1715 5.309638 TCCTGACGAAATATGTTTGTGGAA 58.690 37.500 0.00 0.00 0.00 3.53
1386 1745 4.500837 CGGTCTGATTCTTACGAGAACATG 59.499 45.833 0.00 0.00 44.27 3.21
1395 1754 3.385111 ACCATCCTCGGTCTGATTCTTAC 59.615 47.826 0.00 0.00 32.11 2.34
1407 1766 1.536943 GCTAGGCCTACCATCCTCGG 61.537 65.000 8.91 0.00 39.06 4.63
1409 1768 1.650528 ATGCTAGGCCTACCATCCTC 58.349 55.000 13.93 0.00 39.06 3.71
1411 1770 7.235606 TGAATATATATGCTAGGCCTACCATCC 59.764 40.741 21.52 3.77 39.06 3.51
1412 1771 8.195165 TGAATATATATGCTAGGCCTACCATC 57.805 38.462 21.52 9.17 39.06 3.51
1413 1772 8.013072 TCTGAATATATATGCTAGGCCTACCAT 58.987 37.037 21.58 21.58 39.06 3.55
1415 1774 7.841282 TCTGAATATATATGCTAGGCCTACC 57.159 40.000 8.91 2.62 0.00 3.18
1431 1790 7.094634 GCATCGTTGAATGGGTTATCTGAATAT 60.095 37.037 0.00 0.00 0.00 1.28
1432 1791 6.204688 GCATCGTTGAATGGGTTATCTGAATA 59.795 38.462 0.00 0.00 0.00 1.75
1433 1792 5.009010 GCATCGTTGAATGGGTTATCTGAAT 59.991 40.000 0.00 0.00 0.00 2.57
1434 1793 4.335315 GCATCGTTGAATGGGTTATCTGAA 59.665 41.667 0.00 0.00 0.00 3.02
1464 1823 4.859629 GGCGTAAATTCGACTGAAGAAT 57.140 40.909 0.00 0.00 39.75 2.40
1486 1845 4.130857 TCAATGTAAGCAAACTTCACCGA 58.869 39.130 0.00 0.00 37.33 4.69
1487 1846 4.466828 CTCAATGTAAGCAAACTTCACCG 58.533 43.478 0.00 0.00 37.33 4.94
1492 1851 5.335191 GCAGTAGCTCAATGTAAGCAAACTT 60.335 40.000 0.00 0.00 42.35 2.66
1564 1929 1.352622 TGCCAAGACCCTCAGTGGTT 61.353 55.000 0.00 0.00 39.24 3.67
1642 2007 3.889815 CTTTCTTGCCAGTCCATATCCA 58.110 45.455 0.00 0.00 0.00 3.41
1657 2022 3.440173 CCCAATCATACGTGTGCTTTCTT 59.560 43.478 7.52 0.00 0.00 2.52
1669 2034 6.424207 GGAGAATAAGAACGACCCAATCATAC 59.576 42.308 0.00 0.00 0.00 2.39
1675 2040 3.119245 CGAGGAGAATAAGAACGACCCAA 60.119 47.826 0.00 0.00 0.00 4.12
1703 2068 2.442212 TAATGCAAGACGACCACGAA 57.558 45.000 0.00 0.00 42.66 3.85
1835 2200 4.495844 GCTTGCGTCAGGGTATGAAATTAC 60.496 45.833 0.00 0.00 40.43 1.89
1836 2201 3.625764 GCTTGCGTCAGGGTATGAAATTA 59.374 43.478 0.00 0.00 40.43 1.40
1854 2219 5.983540 AGAAGAAGGGTGAGTATAAGCTTG 58.016 41.667 9.86 0.00 0.00 4.01
1870 2235 6.981559 GCACCCAGTAAGTATAAGAGAAGAAG 59.018 42.308 0.00 0.00 0.00 2.85
1871 2236 6.668283 AGCACCCAGTAAGTATAAGAGAAGAA 59.332 38.462 0.00 0.00 0.00 2.52
1872 2237 6.096987 CAGCACCCAGTAAGTATAAGAGAAGA 59.903 42.308 0.00 0.00 0.00 2.87
1880 2245 3.036091 GGTCCAGCACCCAGTAAGTATA 58.964 50.000 0.00 0.00 39.69 1.47
1993 2358 9.431887 GACACAAACAGAATTAATCACCTAGTA 57.568 33.333 0.00 0.00 0.00 1.82
2036 2401 5.105392 ACCAGATCTAAGTGCAGAGAAGAAG 60.105 44.000 0.00 0.00 0.00 2.85
2089 2456 2.888834 ACAACACCTGCATTTTCCAC 57.111 45.000 0.00 0.00 0.00 4.02
2157 2524 0.470268 CTGGCCTAGGTCTCCCTACC 60.470 65.000 15.92 2.75 42.66 3.18
2250 2617 1.076332 ATGCCGACGCTTTGAAGTAC 58.924 50.000 0.00 0.00 35.36 2.73
2256 2623 0.040514 TGAAACATGCCGACGCTTTG 60.041 50.000 0.00 0.00 35.36 2.77
2264 2631 1.745087 ACCTAGCAATGAAACATGCCG 59.255 47.619 0.00 0.00 43.57 5.69
2478 2845 4.393062 AGCAATTGTTGACAATCTACCTCG 59.607 41.667 9.59 0.00 45.06 4.63
2543 2910 6.016610 GTCAAGTCCAAGTTTATAGCACCAAA 60.017 38.462 0.00 0.00 0.00 3.28
2546 2913 5.246307 AGTCAAGTCCAAGTTTATAGCACC 58.754 41.667 0.00 0.00 0.00 5.01
2584 2955 5.016173 ACCTAACATAAAGCAAAGCATGGA 58.984 37.500 0.00 0.00 0.00 3.41
2588 2959 8.801882 ATAACTACCTAACATAAAGCAAAGCA 57.198 30.769 0.00 0.00 0.00 3.91
2589 2960 9.110502 AGATAACTACCTAACATAAAGCAAAGC 57.889 33.333 0.00 0.00 0.00 3.51
2669 3047 3.379372 ACGCAGTATGACCGTAGTACAAT 59.621 43.478 0.38 0.00 41.94 2.71
2922 3300 2.569853 TGTGAATAGAGCGGGGAAGAAA 59.430 45.455 0.00 0.00 0.00 2.52
3196 3575 1.136329 AGTATGCATAGGGCCCCCAG 61.136 60.000 21.43 9.69 43.89 4.45
3389 3768 7.703058 AGTTTTTAAGGCATGCTTACTGTAT 57.297 32.000 18.92 0.00 0.00 2.29
3429 3808 6.071278 AGTCCTAAACTCCTAGTACTTGCTTG 60.071 42.308 0.00 0.00 30.02 4.01
3439 3818 6.981559 GCACAAATCTAGTCCTAAACTCCTAG 59.018 42.308 0.00 0.00 39.55 3.02
3470 3849 3.577389 AGGCATAAACCTGAGGTGC 57.423 52.632 4.15 3.70 39.13 5.01
3493 3872 5.462398 AGCGAGTAGTTTTTGTACACAAGAG 59.538 40.000 0.00 0.00 37.15 2.85
3509 3888 4.225984 GTCAGAATATGCTGAGCGAGTAG 58.774 47.826 14.14 0.00 44.92 2.57
3510 3889 4.230314 GTCAGAATATGCTGAGCGAGTA 57.770 45.455 14.14 0.00 44.92 2.59
3580 3959 1.487976 CCAGCCACTCACATGGTCTAT 59.512 52.381 0.00 0.00 42.28 1.98
3651 4032 0.682292 TATGCCCGTCATTATCGCCA 59.318 50.000 0.00 0.00 36.63 5.69
3664 4045 3.988976 TCAATGCCTCTAGATATGCCC 57.011 47.619 0.00 0.00 0.00 5.36
3665 4046 4.645535 TGTTCAATGCCTCTAGATATGCC 58.354 43.478 0.00 0.00 0.00 4.40
3832 4217 5.598416 ACTAAGATCATTGATCCGTGTCA 57.402 39.130 20.49 2.31 39.66 3.58
3922 4307 0.742281 CACAGAATCACAGAGCCGGG 60.742 60.000 2.18 0.00 0.00 5.73
3982 4370 0.230769 GCGTGCGACAGAAGCATATC 59.769 55.000 0.00 0.00 46.96 1.63
4055 4444 0.529378 ACCGAAGAAGCGAATACCGT 59.471 50.000 0.00 0.00 41.15 4.83
4237 4657 1.346722 GGACACTTCCTTTCCTTCCGA 59.653 52.381 0.00 0.00 39.13 4.55
4238 4658 1.809684 GGACACTTCCTTTCCTTCCG 58.190 55.000 0.00 0.00 39.13 4.30
4258 4678 3.425625 GCGACCGCATCAGATTAAACAAA 60.426 43.478 9.73 0.00 41.49 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.