Multiple sequence alignment - TraesCS3D01G050800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G050800 chr3D 100.000 3135 0 0 1 3135 19953449 19956583 0.000000e+00 5790.0
1 TraesCS3D01G050800 chr3D 97.331 562 13 2 1 562 441159381 441158822 0.000000e+00 953.0
2 TraesCS3D01G050800 chr3D 87.575 837 77 15 567 1386 19934684 19935510 0.000000e+00 944.0
3 TraesCS3D01G050800 chr3D 96.791 561 17 1 1 561 517765802 517765243 0.000000e+00 935.0
4 TraesCS3D01G050800 chr3D 96.435 561 19 1 1 561 602247861 602248420 0.000000e+00 924.0
5 TraesCS3D01G050800 chr3D 87.228 368 38 7 751 1110 19913281 19913647 8.090000e-111 411.0
6 TraesCS3D01G050800 chr3D 92.920 113 6 2 1510 1622 19935582 19935692 2.500000e-36 163.0
7 TraesCS3D01G050800 chr3B 88.698 814 65 18 567 1363 32276561 32277364 0.000000e+00 968.0
8 TraesCS3D01G050800 chr3B 83.613 775 65 36 1510 2249 32277438 32278185 0.000000e+00 671.0
9 TraesCS3D01G050800 chr3B 80.940 745 59 40 2436 3125 32278457 32279173 2.160000e-141 512.0
10 TraesCS3D01G050800 chr3B 90.149 335 30 2 596 930 32075005 32075336 1.730000e-117 433.0
11 TraesCS3D01G050800 chr3B 82.340 453 51 12 567 1015 32244623 32245050 1.780000e-97 366.0
12 TraesCS3D01G050800 chr3B 93.200 250 12 3 682 926 32072061 32072310 2.300000e-96 363.0
13 TraesCS3D01G050800 chr3B 91.418 268 17 4 665 926 32265419 32265686 2.300000e-96 363.0
14 TraesCS3D01G050800 chr3B 90.574 244 18 3 597 839 32266602 32266841 5.050000e-83 318.0
15 TraesCS3D01G050800 chr3B 89.300 243 23 1 597 839 32073225 32073464 5.080000e-78 302.0
16 TraesCS3D01G050800 chr3B 94.737 57 2 1 2385 2441 32278387 32278442 1.550000e-13 87.9
17 TraesCS3D01G050800 chr5D 97.326 561 13 2 1 561 297762525 297763083 0.000000e+00 952.0
18 TraesCS3D01G050800 chr7D 97.473 554 13 1 1 554 566455909 566455357 0.000000e+00 944.0
19 TraesCS3D01G050800 chr7D 95.804 572 22 2 1 571 536330174 536329604 0.000000e+00 922.0
20 TraesCS3D01G050800 chr2D 96.975 562 16 1 1 562 617955120 617955680 0.000000e+00 942.0
21 TraesCS3D01G050800 chr2D 97.112 554 14 2 1 554 28061447 28060896 0.000000e+00 933.0
22 TraesCS3D01G050800 chr1D 97.107 553 15 1 2 554 198893113 198893664 0.000000e+00 931.0
23 TraesCS3D01G050800 chr3A 90.282 710 49 13 692 1389 27577877 27578578 0.000000e+00 911.0
24 TraesCS3D01G050800 chr3A 85.771 759 71 21 1501 2249 27578613 27579344 0.000000e+00 769.0
25 TraesCS3D01G050800 chr3A 84.483 522 42 20 2256 2766 27579473 27579966 2.190000e-131 479.0
26 TraesCS3D01G050800 chr3A 92.073 164 13 0 2957 3120 27585972 27586135 6.760000e-57 231.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G050800 chr3D 19953449 19956583 3134 False 5790.000000 5790 100.000000 1 3135 1 chr3D.!!$F2 3134
1 TraesCS3D01G050800 chr3D 441158822 441159381 559 True 953.000000 953 97.331000 1 562 1 chr3D.!!$R1 561
2 TraesCS3D01G050800 chr3D 517765243 517765802 559 True 935.000000 935 96.791000 1 561 1 chr3D.!!$R2 560
3 TraesCS3D01G050800 chr3D 602247861 602248420 559 False 924.000000 924 96.435000 1 561 1 chr3D.!!$F3 560
4 TraesCS3D01G050800 chr3D 19934684 19935692 1008 False 553.500000 944 90.247500 567 1622 2 chr3D.!!$F4 1055
5 TraesCS3D01G050800 chr3B 32276561 32279173 2612 False 559.725000 968 86.997000 567 3125 4 chr3B.!!$F4 2558
6 TraesCS3D01G050800 chr3B 32072061 32075336 3275 False 366.000000 433 90.883000 596 930 3 chr3B.!!$F2 334
7 TraesCS3D01G050800 chr3B 32265419 32266841 1422 False 340.500000 363 90.996000 597 926 2 chr3B.!!$F3 329
8 TraesCS3D01G050800 chr5D 297762525 297763083 558 False 952.000000 952 97.326000 1 561 1 chr5D.!!$F1 560
9 TraesCS3D01G050800 chr7D 566455357 566455909 552 True 944.000000 944 97.473000 1 554 1 chr7D.!!$R2 553
10 TraesCS3D01G050800 chr7D 536329604 536330174 570 True 922.000000 922 95.804000 1 571 1 chr7D.!!$R1 570
11 TraesCS3D01G050800 chr2D 617955120 617955680 560 False 942.000000 942 96.975000 1 562 1 chr2D.!!$F1 561
12 TraesCS3D01G050800 chr2D 28060896 28061447 551 True 933.000000 933 97.112000 1 554 1 chr2D.!!$R1 553
13 TraesCS3D01G050800 chr1D 198893113 198893664 551 False 931.000000 931 97.107000 2 554 1 chr1D.!!$F1 552
14 TraesCS3D01G050800 chr3A 27577877 27579966 2089 False 719.666667 911 86.845333 692 2766 3 chr3A.!!$F2 2074

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
814 3171 0.610232 CTCCAAAAGGCACCTGGGAG 60.61 60.0 14.41 14.41 35.17 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2269 5009 0.38359 ATCGACATCCGTCTGCAGAG 59.616 55.0 18.89 11.25 40.23 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 7.170965 TCTCTTATTGCTTGGAAGACAAAGAT 58.829 34.615 0.00 0.00 38.91 2.40
157 158 2.964464 TGGTTACGGTGGTTACTTGAGA 59.036 45.455 0.00 0.00 0.00 3.27
503 505 0.879090 GGGTTTCCTGCACTTTACCG 59.121 55.000 0.00 0.00 0.00 4.02
565 568 4.993028 AGTTGCCCATTCCTAACACTAAA 58.007 39.130 0.00 0.00 0.00 1.85
574 577 9.490379 CCCATTCCTAACACTAAATACATACTC 57.510 37.037 0.00 0.00 0.00 2.59
580 583 8.618677 CCTAACACTAAATACATACTCGAGTGA 58.381 37.037 28.12 12.26 37.01 3.41
581 584 9.999009 CTAACACTAAATACATACTCGAGTGAA 57.001 33.333 28.12 9.64 37.01 3.18
583 586 8.858003 ACACTAAATACATACTCGAGTGAATG 57.142 34.615 28.12 24.31 37.01 2.67
584 587 8.467598 ACACTAAATACATACTCGAGTGAATGT 58.532 33.333 28.07 28.07 37.01 2.71
585 588 9.302345 CACTAAATACATACTCGAGTGAATGTT 57.698 33.333 29.44 18.73 35.87 2.71
586 589 9.302345 ACTAAATACATACTCGAGTGAATGTTG 57.698 33.333 29.44 19.29 34.54 3.33
588 591 4.537135 ACATACTCGAGTGAATGTTGGT 57.463 40.909 28.12 10.63 0.00 3.67
591 594 6.042777 ACATACTCGAGTGAATGTTGGTATG 58.957 40.000 28.12 19.58 40.24 2.39
592 595 4.537135 ACTCGAGTGAATGTTGGTATGT 57.463 40.909 19.30 0.00 0.00 2.29
593 596 4.495422 ACTCGAGTGAATGTTGGTATGTC 58.505 43.478 19.30 0.00 0.00 3.06
594 597 3.857052 TCGAGTGAATGTTGGTATGTCC 58.143 45.455 0.00 0.00 0.00 4.02
595 598 2.936498 CGAGTGAATGTTGGTATGTCCC 59.064 50.000 0.00 0.00 34.77 4.46
596 599 3.279434 GAGTGAATGTTGGTATGTCCCC 58.721 50.000 0.00 0.00 34.77 4.81
599 602 3.443681 GTGAATGTTGGTATGTCCCCTTG 59.556 47.826 0.00 0.00 34.77 3.61
606 1175 1.453155 GTATGTCCCCTTGTGCACAG 58.547 55.000 20.59 13.74 0.00 3.66
619 1188 4.775058 TGTGCACAGTTGTTGTAAGTTT 57.225 36.364 17.42 0.00 38.16 2.66
620 1189 4.480541 TGTGCACAGTTGTTGTAAGTTTG 58.519 39.130 17.42 0.00 38.16 2.93
621 1190 4.216472 TGTGCACAGTTGTTGTAAGTTTGA 59.784 37.500 17.42 0.00 38.16 2.69
632 1201 6.791303 TGTTGTAAGTTTGATGAAGTTCCAC 58.209 36.000 0.00 0.00 33.11 4.02
645 1214 4.509970 TGAAGTTCCACGTGTGTTTGATAG 59.490 41.667 15.65 0.00 0.00 2.08
652 1221 4.055360 CACGTGTGTTTGATAGTCCAAGA 58.945 43.478 7.58 0.00 0.00 3.02
667 1236 1.363744 CAAGAAGGATGCACCGACTC 58.636 55.000 0.00 0.00 44.74 3.36
675 1244 1.588404 GATGCACCGACTCACATTACG 59.412 52.381 0.00 0.00 0.00 3.18
680 1249 1.476891 ACCGACTCACATTACGCTCAT 59.523 47.619 0.00 0.00 0.00 2.90
787 1363 4.708421 CCAGAATCACAAGGTTTGGATCAT 59.292 41.667 0.00 0.00 34.12 2.45
814 3171 0.610232 CTCCAAAAGGCACCTGGGAG 60.610 60.000 14.41 14.41 35.17 4.30
958 3322 6.338146 TCAGGTTATAAGAATCACAACCTCG 58.662 40.000 1.40 0.00 45.55 4.63
999 3571 5.005299 CGAAAACCTCAAACCAACATCAAAC 59.995 40.000 0.00 0.00 0.00 2.93
1097 3672 4.351938 CGGTGGACGCGAAGGTGA 62.352 66.667 15.93 0.00 34.82 4.02
1099 3674 2.737376 GTGGACGCGAAGGTGACC 60.737 66.667 15.93 0.00 38.69 4.02
1117 3692 2.162408 GACCAGCAAACTACATCCTTGC 59.838 50.000 0.00 0.00 44.61 4.01
1118 3693 2.161855 CCAGCAAACTACATCCTTGCA 58.838 47.619 8.55 0.00 46.26 4.08
1119 3694 2.095059 CCAGCAAACTACATCCTTGCAC 60.095 50.000 8.55 0.00 46.26 4.57
1120 3695 1.806542 AGCAAACTACATCCTTGCACG 59.193 47.619 8.55 0.00 46.26 5.34
1122 3697 1.468520 CAAACTACATCCTTGCACGGG 59.531 52.381 9.71 3.87 0.00 5.28
1123 3698 0.690762 AACTACATCCTTGCACGGGT 59.309 50.000 9.71 0.00 0.00 5.28
1124 3699 0.690762 ACTACATCCTTGCACGGGTT 59.309 50.000 9.71 0.00 0.00 4.11
1125 3700 1.073284 ACTACATCCTTGCACGGGTTT 59.927 47.619 9.71 0.00 0.00 3.27
1126 3701 2.303600 ACTACATCCTTGCACGGGTTTA 59.696 45.455 9.71 0.00 0.00 2.01
1129 3704 1.468520 CATCCTTGCACGGGTTTACTG 59.531 52.381 9.71 0.00 0.00 2.74
1130 3705 0.759959 TCCTTGCACGGGTTTACTGA 59.240 50.000 9.71 0.00 0.00 3.41
1131 3706 1.141254 TCCTTGCACGGGTTTACTGAA 59.859 47.619 9.71 0.00 0.00 3.02
1133 3708 2.556622 CCTTGCACGGGTTTACTGAAAT 59.443 45.455 0.07 0.00 0.00 2.17
1135 3710 2.852449 TGCACGGGTTTACTGAAATCA 58.148 42.857 0.00 0.00 0.00 2.57
1136 3711 3.215151 TGCACGGGTTTACTGAAATCAA 58.785 40.909 0.00 0.00 0.00 2.57
1137 3712 3.823873 TGCACGGGTTTACTGAAATCAAT 59.176 39.130 0.00 0.00 0.00 2.57
1138 3713 4.083003 TGCACGGGTTTACTGAAATCAATC 60.083 41.667 0.00 0.00 0.00 2.67
1139 3714 4.674362 GCACGGGTTTACTGAAATCAATCC 60.674 45.833 0.00 0.00 0.00 3.01
1140 3715 4.457603 CACGGGTTTACTGAAATCAATCCA 59.542 41.667 0.00 0.00 0.00 3.41
1141 3716 4.457949 ACGGGTTTACTGAAATCAATCCAC 59.542 41.667 0.00 0.00 0.00 4.02
1142 3717 4.142469 CGGGTTTACTGAAATCAATCCACC 60.142 45.833 0.00 0.00 0.00 4.61
1144 3719 5.016831 GGTTTACTGAAATCAATCCACCCT 58.983 41.667 0.00 0.00 0.00 4.34
1145 3720 5.125578 GGTTTACTGAAATCAATCCACCCTC 59.874 44.000 0.00 0.00 0.00 4.30
1146 3721 5.779241 TTACTGAAATCAATCCACCCTCT 57.221 39.130 0.00 0.00 0.00 3.69
1148 3723 3.588842 ACTGAAATCAATCCACCCTCTGA 59.411 43.478 0.00 0.00 0.00 3.27
1153 3728 5.463051 AATCAATCCACCCTCTGATTCTT 57.537 39.130 0.00 0.00 34.22 2.52
1156 3731 6.581388 TCAATCCACCCTCTGATTCTTAAT 57.419 37.500 0.00 0.00 0.00 1.40
1157 3732 6.359804 TCAATCCACCCTCTGATTCTTAATG 58.640 40.000 0.00 0.00 0.00 1.90
1213 3793 2.121506 TGGAGGAGGCCCAAGGTT 60.122 61.111 0.00 0.00 33.88 3.50
1352 3932 2.668212 CCAACGCCTCCGCTTTCA 60.668 61.111 0.00 0.00 38.22 2.69
1364 3944 1.737793 CCGCTTTCATGAACCTGTACC 59.262 52.381 7.89 0.00 0.00 3.34
1371 3951 0.321298 ATGAACCTGTACCGCACCAC 60.321 55.000 0.00 0.00 0.00 4.16
1373 3953 0.533308 GAACCTGTACCGCACCACAA 60.533 55.000 0.00 0.00 0.00 3.33
1390 3970 3.834231 CCACAACCCATTTCTTCATCCTT 59.166 43.478 0.00 0.00 0.00 3.36
1392 3972 5.105756 CCACAACCCATTTCTTCATCCTTAC 60.106 44.000 0.00 0.00 0.00 2.34
1410 3990 9.490379 CATCCTTACTAGTACAGTTTTGTTTCT 57.510 33.333 0.91 0.00 38.80 2.52
1419 3999 8.687824 AGTACAGTTTTGTTTCTGAATTTGTG 57.312 30.769 0.00 0.00 38.76 3.33
1421 4001 7.961325 ACAGTTTTGTTTCTGAATTTGTGTT 57.039 28.000 0.00 0.00 32.28 3.32
1422 4002 8.376889 ACAGTTTTGTTTCTGAATTTGTGTTT 57.623 26.923 0.00 0.00 32.28 2.83
1423 4003 8.495148 ACAGTTTTGTTTCTGAATTTGTGTTTC 58.505 29.630 0.00 0.00 32.28 2.78
1426 4006 5.317733 TGTTTCTGAATTTGTGTTTCGGT 57.682 34.783 0.00 0.00 32.43 4.69
1427 4007 5.098893 TGTTTCTGAATTTGTGTTTCGGTG 58.901 37.500 0.00 0.00 32.43 4.94
1428 4008 3.347958 TCTGAATTTGTGTTTCGGTGC 57.652 42.857 0.00 0.00 32.43 5.01
1430 4010 3.044986 CTGAATTTGTGTTTCGGTGCAG 58.955 45.455 0.00 0.00 0.00 4.41
1434 4014 2.319136 TTGTGTTTCGGTGCAGTACT 57.681 45.000 0.00 0.00 0.00 2.73
1436 4016 2.746269 TGTGTTTCGGTGCAGTACTAC 58.254 47.619 0.00 0.00 0.00 2.73
1437 4017 2.363038 TGTGTTTCGGTGCAGTACTACT 59.637 45.455 0.00 0.00 0.00 2.57
1441 4021 0.806868 TCGGTGCAGTACTACTTCGG 59.193 55.000 0.00 0.00 0.00 4.30
1442 4022 0.801067 CGGTGCAGTACTACTTCGGC 60.801 60.000 0.00 0.00 0.00 5.54
1443 4023 0.459759 GGTGCAGTACTACTTCGGCC 60.460 60.000 0.00 0.00 0.00 6.13
1444 4024 0.245539 GTGCAGTACTACTTCGGCCA 59.754 55.000 2.24 0.00 0.00 5.36
1445 4025 0.245539 TGCAGTACTACTTCGGCCAC 59.754 55.000 2.24 0.00 0.00 5.01
1447 4027 1.183549 CAGTACTACTTCGGCCACCT 58.816 55.000 2.24 0.00 0.00 4.00
1448 4028 1.549170 CAGTACTACTTCGGCCACCTT 59.451 52.381 2.24 0.00 0.00 3.50
1449 4029 2.028385 CAGTACTACTTCGGCCACCTTT 60.028 50.000 2.24 0.00 0.00 3.11
1452 4032 0.323629 CTACTTCGGCCACCTTTCCA 59.676 55.000 2.24 0.00 0.00 3.53
1454 4034 2.282180 TTCGGCCACCTTTCCAGC 60.282 61.111 2.24 0.00 0.00 4.85
1455 4035 3.860930 TTCGGCCACCTTTCCAGCC 62.861 63.158 2.24 0.00 42.18 4.85
1459 4039 3.365265 CCACCTTTCCAGCCGCAC 61.365 66.667 0.00 0.00 0.00 5.34
1460 4040 2.281761 CACCTTTCCAGCCGCACT 60.282 61.111 0.00 0.00 0.00 4.40
1461 4041 1.003839 CACCTTTCCAGCCGCACTA 60.004 57.895 0.00 0.00 0.00 2.74
1463 4043 0.109723 ACCTTTCCAGCCGCACTAAA 59.890 50.000 0.00 0.00 0.00 1.85
1464 4044 0.521735 CCTTTCCAGCCGCACTAAAC 59.478 55.000 0.00 0.00 0.00 2.01
1465 4045 1.234821 CTTTCCAGCCGCACTAAACA 58.765 50.000 0.00 0.00 0.00 2.83
1466 4046 1.812571 CTTTCCAGCCGCACTAAACAT 59.187 47.619 0.00 0.00 0.00 2.71
1467 4047 1.448985 TTCCAGCCGCACTAAACATC 58.551 50.000 0.00 0.00 0.00 3.06
1468 4048 0.323302 TCCAGCCGCACTAAACATCA 59.677 50.000 0.00 0.00 0.00 3.07
1469 4049 1.164411 CCAGCCGCACTAAACATCAA 58.836 50.000 0.00 0.00 0.00 2.57
1470 4050 1.539388 CCAGCCGCACTAAACATCAAA 59.461 47.619 0.00 0.00 0.00 2.69
1471 4051 2.164219 CCAGCCGCACTAAACATCAAAT 59.836 45.455 0.00 0.00 0.00 2.32
1472 4052 3.367292 CCAGCCGCACTAAACATCAAATT 60.367 43.478 0.00 0.00 0.00 1.82
1473 4053 4.142491 CCAGCCGCACTAAACATCAAATTA 60.142 41.667 0.00 0.00 0.00 1.40
1474 4054 5.398169 CAGCCGCACTAAACATCAAATTAA 58.602 37.500 0.00 0.00 0.00 1.40
1475 4055 5.286082 CAGCCGCACTAAACATCAAATTAAC 59.714 40.000 0.00 0.00 0.00 2.01
1476 4056 4.561213 GCCGCACTAAACATCAAATTAACC 59.439 41.667 0.00 0.00 0.00 2.85
1477 4057 5.099575 CCGCACTAAACATCAAATTAACCC 58.900 41.667 0.00 0.00 0.00 4.11
1478 4058 5.336055 CCGCACTAAACATCAAATTAACCCA 60.336 40.000 0.00 0.00 0.00 4.51
1479 4059 6.329496 CGCACTAAACATCAAATTAACCCAT 58.671 36.000 0.00 0.00 0.00 4.00
1480 4060 6.811170 CGCACTAAACATCAAATTAACCCATT 59.189 34.615 0.00 0.00 0.00 3.16
1481 4061 7.201427 CGCACTAAACATCAAATTAACCCATTG 60.201 37.037 0.00 0.00 0.00 2.82
1482 4062 7.602265 GCACTAAACATCAAATTAACCCATTGT 59.398 33.333 0.00 0.00 0.00 2.71
1487 4067 9.838339 AAACATCAAATTAACCCATTGTAAACA 57.162 25.926 0.00 0.00 0.00 2.83
1489 4069 9.434420 ACATCAAATTAACCCATTGTAAACATG 57.566 29.630 0.00 0.00 0.00 3.21
1490 4070 9.650539 CATCAAATTAACCCATTGTAAACATGA 57.349 29.630 0.00 0.00 0.00 3.07
1498 4078 8.546597 AACCCATTGTAAACATGAAATTAAGC 57.453 30.769 0.00 0.00 0.00 3.09
1499 4079 7.102993 ACCCATTGTAAACATGAAATTAAGCC 58.897 34.615 0.00 0.00 0.00 4.35
1669 4249 5.630121 AGAAGTTCATCATGGTAACCAACA 58.370 37.500 5.50 0.00 36.95 3.33
1670 4250 6.248433 AGAAGTTCATCATGGTAACCAACAT 58.752 36.000 5.50 0.00 36.95 2.71
1673 4253 6.480763 AGTTCATCATGGTAACCAACATACA 58.519 36.000 0.00 0.00 36.95 2.29
1675 4255 6.940831 TCATCATGGTAACCAACATACATG 57.059 37.500 0.00 0.00 36.95 3.21
1676 4256 5.827267 TCATCATGGTAACCAACATACATGG 59.173 40.000 0.00 0.00 43.84 3.66
1678 4258 2.729194 TGGTAACCAACATACATGGCC 58.271 47.619 0.00 0.00 41.89 5.36
1680 4260 2.687935 GGTAACCAACATACATGGCCTG 59.312 50.000 3.32 2.01 41.89 4.85
1681 4261 1.851304 AACCAACATACATGGCCTGG 58.149 50.000 3.32 2.52 41.89 4.45
1682 4262 0.704076 ACCAACATACATGGCCTGGT 59.296 50.000 3.32 3.30 41.89 4.00
1683 4263 1.340991 ACCAACATACATGGCCTGGTC 60.341 52.381 3.32 0.00 41.89 4.02
1685 4265 0.998928 AACATACATGGCCTGGTCCA 59.001 50.000 3.32 11.41 40.97 4.02
1686 4266 0.548031 ACATACATGGCCTGGTCCAG 59.452 55.000 12.40 12.40 39.89 3.86
1726 4306 6.433847 TCTGAACCCTGAAGTCTGATAAAA 57.566 37.500 0.00 0.00 0.00 1.52
1736 4316 9.334947 CCTGAAGTCTGATAAAATCATACACAT 57.665 33.333 7.79 0.00 38.44 3.21
1762 4342 2.357517 CTGCAGACGGTGGTGTCC 60.358 66.667 8.42 0.00 39.77 4.02
1823 4403 1.380112 ACCCTGCTCTACCTCGGTC 60.380 63.158 0.00 0.00 0.00 4.79
1824 4404 1.379977 CCCTGCTCTACCTCGGTCA 60.380 63.158 0.00 0.00 0.00 4.02
1825 4405 1.388065 CCCTGCTCTACCTCGGTCAG 61.388 65.000 0.00 0.00 0.00 3.51
1826 4406 0.681564 CCTGCTCTACCTCGGTCAGT 60.682 60.000 0.00 0.00 0.00 3.41
1827 4407 1.408405 CCTGCTCTACCTCGGTCAGTA 60.408 57.143 0.00 0.00 0.00 2.74
1828 4408 2.577700 CTGCTCTACCTCGGTCAGTAT 58.422 52.381 0.00 0.00 0.00 2.12
1829 4409 2.952978 CTGCTCTACCTCGGTCAGTATT 59.047 50.000 0.00 0.00 0.00 1.89
1830 4410 2.950309 TGCTCTACCTCGGTCAGTATTC 59.050 50.000 0.00 0.00 0.00 1.75
1838 4418 3.130516 CCTCGGTCAGTATTCAGCAACTA 59.869 47.826 0.00 0.00 0.00 2.24
1839 4419 4.381612 CCTCGGTCAGTATTCAGCAACTAA 60.382 45.833 0.00 0.00 0.00 2.24
1842 4422 4.870426 CGGTCAGTATTCAGCAACTAACAT 59.130 41.667 0.00 0.00 0.00 2.71
1844 4424 6.109359 GGTCAGTATTCAGCAACTAACATCT 58.891 40.000 0.00 0.00 0.00 2.90
1847 4427 7.331934 GTCAGTATTCAGCAACTAACATCTTCA 59.668 37.037 0.00 0.00 0.00 3.02
1848 4428 7.547019 TCAGTATTCAGCAACTAACATCTTCAG 59.453 37.037 0.00 0.00 0.00 3.02
1849 4429 7.332926 CAGTATTCAGCAACTAACATCTTCAGT 59.667 37.037 0.00 0.00 0.00 3.41
1850 4430 5.929697 TTCAGCAACTAACATCTTCAGTG 57.070 39.130 0.00 0.00 0.00 3.66
1851 4431 3.748048 TCAGCAACTAACATCTTCAGTGC 59.252 43.478 0.00 0.00 0.00 4.40
1859 4439 3.523606 ACATCTTCAGTGCTAGCAGAG 57.476 47.619 20.03 13.86 0.00 3.35
1863 4443 2.491298 TCTTCAGTGCTAGCAGAGACTG 59.509 50.000 20.03 20.80 35.93 3.51
1873 4453 3.359194 CAGAGACTGCCGATCCTTG 57.641 57.895 0.00 0.00 0.00 3.61
1874 4454 0.179089 CAGAGACTGCCGATCCTTGG 60.179 60.000 0.00 0.00 0.00 3.61
1889 4472 0.957395 CTTGGCGCAATGGACTGAGT 60.957 55.000 10.83 0.00 0.00 3.41
1890 4473 0.323302 TTGGCGCAATGGACTGAGTA 59.677 50.000 10.83 0.00 0.00 2.59
1892 4475 1.432270 GGCGCAATGGACTGAGTAGC 61.432 60.000 10.83 0.00 0.00 3.58
1893 4476 0.460987 GCGCAATGGACTGAGTAGCT 60.461 55.000 0.30 0.00 0.00 3.32
1897 4480 3.129871 GCAATGGACTGAGTAGCTCATC 58.870 50.000 0.00 0.00 39.92 2.92
1898 4481 3.431346 GCAATGGACTGAGTAGCTCATCA 60.431 47.826 0.00 0.00 39.92 3.07
1899 4482 4.743045 GCAATGGACTGAGTAGCTCATCAT 60.743 45.833 0.00 2.66 39.92 2.45
1900 4483 4.603989 ATGGACTGAGTAGCTCATCATG 57.396 45.455 0.00 0.00 39.92 3.07
1901 4484 3.369175 TGGACTGAGTAGCTCATCATGT 58.631 45.455 0.00 0.00 39.92 3.21
1902 4485 3.771479 TGGACTGAGTAGCTCATCATGTT 59.229 43.478 0.00 0.00 39.92 2.71
1904 4487 4.808364 GGACTGAGTAGCTCATCATGTTTC 59.192 45.833 0.00 0.00 39.92 2.78
1906 4489 3.785486 TGAGTAGCTCATCATGTTTCCG 58.215 45.455 0.00 0.00 35.39 4.30
1907 4490 3.195610 TGAGTAGCTCATCATGTTTCCGT 59.804 43.478 0.00 0.00 35.39 4.69
1909 4492 4.579869 AGTAGCTCATCATGTTTCCGTTT 58.420 39.130 0.00 0.00 0.00 3.60
1910 4493 3.837213 AGCTCATCATGTTTCCGTTTG 57.163 42.857 0.00 0.00 0.00 2.93
1911 4494 2.095059 AGCTCATCATGTTTCCGTTTGC 60.095 45.455 0.00 0.00 0.00 3.68
1912 4495 2.351641 GCTCATCATGTTTCCGTTTGCA 60.352 45.455 0.00 0.00 0.00 4.08
1913 4496 3.856638 GCTCATCATGTTTCCGTTTGCAA 60.857 43.478 0.00 0.00 0.00 4.08
1975 4569 1.154073 GTACGAGCACGAGGTGGAC 60.154 63.158 11.40 0.00 42.66 4.02
2017 4611 1.154150 CGACGTCCGTACCCACTTC 60.154 63.158 10.58 0.00 0.00 3.01
2065 4659 2.537959 ATCCCCAGGGGCAAAGGT 60.538 61.111 21.90 0.00 43.94 3.50
2156 4756 1.457267 TGCCCAGCCAACAACATGT 60.457 52.632 0.00 0.00 0.00 3.21
2161 4761 1.001048 CCAGCCAACAACATGTCACTG 60.001 52.381 0.00 0.00 0.00 3.66
2167 4767 3.565482 CCAACAACATGTCACTGCTAACT 59.435 43.478 0.00 0.00 0.00 2.24
2173 4773 4.569943 ACATGTCACTGCTAACTAACCTG 58.430 43.478 0.00 0.00 0.00 4.00
2176 4776 5.794726 TGTCACTGCTAACTAACCTGTAA 57.205 39.130 0.00 0.00 0.00 2.41
2194 4799 8.647256 ACCTGTAATAAAGTACAGTACAGAGT 57.353 34.615 16.48 11.42 46.43 3.24
2254 4968 0.240945 GGCCTGAACGAACCAACATG 59.759 55.000 0.00 0.00 0.00 3.21
2285 5025 0.805322 CAGCTCTGCAGACGGATGTC 60.805 60.000 13.74 0.00 45.86 3.06
2317 5057 8.043710 AGGTTCAGAATAAGACCTGAATGTAAG 58.956 37.037 7.88 0.00 46.89 2.34
2325 5065 4.755123 AAGACCTGAATGTAAGGTGTTTCG 59.245 41.667 0.00 0.00 46.17 3.46
2326 5066 4.081322 ACCTGAATGTAAGGTGTTTCGT 57.919 40.909 0.00 0.00 46.51 3.85
2327 5067 4.457466 ACCTGAATGTAAGGTGTTTCGTT 58.543 39.130 0.00 0.00 46.51 3.85
2328 5068 5.613329 ACCTGAATGTAAGGTGTTTCGTTA 58.387 37.500 0.00 0.00 46.51 3.18
2329 5069 6.235664 ACCTGAATGTAAGGTGTTTCGTTAT 58.764 36.000 0.00 0.00 46.51 1.89
2330 5070 6.713450 ACCTGAATGTAAGGTGTTTCGTTATT 59.287 34.615 0.00 0.00 46.51 1.40
2331 5071 7.021196 CCTGAATGTAAGGTGTTTCGTTATTG 58.979 38.462 0.00 0.00 0.00 1.90
2332 5072 7.308348 CCTGAATGTAAGGTGTTTCGTTATTGT 60.308 37.037 0.00 0.00 0.00 2.71
2333 5073 7.932335 TGAATGTAAGGTGTTTCGTTATTGTT 58.068 30.769 0.00 0.00 0.00 2.83
2334 5074 9.053840 TGAATGTAAGGTGTTTCGTTATTGTTA 57.946 29.630 0.00 0.00 0.00 2.41
2335 5075 9.321590 GAATGTAAGGTGTTTCGTTATTGTTAC 57.678 33.333 0.00 0.00 0.00 2.50
2336 5076 7.188468 TGTAAGGTGTTTCGTTATTGTTACC 57.812 36.000 0.00 0.00 0.00 2.85
2337 5077 6.765036 TGTAAGGTGTTTCGTTATTGTTACCA 59.235 34.615 0.00 0.00 0.00 3.25
2349 5089 7.655732 TCGTTATTGTTACCATCCTACATGATG 59.344 37.037 0.00 0.00 41.47 3.07
2356 5096 3.578282 ACCATCCTACATGATGATGCGTA 59.422 43.478 0.00 0.00 43.94 4.42
2406 5152 4.028131 ACCACGGTGATCCTGTAAATCTA 58.972 43.478 10.28 0.00 0.00 1.98
2463 5229 5.070981 TGCGATATCTTCTTTCCATCTTCCT 59.929 40.000 0.34 0.00 0.00 3.36
2519 5416 6.471198 CGTATCAGTGTATGTGTTACGTGATT 59.529 38.462 0.00 0.00 37.82 2.57
2523 5420 6.871492 TCAGTGTATGTGTTACGTGATTGATT 59.129 34.615 0.00 0.00 33.15 2.57
2549 5560 3.119708 CGCCATGGAAAGAAAGGAAGAAG 60.120 47.826 18.40 0.00 0.00 2.85
2692 5790 3.512516 GCAATCAGCAGTCGCCCC 61.513 66.667 0.00 0.00 44.79 5.80
2693 5791 2.270205 CAATCAGCAGTCGCCCCT 59.730 61.111 0.00 0.00 39.83 4.79
2719 5817 0.468214 TCTCCGCCTGGATCGAAGAT 60.468 55.000 0.00 0.00 45.33 2.40
2725 5823 2.686235 GCCTGGATCGAAGATGATCTG 58.314 52.381 0.00 0.00 45.12 2.90
2727 5825 2.632028 CCTGGATCGAAGATGATCTGGT 59.368 50.000 0.00 0.00 45.12 4.00
2729 5827 4.281941 CCTGGATCGAAGATGATCTGGTTA 59.718 45.833 0.00 0.00 45.12 2.85
2736 5834 5.299531 TCGAAGATGATCTGGTTACGATCTT 59.700 40.000 0.00 0.00 38.43 2.40
2737 5835 5.400782 CGAAGATGATCTGGTTACGATCTTG 59.599 44.000 0.00 0.00 38.43 3.02
2738 5836 5.207110 AGATGATCTGGTTACGATCTTGG 57.793 43.478 0.00 0.00 38.43 3.61
2745 5843 3.112263 TGGTTACGATCTTGGGAGGATT 58.888 45.455 0.00 0.00 0.00 3.01
2777 5887 1.352404 CCTCGCGAGACCTACTTCG 59.648 63.158 36.59 13.10 35.39 3.79
2778 5888 1.297745 CTCGCGAGACCTACTTCGC 60.298 63.158 32.06 8.65 46.53 4.70
2786 5899 2.278013 CCTACTTCGCCGTCGCTC 60.278 66.667 0.00 0.00 35.26 5.03
2804 5920 7.201461 CCGTCGCTCTCTATCTAACTATCTTAC 60.201 44.444 0.00 0.00 0.00 2.34
2806 5922 9.859427 GTCGCTCTCTATCTAACTATCTTACTA 57.141 37.037 0.00 0.00 0.00 1.82
2807 5923 9.859427 TCGCTCTCTATCTAACTATCTTACTAC 57.141 37.037 0.00 0.00 0.00 2.73
2808 5924 9.865321 CGCTCTCTATCTAACTATCTTACTACT 57.135 37.037 0.00 0.00 0.00 2.57
2844 5960 2.094182 ACTAACATTCTCCGTCATGCGT 60.094 45.455 8.37 0.00 39.32 5.24
2845 5961 2.665649 AACATTCTCCGTCATGCGTA 57.334 45.000 8.37 0.00 39.32 4.42
2846 5962 2.890808 ACATTCTCCGTCATGCGTAT 57.109 45.000 8.37 0.00 39.32 3.06
2847 5963 2.743938 ACATTCTCCGTCATGCGTATC 58.256 47.619 8.37 0.00 39.32 2.24
2853 5980 3.110358 CTCCGTCATGCGTATCGTAAAA 58.890 45.455 8.37 0.00 39.32 1.52
2858 5985 5.276678 CCGTCATGCGTATCGTAAAAGAAAT 60.277 40.000 8.37 0.00 39.32 2.17
2862 5989 6.481976 TCATGCGTATCGTAAAAGAAATGGAT 59.518 34.615 0.00 0.00 0.00 3.41
2863 5990 6.281848 TGCGTATCGTAAAAGAAATGGATC 57.718 37.500 0.00 0.00 0.00 3.36
2864 5991 5.235616 TGCGTATCGTAAAAGAAATGGATCC 59.764 40.000 4.20 4.20 0.00 3.36
2865 5992 5.235616 GCGTATCGTAAAAGAAATGGATCCA 59.764 40.000 18.88 18.88 0.00 3.41
2866 5993 6.646636 CGTATCGTAAAAGAAATGGATCCAC 58.353 40.000 18.99 4.39 0.00 4.02
2868 5995 4.266714 TCGTAAAAGAAATGGATCCACCC 58.733 43.478 18.99 9.17 38.00 4.61
2869 5996 4.018779 TCGTAAAAGAAATGGATCCACCCT 60.019 41.667 18.99 11.48 38.00 4.34
2870 5997 4.096382 CGTAAAAGAAATGGATCCACCCTG 59.904 45.833 18.99 0.00 38.00 4.45
2871 5998 2.149973 AAGAAATGGATCCACCCTGC 57.850 50.000 18.99 3.15 38.00 4.85
2872 5999 1.002069 AGAAATGGATCCACCCTGCA 58.998 50.000 18.99 0.00 38.00 4.41
2875 6002 0.757935 AATGGATCCACCCTGCATGC 60.758 55.000 18.99 11.82 38.00 4.06
2876 6003 1.940242 ATGGATCCACCCTGCATGCA 61.940 55.000 18.99 21.29 38.00 3.96
2877 6004 2.123428 GGATCCACCCTGCATGCAC 61.123 63.158 18.46 3.99 0.00 4.57
2878 6005 2.043652 ATCCACCCTGCATGCACC 60.044 61.111 18.46 0.00 0.00 5.01
2884 6011 2.512286 CCTGCATGCACCGTCGAT 60.512 61.111 18.46 0.00 0.00 3.59
2885 6012 2.528743 CCTGCATGCACCGTCGATC 61.529 63.158 18.46 0.00 0.00 3.69
2886 6013 2.863853 CTGCATGCACCGTCGATCG 61.864 63.158 18.46 9.36 39.52 3.69
2887 6014 4.285149 GCATGCACCGTCGATCGC 62.285 66.667 14.21 4.79 38.35 4.58
2888 6015 3.976375 CATGCACCGTCGATCGCG 61.976 66.667 20.10 20.10 38.35 5.87
2925 6064 2.633657 GCTTGCCTGTCACACACG 59.366 61.111 0.00 0.00 0.00 4.49
2935 6074 2.598637 CTGTCACACACGGTTGATATCG 59.401 50.000 0.00 0.00 0.00 2.92
2945 6084 3.749088 ACGGTTGATATCGCAACTTTTGA 59.251 39.130 0.00 0.00 45.64 2.69
2947 6086 4.377943 CGGTTGATATCGCAACTTTTGACA 60.378 41.667 0.00 0.00 45.64 3.58
2949 6088 4.320667 TGATATCGCAACTTTTGACACG 57.679 40.909 0.00 0.00 0.00 4.49
2954 6093 1.662876 CGCAACTTTTGACACGGGATG 60.663 52.381 0.00 0.00 0.00 3.51
3033 6172 1.193874 GCAGTACGTTTACACTGTGGC 59.806 52.381 15.60 0.72 43.33 5.01
3037 6176 1.210545 ACGTTTACACTGTGGCGACG 61.211 55.000 21.67 21.67 35.39 5.12
3038 6177 1.857364 GTTTACACTGTGGCGACGG 59.143 57.895 13.09 6.09 34.25 4.79
3057 6204 4.471726 CGACGGGTCTCGGGTTCG 62.472 72.222 0.00 0.00 44.45 3.95
3093 6245 2.591715 AGCTTCGCTTTGCCGTGT 60.592 55.556 0.00 0.00 33.89 4.49
3105 6257 1.733399 GCCGTGTCTTGTCTCGTCC 60.733 63.158 0.00 0.00 0.00 4.79
3116 6268 0.721718 GTCTCGTCCATCCTTTTGCG 59.278 55.000 0.00 0.00 0.00 4.85
3125 6277 0.953471 ATCCTTTTGCGCGCACAGTA 60.953 50.000 36.72 20.13 0.00 2.74
3126 6278 1.440353 CCTTTTGCGCGCACAGTAC 60.440 57.895 36.72 0.94 0.00 2.73
3127 6279 1.440353 CTTTTGCGCGCACAGTACC 60.440 57.895 36.72 0.01 0.00 3.34
3128 6280 2.111932 CTTTTGCGCGCACAGTACCA 62.112 55.000 36.72 15.39 0.00 3.25
3129 6281 1.511318 TTTTGCGCGCACAGTACCAT 61.511 50.000 36.72 0.00 0.00 3.55
3130 6282 1.906994 TTTGCGCGCACAGTACCATC 61.907 55.000 36.72 0.00 0.00 3.51
3131 6283 3.564027 GCGCGCACAGTACCATCC 61.564 66.667 29.10 0.00 0.00 3.51
3132 6284 3.254654 CGCGCACAGTACCATCCG 61.255 66.667 8.75 0.00 0.00 4.18
3133 6285 2.183300 GCGCACAGTACCATCCGA 59.817 61.111 0.30 0.00 0.00 4.55
3134 6286 2.165301 GCGCACAGTACCATCCGAC 61.165 63.158 0.30 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 6.238731 CCAAGAAAGACACAATAAGCAGACAA 60.239 38.462 0.00 0.00 0.00 3.18
62 63 1.613925 AGCGAGAAACTGCAGTCTGTA 59.386 47.619 21.95 0.00 0.00 2.74
157 158 2.034124 AGCAGCAGACACACCAAAATT 58.966 42.857 0.00 0.00 0.00 1.82
503 505 5.964958 AAGGCCAATACATATACATGTGC 57.035 39.130 9.11 0.00 45.17 4.57
534 536 4.464947 AGGAATGGGCAACTAGCTTTATC 58.535 43.478 0.00 0.00 44.79 1.75
535 537 4.526438 AGGAATGGGCAACTAGCTTTAT 57.474 40.909 0.00 0.00 44.79 1.40
565 568 6.222038 ACCAACATTCACTCGAGTATGTAT 57.778 37.500 26.41 16.92 29.78 2.29
574 577 2.936498 GGGACATACCAACATTCACTCG 59.064 50.000 0.00 0.00 41.20 4.18
580 583 3.430453 CACAAGGGGACATACCAACATT 58.570 45.455 0.00 0.00 41.20 2.71
581 584 2.883888 GCACAAGGGGACATACCAACAT 60.884 50.000 0.00 0.00 41.20 2.71
582 585 1.546773 GCACAAGGGGACATACCAACA 60.547 52.381 0.00 0.00 41.20 3.33
583 586 1.173913 GCACAAGGGGACATACCAAC 58.826 55.000 0.00 0.00 41.20 3.77
584 587 0.774276 TGCACAAGGGGACATACCAA 59.226 50.000 0.00 0.00 41.20 3.67
585 588 0.037590 GTGCACAAGGGGACATACCA 59.962 55.000 13.17 0.00 41.20 3.25
586 589 0.037590 TGTGCACAAGGGGACATACC 59.962 55.000 19.28 0.00 33.98 2.73
588 591 1.064003 ACTGTGCACAAGGGGACATA 58.936 50.000 21.98 0.00 38.48 2.29
591 594 0.751643 ACAACTGTGCACAAGGGGAC 60.752 55.000 21.98 0.00 0.00 4.46
592 595 0.033601 AACAACTGTGCACAAGGGGA 60.034 50.000 21.98 0.00 0.00 4.81
593 596 0.102844 CAACAACTGTGCACAAGGGG 59.897 55.000 21.98 11.66 0.00 4.79
594 597 0.817013 ACAACAACTGTGCACAAGGG 59.183 50.000 21.98 14.58 36.69 3.95
595 598 3.128589 ACTTACAACAACTGTGCACAAGG 59.871 43.478 21.98 12.82 39.20 3.61
596 599 4.355543 ACTTACAACAACTGTGCACAAG 57.644 40.909 21.98 16.63 39.20 3.16
599 602 4.728534 TCAAACTTACAACAACTGTGCAC 58.271 39.130 10.75 10.75 39.20 4.57
606 1175 7.220108 GTGGAACTTCATCAAACTTACAACAAC 59.780 37.037 0.00 0.00 0.00 3.32
619 1188 2.613026 ACACACGTGGAACTTCATCA 57.387 45.000 21.57 0.00 34.19 3.07
620 1189 3.311322 TCAAACACACGTGGAACTTCATC 59.689 43.478 21.57 0.00 34.19 2.92
621 1190 3.275143 TCAAACACACGTGGAACTTCAT 58.725 40.909 21.57 0.00 34.19 2.57
632 1201 4.152402 CCTTCTTGGACTATCAAACACACG 59.848 45.833 0.00 0.00 38.35 4.49
652 1221 0.615331 ATGTGAGTCGGTGCATCCTT 59.385 50.000 0.00 0.00 0.00 3.36
667 1236 5.349817 ACTCTTCTTCAATGAGCGTAATGTG 59.650 40.000 0.00 0.00 0.00 3.21
675 1244 6.251655 ACAAATGACTCTTCTTCAATGAGC 57.748 37.500 0.00 0.00 0.00 4.26
680 1249 5.003804 GCCCTACAAATGACTCTTCTTCAA 58.996 41.667 0.00 0.00 0.00 2.69
745 1321 7.465353 TTCTGGATTCTGCTGATAGATAGAG 57.535 40.000 0.00 0.00 0.00 2.43
787 1363 2.556559 GGTGCCTTTTGGAGTTGGGATA 60.557 50.000 0.00 0.00 44.07 2.59
814 3171 7.598493 TCTTGTTCAGCAAAAATATACTTTGGC 59.402 33.333 0.00 0.00 35.75 4.52
884 3242 3.117512 ACCTTCAAGGGAGAAAGCAAAGA 60.118 43.478 8.75 0.00 40.58 2.52
958 3322 0.815213 TCGGTATGCAGCTTGCCATC 60.815 55.000 14.63 0.00 44.23 3.51
999 3571 1.889105 CGATCCTCCCGTTGCCATG 60.889 63.158 0.00 0.00 0.00 3.66
1097 3672 2.162681 GCAAGGATGTAGTTTGCTGGT 58.837 47.619 1.51 0.00 42.84 4.00
1099 3674 2.413239 CGTGCAAGGATGTAGTTTGCTG 60.413 50.000 9.47 0.00 45.53 4.41
1117 3692 4.457603 TGGATTGATTTCAGTAAACCCGTG 59.542 41.667 0.00 0.00 0.00 4.94
1118 3693 4.457949 GTGGATTGATTTCAGTAAACCCGT 59.542 41.667 0.00 0.00 0.00 5.28
1119 3694 4.142469 GGTGGATTGATTTCAGTAAACCCG 60.142 45.833 0.00 0.00 0.00 5.28
1120 3695 4.159693 GGGTGGATTGATTTCAGTAAACCC 59.840 45.833 8.85 8.85 35.58 4.11
1122 3697 5.946377 AGAGGGTGGATTGATTTCAGTAAAC 59.054 40.000 0.00 0.00 0.00 2.01
1123 3698 5.945784 CAGAGGGTGGATTGATTTCAGTAAA 59.054 40.000 0.00 0.00 0.00 2.01
1124 3699 5.250543 TCAGAGGGTGGATTGATTTCAGTAA 59.749 40.000 0.00 0.00 0.00 2.24
1125 3700 4.782691 TCAGAGGGTGGATTGATTTCAGTA 59.217 41.667 0.00 0.00 0.00 2.74
1126 3701 3.588842 TCAGAGGGTGGATTGATTTCAGT 59.411 43.478 0.00 0.00 0.00 3.41
1129 3704 5.444176 AGAATCAGAGGGTGGATTGATTTC 58.556 41.667 0.00 0.00 39.60 2.17
1130 3705 5.463051 AGAATCAGAGGGTGGATTGATTT 57.537 39.130 0.00 0.00 39.60 2.17
1131 3706 5.463051 AAGAATCAGAGGGTGGATTGATT 57.537 39.130 0.00 0.00 41.53 2.57
1133 3708 6.359804 CATTAAGAATCAGAGGGTGGATTGA 58.640 40.000 0.00 0.00 34.06 2.57
1135 3710 5.433051 TCCATTAAGAATCAGAGGGTGGATT 59.567 40.000 0.00 0.00 36.49 3.01
1136 3711 4.977739 TCCATTAAGAATCAGAGGGTGGAT 59.022 41.667 0.00 0.00 0.00 3.41
1137 3712 4.370776 TCCATTAAGAATCAGAGGGTGGA 58.629 43.478 0.00 0.00 0.00 4.02
1138 3713 4.778213 TCCATTAAGAATCAGAGGGTGG 57.222 45.455 0.00 0.00 0.00 4.61
1139 3714 4.518211 GCATCCATTAAGAATCAGAGGGTG 59.482 45.833 0.00 0.00 0.00 4.61
1140 3715 4.723309 GCATCCATTAAGAATCAGAGGGT 58.277 43.478 0.00 0.00 0.00 4.34
1141 3716 3.750130 CGCATCCATTAAGAATCAGAGGG 59.250 47.826 0.00 0.00 0.00 4.30
1142 3717 4.212847 CACGCATCCATTAAGAATCAGAGG 59.787 45.833 0.00 0.00 0.00 3.69
1144 3719 3.561310 GCACGCATCCATTAAGAATCAGA 59.439 43.478 0.00 0.00 0.00 3.27
1145 3720 3.313249 TGCACGCATCCATTAAGAATCAG 59.687 43.478 0.00 0.00 0.00 2.90
1146 3721 3.277715 TGCACGCATCCATTAAGAATCA 58.722 40.909 0.00 0.00 0.00 2.57
1148 3723 4.494350 GATGCACGCATCCATTAAGAAT 57.506 40.909 19.18 0.00 45.06 2.40
1352 3932 0.321298 GTGGTGCGGTACAGGTTCAT 60.321 55.000 0.00 0.00 0.00 2.57
1364 3944 0.673437 AAGAAATGGGTTGTGGTGCG 59.327 50.000 0.00 0.00 0.00 5.34
1371 3951 7.112779 ACTAGTAAGGATGAAGAAATGGGTTG 58.887 38.462 0.00 0.00 0.00 3.77
1373 3953 6.893020 ACTAGTAAGGATGAAGAAATGGGT 57.107 37.500 0.00 0.00 0.00 4.51
1410 3990 2.425312 ACTGCACCGAAACACAAATTCA 59.575 40.909 0.00 0.00 0.00 2.57
1416 3996 2.363038 AGTAGTACTGCACCGAAACACA 59.637 45.455 13.75 0.00 0.00 3.72
1418 3998 3.645884 GAAGTAGTACTGCACCGAAACA 58.354 45.455 13.75 0.00 0.00 2.83
1419 3999 2.660236 CGAAGTAGTACTGCACCGAAAC 59.340 50.000 13.75 0.00 0.00 2.78
1421 4001 1.200716 CCGAAGTAGTACTGCACCGAA 59.799 52.381 20.28 0.00 0.00 4.30
1422 4002 0.806868 CCGAAGTAGTACTGCACCGA 59.193 55.000 20.28 0.00 0.00 4.69
1423 4003 0.801067 GCCGAAGTAGTACTGCACCG 60.801 60.000 13.75 14.26 0.00 4.94
1426 4006 0.245539 GTGGCCGAAGTAGTACTGCA 59.754 55.000 13.75 0.00 0.00 4.41
1427 4007 0.459759 GGTGGCCGAAGTAGTACTGC 60.460 60.000 5.39 3.75 0.00 4.40
1428 4008 1.183549 AGGTGGCCGAAGTAGTACTG 58.816 55.000 5.39 0.00 0.00 2.74
1430 4010 2.614779 GAAAGGTGGCCGAAGTAGTAC 58.385 52.381 0.00 0.00 0.00 2.73
1434 4014 0.323629 CTGGAAAGGTGGCCGAAGTA 59.676 55.000 0.00 0.00 0.00 2.24
1436 4016 2.335712 GCTGGAAAGGTGGCCGAAG 61.336 63.158 0.00 0.00 0.00 3.79
1437 4017 2.282180 GCTGGAAAGGTGGCCGAA 60.282 61.111 0.00 0.00 0.00 4.30
1442 4022 2.463589 TAGTGCGGCTGGAAAGGTGG 62.464 60.000 0.00 0.00 0.00 4.61
1443 4023 0.605319 TTAGTGCGGCTGGAAAGGTG 60.605 55.000 0.00 0.00 0.00 4.00
1444 4024 0.109723 TTTAGTGCGGCTGGAAAGGT 59.890 50.000 0.00 0.00 0.00 3.50
1445 4025 0.521735 GTTTAGTGCGGCTGGAAAGG 59.478 55.000 0.00 0.00 0.00 3.11
1447 4027 1.810151 GATGTTTAGTGCGGCTGGAAA 59.190 47.619 0.00 0.00 0.00 3.13
1448 4028 1.271108 TGATGTTTAGTGCGGCTGGAA 60.271 47.619 0.00 0.00 0.00 3.53
1449 4029 0.323302 TGATGTTTAGTGCGGCTGGA 59.677 50.000 0.00 0.00 0.00 3.86
1452 4032 5.399013 GTTAATTTGATGTTTAGTGCGGCT 58.601 37.500 0.00 0.00 0.00 5.52
1454 4034 5.099575 GGGTTAATTTGATGTTTAGTGCGG 58.900 41.667 0.00 0.00 0.00 5.69
1455 4035 5.704888 TGGGTTAATTTGATGTTTAGTGCG 58.295 37.500 0.00 0.00 0.00 5.34
1456 4036 7.602265 ACAATGGGTTAATTTGATGTTTAGTGC 59.398 33.333 0.00 0.00 0.00 4.40
1461 4041 9.838339 TGTTTACAATGGGTTAATTTGATGTTT 57.162 25.926 0.00 0.00 0.00 2.83
1463 4043 9.434420 CATGTTTACAATGGGTTAATTTGATGT 57.566 29.630 0.00 0.00 0.00 3.06
1464 4044 9.650539 TCATGTTTACAATGGGTTAATTTGATG 57.349 29.630 0.00 0.00 0.00 3.07
1472 4052 9.646427 GCTTAATTTCATGTTTACAATGGGTTA 57.354 29.630 0.00 0.00 0.00 2.85
1473 4053 7.606073 GGCTTAATTTCATGTTTACAATGGGTT 59.394 33.333 0.00 0.00 0.00 4.11
1474 4054 7.102993 GGCTTAATTTCATGTTTACAATGGGT 58.897 34.615 0.00 0.00 0.00 4.51
1475 4055 7.102346 TGGCTTAATTTCATGTTTACAATGGG 58.898 34.615 0.00 0.00 0.00 4.00
1476 4056 8.721019 ATGGCTTAATTTCATGTTTACAATGG 57.279 30.769 0.00 0.00 0.00 3.16
1477 4057 9.976255 CAATGGCTTAATTTCATGTTTACAATG 57.024 29.630 0.00 0.00 0.00 2.82
1478 4058 9.723601 ACAATGGCTTAATTTCATGTTTACAAT 57.276 25.926 0.00 0.00 0.00 2.71
1479 4059 8.986847 CACAATGGCTTAATTTCATGTTTACAA 58.013 29.630 0.00 0.00 0.00 2.41
1480 4060 8.363390 TCACAATGGCTTAATTTCATGTTTACA 58.637 29.630 0.00 0.00 0.00 2.41
1481 4061 8.755696 TCACAATGGCTTAATTTCATGTTTAC 57.244 30.769 0.00 0.00 0.00 2.01
1482 4062 9.202273 GTTCACAATGGCTTAATTTCATGTTTA 57.798 29.630 0.00 0.00 0.00 2.01
1483 4063 7.933033 AGTTCACAATGGCTTAATTTCATGTTT 59.067 29.630 0.00 0.00 0.00 2.83
1484 4064 7.385752 CAGTTCACAATGGCTTAATTTCATGTT 59.614 33.333 0.00 0.00 0.00 2.71
1485 4065 6.869913 CAGTTCACAATGGCTTAATTTCATGT 59.130 34.615 0.00 0.00 0.00 3.21
1486 4066 6.183360 GCAGTTCACAATGGCTTAATTTCATG 60.183 38.462 0.00 0.00 0.00 3.07
1487 4067 5.870978 GCAGTTCACAATGGCTTAATTTCAT 59.129 36.000 0.00 0.00 0.00 2.57
1488 4068 5.221402 TGCAGTTCACAATGGCTTAATTTCA 60.221 36.000 0.00 0.00 0.00 2.69
1489 4069 5.229423 TGCAGTTCACAATGGCTTAATTTC 58.771 37.500 0.00 0.00 0.00 2.17
1490 4070 5.212532 TGCAGTTCACAATGGCTTAATTT 57.787 34.783 0.00 0.00 0.00 1.82
1491 4071 4.870123 TGCAGTTCACAATGGCTTAATT 57.130 36.364 0.00 0.00 0.00 1.40
1492 4072 4.751060 CATGCAGTTCACAATGGCTTAAT 58.249 39.130 0.00 0.00 0.00 1.40
1493 4073 3.614630 GCATGCAGTTCACAATGGCTTAA 60.615 43.478 14.21 0.00 0.00 1.85
1494 4074 2.094597 GCATGCAGTTCACAATGGCTTA 60.095 45.455 14.21 0.00 0.00 3.09
1495 4075 1.337447 GCATGCAGTTCACAATGGCTT 60.337 47.619 14.21 0.00 0.00 4.35
1496 4076 0.245539 GCATGCAGTTCACAATGGCT 59.754 50.000 14.21 0.00 0.00 4.75
1497 4077 0.038067 TGCATGCAGTTCACAATGGC 60.038 50.000 18.46 0.00 0.00 4.40
1498 4078 1.403647 CCTGCATGCAGTTCACAATGG 60.404 52.381 38.22 21.77 42.15 3.16
1499 4079 1.990799 CCTGCATGCAGTTCACAATG 58.009 50.000 38.22 21.18 42.15 2.82
1669 4249 2.234586 CCTGGACCAGGCCATGTAT 58.765 57.895 27.72 0.00 45.13 2.29
1670 4250 3.739922 CCTGGACCAGGCCATGTA 58.260 61.111 27.72 0.00 45.13 2.29
1686 4266 4.679373 TCAGAAATAGATCAGGTCAGCC 57.321 45.455 0.00 0.00 0.00 4.85
1690 4270 5.129485 TCAGGGTTCAGAAATAGATCAGGTC 59.871 44.000 0.00 0.00 0.00 3.85
1691 4271 5.032846 TCAGGGTTCAGAAATAGATCAGGT 58.967 41.667 0.00 0.00 0.00 4.00
1692 4272 5.620738 TCAGGGTTCAGAAATAGATCAGG 57.379 43.478 0.00 0.00 0.00 3.86
1705 4285 6.778821 TGATTTTATCAGACTTCAGGGTTCA 58.221 36.000 0.00 0.00 33.59 3.18
1726 4306 5.370679 TGCAGCAGTTCATATGTGTATGAT 58.629 37.500 1.90 0.00 44.53 2.45
1736 4316 0.608130 ACCGTCTGCAGCAGTTCATA 59.392 50.000 22.10 0.00 32.61 2.15
1737 4317 0.952497 CACCGTCTGCAGCAGTTCAT 60.952 55.000 22.10 4.36 32.61 2.57
1738 4318 1.595109 CACCGTCTGCAGCAGTTCA 60.595 57.895 22.10 0.00 32.61 3.18
1739 4319 2.320587 CCACCGTCTGCAGCAGTTC 61.321 63.158 22.10 14.73 32.61 3.01
1740 4320 2.281070 CCACCGTCTGCAGCAGTT 60.281 61.111 22.10 2.72 32.61 3.16
1742 4322 3.046087 CACCACCGTCTGCAGCAG 61.046 66.667 17.10 17.10 0.00 4.24
1743 4323 3.807631 GACACCACCGTCTGCAGCA 62.808 63.158 9.47 0.00 32.92 4.41
1744 4324 3.044305 GACACCACCGTCTGCAGC 61.044 66.667 9.47 3.23 32.92 5.25
1762 4342 1.585521 GACCGACGCGATGTACAGG 60.586 63.158 15.93 7.38 0.00 4.00
1823 4403 7.332926 ACTGAAGATGTTAGTTGCTGAATACTG 59.667 37.037 0.00 0.00 0.00 2.74
1824 4404 7.332926 CACTGAAGATGTTAGTTGCTGAATACT 59.667 37.037 0.00 0.00 0.00 2.12
1825 4405 7.459486 CACTGAAGATGTTAGTTGCTGAATAC 58.541 38.462 0.00 0.00 0.00 1.89
1826 4406 6.092670 GCACTGAAGATGTTAGTTGCTGAATA 59.907 38.462 0.00 0.00 0.00 1.75
1827 4407 5.106396 GCACTGAAGATGTTAGTTGCTGAAT 60.106 40.000 0.00 0.00 0.00 2.57
1828 4408 4.214119 GCACTGAAGATGTTAGTTGCTGAA 59.786 41.667 0.00 0.00 0.00 3.02
1829 4409 3.748048 GCACTGAAGATGTTAGTTGCTGA 59.252 43.478 0.00 0.00 0.00 4.26
1830 4410 3.750130 AGCACTGAAGATGTTAGTTGCTG 59.250 43.478 4.15 0.00 32.03 4.41
1838 4418 3.513119 TCTCTGCTAGCACTGAAGATGTT 59.487 43.478 14.93 0.00 0.00 2.71
1839 4419 3.095332 TCTCTGCTAGCACTGAAGATGT 58.905 45.455 14.93 0.00 0.00 3.06
1842 4422 2.491298 CAGTCTCTGCTAGCACTGAAGA 59.509 50.000 22.30 15.60 36.36 2.87
1863 4443 3.211963 ATTGCGCCAAGGATCGGC 61.212 61.111 4.18 0.28 46.62 5.54
1866 4446 0.749454 AGTCCATTGCGCCAAGGATC 60.749 55.000 8.81 3.44 31.91 3.36
1869 4449 1.651240 CTCAGTCCATTGCGCCAAGG 61.651 60.000 4.18 0.00 0.00 3.61
1873 4453 1.432270 GCTACTCAGTCCATTGCGCC 61.432 60.000 4.18 0.00 0.00 6.53
1874 4454 0.460987 AGCTACTCAGTCCATTGCGC 60.461 55.000 0.00 0.00 0.00 6.09
1875 4455 1.134995 TGAGCTACTCAGTCCATTGCG 60.135 52.381 0.00 0.00 35.39 4.85
1889 4472 3.126858 GCAAACGGAAACATGATGAGCTA 59.873 43.478 0.00 0.00 0.00 3.32
1890 4473 2.095059 GCAAACGGAAACATGATGAGCT 60.095 45.455 0.00 0.00 0.00 4.09
1892 4475 3.557577 TGCAAACGGAAACATGATGAG 57.442 42.857 0.00 0.00 0.00 2.90
1893 4476 3.637432 GTTGCAAACGGAAACATGATGA 58.363 40.909 0.00 0.00 36.92 2.92
2017 4611 2.202932 CCGGAGTCCATCTTGGCG 60.203 66.667 10.49 0.00 37.47 5.69
2156 4756 8.591072 ACTTTATTACAGGTTAGTTAGCAGTGA 58.409 33.333 0.00 0.00 0.00 3.41
2173 4773 7.428761 CGCTCACTCTGTACTGTACTTTATTAC 59.571 40.741 17.98 2.67 0.00 1.89
2176 4776 5.646793 TCGCTCACTCTGTACTGTACTTTAT 59.353 40.000 17.98 0.40 0.00 1.40
2194 4799 2.260743 CTGTCTGCAGCTCGCTCA 59.739 61.111 9.47 0.59 43.06 4.26
2206 4811 5.010719 TCTGAACCTTGATTTACGTCTGTCT 59.989 40.000 0.00 0.00 0.00 3.41
2213 4818 5.689819 CCTTGTTCTGAACCTTGATTTACG 58.310 41.667 17.26 0.00 0.00 3.18
2220 4825 1.610522 CAGGCCTTGTTCTGAACCTTG 59.389 52.381 17.26 5.37 33.11 3.61
2267 5007 1.515020 GACATCCGTCTGCAGAGCT 59.485 57.895 18.89 0.00 39.22 4.09
2268 5008 1.875813 CGACATCCGTCTGCAGAGC 60.876 63.158 18.89 11.25 40.23 4.09
2269 5009 0.383590 ATCGACATCCGTCTGCAGAG 59.616 55.000 18.89 11.25 40.23 3.35
2270 5010 0.817654 AATCGACATCCGTCTGCAGA 59.182 50.000 13.74 13.74 40.23 4.26
2279 5019 7.926555 TCTTATTCTGAACCTAAATCGACATCC 59.073 37.037 0.00 0.00 0.00 3.51
2285 5025 7.265673 TCAGGTCTTATTCTGAACCTAAATCG 58.734 38.462 0.00 0.00 37.11 3.34
2327 5067 7.607607 GCATCATCATGTAGGATGGTAACAATA 59.392 37.037 18.57 0.00 44.72 1.90
2328 5068 6.432162 GCATCATCATGTAGGATGGTAACAAT 59.568 38.462 18.57 0.00 44.72 2.71
2329 5069 5.764686 GCATCATCATGTAGGATGGTAACAA 59.235 40.000 18.57 0.00 44.72 2.83
2330 5070 5.308014 GCATCATCATGTAGGATGGTAACA 58.692 41.667 18.57 0.00 44.72 2.41
2331 5071 4.389992 CGCATCATCATGTAGGATGGTAAC 59.610 45.833 18.57 7.29 44.72 2.50
2332 5072 4.040339 ACGCATCATCATGTAGGATGGTAA 59.960 41.667 18.57 0.00 44.72 2.85
2333 5073 3.578282 ACGCATCATCATGTAGGATGGTA 59.422 43.478 18.57 0.00 44.72 3.25
2334 5074 2.369860 ACGCATCATCATGTAGGATGGT 59.630 45.455 18.57 13.88 44.72 3.55
2335 5075 3.049708 ACGCATCATCATGTAGGATGG 57.950 47.619 18.57 13.47 44.72 3.51
2336 5076 4.559153 TGTACGCATCATCATGTAGGATG 58.441 43.478 15.08 15.08 46.77 3.51
2337 5077 4.871933 TGTACGCATCATCATGTAGGAT 57.128 40.909 0.00 0.00 31.86 3.24
2356 5096 0.671796 CGGATTGGATGCATGCATGT 59.328 50.000 36.73 16.51 36.70 3.21
2391 5137 8.568794 CGTTGATAGAGTAGATTTACAGGATCA 58.431 37.037 0.00 0.00 31.96 2.92
2463 5229 0.687354 AAGCGGAAAGGAGAAGCAGA 59.313 50.000 0.00 0.00 0.00 4.26
2519 5416 1.004161 TCTTTCCATGGCGGTCAATCA 59.996 47.619 6.96 0.00 35.57 2.57
2523 5420 1.533625 CTTTCTTTCCATGGCGGTCA 58.466 50.000 6.96 0.00 35.57 4.02
2549 5560 0.678048 GGTGGAGCCCATGTGTTCTC 60.678 60.000 0.00 0.00 35.28 2.87
2571 5663 0.947660 CCTCGATCCACCATGCATCG 60.948 60.000 0.00 0.00 40.66 3.84
2616 5714 3.789128 CGATACCGATAGCTATGGCTTCG 60.789 52.174 11.94 20.49 43.16 3.79
2617 5715 3.489398 CCGATACCGATAGCTATGGCTTC 60.489 52.174 11.94 11.40 43.16 3.86
2618 5716 2.427453 CCGATACCGATAGCTATGGCTT 59.573 50.000 11.94 2.30 43.16 4.35
2619 5717 2.025155 CCGATACCGATAGCTATGGCT 58.975 52.381 11.94 9.16 44.60 4.75
2620 5718 2.022195 TCCGATACCGATAGCTATGGC 58.978 52.381 11.94 0.00 38.22 4.40
2621 5719 2.031807 CGTCCGATACCGATAGCTATGG 59.968 54.545 11.94 14.70 38.22 2.74
2624 5722 1.276138 TCCGTCCGATACCGATAGCTA 59.724 52.381 0.00 0.00 38.22 3.32
2628 5726 1.003464 TCCATCCGTCCGATACCGATA 59.997 52.381 0.00 0.00 38.22 2.92
2719 5817 3.371034 TCCCAAGATCGTAACCAGATCA 58.629 45.455 8.62 0.00 45.05 2.92
2725 5823 3.467803 CAATCCTCCCAAGATCGTAACC 58.532 50.000 0.00 0.00 0.00 2.85
2727 5825 3.380393 TCCAATCCTCCCAAGATCGTAA 58.620 45.455 0.00 0.00 0.00 3.18
2729 5827 1.879575 TCCAATCCTCCCAAGATCGT 58.120 50.000 0.00 0.00 0.00 3.73
2736 5834 0.546122 CGTCCAATCCAATCCTCCCA 59.454 55.000 0.00 0.00 0.00 4.37
2737 5835 0.819666 GCGTCCAATCCAATCCTCCC 60.820 60.000 0.00 0.00 0.00 4.30
2738 5836 0.819666 GGCGTCCAATCCAATCCTCC 60.820 60.000 0.00 0.00 0.00 4.30
2745 5843 3.407967 GAGGGGGCGTCCAATCCA 61.408 66.667 9.07 0.00 37.22 3.41
2777 5887 1.874872 AGTTAGATAGAGAGCGACGGC 59.125 52.381 0.00 0.00 40.37 5.68
2778 5888 5.172934 AGATAGTTAGATAGAGAGCGACGG 58.827 45.833 0.00 0.00 0.00 4.79
2816 5932 8.062448 GCATGACGGAGAATGTTAGTAATTAAC 58.938 37.037 0.00 0.00 41.68 2.01
2817 5933 7.042992 CGCATGACGGAGAATGTTAGTAATTAA 60.043 37.037 0.00 0.00 38.44 1.40
2818 5934 6.419710 CGCATGACGGAGAATGTTAGTAATTA 59.580 38.462 0.00 0.00 38.44 1.40
2819 5935 5.234329 CGCATGACGGAGAATGTTAGTAATT 59.766 40.000 0.00 0.00 38.44 1.40
2820 5936 4.745125 CGCATGACGGAGAATGTTAGTAAT 59.255 41.667 0.00 0.00 38.44 1.89
2821 5937 4.109766 CGCATGACGGAGAATGTTAGTAA 58.890 43.478 0.00 0.00 38.44 2.24
2822 5938 3.702330 CGCATGACGGAGAATGTTAGTA 58.298 45.455 0.00 0.00 38.44 1.82
2823 5939 2.540515 CGCATGACGGAGAATGTTAGT 58.459 47.619 0.00 0.00 38.44 2.24
2844 5960 6.059484 GGGTGGATCCATTTCTTTTACGATA 58.941 40.000 19.62 0.00 38.11 2.92
2845 5961 4.887655 GGGTGGATCCATTTCTTTTACGAT 59.112 41.667 19.62 0.00 38.11 3.73
2846 5962 4.018779 AGGGTGGATCCATTTCTTTTACGA 60.019 41.667 19.62 0.00 38.11 3.43
2847 5963 4.096382 CAGGGTGGATCCATTTCTTTTACG 59.904 45.833 19.62 0.52 38.11 3.18
2853 5980 1.002069 TGCAGGGTGGATCCATTTCT 58.998 50.000 19.62 12.72 38.11 2.52
2858 5985 2.276409 GCATGCAGGGTGGATCCA 59.724 61.111 11.44 11.44 38.11 3.41
2862 5989 4.720902 CGGTGCATGCAGGGTGGA 62.721 66.667 23.41 0.00 0.00 4.02
2864 5991 3.434319 GACGGTGCATGCAGGGTG 61.434 66.667 23.41 13.43 0.00 4.61
2866 5993 4.758251 TCGACGGTGCATGCAGGG 62.758 66.667 23.41 18.17 0.00 4.45
2868 5995 2.863853 CGATCGACGGTGCATGCAG 61.864 63.158 23.41 13.42 38.46 4.41
2869 5996 2.885164 CGATCGACGGTGCATGCA 60.885 61.111 18.46 18.46 38.46 3.96
2870 5997 4.285149 GCGATCGACGGTGCATGC 62.285 66.667 21.57 11.82 42.83 4.06
2871 5998 3.976375 CGCGATCGACGGTGCATG 61.976 66.667 21.57 0.00 42.83 4.06
2888 6015 2.894387 GAGATGGTCGCTGCCTGC 60.894 66.667 0.00 0.00 38.57 4.85
2890 6017 3.474570 GGGAGATGGTCGCTGCCT 61.475 66.667 0.00 0.00 40.35 4.75
2891 6018 4.899239 CGGGAGATGGTCGCTGCC 62.899 72.222 0.00 0.00 40.14 4.85
2899 6026 2.515523 CAGGCAAGCGGGAGATGG 60.516 66.667 0.00 0.00 0.00 3.51
2925 6064 4.851558 GTGTCAAAAGTTGCGATATCAACC 59.148 41.667 3.12 0.00 45.47 3.77
2935 6074 1.335872 CCATCCCGTGTCAAAAGTTGC 60.336 52.381 0.00 0.00 0.00 4.17
2945 6084 1.001269 TCGAGTCTCCATCCCGTGT 60.001 57.895 0.00 0.00 0.00 4.49
2947 6086 0.464735 CTCTCGAGTCTCCATCCCGT 60.465 60.000 13.13 0.00 0.00 5.28
2949 6088 1.460273 GCCTCTCGAGTCTCCATCCC 61.460 65.000 13.13 0.00 0.00 3.85
2954 6093 1.724582 GCTGAGCCTCTCGAGTCTCC 61.725 65.000 13.13 0.00 32.35 3.71
2991 6130 0.035317 CACTGCTGCTACCCACTTCA 59.965 55.000 0.00 0.00 0.00 3.02
3033 6172 4.157958 GAGACCCGTCGTCCGTCG 62.158 72.222 0.00 0.00 43.08 5.12
3038 6177 3.333898 GAACCCGAGACCCGTCGTC 62.334 68.421 0.00 0.00 42.32 4.20
3050 6190 2.811317 GCTCTGCACTCGAACCCG 60.811 66.667 0.00 0.00 37.07 5.28
3053 6193 0.787183 GAACAGCTCTGCACTCGAAC 59.213 55.000 0.00 0.00 0.00 3.95
3057 6204 0.319040 TGACGAACAGCTCTGCACTC 60.319 55.000 0.00 0.00 0.00 3.51
3082 6229 0.235926 GAGACAAGACACGGCAAAGC 59.764 55.000 0.00 0.00 0.00 3.51
3093 6245 3.664107 CAAAAGGATGGACGAGACAAGA 58.336 45.455 0.00 0.00 0.00 3.02
3105 6257 1.798725 CTGTGCGCGCAAAAGGATG 60.799 57.895 38.24 14.88 0.00 3.51
3116 6268 2.165301 GTCGGATGGTACTGTGCGC 61.165 63.158 0.00 0.00 0.00 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.