Multiple sequence alignment - TraesCS3D01G050400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G050400 chr3D 100.000 5029 0 0 1 5029 19539915 19534887 0.000000e+00 9287.0
1 TraesCS3D01G050400 chr3D 88.058 2462 177 45 2116 4515 19362865 19360459 0.000000e+00 2809.0
2 TraesCS3D01G050400 chr3D 89.437 568 39 7 990 1557 19363783 19363237 0.000000e+00 697.0
3 TraesCS3D01G050400 chr3D 95.726 117 4 1 4729 4845 19360333 19360218 2.390000e-43 187.0
4 TraesCS3D01G050400 chr3D 92.593 108 4 4 4741 4845 70728385 70728491 8.720000e-33 152.0
5 TraesCS3D01G050400 chr3D 77.703 296 30 19 1 273 19548723 19548441 1.130000e-31 148.0
6 TraesCS3D01G050400 chr3D 96.226 53 2 0 1858 1910 172378259 172378207 2.490000e-13 87.9
7 TraesCS3D01G050400 chr3D 96.875 32 1 0 273 304 19548402 19548371 3.000000e-03 54.7
8 TraesCS3D01G050400 chr3A 89.413 2437 182 43 2113 4515 27009682 27007288 0.000000e+00 3001.0
9 TraesCS3D01G050400 chr3A 88.095 2016 115 42 153 2119 27011659 27009720 0.000000e+00 2278.0
10 TraesCS3D01G050400 chr3A 83.929 280 28 10 1 268 27216671 27216397 8.360000e-63 252.0
11 TraesCS3D01G050400 chr3A 84.348 230 25 5 48 268 27072843 27072616 1.100000e-51 215.0
12 TraesCS3D01G050400 chr3A 83.913 230 26 5 48 268 27131431 27131204 5.100000e-50 209.0
13 TraesCS3D01G050400 chr3A 97.826 92 2 0 4755 4846 27007127 27007036 5.210000e-35 159.0
14 TraesCS3D01G050400 chr3B 89.382 1667 114 33 2116 3753 31107407 31105775 0.000000e+00 2039.0
15 TraesCS3D01G050400 chr3B 89.442 1648 112 32 2116 3734 31100290 31098676 0.000000e+00 2023.0
16 TraesCS3D01G050400 chr3B 86.040 1927 115 56 1 1854 31109569 31107724 0.000000e+00 1927.0
17 TraesCS3D01G050400 chr3B 90.979 388 31 2 2262 2649 539186046 539186429 2.080000e-143 520.0
18 TraesCS3D01G050400 chr3B 76.386 1046 127 66 126 1098 31116462 31115464 2.130000e-123 453.0
19 TraesCS3D01G050400 chr3B 85.558 457 33 9 3749 4192 31105664 31105228 9.930000e-122 448.0
20 TraesCS3D01G050400 chr3B 88.000 375 27 4 1915 2272 539185656 539186029 1.290000e-115 427.0
21 TraesCS3D01G050400 chr3B 85.287 435 26 13 4229 4651 31105224 31104816 1.010000e-111 414.0
22 TraesCS3D01G050400 chr3B 80.745 483 45 12 1397 1859 539185200 539185654 2.900000e-87 333.0
23 TraesCS3D01G050400 chr3B 84.477 277 28 6 1 268 31215387 31215117 4.990000e-65 259.0
24 TraesCS3D01G050400 chr3B 80.323 371 42 13 50 397 31559762 31559400 8.360000e-63 252.0
25 TraesCS3D01G050400 chr3B 85.052 194 18 2 1672 1854 31100800 31100607 2.390000e-43 187.0
26 TraesCS3D01G050400 chr3B 82.328 232 19 10 48 268 31124600 31124380 1.110000e-41 182.0
27 TraesCS3D01G050400 chr3B 90.756 119 8 2 279 397 31528081 31527966 6.740000e-34 156.0
28 TraesCS3D01G050400 chr3B 78.788 231 30 12 39 268 31113840 31113628 2.440000e-28 137.0
29 TraesCS3D01G050400 chr2A 92.019 1040 63 9 2257 3285 727622101 727621071 0.000000e+00 1443.0
30 TraesCS3D01G050400 chr2A 90.606 330 27 4 1130 1457 727628289 727627962 7.730000e-118 435.0
31 TraesCS3D01G050400 chr2A 90.476 315 24 4 3442 3752 727621071 727620759 1.300000e-110 411.0
32 TraesCS3D01G050400 chr2A 83.991 431 21 11 1336 1765 727627945 727627562 2.210000e-98 370.0
33 TraesCS3D01G050400 chr2A 91.667 72 6 0 2247 2318 727627475 727627404 3.200000e-17 100.0
34 TraesCS3D01G050400 chr2A 94.643 56 3 0 1855 1910 450885207 450885262 2.490000e-13 87.9
35 TraesCS3D01G050400 chr5D 89.848 394 21 6 2264 2649 536501165 536501547 5.850000e-134 488.0
36 TraesCS3D01G050400 chr5D 90.212 378 16 4 1915 2275 536500773 536501146 1.640000e-129 473.0
37 TraesCS3D01G050400 chr5D 83.862 347 26 5 1515 1858 536500451 536500770 2.270000e-78 303.0
38 TraesCS3D01G050400 chr5D 96.296 54 2 0 1858 1911 416973289 416973236 6.930000e-14 89.8
39 TraesCS3D01G050400 chr1D 95.789 95 2 2 4753 4847 478271231 478271323 8.720000e-33 152.0
40 TraesCS3D01G050400 chr2D 96.703 91 2 1 4755 4845 486252350 486252261 3.140000e-32 150.0
41 TraesCS3D01G050400 chr6A 96.629 89 2 1 4756 4844 21713045 21712958 4.060000e-31 147.0
42 TraesCS3D01G050400 chr6A 96.629 89 2 1 4758 4846 22187291 22187378 4.060000e-31 147.0
43 TraesCS3D01G050400 chr4A 92.079 101 6 2 4744 4844 598044050 598044148 1.890000e-29 141.0
44 TraesCS3D01G050400 chr1B 93.750 96 3 3 4750 4845 665493003 665493095 1.890000e-29 141.0
45 TraesCS3D01G050400 chr1B 98.000 50 1 0 1850 1899 66121416 66121465 2.490000e-13 87.9
46 TraesCS3D01G050400 chr6B 98.113 53 1 0 1859 1911 7144798 7144746 5.360000e-15 93.5
47 TraesCS3D01G050400 chr5A 98.113 53 1 0 1859 1911 482768105 482768157 5.360000e-15 93.5
48 TraesCS3D01G050400 chr7B 94.737 57 2 1 1852 1908 522138236 522138181 2.490000e-13 87.9
49 TraesCS3D01G050400 chr5B 94.643 56 2 1 1859 1914 222375831 222375777 8.970000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G050400 chr3D 19534887 19539915 5028 True 9287.000000 9287 100.000000 1 5029 1 chr3D.!!$R1 5028
1 TraesCS3D01G050400 chr3D 19360218 19363783 3565 True 1231.000000 2809 91.073667 990 4845 3 chr3D.!!$R3 3855
2 TraesCS3D01G050400 chr3A 27007036 27011659 4623 True 1812.666667 3001 91.778000 153 4846 3 chr3A.!!$R4 4693
3 TraesCS3D01G050400 chr3B 31104816 31109569 4753 True 1207.000000 2039 86.566750 1 4651 4 chr3B.!!$R6 4650
4 TraesCS3D01G050400 chr3B 31098676 31100800 2124 True 1105.000000 2023 87.247000 1672 3734 2 chr3B.!!$R5 2062
5 TraesCS3D01G050400 chr3B 539185200 539186429 1229 False 426.666667 520 86.574667 1397 2649 3 chr3B.!!$F1 1252
6 TraesCS3D01G050400 chr3B 31113628 31116462 2834 True 295.000000 453 77.587000 39 1098 2 chr3B.!!$R7 1059
7 TraesCS3D01G050400 chr2A 727620759 727622101 1342 True 927.000000 1443 91.247500 2257 3752 2 chr2A.!!$R1 1495
8 TraesCS3D01G050400 chr2A 727627404 727628289 885 True 301.666667 435 88.754667 1130 2318 3 chr2A.!!$R2 1188
9 TraesCS3D01G050400 chr5D 536500451 536501547 1096 False 421.333333 488 87.974000 1515 2649 3 chr5D.!!$F1 1134

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
127 128 0.038599 TGCACTCCACCTACGGACTA 59.961 55.0 0.0 0.0 0.00 2.59 F
1552 1885 0.031314 CTCGGTGAGACATCCATCCG 59.969 60.0 0.0 0.0 35.76 4.18 F
2932 4180 0.386476 TGCTGCAAGAAAAGCTGGTG 59.614 50.0 0.0 0.0 40.21 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1663 2008 0.952280 ACTCTGAAGTCTCAACGCGA 59.048 50.000 15.93 0.00 0.00 5.87 R
3024 4272 2.768698 TGCAGGGAATTTGCACAATTG 58.231 42.857 3.24 3.24 45.89 2.32 R
4670 6270 0.035317 AGCACCTCTGACGCATCAAA 59.965 50.000 0.00 0.00 33.30 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.710818 ACCTACCTCTGTATTGATTTTAGTAGA 57.289 33.333 0.00 0.00 0.00 2.59
34 35 9.968870 CCTACCTCTGTATTGATTTTAGTAGAC 57.031 37.037 0.00 0.00 0.00 2.59
37 38 8.478877 ACCTCTGTATTGATTTTAGTAGACAGG 58.521 37.037 0.00 0.00 35.02 4.00
41 42 9.877178 CTGTATTGATTTTAGTAGACAGGAAGT 57.123 33.333 0.00 0.00 31.52 3.01
49 50 3.843985 GACAGGAAGTCGTCGTGC 58.156 61.111 8.16 0.00 44.42 5.34
63 64 3.695606 GTGCGACCCAGAGGCAGA 61.696 66.667 0.00 0.00 37.36 4.26
65 66 4.154347 GCGACCCAGAGGCAGAGG 62.154 72.222 0.00 0.00 36.11 3.69
66 67 2.363018 CGACCCAGAGGCAGAGGA 60.363 66.667 0.00 0.00 36.11 3.71
67 68 1.984570 CGACCCAGAGGCAGAGGAA 60.985 63.158 0.00 0.00 36.11 3.36
69 70 0.915364 GACCCAGAGGCAGAGGAAAT 59.085 55.000 0.00 0.00 36.11 2.17
70 71 1.283321 GACCCAGAGGCAGAGGAAATT 59.717 52.381 0.00 0.00 36.11 1.82
72 73 2.507471 ACCCAGAGGCAGAGGAAATTAG 59.493 50.000 0.00 0.00 36.11 1.73
73 74 2.570135 CCAGAGGCAGAGGAAATTAGC 58.430 52.381 0.00 0.00 0.00 3.09
74 75 2.208431 CAGAGGCAGAGGAAATTAGCG 58.792 52.381 0.00 0.00 0.00 4.26
75 76 2.111384 AGAGGCAGAGGAAATTAGCGA 58.889 47.619 0.00 0.00 0.00 4.93
76 77 2.703007 AGAGGCAGAGGAAATTAGCGAT 59.297 45.455 0.00 0.00 0.00 4.58
79 80 2.216898 GCAGAGGAAATTAGCGATGCT 58.783 47.619 0.00 0.00 43.41 3.79
80 81 2.615912 GCAGAGGAAATTAGCGATGCTT 59.384 45.455 0.00 0.00 40.44 3.91
82 83 4.439289 GCAGAGGAAATTAGCGATGCTTTT 60.439 41.667 0.00 0.00 40.44 2.27
83 84 5.032863 CAGAGGAAATTAGCGATGCTTTTG 58.967 41.667 0.00 0.00 40.44 2.44
85 86 4.737054 AGGAAATTAGCGATGCTTTTGTG 58.263 39.130 0.00 0.00 40.44 3.33
87 88 4.558860 GGAAATTAGCGATGCTTTTGTGTC 59.441 41.667 0.00 0.00 40.44 3.67
88 89 5.376854 AAATTAGCGATGCTTTTGTGTCT 57.623 34.783 0.00 0.00 40.44 3.41
89 90 6.403200 GGAAATTAGCGATGCTTTTGTGTCTA 60.403 38.462 0.00 0.00 40.44 2.59
90 91 6.683974 AATTAGCGATGCTTTTGTGTCTAT 57.316 33.333 0.00 0.00 40.44 1.98
91 92 7.786178 AATTAGCGATGCTTTTGTGTCTATA 57.214 32.000 0.00 0.00 40.44 1.31
92 93 7.969536 ATTAGCGATGCTTTTGTGTCTATAT 57.030 32.000 0.00 0.00 40.44 0.86
93 94 5.914085 AGCGATGCTTTTGTGTCTATATC 57.086 39.130 0.00 0.00 33.89 1.63
94 95 4.752101 AGCGATGCTTTTGTGTCTATATCC 59.248 41.667 0.00 0.00 33.89 2.59
95 96 4.376413 GCGATGCTTTTGTGTCTATATCCG 60.376 45.833 0.00 0.00 0.00 4.18
96 97 4.745125 CGATGCTTTTGTGTCTATATCCGT 59.255 41.667 0.00 0.00 0.00 4.69
97 98 5.918576 CGATGCTTTTGTGTCTATATCCGTA 59.081 40.000 0.00 0.00 0.00 4.02
98 99 6.419710 CGATGCTTTTGTGTCTATATCCGTAA 59.580 38.462 0.00 0.00 0.00 3.18
99 100 7.116376 CGATGCTTTTGTGTCTATATCCGTAAT 59.884 37.037 0.00 0.00 0.00 1.89
100 101 7.709269 TGCTTTTGTGTCTATATCCGTAATC 57.291 36.000 0.00 0.00 0.00 1.75
101 102 6.704493 TGCTTTTGTGTCTATATCCGTAATCC 59.296 38.462 0.00 0.00 0.00 3.01
102 103 6.929606 GCTTTTGTGTCTATATCCGTAATCCT 59.070 38.462 0.00 0.00 0.00 3.24
104 105 9.408069 CTTTTGTGTCTATATCCGTAATCCTAC 57.592 37.037 0.00 0.00 0.00 3.18
105 106 8.467963 TTTGTGTCTATATCCGTAATCCTACA 57.532 34.615 0.00 0.00 0.00 2.74
106 107 8.645814 TTGTGTCTATATCCGTAATCCTACAT 57.354 34.615 0.00 0.00 0.00 2.29
107 108 9.743581 TTGTGTCTATATCCGTAATCCTACATA 57.256 33.333 0.00 0.00 0.00 2.29
108 109 9.916360 TGTGTCTATATCCGTAATCCTACATAT 57.084 33.333 0.00 0.00 0.00 1.78
110 111 8.847196 TGTCTATATCCGTAATCCTACATATGC 58.153 37.037 1.58 0.00 0.00 3.14
111 112 8.847196 GTCTATATCCGTAATCCTACATATGCA 58.153 37.037 1.58 0.00 0.00 3.96
112 113 8.847196 TCTATATCCGTAATCCTACATATGCAC 58.153 37.037 1.58 0.00 0.00 4.57
114 115 5.386958 TCCGTAATCCTACATATGCACTC 57.613 43.478 1.58 0.00 0.00 3.51
115 116 4.219944 TCCGTAATCCTACATATGCACTCC 59.780 45.833 1.58 0.00 0.00 3.85
118 119 4.357918 AATCCTACATATGCACTCCACC 57.642 45.455 1.58 0.00 0.00 4.61
119 120 3.046283 TCCTACATATGCACTCCACCT 57.954 47.619 1.58 0.00 0.00 4.00
120 121 4.193240 TCCTACATATGCACTCCACCTA 57.807 45.455 1.58 0.00 0.00 3.08
121 122 3.895656 TCCTACATATGCACTCCACCTAC 59.104 47.826 1.58 0.00 0.00 3.18
122 123 2.890808 ACATATGCACTCCACCTACG 57.109 50.000 1.58 0.00 0.00 3.51
123 124 1.412710 ACATATGCACTCCACCTACGG 59.587 52.381 1.58 0.00 0.00 4.02
124 125 1.686587 CATATGCACTCCACCTACGGA 59.313 52.381 0.00 0.00 0.00 4.69
125 126 1.108776 TATGCACTCCACCTACGGAC 58.891 55.000 0.00 0.00 0.00 4.79
127 128 0.038599 TGCACTCCACCTACGGACTA 59.961 55.000 0.00 0.00 0.00 2.59
128 129 1.341679 TGCACTCCACCTACGGACTAT 60.342 52.381 0.00 0.00 0.00 2.12
189 202 4.520111 AGTGCAAGCTTATCATCAACAACA 59.480 37.500 0.00 0.00 0.00 3.33
240 257 4.845580 CGCAAGGGGCAGATCGCT 62.846 66.667 8.94 0.00 45.17 4.93
256 273 2.125552 CTGCGCTCCGGTTGATGA 60.126 61.111 9.73 0.00 0.00 2.92
273 290 6.866480 GTTGATGACCACAACCAATCATTAT 58.134 36.000 0.00 0.00 40.86 1.28
278 303 6.847400 TGACCACAACCAATCATTATAAACG 58.153 36.000 0.00 0.00 0.00 3.60
355 380 2.664851 TTGGCACCGAAGAGCACG 60.665 61.111 0.00 0.00 0.00 5.34
459 500 0.938168 GGCGACGAAACGAACAGTCT 60.938 55.000 0.00 0.00 35.09 3.24
493 534 4.742201 CAGTCACGGTCAGCGGGG 62.742 72.222 0.00 0.00 0.00 5.73
537 580 3.793888 GATCCACCGTGGGTCCCC 61.794 72.222 18.90 0.00 41.85 4.81
814 898 2.487428 CGTCACGGAGGAGCAGAG 59.513 66.667 0.00 0.00 0.00 3.35
815 899 2.183046 GTCACGGAGGAGCAGAGC 59.817 66.667 0.00 0.00 0.00 4.09
816 900 3.443925 TCACGGAGGAGCAGAGCG 61.444 66.667 0.00 0.00 0.00 5.03
817 901 4.504916 CACGGAGGAGCAGAGCGG 62.505 72.222 0.00 0.00 0.00 5.52
903 999 2.963101 TGCGCCAACCACTCTATATAGT 59.037 45.455 4.18 0.00 0.00 2.12
947 1050 4.951963 GGCCTCCCGCGAATCTCG 62.952 72.222 8.23 0.00 43.89 4.04
948 1051 3.900892 GCCTCCCGCGAATCTCGA 61.901 66.667 8.23 0.00 43.74 4.04
949 1052 3.043419 CCTCCCGCGAATCTCGAT 58.957 61.111 8.23 0.00 43.74 3.59
1047 1150 1.231641 CTCCTCATCCCCTCTCCGT 59.768 63.158 0.00 0.00 0.00 4.69
1051 1154 1.195115 CTCATCCCCTCTCCGTTTCA 58.805 55.000 0.00 0.00 0.00 2.69
1552 1885 0.031314 CTCGGTGAGACATCCATCCG 59.969 60.000 0.00 0.00 35.76 4.18
1582 1925 4.890158 TGTCTTCATACTCTTGGCAAGA 57.110 40.909 27.01 27.01 35.87 3.02
1625 1970 7.467539 CGGTACAATTTTGGAGTTTGACAGTTA 60.468 37.037 0.00 0.00 0.00 2.24
1636 1981 6.592220 GGAGTTTGACAGTTAGAGGAATTCTC 59.408 42.308 5.23 1.36 42.75 2.87
1648 1993 3.703001 GGAATTCTCCTCCACAAGACA 57.297 47.619 5.23 0.00 38.88 3.41
1649 1994 3.604582 GGAATTCTCCTCCACAAGACAG 58.395 50.000 5.23 0.00 38.88 3.51
1650 1995 3.008485 GGAATTCTCCTCCACAAGACAGT 59.992 47.826 5.23 0.00 38.88 3.55
1651 1996 4.505742 GGAATTCTCCTCCACAAGACAGTT 60.506 45.833 5.23 0.00 38.88 3.16
1652 1997 5.280011 GGAATTCTCCTCCACAAGACAGTTA 60.280 44.000 5.23 0.00 38.88 2.24
1653 1998 6.380079 AATTCTCCTCCACAAGACAGTTAT 57.620 37.500 0.00 0.00 0.00 1.89
1654 1999 5.825593 TTCTCCTCCACAAGACAGTTATT 57.174 39.130 0.00 0.00 0.00 1.40
1655 2000 5.152623 TCTCCTCCACAAGACAGTTATTG 57.847 43.478 0.00 0.00 0.00 1.90
1656 2001 4.838423 TCTCCTCCACAAGACAGTTATTGA 59.162 41.667 6.48 0.00 0.00 2.57
1657 2002 5.485353 TCTCCTCCACAAGACAGTTATTGAT 59.515 40.000 6.48 0.00 0.00 2.57
1658 2003 5.491070 TCCTCCACAAGACAGTTATTGATG 58.509 41.667 6.48 2.51 0.00 3.07
1659 2004 5.248248 TCCTCCACAAGACAGTTATTGATGA 59.752 40.000 6.48 2.67 0.00 2.92
1660 2005 5.583854 CCTCCACAAGACAGTTATTGATGAG 59.416 44.000 6.48 9.59 32.50 2.90
1661 2006 6.358974 TCCACAAGACAGTTATTGATGAGA 57.641 37.500 6.48 0.00 0.00 3.27
1662 2007 6.950842 TCCACAAGACAGTTATTGATGAGAT 58.049 36.000 6.48 0.00 0.00 2.75
1663 2008 7.397221 TCCACAAGACAGTTATTGATGAGATT 58.603 34.615 6.48 0.00 0.00 2.40
1664 2009 7.550551 TCCACAAGACAGTTATTGATGAGATTC 59.449 37.037 6.48 0.00 0.00 2.52
1665 2010 7.397194 CACAAGACAGTTATTGATGAGATTCG 58.603 38.462 6.48 0.00 0.00 3.34
1666 2011 6.036517 ACAAGACAGTTATTGATGAGATTCGC 59.963 38.462 6.48 0.00 0.00 4.70
1667 2012 4.742167 AGACAGTTATTGATGAGATTCGCG 59.258 41.667 0.00 0.00 0.00 5.87
1668 2013 4.433615 ACAGTTATTGATGAGATTCGCGT 58.566 39.130 5.77 0.00 0.00 6.01
1669 2014 4.870426 ACAGTTATTGATGAGATTCGCGTT 59.130 37.500 5.77 0.00 0.00 4.84
1670 2015 5.193216 CAGTTATTGATGAGATTCGCGTTG 58.807 41.667 5.77 0.00 0.00 4.10
1720 2065 2.725221 AGAGGATGTTGATGGAAGGC 57.275 50.000 0.00 0.00 0.00 4.35
1767 2112 3.307339 GGCCTTGATGTAGATGGAGATCC 60.307 52.174 0.00 0.00 0.00 3.36
1783 2132 2.366916 AGATCCTTTATGGCTCTGGACG 59.633 50.000 0.00 0.00 39.62 4.79
1836 2192 6.421801 GCCCAAAATGAATGATAACTGCATAC 59.578 38.462 0.00 0.00 0.00 2.39
1901 2257 3.694535 AGAGCGTTTAGATCACTACGG 57.305 47.619 13.07 0.00 37.82 4.02
1910 2266 3.211718 AGATCACTACGGAGGGAGTAC 57.788 52.381 5.47 0.00 38.94 2.73
1911 2267 1.872313 GATCACTACGGAGGGAGTACG 59.128 57.143 5.47 0.00 38.94 3.67
1912 2268 0.615331 TCACTACGGAGGGAGTACGT 59.385 55.000 0.00 0.00 43.88 3.57
1913 2269 1.831106 TCACTACGGAGGGAGTACGTA 59.169 52.381 0.00 0.00 41.53 3.57
2118 2768 2.929301 TCTCCCCCTGATACCAAAAGT 58.071 47.619 0.00 0.00 0.00 2.66
2148 2798 7.103641 TCCTCTGATGTGTATTTACTTGTTCC 58.896 38.462 0.00 0.00 0.00 3.62
2307 3014 3.116096 AGTATCCTCTGCAGTGGGTTA 57.884 47.619 29.53 19.93 0.00 2.85
2504 3232 1.512926 CTATACGGCTTGTGCATCCC 58.487 55.000 0.00 0.00 41.91 3.85
2932 4180 0.386476 TGCTGCAAGAAAAGCTGGTG 59.614 50.000 0.00 0.00 40.21 4.17
3024 4272 2.481276 GCTTGGTTGTTTCAGGTTGGTC 60.481 50.000 0.00 0.00 0.00 4.02
3038 4286 4.211794 CAGGTTGGTCAATTGTGCAAATTC 59.788 41.667 5.13 0.00 0.00 2.17
3146 4510 9.937175 GACATGAAGTTTATTTAGACCTTATGC 57.063 33.333 0.00 0.00 0.00 3.14
3174 4538 4.701651 CAGATCAGGTGCTTAAATGGTTCA 59.298 41.667 0.00 0.00 0.00 3.18
3176 4540 5.954150 AGATCAGGTGCTTAAATGGTTCATT 59.046 36.000 0.00 0.00 35.39 2.57
3239 4613 7.609532 CCTCTTTTATTGTCTGAAGATCCAGTT 59.390 37.037 0.00 0.00 35.71 3.16
3263 4637 7.865530 TTATGGTGGCTATGAAGGTATTCTA 57.134 36.000 0.00 0.00 36.33 2.10
3383 4812 5.625251 CAGATGTTTCTGTCCAAGATTTCG 58.375 41.667 0.00 0.00 43.73 3.46
3384 4813 5.180117 CAGATGTTTCTGTCCAAGATTTCGT 59.820 40.000 0.00 0.00 43.73 3.85
3385 4814 5.765182 AGATGTTTCTGTCCAAGATTTCGTT 59.235 36.000 0.00 0.00 33.93 3.85
3386 4815 5.828299 TGTTTCTGTCCAAGATTTCGTTT 57.172 34.783 0.00 0.00 33.93 3.60
3387 4816 6.202516 TGTTTCTGTCCAAGATTTCGTTTT 57.797 33.333 0.00 0.00 33.93 2.43
3388 4817 6.626302 TGTTTCTGTCCAAGATTTCGTTTTT 58.374 32.000 0.00 0.00 33.93 1.94
3389 4818 6.529829 TGTTTCTGTCCAAGATTTCGTTTTTG 59.470 34.615 0.00 0.00 33.93 2.44
3392 4821 6.437928 TCTGTCCAAGATTTCGTTTTTGATG 58.562 36.000 0.00 0.00 0.00 3.07
3402 4831 5.493133 TTCGTTTTTGATGTGCTGTTACT 57.507 34.783 0.00 0.00 0.00 2.24
3418 4847 6.090129 GCTGTTACTTGTCAGTTGTTTTTCA 58.910 36.000 0.00 0.00 34.06 2.69
3419 4848 6.751888 GCTGTTACTTGTCAGTTGTTTTTCAT 59.248 34.615 0.00 0.00 34.06 2.57
3421 4850 9.950680 CTGTTACTTGTCAGTTGTTTTTCATAT 57.049 29.630 0.00 0.00 34.06 1.78
3465 4895 2.674852 CCGATGCTTATGCGCTGATATT 59.325 45.455 9.73 0.00 43.34 1.28
3556 4990 9.770097 TGCTATGGATCTTCAGAGTAAATAAAG 57.230 33.333 0.00 0.00 0.00 1.85
3595 5030 2.289072 TGTGCTCTCTTGCCTGTACTTC 60.289 50.000 0.00 0.00 0.00 3.01
3665 5100 1.153086 GAATGCTCGAGGCCATGGT 60.153 57.895 15.58 0.00 40.92 3.55
3671 5106 0.609131 CTCGAGGCCATGGTGGTTTT 60.609 55.000 14.67 0.00 40.46 2.43
3718 5153 2.611518 GGTATGTCACAGCTCACTCAC 58.388 52.381 0.00 0.00 0.00 3.51
3723 5158 1.032794 TCACAGCTCACTCACGAACT 58.967 50.000 0.00 0.00 0.00 3.01
3818 5367 4.572985 TGCAAACATTTTCTGGACTCTG 57.427 40.909 0.00 0.00 0.00 3.35
3842 5399 5.863935 GGAGCTGCAGTAAACTTAAATTTGG 59.136 40.000 16.64 0.00 0.00 3.28
3853 5410 9.774742 GTAAACTTAAATTTGGCTGTCAGATAG 57.225 33.333 3.32 0.00 0.00 2.08
3860 5417 3.165058 TGGCTGTCAGATAGCTTTACG 57.835 47.619 17.82 0.00 40.92 3.18
3871 5428 0.905357 AGCTTTACGTGGCCTCTCAT 59.095 50.000 3.32 0.00 0.00 2.90
3876 5439 4.302455 CTTTACGTGGCCTCTCATCTATG 58.698 47.826 3.32 0.00 0.00 2.23
3887 5453 5.569026 GCCTCTCATCTATGCATGATCTGAA 60.569 44.000 10.16 0.00 32.21 3.02
3895 5461 2.449464 TGCATGATCTGAAAACAGGGG 58.551 47.619 0.00 0.00 0.00 4.79
3900 5466 3.575805 TGATCTGAAAACAGGGGCTTTT 58.424 40.909 0.00 0.00 0.00 2.27
3946 5512 4.523943 TGCACAAGAGTTGCCTATTGAAAT 59.476 37.500 4.62 0.00 41.42 2.17
3947 5513 5.010922 TGCACAAGAGTTGCCTATTGAAATT 59.989 36.000 4.62 0.00 41.42 1.82
3948 5514 5.928264 GCACAAGAGTTGCCTATTGAAATTT 59.072 36.000 4.62 0.00 41.42 1.82
3949 5515 6.128742 GCACAAGAGTTGCCTATTGAAATTTG 60.129 38.462 0.00 0.00 41.42 2.32
3950 5516 7.147312 CACAAGAGTTGCCTATTGAAATTTGA 58.853 34.615 0.00 0.00 41.42 2.69
3951 5517 7.652909 CACAAGAGTTGCCTATTGAAATTTGAA 59.347 33.333 0.00 0.00 41.42 2.69
3952 5518 8.203485 ACAAGAGTTGCCTATTGAAATTTGAAA 58.797 29.630 0.00 0.00 41.42 2.69
3998 5564 8.605325 ATTACTGGTACTATGTCTAAACAGGT 57.395 34.615 0.00 0.00 39.20 4.00
4051 5617 2.669300 TGGTTAACGCACGCCTTATA 57.331 45.000 0.00 0.00 0.00 0.98
4065 5637 4.219288 ACGCCTTATACTCCGGGTTTATAG 59.781 45.833 0.00 0.00 0.00 1.31
4192 5771 4.497300 TCCCGTTTATGTACTGCTGTAAC 58.503 43.478 4.88 1.03 0.00 2.50
4193 5772 4.221262 TCCCGTTTATGTACTGCTGTAACT 59.779 41.667 4.88 0.00 0.00 2.24
4194 5773 4.328983 CCCGTTTATGTACTGCTGTAACTG 59.671 45.833 4.88 0.00 0.00 3.16
4195 5774 4.927425 CCGTTTATGTACTGCTGTAACTGT 59.073 41.667 4.88 0.00 0.00 3.55
4196 5775 6.094719 CCGTTTATGTACTGCTGTAACTGTA 58.905 40.000 4.88 0.00 0.00 2.74
4197 5776 6.587226 CCGTTTATGTACTGCTGTAACTGTAA 59.413 38.462 4.88 0.91 0.00 2.41
4239 5818 8.747471 TGATATTTGATCAGGCTGTAGATAGAG 58.253 37.037 15.27 0.00 0.00 2.43
4252 5831 4.882427 TGTAGATAGAGACGTTCAGAAGGG 59.118 45.833 7.74 0.00 0.00 3.95
4309 5888 3.507411 AGCAGTAACTGTTCCCTCAGTA 58.493 45.455 0.00 0.00 46.25 2.74
4326 5906 8.047310 TCCCTCAGTATTCTCCTTTGTATTTTC 58.953 37.037 0.00 0.00 0.00 2.29
4390 5970 4.619973 TGTTGTGCATTTCCATGTTTCTC 58.380 39.130 0.00 0.00 32.28 2.87
4431 6011 0.451383 GCGGCATTTGTGCATCAGTA 59.549 50.000 2.61 0.00 36.33 2.74
4445 6025 7.810658 TGTGCATCAGTAAAAGAGAAGATTTC 58.189 34.615 0.00 0.00 0.00 2.17
4480 6060 1.601430 GAGCATCTCATTTCGAAGGGC 59.399 52.381 0.00 0.00 0.00 5.19
4481 6061 0.665298 GCATCTCATTTCGAAGGGCC 59.335 55.000 0.00 0.00 0.00 5.80
4632 6232 8.674263 AAAATAATGTCCAAATTTGCTTGACA 57.326 26.923 22.63 22.63 0.00 3.58
4633 6233 7.894376 AATAATGTCCAAATTTGCTTGACAG 57.106 32.000 23.79 7.98 0.00 3.51
4659 6259 5.690997 TGTTATCAGTATCAGAGGCTACG 57.309 43.478 0.00 0.00 0.00 3.51
4660 6260 5.374071 TGTTATCAGTATCAGAGGCTACGA 58.626 41.667 0.00 0.00 0.00 3.43
4661 6261 5.470437 TGTTATCAGTATCAGAGGCTACGAG 59.530 44.000 0.00 0.00 0.00 4.18
4662 6262 2.222886 TCAGTATCAGAGGCTACGAGC 58.777 52.381 0.00 0.00 41.46 5.03
4663 6263 1.069568 CAGTATCAGAGGCTACGAGCG 60.070 57.143 0.00 0.00 43.62 5.03
4664 6264 0.945813 GTATCAGAGGCTACGAGCGT 59.054 55.000 0.00 0.00 43.62 5.07
4677 6277 3.569957 GAGCGTCTCGTTTTGATGC 57.430 52.632 0.00 0.00 44.28 3.91
4678 6278 4.326058 GCGTCTCGTTTTGATGCG 57.674 55.556 0.00 0.00 36.84 4.73
4679 6279 1.491563 GCGTCTCGTTTTGATGCGT 59.508 52.632 0.00 0.00 36.84 5.24
4680 6280 0.516524 GCGTCTCGTTTTGATGCGTC 60.517 55.000 0.00 0.00 36.84 5.19
4681 6281 0.781787 CGTCTCGTTTTGATGCGTCA 59.218 50.000 3.97 3.97 0.00 4.35
4682 6282 1.201704 CGTCTCGTTTTGATGCGTCAG 60.202 52.381 8.93 0.00 35.39 3.51
4683 6283 2.058798 GTCTCGTTTTGATGCGTCAGA 58.941 47.619 8.93 1.19 35.39 3.27
4684 6284 2.091277 GTCTCGTTTTGATGCGTCAGAG 59.909 50.000 8.93 11.94 35.39 3.35
4685 6285 1.391485 CTCGTTTTGATGCGTCAGAGG 59.609 52.381 8.93 8.00 35.39 3.69
4686 6286 1.148310 CGTTTTGATGCGTCAGAGGT 58.852 50.000 8.93 0.00 35.39 3.85
4687 6287 1.136252 CGTTTTGATGCGTCAGAGGTG 60.136 52.381 8.93 0.00 35.39 4.00
4688 6288 0.874390 TTTTGATGCGTCAGAGGTGC 59.126 50.000 8.93 0.00 35.39 5.01
4689 6289 0.035317 TTTGATGCGTCAGAGGTGCT 59.965 50.000 8.93 0.00 35.39 4.40
4690 6290 0.035317 TTGATGCGTCAGAGGTGCTT 59.965 50.000 8.93 0.00 35.39 3.91
4691 6291 0.035317 TGATGCGTCAGAGGTGCTTT 59.965 50.000 3.97 0.00 0.00 3.51
4692 6292 0.445436 GATGCGTCAGAGGTGCTTTG 59.555 55.000 0.00 0.00 0.00 2.77
4693 6293 1.580845 ATGCGTCAGAGGTGCTTTGC 61.581 55.000 0.00 0.00 0.00 3.68
4694 6294 1.963338 GCGTCAGAGGTGCTTTGCT 60.963 57.895 0.00 0.00 0.00 3.91
4695 6295 1.510480 GCGTCAGAGGTGCTTTGCTT 61.510 55.000 0.00 0.00 0.00 3.91
4698 6298 2.610479 CGTCAGAGGTGCTTTGCTTAGA 60.610 50.000 0.00 0.00 0.00 2.10
4711 6311 6.143496 GCTTTGCTTAGAGGAAACTGTAAAC 58.857 40.000 0.00 0.00 44.59 2.01
4735 6335 7.646314 ACTAGCAAATTATCATTGACATCAGC 58.354 34.615 0.00 0.00 0.00 4.26
4736 6336 5.839621 AGCAAATTATCATTGACATCAGCC 58.160 37.500 0.00 0.00 0.00 4.85
4737 6337 4.678287 GCAAATTATCATTGACATCAGCCG 59.322 41.667 0.00 0.00 0.00 5.52
4746 6346 5.183713 TCATTGACATCAGCCGAAAAAGAAT 59.816 36.000 0.00 0.00 0.00 2.40
4748 6348 3.191162 TGACATCAGCCGAAAAAGAATGG 59.809 43.478 0.00 0.00 0.00 3.16
4846 6446 0.671781 CACTAGACCACTGGTGCTGC 60.672 60.000 5.10 0.00 45.52 5.25
4847 6447 1.446792 CTAGACCACTGGTGCTGCG 60.447 63.158 5.10 0.00 35.25 5.18
4848 6448 3.589654 TAGACCACTGGTGCTGCGC 62.590 63.158 5.10 0.00 35.25 6.09
4855 6455 4.617520 TGGTGCTGCGCCGAGAAA 62.618 61.111 25.57 6.43 36.72 2.52
4856 6456 3.127533 GGTGCTGCGCCGAGAAAT 61.128 61.111 17.46 0.00 0.00 2.17
4857 6457 2.690778 GGTGCTGCGCCGAGAAATT 61.691 57.895 17.46 0.00 0.00 1.82
4858 6458 1.226128 GTGCTGCGCCGAGAAATTC 60.226 57.895 4.18 0.00 0.00 2.17
4859 6459 2.398554 TGCTGCGCCGAGAAATTCC 61.399 57.895 4.18 0.00 0.00 3.01
4860 6460 2.109126 GCTGCGCCGAGAAATTCCT 61.109 57.895 4.18 0.00 0.00 3.36
4861 6461 0.810031 GCTGCGCCGAGAAATTCCTA 60.810 55.000 4.18 0.00 0.00 2.94
4862 6462 1.651987 CTGCGCCGAGAAATTCCTAA 58.348 50.000 4.18 0.00 0.00 2.69
4863 6463 2.006888 CTGCGCCGAGAAATTCCTAAA 58.993 47.619 4.18 0.00 0.00 1.85
4864 6464 2.614057 CTGCGCCGAGAAATTCCTAAAT 59.386 45.455 4.18 0.00 0.00 1.40
4865 6465 3.799366 TGCGCCGAGAAATTCCTAAATA 58.201 40.909 4.18 0.00 0.00 1.40
4866 6466 4.193090 TGCGCCGAGAAATTCCTAAATAA 58.807 39.130 4.18 0.00 0.00 1.40
4867 6467 4.636648 TGCGCCGAGAAATTCCTAAATAAA 59.363 37.500 4.18 0.00 0.00 1.40
4868 6468 4.968181 GCGCCGAGAAATTCCTAAATAAAC 59.032 41.667 0.00 0.00 0.00 2.01
4869 6469 5.195379 CGCCGAGAAATTCCTAAATAAACG 58.805 41.667 0.00 0.00 0.00 3.60
4870 6470 5.220529 CGCCGAGAAATTCCTAAATAAACGT 60.221 40.000 0.00 0.00 0.00 3.99
4871 6471 6.190264 GCCGAGAAATTCCTAAATAAACGTC 58.810 40.000 0.00 0.00 0.00 4.34
4872 6472 6.183360 GCCGAGAAATTCCTAAATAAACGTCA 60.183 38.462 0.00 0.00 0.00 4.35
4873 6473 7.624764 GCCGAGAAATTCCTAAATAAACGTCAA 60.625 37.037 0.00 0.00 0.00 3.18
4874 6474 8.231837 CCGAGAAATTCCTAAATAAACGTCAAA 58.768 33.333 0.00 0.00 0.00 2.69
4875 6475 9.769093 CGAGAAATTCCTAAATAAACGTCAAAT 57.231 29.630 0.00 0.00 0.00 2.32
4881 6481 7.181143 TCCTAAATAAACGTCAAATATCGGC 57.819 36.000 0.00 0.00 0.00 5.54
4882 6482 6.762187 TCCTAAATAAACGTCAAATATCGGCA 59.238 34.615 0.00 0.00 0.00 5.69
4883 6483 7.280428 TCCTAAATAAACGTCAAATATCGGCAA 59.720 33.333 0.00 0.00 0.00 4.52
4884 6484 7.911205 CCTAAATAAACGTCAAATATCGGCAAA 59.089 33.333 0.00 0.00 0.00 3.68
4885 6485 9.445786 CTAAATAAACGTCAAATATCGGCAAAT 57.554 29.630 0.00 0.00 0.00 2.32
4887 6487 9.445786 AAATAAACGTCAAATATCGGCAAATAG 57.554 29.630 0.00 0.00 0.00 1.73
4888 6488 6.431198 AAACGTCAAATATCGGCAAATAGT 57.569 33.333 0.00 0.00 0.00 2.12
4889 6489 5.652744 ACGTCAAATATCGGCAAATAGTC 57.347 39.130 0.00 0.00 0.00 2.59
4896 6496 4.082192 GGCAAATAGTCGACGCGA 57.918 55.556 15.93 0.00 0.00 5.87
4897 6497 2.589890 GGCAAATAGTCGACGCGAT 58.410 52.632 15.93 2.27 38.42 4.58
4898 6498 1.762419 GGCAAATAGTCGACGCGATA 58.238 50.000 15.93 0.00 38.42 2.92
4899 6499 1.714460 GGCAAATAGTCGACGCGATAG 59.286 52.381 15.93 3.07 38.42 2.08
4934 6534 2.953466 TTAGTGTAAGCTAGCCACCG 57.047 50.000 12.13 0.00 0.00 4.94
4935 6535 0.458669 TAGTGTAAGCTAGCCACCGC 59.541 55.000 12.13 5.84 0.00 5.68
4937 6537 0.458669 GTGTAAGCTAGCCACCGCTA 59.541 55.000 12.13 0.00 46.08 4.26
4938 6538 0.458669 TGTAAGCTAGCCACCGCTAC 59.541 55.000 12.13 4.66 46.08 3.58
4939 6539 0.745468 GTAAGCTAGCCACCGCTACT 59.255 55.000 12.13 0.00 46.08 2.57
4940 6540 0.744874 TAAGCTAGCCACCGCTACTG 59.255 55.000 12.13 0.00 46.08 2.74
4941 6541 1.961180 AAGCTAGCCACCGCTACTGG 61.961 60.000 12.13 0.00 46.08 4.00
4942 6542 2.815308 CTAGCCACCGCTACTGGG 59.185 66.667 0.00 0.00 46.08 4.45
4943 6543 3.447025 CTAGCCACCGCTACTGGGC 62.447 68.421 0.00 0.00 46.08 5.36
4951 6551 3.813596 GCTACTGGGCGAATGTGG 58.186 61.111 0.00 0.00 0.00 4.17
4952 6552 1.220749 GCTACTGGGCGAATGTGGA 59.779 57.895 0.00 0.00 0.00 4.02
4953 6553 0.392461 GCTACTGGGCGAATGTGGAA 60.392 55.000 0.00 0.00 0.00 3.53
4954 6554 1.948611 GCTACTGGGCGAATGTGGAAA 60.949 52.381 0.00 0.00 0.00 3.13
4955 6555 2.432444 CTACTGGGCGAATGTGGAAAA 58.568 47.619 0.00 0.00 0.00 2.29
4956 6556 1.923356 ACTGGGCGAATGTGGAAAAT 58.077 45.000 0.00 0.00 0.00 1.82
4957 6557 1.545582 ACTGGGCGAATGTGGAAAATG 59.454 47.619 0.00 0.00 0.00 2.32
4958 6558 1.545582 CTGGGCGAATGTGGAAAATGT 59.454 47.619 0.00 0.00 0.00 2.71
4959 6559 1.271934 TGGGCGAATGTGGAAAATGTG 59.728 47.619 0.00 0.00 0.00 3.21
4960 6560 1.543802 GGGCGAATGTGGAAAATGTGA 59.456 47.619 0.00 0.00 0.00 3.58
4961 6561 2.029470 GGGCGAATGTGGAAAATGTGAA 60.029 45.455 0.00 0.00 0.00 3.18
4962 6562 3.553922 GGGCGAATGTGGAAAATGTGAAA 60.554 43.478 0.00 0.00 0.00 2.69
4963 6563 4.054671 GGCGAATGTGGAAAATGTGAAAA 58.945 39.130 0.00 0.00 0.00 2.29
4964 6564 4.690280 GGCGAATGTGGAAAATGTGAAAAT 59.310 37.500 0.00 0.00 0.00 1.82
4965 6565 5.866633 GGCGAATGTGGAAAATGTGAAAATA 59.133 36.000 0.00 0.00 0.00 1.40
4966 6566 6.183360 GGCGAATGTGGAAAATGTGAAAATAC 60.183 38.462 0.00 0.00 0.00 1.89
4967 6567 6.364706 GCGAATGTGGAAAATGTGAAAATACA 59.635 34.615 0.00 0.00 34.63 2.29
4968 6568 7.095857 GCGAATGTGGAAAATGTGAAAATACAA 60.096 33.333 0.00 0.00 33.69 2.41
4969 6569 8.924691 CGAATGTGGAAAATGTGAAAATACAAT 58.075 29.630 0.00 0.00 33.69 2.71
4972 6572 8.755696 TGTGGAAAATGTGAAAATACAATAGC 57.244 30.769 0.00 0.00 33.69 2.97
4973 6573 8.363390 TGTGGAAAATGTGAAAATACAATAGCA 58.637 29.630 0.00 0.00 33.69 3.49
4974 6574 9.369904 GTGGAAAATGTGAAAATACAATAGCAT 57.630 29.630 0.00 0.00 33.69 3.79
4975 6575 9.368674 TGGAAAATGTGAAAATACAATAGCATG 57.631 29.630 0.00 0.00 33.69 4.06
4976 6576 8.819974 GGAAAATGTGAAAATACAATAGCATGG 58.180 33.333 0.00 0.00 33.69 3.66
4977 6577 9.585099 GAAAATGTGAAAATACAATAGCATGGA 57.415 29.630 0.00 0.00 33.69 3.41
4979 6579 9.537192 AAATGTGAAAATACAATAGCATGGATG 57.463 29.630 0.00 0.00 33.69 3.51
4980 6580 7.878547 TGTGAAAATACAATAGCATGGATGA 57.121 32.000 0.00 0.00 0.00 2.92
4981 6581 8.467963 TGTGAAAATACAATAGCATGGATGAT 57.532 30.769 0.00 0.00 0.00 2.45
4982 6582 8.570488 TGTGAAAATACAATAGCATGGATGATC 58.430 33.333 0.00 0.00 0.00 2.92
4983 6583 7.747799 GTGAAAATACAATAGCATGGATGATCG 59.252 37.037 0.00 0.00 0.00 3.69
4984 6584 5.808042 AATACAATAGCATGGATGATCGC 57.192 39.130 0.00 0.00 0.00 4.58
4985 6585 2.430465 ACAATAGCATGGATGATCGCC 58.570 47.619 0.00 0.00 0.00 5.54
4986 6586 1.395954 CAATAGCATGGATGATCGCCG 59.604 52.381 0.00 0.00 0.00 6.46
4987 6587 0.897621 ATAGCATGGATGATCGCCGA 59.102 50.000 0.00 0.00 0.00 5.54
4988 6588 0.244721 TAGCATGGATGATCGCCGAG 59.755 55.000 0.00 0.00 0.00 4.63
4989 6589 1.301244 GCATGGATGATCGCCGAGT 60.301 57.895 0.00 0.00 0.00 4.18
4990 6590 0.038251 GCATGGATGATCGCCGAGTA 60.038 55.000 0.00 0.00 0.00 2.59
4991 6591 1.702886 CATGGATGATCGCCGAGTAC 58.297 55.000 0.00 0.00 0.00 2.73
4992 6592 0.241213 ATGGATGATCGCCGAGTACG 59.759 55.000 0.00 0.00 39.43 3.67
4993 6593 0.816421 TGGATGATCGCCGAGTACGA 60.816 55.000 0.00 0.00 44.75 3.43
4994 6594 0.385723 GGATGATCGCCGAGTACGAC 60.386 60.000 0.00 0.00 43.23 4.34
4995 6595 0.385723 GATGATCGCCGAGTACGACC 60.386 60.000 0.00 0.00 43.23 4.79
4996 6596 2.052414 GATCGCCGAGTACGACCG 60.052 66.667 0.00 0.00 43.23 4.79
5002 6602 4.189188 CGAGTACGACCGGGCCAG 62.189 72.222 6.32 0.00 42.66 4.85
5003 6603 4.509737 GAGTACGACCGGGCCAGC 62.510 72.222 6.32 0.00 0.00 4.85
5013 6613 4.947147 GGGCCAGCCAACGTGACA 62.947 66.667 11.50 0.00 37.98 3.58
5014 6614 3.660111 GGCCAGCCAACGTGACAC 61.660 66.667 3.12 0.00 35.81 3.67
5024 6624 4.039357 CGTGACACGGGCGTCTCT 62.039 66.667 20.26 0.00 38.08 3.10
5025 6625 2.683859 CGTGACACGGGCGTCTCTA 61.684 63.158 20.26 0.00 38.08 2.43
5026 6626 1.807886 GTGACACGGGCGTCTCTAT 59.192 57.895 0.00 0.00 36.82 1.98
5027 6627 0.525668 GTGACACGGGCGTCTCTATG 60.526 60.000 0.00 0.00 36.82 2.23
5028 6628 1.065928 GACACGGGCGTCTCTATGG 59.934 63.158 0.00 0.00 32.92 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 8.478877 CCTGTCTACTAAAATCAATACAGAGGT 58.521 37.037 0.00 0.00 36.13 3.85
42 43 4.778415 CCTCTGGGTCGCACGACG 62.778 72.222 16.19 3.92 45.41 5.12
46 47 3.655810 CTCTGCCTCTGGGTCGCAC 62.656 68.421 0.00 0.00 34.45 5.34
47 48 3.385384 CTCTGCCTCTGGGTCGCA 61.385 66.667 0.00 0.00 34.45 5.10
49 50 1.544825 TTTCCTCTGCCTCTGGGTCG 61.545 60.000 0.00 0.00 34.45 4.79
51 52 1.376649 AATTTCCTCTGCCTCTGGGT 58.623 50.000 0.00 0.00 34.45 4.51
52 53 2.747799 GCTAATTTCCTCTGCCTCTGGG 60.748 54.545 0.00 0.00 0.00 4.45
53 54 2.570135 GCTAATTTCCTCTGCCTCTGG 58.430 52.381 0.00 0.00 0.00 3.86
55 56 2.111384 TCGCTAATTTCCTCTGCCTCT 58.889 47.619 0.00 0.00 0.00 3.69
56 57 2.604046 TCGCTAATTTCCTCTGCCTC 57.396 50.000 0.00 0.00 0.00 4.70
57 58 2.843701 CATCGCTAATTTCCTCTGCCT 58.156 47.619 0.00 0.00 0.00 4.75
60 61 4.889832 AAAGCATCGCTAATTTCCTCTG 57.110 40.909 0.00 0.00 38.25 3.35
61 62 4.702131 ACAAAAGCATCGCTAATTTCCTCT 59.298 37.500 0.00 0.00 38.25 3.69
62 63 4.795278 CACAAAAGCATCGCTAATTTCCTC 59.205 41.667 0.00 0.00 38.25 3.71
63 64 4.218417 ACACAAAAGCATCGCTAATTTCCT 59.782 37.500 0.00 0.00 38.25 3.36
65 66 5.393962 AGACACAAAAGCATCGCTAATTTC 58.606 37.500 0.00 0.00 38.25 2.17
66 67 5.376854 AGACACAAAAGCATCGCTAATTT 57.623 34.783 0.00 0.00 38.25 1.82
67 68 6.683974 ATAGACACAAAAGCATCGCTAATT 57.316 33.333 0.00 0.00 38.25 1.40
69 70 6.423905 GGATATAGACACAAAAGCATCGCTAA 59.576 38.462 0.00 0.00 38.25 3.09
70 71 5.926542 GGATATAGACACAAAAGCATCGCTA 59.073 40.000 0.00 0.00 38.25 4.26
72 73 4.376413 CGGATATAGACACAAAAGCATCGC 60.376 45.833 0.00 0.00 0.00 4.58
73 74 4.745125 ACGGATATAGACACAAAAGCATCG 59.255 41.667 0.00 0.00 0.00 3.84
74 75 7.709269 TTACGGATATAGACACAAAAGCATC 57.291 36.000 0.00 0.00 0.00 3.91
75 76 7.387948 GGATTACGGATATAGACACAAAAGCAT 59.612 37.037 0.00 0.00 0.00 3.79
76 77 6.704493 GGATTACGGATATAGACACAAAAGCA 59.296 38.462 0.00 0.00 0.00 3.91
79 80 8.916062 TGTAGGATTACGGATATAGACACAAAA 58.084 33.333 0.00 0.00 32.21 2.44
80 81 8.467963 TGTAGGATTACGGATATAGACACAAA 57.532 34.615 0.00 0.00 32.21 2.83
82 83 9.916360 ATATGTAGGATTACGGATATAGACACA 57.084 33.333 0.00 0.00 32.21 3.72
85 86 8.847196 TGCATATGTAGGATTACGGATATAGAC 58.153 37.037 4.29 0.00 32.21 2.59
87 88 8.851145 AGTGCATATGTAGGATTACGGATATAG 58.149 37.037 4.29 0.00 32.21 1.31
88 89 8.762481 AGTGCATATGTAGGATTACGGATATA 57.238 34.615 4.29 0.00 32.21 0.86
89 90 7.201920 GGAGTGCATATGTAGGATTACGGATAT 60.202 40.741 4.29 0.00 32.21 1.63
90 91 6.096423 GGAGTGCATATGTAGGATTACGGATA 59.904 42.308 4.29 0.00 32.21 2.59
91 92 5.105310 GGAGTGCATATGTAGGATTACGGAT 60.105 44.000 4.29 0.00 32.21 4.18
92 93 4.219944 GGAGTGCATATGTAGGATTACGGA 59.780 45.833 4.29 0.00 32.21 4.69
93 94 4.021456 TGGAGTGCATATGTAGGATTACGG 60.021 45.833 4.29 0.00 32.21 4.02
94 95 4.923871 GTGGAGTGCATATGTAGGATTACG 59.076 45.833 4.29 0.00 32.21 3.18
95 96 5.012148 AGGTGGAGTGCATATGTAGGATTAC 59.988 44.000 4.29 0.00 0.00 1.89
96 97 5.155161 AGGTGGAGTGCATATGTAGGATTA 58.845 41.667 4.29 0.00 0.00 1.75
97 98 3.976654 AGGTGGAGTGCATATGTAGGATT 59.023 43.478 4.29 0.00 0.00 3.01
98 99 3.591789 AGGTGGAGTGCATATGTAGGAT 58.408 45.455 4.29 0.00 0.00 3.24
99 100 3.046283 AGGTGGAGTGCATATGTAGGA 57.954 47.619 4.29 0.00 0.00 2.94
100 101 3.305403 CGTAGGTGGAGTGCATATGTAGG 60.305 52.174 4.29 0.00 0.00 3.18
101 102 3.902150 CGTAGGTGGAGTGCATATGTAG 58.098 50.000 4.29 0.00 0.00 2.74
118 119 7.450124 ACTACATCCAACATATAGTCCGTAG 57.550 40.000 0.00 0.00 0.00 3.51
119 120 7.828508 AACTACATCCAACATATAGTCCGTA 57.171 36.000 0.00 0.00 0.00 4.02
120 121 6.726490 AACTACATCCAACATATAGTCCGT 57.274 37.500 0.00 0.00 0.00 4.69
121 122 7.096189 CGAAAACTACATCCAACATATAGTCCG 60.096 40.741 0.00 0.00 0.00 4.79
122 123 7.709613 ACGAAAACTACATCCAACATATAGTCC 59.290 37.037 0.00 0.00 0.00 3.85
123 124 8.644318 ACGAAAACTACATCCAACATATAGTC 57.356 34.615 0.00 0.00 0.00 2.59
127 128 9.221933 TGTTTACGAAAACTACATCCAACATAT 57.778 29.630 0.00 0.00 44.44 1.78
128 129 8.604640 TGTTTACGAAAACTACATCCAACATA 57.395 30.769 0.00 0.00 44.44 2.29
150 156 8.466617 AGCTTGCACTATAGTAGTACTATGTT 57.533 34.615 26.48 13.92 41.23 2.71
189 202 3.763897 GGCACCACTTTTGTATGGATCTT 59.236 43.478 0.00 0.00 39.46 2.40
240 257 2.434185 GTCATCAACCGGAGCGCA 60.434 61.111 9.46 0.00 0.00 6.09
256 273 7.455641 TTCGTTTATAATGATTGGTTGTGGT 57.544 32.000 0.00 0.00 0.00 4.16
278 303 7.739295 TCGCTCACTGTCAAAGTAATTAATTC 58.261 34.615 3.39 0.00 36.83 2.17
355 380 2.435938 TTCGTGATGAAGGCCGCC 60.436 61.111 0.00 0.00 31.44 6.13
459 500 4.024143 GTGCATGCACGTTCGGCA 62.024 61.111 33.20 1.18 46.66 5.69
493 534 2.821366 CTGTCGGTGATGCAGGGC 60.821 66.667 0.00 0.00 0.00 5.19
537 580 2.436087 AAAGCAGTCCGTCCGTCTGG 62.436 60.000 9.77 0.00 0.00 3.86
697 750 2.028484 GGAACTGCCGTGTGTCGA 59.972 61.111 0.00 0.00 42.86 4.20
772 832 2.358737 GAAGGTGCCGTGGAGGTG 60.359 66.667 0.00 0.00 43.70 4.00
773 833 2.526873 AGAAGGTGCCGTGGAGGT 60.527 61.111 0.00 0.00 43.70 3.85
775 835 0.390472 GAAGAGAAGGTGCCGTGGAG 60.390 60.000 0.00 0.00 0.00 3.86
776 836 0.832135 AGAAGAGAAGGTGCCGTGGA 60.832 55.000 0.00 0.00 0.00 4.02
781 841 0.108567 GACGGAGAAGAGAAGGTGCC 60.109 60.000 0.00 0.00 0.00 5.01
782 842 0.603569 TGACGGAGAAGAGAAGGTGC 59.396 55.000 0.00 0.00 0.00 5.01
947 1050 2.560151 CGTTGACGAGCGAGCGATC 61.560 63.158 0.00 0.00 43.02 3.69
948 1051 2.577112 CGTTGACGAGCGAGCGAT 60.577 61.111 0.00 0.00 43.02 4.58
949 1052 3.923356 GACGTTGACGAGCGAGCGA 62.923 63.158 10.87 0.00 43.02 4.93
952 1055 2.138601 GTCGACGTTGACGAGCGAG 61.139 63.158 19.79 4.99 44.46 5.03
1047 1150 1.065410 TGGGAGGCTTCTGGGTGAAA 61.065 55.000 0.00 0.00 33.79 2.69
1051 1154 2.539081 GGTTGGGAGGCTTCTGGGT 61.539 63.158 0.00 0.00 0.00 4.51
1187 1311 2.108566 CCTCCATCGGCTGCTGAG 59.891 66.667 17.21 8.80 0.00 3.35
1188 1312 4.166888 GCCTCCATCGGCTGCTGA 62.167 66.667 14.42 14.42 46.63 4.26
1552 1885 2.675348 GAGTATGAAGACAAGCAGGTGC 59.325 50.000 0.00 0.00 42.49 5.01
1582 1925 6.210287 TGTACCGAAACTGAACCAAAATTT 57.790 33.333 0.00 0.00 0.00 1.82
1636 1981 5.491070 TCATCAATAACTGTCTTGTGGAGG 58.509 41.667 3.84 0.00 0.00 4.30
1648 1993 5.109210 TCAACGCGAATCTCATCAATAACT 58.891 37.500 15.93 0.00 0.00 2.24
1649 1994 5.232202 TCTCAACGCGAATCTCATCAATAAC 59.768 40.000 15.93 0.00 0.00 1.89
1650 1995 5.232202 GTCTCAACGCGAATCTCATCAATAA 59.768 40.000 15.93 0.00 0.00 1.40
1651 1996 4.740205 GTCTCAACGCGAATCTCATCAATA 59.260 41.667 15.93 0.00 0.00 1.90
1652 1997 3.553511 GTCTCAACGCGAATCTCATCAAT 59.446 43.478 15.93 0.00 0.00 2.57
1653 1998 2.923655 GTCTCAACGCGAATCTCATCAA 59.076 45.455 15.93 0.00 0.00 2.57
1654 1999 2.164422 AGTCTCAACGCGAATCTCATCA 59.836 45.455 15.93 0.00 0.00 3.07
1655 2000 2.803451 AGTCTCAACGCGAATCTCATC 58.197 47.619 15.93 0.00 0.00 2.92
1656 2001 2.949451 AGTCTCAACGCGAATCTCAT 57.051 45.000 15.93 0.00 0.00 2.90
1657 2002 2.030274 TGAAGTCTCAACGCGAATCTCA 60.030 45.455 15.93 1.13 0.00 3.27
1658 2003 2.596419 CTGAAGTCTCAACGCGAATCTC 59.404 50.000 15.93 0.00 0.00 2.75
1659 2004 2.229062 TCTGAAGTCTCAACGCGAATCT 59.771 45.455 15.93 0.00 0.00 2.40
1660 2005 2.596419 CTCTGAAGTCTCAACGCGAATC 59.404 50.000 15.93 0.00 0.00 2.52
1661 2006 2.029828 ACTCTGAAGTCTCAACGCGAAT 60.030 45.455 15.93 0.00 0.00 3.34
1662 2007 1.337071 ACTCTGAAGTCTCAACGCGAA 59.663 47.619 15.93 0.00 0.00 4.70
1663 2008 0.952280 ACTCTGAAGTCTCAACGCGA 59.048 50.000 15.93 0.00 0.00 5.87
1664 2009 1.772182 AACTCTGAAGTCTCAACGCG 58.228 50.000 3.53 3.53 33.48 6.01
1665 2010 4.547532 TCTAAACTCTGAAGTCTCAACGC 58.452 43.478 0.00 0.00 33.48 4.84
1666 2011 6.210078 ACTTCTAAACTCTGAAGTCTCAACG 58.790 40.000 0.00 0.00 46.70 4.10
1720 2065 3.055167 GGATCCAAAAACCAATTCCCCAG 60.055 47.826 6.95 0.00 0.00 4.45
1767 2112 2.874701 CAATCCGTCCAGAGCCATAAAG 59.125 50.000 0.00 0.00 0.00 1.85
1783 2132 3.012518 CAGTGGTCAACATCCTCAATCC 58.987 50.000 0.00 0.00 0.00 3.01
1860 2216 7.169982 CGCTCTTATATTTGTTTACAGAGGGAG 59.830 40.741 4.76 0.00 36.40 4.30
1901 2257 6.016693 GTCCCTTAATTACTACGTACTCCCTC 60.017 46.154 0.00 0.00 0.00 4.30
1910 2266 6.860080 TGTTGAGAGTCCCTTAATTACTACG 58.140 40.000 0.00 0.00 0.00 3.51
1911 2267 9.498176 TTTTGTTGAGAGTCCCTTAATTACTAC 57.502 33.333 0.00 0.00 0.00 2.73
1912 2268 9.720769 CTTTTGTTGAGAGTCCCTTAATTACTA 57.279 33.333 0.00 0.00 0.00 1.82
1913 2269 7.175119 GCTTTTGTTGAGAGTCCCTTAATTACT 59.825 37.037 0.00 0.00 0.00 2.24
2148 2798 2.555757 CTCTGGCCTTTGTTGGAGAAAG 59.444 50.000 3.32 0.00 0.00 2.62
2504 3232 4.319333 GCATCCAAGATAAATGAGCAGTCG 60.319 45.833 0.00 0.00 0.00 4.18
2631 3845 5.947228 AGAAACACCATACAACATCACAG 57.053 39.130 0.00 0.00 0.00 3.66
2675 3900 2.820197 GTCACTCCCATTTCTGAAACCC 59.180 50.000 4.73 0.00 0.00 4.11
2932 4180 5.450412 CCATACCACCAATCATAAGTGCAAC 60.450 44.000 0.00 0.00 0.00 4.17
3024 4272 2.768698 TGCAGGGAATTTGCACAATTG 58.231 42.857 3.24 3.24 45.89 2.32
3094 4458 9.658799 CATCATTTCTAGTTTGAACTTCCTAGA 57.341 33.333 1.20 0.00 40.37 2.43
3132 4496 5.957771 TCTGACAGGCATAAGGTCTAAAT 57.042 39.130 1.81 0.00 32.84 1.40
3133 4497 5.425217 TGATCTGACAGGCATAAGGTCTAAA 59.575 40.000 1.81 0.00 32.84 1.85
3134 4498 4.962362 TGATCTGACAGGCATAAGGTCTAA 59.038 41.667 1.81 0.00 32.84 2.10
3174 4538 6.816134 AAAACTGCAACCACAAAAGAAAAT 57.184 29.167 0.00 0.00 0.00 1.82
3176 4540 7.604164 TCAATAAAACTGCAACCACAAAAGAAA 59.396 29.630 0.00 0.00 0.00 2.52
3239 4613 6.763715 AGAATACCTTCATAGCCACCATAA 57.236 37.500 0.00 0.00 33.56 1.90
3242 4616 5.903010 TCTTAGAATACCTTCATAGCCACCA 59.097 40.000 0.00 0.00 33.56 4.17
3263 4637 9.520515 AATTGTAGATGTACAGGATTTTGTCTT 57.479 29.630 0.33 0.00 40.33 3.01
3333 4736 6.701400 GGCATTACATGAAAACAAACTGAACT 59.299 34.615 0.00 0.00 0.00 3.01
3334 4737 6.478344 TGGCATTACATGAAAACAAACTGAAC 59.522 34.615 0.00 0.00 0.00 3.18
3376 4805 5.186996 ACAGCACATCAAAAACGAAATCT 57.813 34.783 0.00 0.00 0.00 2.40
3377 4806 5.888412 AACAGCACATCAAAAACGAAATC 57.112 34.783 0.00 0.00 0.00 2.17
3378 4807 6.503524 AGTAACAGCACATCAAAAACGAAAT 58.496 32.000 0.00 0.00 0.00 2.17
3380 4809 5.493133 AGTAACAGCACATCAAAAACGAA 57.507 34.783 0.00 0.00 0.00 3.85
3382 4811 5.034152 ACAAGTAACAGCACATCAAAAACG 58.966 37.500 0.00 0.00 0.00 3.60
3383 4812 6.033341 TGACAAGTAACAGCACATCAAAAAC 58.967 36.000 0.00 0.00 0.00 2.43
3384 4813 6.127758 ACTGACAAGTAACAGCACATCAAAAA 60.128 34.615 0.00 0.00 37.61 1.94
3385 4814 5.356751 ACTGACAAGTAACAGCACATCAAAA 59.643 36.000 0.00 0.00 37.61 2.44
3386 4815 4.881273 ACTGACAAGTAACAGCACATCAAA 59.119 37.500 0.00 0.00 37.61 2.69
3387 4816 4.450976 ACTGACAAGTAACAGCACATCAA 58.549 39.130 0.00 0.00 37.61 2.57
3388 4817 4.071961 ACTGACAAGTAACAGCACATCA 57.928 40.909 0.00 0.00 37.61 3.07
3389 4818 4.273480 ACAACTGACAAGTAACAGCACATC 59.727 41.667 0.00 0.00 34.77 3.06
3392 4821 4.616181 AACAACTGACAAGTAACAGCAC 57.384 40.909 0.00 0.00 34.77 4.40
3419 4848 9.762933 GGAATGGCAGCATAAAAATTCTTAATA 57.237 29.630 0.00 0.00 0.00 0.98
3421 4850 6.756074 CGGAATGGCAGCATAAAAATTCTTAA 59.244 34.615 0.00 0.00 0.00 1.85
3575 5009 2.342179 GAAGTACAGGCAAGAGAGCAC 58.658 52.381 0.00 0.00 35.83 4.40
3584 5018 2.565834 GGTAAGACAGGAAGTACAGGCA 59.434 50.000 0.00 0.00 0.00 4.75
3595 5030 6.264744 TGATAATAGAAGTCGGGTAAGACAGG 59.735 42.308 0.00 0.00 43.24 4.00
3665 5100 5.667539 TGTTGTCCAAATGAAGAAAACCA 57.332 34.783 0.00 0.00 0.00 3.67
3671 5106 7.773489 TCCATTATTGTTGTCCAAATGAAGA 57.227 32.000 0.00 0.00 36.44 2.87
3718 5153 2.426522 TCTTCAGGAAATGGCAGTTCG 58.573 47.619 19.93 8.66 0.00 3.95
3767 5316 9.127277 GGCTATATTTTTAGGTGACCACAATAA 57.873 33.333 3.63 0.00 0.00 1.40
3807 5356 0.833409 TGCAGCTCCAGAGTCCAGAA 60.833 55.000 0.00 0.00 0.00 3.02
3809 5358 1.218585 CTGCAGCTCCAGAGTCCAG 59.781 63.158 0.00 0.00 34.77 3.86
3812 5361 2.028567 AGTTTACTGCAGCTCCAGAGTC 60.029 50.000 12.78 0.00 36.67 3.36
3813 5362 1.974236 AGTTTACTGCAGCTCCAGAGT 59.026 47.619 12.78 0.01 36.67 3.24
3818 5367 5.863935 CCAAATTTAAGTTTACTGCAGCTCC 59.136 40.000 15.27 0.00 0.00 4.70
3842 5399 2.860735 CCACGTAAAGCTATCTGACAGC 59.139 50.000 0.00 0.00 39.41 4.40
3853 5410 1.134670 AGATGAGAGGCCACGTAAAGC 60.135 52.381 5.01 0.00 0.00 3.51
3860 5417 2.038164 TCATGCATAGATGAGAGGCCAC 59.962 50.000 5.01 0.00 0.00 5.01
3912 5478 7.898946 GGCAACTCTTGTGCATATTTTTATTC 58.101 34.615 0.00 0.00 0.00 1.75
3977 5543 9.128404 TGTATACCTGTTTAGACATAGTACCAG 57.872 37.037 0.00 0.00 34.72 4.00
4018 5584 4.394920 GCGTTAACCATCTTCATTTCTGGA 59.605 41.667 0.00 0.00 32.92 3.86
4051 5617 5.084519 TGATATGCTCTATAAACCCGGAGT 58.915 41.667 0.73 0.00 0.00 3.85
4065 5637 2.141517 ACTGAATGCGCTGATATGCTC 58.858 47.619 9.73 0.00 0.00 4.26
4192 5771 3.842869 GGCCTCACAGGACTTACAG 57.157 57.895 0.00 0.00 41.45 2.74
4239 5818 0.603975 AAGCTGCCCTTCTGAACGTC 60.604 55.000 0.00 0.00 0.00 4.34
4309 5888 9.768215 TTATTCCAGGAAAATACAAAGGAGAAT 57.232 29.630 5.81 0.00 0.00 2.40
4326 5906 3.117738 AGGGCAGTCTCATTTATTCCAGG 60.118 47.826 0.00 0.00 0.00 4.45
4369 5949 4.619973 TGAGAAACATGGAAATGCACAAC 58.380 39.130 0.00 0.00 0.00 3.32
4445 6025 1.297451 GCTCGTAGCCTCGTACACG 60.297 63.158 0.00 0.00 34.48 4.49
4469 6049 2.590092 CTCCCGGCCCTTCGAAAT 59.410 61.111 0.00 0.00 0.00 2.17
4480 6060 1.141053 CAAGAAGTAATCCCCTCCCGG 59.859 57.143 0.00 0.00 0.00 5.73
4481 6061 1.475213 GCAAGAAGTAATCCCCTCCCG 60.475 57.143 0.00 0.00 0.00 5.14
4519 6102 7.928908 TCACACAATCTTCAATTTAGCAAAC 57.071 32.000 0.00 0.00 0.00 2.93
4637 6237 5.374071 TCGTAGCCTCTGATACTGATAACA 58.626 41.667 0.00 0.00 31.12 2.41
4648 6248 1.078356 AGACGCTCGTAGCCTCTGA 60.078 57.895 0.00 0.00 35.72 3.27
4659 6259 0.246912 CGCATCAAAACGAGACGCTC 60.247 55.000 0.00 0.00 0.00 5.03
4660 6260 0.944311 ACGCATCAAAACGAGACGCT 60.944 50.000 0.00 0.00 30.95 5.07
4661 6261 0.516524 GACGCATCAAAACGAGACGC 60.517 55.000 0.00 0.00 30.95 5.19
4662 6262 0.781787 TGACGCATCAAAACGAGACG 59.218 50.000 0.00 0.00 33.35 4.18
4663 6263 2.058798 TCTGACGCATCAAAACGAGAC 58.941 47.619 0.00 0.00 33.30 3.36
4664 6264 2.328473 CTCTGACGCATCAAAACGAGA 58.672 47.619 0.00 0.00 33.30 4.04
4665 6265 1.391485 CCTCTGACGCATCAAAACGAG 59.609 52.381 0.00 0.00 33.30 4.18
4666 6266 1.270094 ACCTCTGACGCATCAAAACGA 60.270 47.619 0.00 0.00 33.30 3.85
4667 6267 1.136252 CACCTCTGACGCATCAAAACG 60.136 52.381 0.00 0.00 33.30 3.60
4668 6268 1.400242 GCACCTCTGACGCATCAAAAC 60.400 52.381 0.00 0.00 33.30 2.43
4669 6269 0.874390 GCACCTCTGACGCATCAAAA 59.126 50.000 0.00 0.00 33.30 2.44
4670 6270 0.035317 AGCACCTCTGACGCATCAAA 59.965 50.000 0.00 0.00 33.30 2.69
4671 6271 0.035317 AAGCACCTCTGACGCATCAA 59.965 50.000 0.00 0.00 33.30 2.57
4672 6272 0.035317 AAAGCACCTCTGACGCATCA 59.965 50.000 0.00 0.00 0.00 3.07
4673 6273 0.445436 CAAAGCACCTCTGACGCATC 59.555 55.000 0.00 0.00 0.00 3.91
4674 6274 1.580845 GCAAAGCACCTCTGACGCAT 61.581 55.000 0.00 0.00 0.00 4.73
4675 6275 2.253758 GCAAAGCACCTCTGACGCA 61.254 57.895 0.00 0.00 0.00 5.24
4676 6276 1.510480 AAGCAAAGCACCTCTGACGC 61.510 55.000 0.00 0.00 0.00 5.19
4677 6277 1.728971 CTAAGCAAAGCACCTCTGACG 59.271 52.381 0.00 0.00 0.00 4.35
4678 6278 2.999355 CTCTAAGCAAAGCACCTCTGAC 59.001 50.000 0.00 0.00 0.00 3.51
4679 6279 2.027745 CCTCTAAGCAAAGCACCTCTGA 60.028 50.000 0.00 0.00 0.00 3.27
4680 6280 2.027745 TCCTCTAAGCAAAGCACCTCTG 60.028 50.000 0.00 0.00 0.00 3.35
4681 6281 2.260822 TCCTCTAAGCAAAGCACCTCT 58.739 47.619 0.00 0.00 0.00 3.69
4682 6282 2.770164 TCCTCTAAGCAAAGCACCTC 57.230 50.000 0.00 0.00 0.00 3.85
4683 6283 3.149981 GTTTCCTCTAAGCAAAGCACCT 58.850 45.455 0.00 0.00 0.00 4.00
4684 6284 3.057946 CAGTTTCCTCTAAGCAAAGCACC 60.058 47.826 0.00 0.00 0.00 5.01
4685 6285 3.565902 ACAGTTTCCTCTAAGCAAAGCAC 59.434 43.478 0.00 0.00 0.00 4.40
4686 6286 3.820557 ACAGTTTCCTCTAAGCAAAGCA 58.179 40.909 0.00 0.00 0.00 3.91
4687 6287 5.941948 TTACAGTTTCCTCTAAGCAAAGC 57.058 39.130 0.00 0.00 0.00 3.51
4688 6288 7.497925 AGTTTACAGTTTCCTCTAAGCAAAG 57.502 36.000 0.00 0.00 0.00 2.77
4689 6289 7.172703 GCTAGTTTACAGTTTCCTCTAAGCAAA 59.827 37.037 0.00 0.00 0.00 3.68
4690 6290 6.649557 GCTAGTTTACAGTTTCCTCTAAGCAA 59.350 38.462 0.00 0.00 0.00 3.91
4691 6291 6.164176 GCTAGTTTACAGTTTCCTCTAAGCA 58.836 40.000 0.00 0.00 0.00 3.91
4692 6292 6.164176 TGCTAGTTTACAGTTTCCTCTAAGC 58.836 40.000 0.00 0.00 0.00 3.09
4693 6293 8.603242 TTTGCTAGTTTACAGTTTCCTCTAAG 57.397 34.615 0.00 0.00 0.00 2.18
4694 6294 9.569122 AATTTGCTAGTTTACAGTTTCCTCTAA 57.431 29.630 0.00 0.00 0.00 2.10
4698 6298 9.515226 TGATAATTTGCTAGTTTACAGTTTCCT 57.485 29.630 0.00 0.00 0.00 3.36
4711 6311 7.082602 GGCTGATGTCAATGATAATTTGCTAG 58.917 38.462 0.00 0.00 0.00 3.42
4725 6325 4.321156 CCATTCTTTTTCGGCTGATGTCAA 60.321 41.667 0.00 0.00 0.00 3.18
4726 6326 3.191162 CCATTCTTTTTCGGCTGATGTCA 59.809 43.478 0.00 0.00 0.00 3.58
4727 6327 3.428045 CCCATTCTTTTTCGGCTGATGTC 60.428 47.826 0.00 0.00 0.00 3.06
4728 6328 2.493278 CCCATTCTTTTTCGGCTGATGT 59.507 45.455 0.00 0.00 0.00 3.06
4729 6329 2.754552 TCCCATTCTTTTTCGGCTGATG 59.245 45.455 0.00 0.00 0.00 3.07
4730 6330 3.085952 TCCCATTCTTTTTCGGCTGAT 57.914 42.857 0.00 0.00 0.00 2.90
4731 6331 2.577606 TCCCATTCTTTTTCGGCTGA 57.422 45.000 0.00 0.00 0.00 4.26
4732 6332 3.658757 TTTCCCATTCTTTTTCGGCTG 57.341 42.857 0.00 0.00 0.00 4.85
4733 6333 3.895041 TCTTTTCCCATTCTTTTTCGGCT 59.105 39.130 0.00 0.00 0.00 5.52
4734 6334 4.251543 TCTTTTCCCATTCTTTTTCGGC 57.748 40.909 0.00 0.00 0.00 5.54
4735 6335 8.708742 GTTTTATCTTTTCCCATTCTTTTTCGG 58.291 33.333 0.00 0.00 0.00 4.30
4736 6336 9.255304 TGTTTTATCTTTTCCCATTCTTTTTCG 57.745 29.630 0.00 0.00 0.00 3.46
4772 6372 2.825836 GATTCCCGGCTGGTGCAG 60.826 66.667 11.58 0.00 41.91 4.41
4846 6446 5.195379 CGTTTATTTAGGAATTTCTCGGCG 58.805 41.667 0.00 0.00 0.00 6.46
4847 6447 6.115450 ACGTTTATTTAGGAATTTCTCGGC 57.885 37.500 0.00 0.00 0.00 5.54
4848 6448 7.298507 TGACGTTTATTTAGGAATTTCTCGG 57.701 36.000 0.00 0.00 0.00 4.63
4849 6449 9.769093 ATTTGACGTTTATTTAGGAATTTCTCG 57.231 29.630 0.00 0.00 0.00 4.04
4855 6455 8.287503 GCCGATATTTGACGTTTATTTAGGAAT 58.712 33.333 0.00 0.00 0.00 3.01
4856 6456 7.280428 TGCCGATATTTGACGTTTATTTAGGAA 59.720 33.333 0.00 0.00 0.00 3.36
4857 6457 6.762187 TGCCGATATTTGACGTTTATTTAGGA 59.238 34.615 0.00 0.00 0.00 2.94
4858 6458 6.950545 TGCCGATATTTGACGTTTATTTAGG 58.049 36.000 0.00 0.00 0.00 2.69
4859 6459 8.829514 TTTGCCGATATTTGACGTTTATTTAG 57.170 30.769 0.00 0.00 0.00 1.85
4861 6461 9.445786 CTATTTGCCGATATTTGACGTTTATTT 57.554 29.630 0.00 0.00 0.00 1.40
4862 6462 8.617809 ACTATTTGCCGATATTTGACGTTTATT 58.382 29.630 0.00 0.00 0.00 1.40
4863 6463 8.149973 ACTATTTGCCGATATTTGACGTTTAT 57.850 30.769 0.00 0.00 0.00 1.40
4864 6464 7.515528 CGACTATTTGCCGATATTTGACGTTTA 60.516 37.037 0.00 0.00 0.00 2.01
4865 6465 6.431198 ACTATTTGCCGATATTTGACGTTT 57.569 33.333 0.00 0.00 0.00 3.60
4866 6466 5.276678 CGACTATTTGCCGATATTTGACGTT 60.277 40.000 0.00 0.00 0.00 3.99
4867 6467 4.208460 CGACTATTTGCCGATATTTGACGT 59.792 41.667 0.00 0.00 0.00 4.34
4868 6468 4.443063 TCGACTATTTGCCGATATTTGACG 59.557 41.667 0.00 0.00 0.00 4.35
4869 6469 5.609696 CGTCGACTATTTGCCGATATTTGAC 60.610 44.000 14.70 5.03 32.32 3.18
4870 6470 4.443063 CGTCGACTATTTGCCGATATTTGA 59.557 41.667 14.70 0.00 32.32 2.69
4871 6471 4.688063 CGTCGACTATTTGCCGATATTTG 58.312 43.478 14.70 0.00 32.32 2.32
4872 6472 3.183775 GCGTCGACTATTTGCCGATATTT 59.816 43.478 14.70 0.00 32.32 1.40
4873 6473 2.729882 GCGTCGACTATTTGCCGATATT 59.270 45.455 14.70 0.00 32.32 1.28
4874 6474 2.325761 GCGTCGACTATTTGCCGATAT 58.674 47.619 14.70 0.00 32.32 1.63
4875 6475 1.762419 GCGTCGACTATTTGCCGATA 58.238 50.000 14.70 0.00 32.32 2.92
4876 6476 1.206745 CGCGTCGACTATTTGCCGAT 61.207 55.000 14.70 0.00 32.32 4.18
4877 6477 1.870458 CGCGTCGACTATTTGCCGA 60.870 57.895 14.70 0.00 0.00 5.54
4878 6478 1.206745 ATCGCGTCGACTATTTGCCG 61.207 55.000 14.70 6.04 39.18 5.69
4879 6479 1.714460 CTATCGCGTCGACTATTTGCC 59.286 52.381 14.70 0.00 39.18 4.52
4880 6480 1.122680 GCTATCGCGTCGACTATTTGC 59.877 52.381 14.70 8.15 39.18 3.68
4881 6481 1.714460 GGCTATCGCGTCGACTATTTG 59.286 52.381 14.70 0.00 39.18 2.32
4882 6482 1.335810 TGGCTATCGCGTCGACTATTT 59.664 47.619 14.70 0.00 39.18 1.40
4883 6483 0.949397 TGGCTATCGCGTCGACTATT 59.051 50.000 14.70 0.00 39.18 1.73
4884 6484 0.237761 GTGGCTATCGCGTCGACTAT 59.762 55.000 14.70 7.04 39.18 2.12
4885 6485 1.645455 GTGGCTATCGCGTCGACTA 59.355 57.895 14.70 0.00 39.18 2.59
4886 6486 2.408022 GTGGCTATCGCGTCGACT 59.592 61.111 14.70 0.00 39.18 4.18
4887 6487 2.654404 GGTGGCTATCGCGTCGAC 60.654 66.667 5.77 5.18 39.18 4.20
4888 6488 3.135457 TGGTGGCTATCGCGTCGA 61.135 61.111 5.77 4.51 41.13 4.20
4889 6489 2.954868 GTGGTGGCTATCGCGTCG 60.955 66.667 5.77 0.00 36.88 5.12
4890 6490 1.589196 GAGTGGTGGCTATCGCGTC 60.589 63.158 5.77 0.00 36.88 5.19
4891 6491 1.605058 AAGAGTGGTGGCTATCGCGT 61.605 55.000 5.77 0.00 36.88 6.01
4892 6492 0.460284 AAAGAGTGGTGGCTATCGCG 60.460 55.000 0.00 0.00 36.88 5.87
4893 6493 1.739067 AAAAGAGTGGTGGCTATCGC 58.261 50.000 0.00 0.00 0.00 4.58
4912 6512 3.998341 CGGTGGCTAGCTTACACTAAAAA 59.002 43.478 15.72 0.00 35.53 1.94
4913 6513 3.592059 CGGTGGCTAGCTTACACTAAAA 58.408 45.455 15.72 0.00 35.53 1.52
4914 6514 2.675889 GCGGTGGCTAGCTTACACTAAA 60.676 50.000 15.72 0.00 35.53 1.85
4915 6515 1.134907 GCGGTGGCTAGCTTACACTAA 60.135 52.381 15.72 0.00 35.53 2.24
4916 6516 0.458669 GCGGTGGCTAGCTTACACTA 59.541 55.000 15.72 0.00 35.53 2.74
4917 6517 1.218316 GCGGTGGCTAGCTTACACT 59.782 57.895 15.72 0.00 35.53 3.55
4918 6518 3.795638 GCGGTGGCTAGCTTACAC 58.204 61.111 15.72 13.90 35.83 2.90
4934 6534 0.392461 TTCCACATTCGCCCAGTAGC 60.392 55.000 0.00 0.00 0.00 3.58
4935 6535 2.107950 TTTCCACATTCGCCCAGTAG 57.892 50.000 0.00 0.00 0.00 2.57
4936 6536 2.570415 TTTTCCACATTCGCCCAGTA 57.430 45.000 0.00 0.00 0.00 2.74
4937 6537 1.545582 CATTTTCCACATTCGCCCAGT 59.454 47.619 0.00 0.00 0.00 4.00
4938 6538 1.545582 ACATTTTCCACATTCGCCCAG 59.454 47.619 0.00 0.00 0.00 4.45
4939 6539 1.271934 CACATTTTCCACATTCGCCCA 59.728 47.619 0.00 0.00 0.00 5.36
4940 6540 1.543802 TCACATTTTCCACATTCGCCC 59.456 47.619 0.00 0.00 0.00 6.13
4941 6541 3.296322 TTCACATTTTCCACATTCGCC 57.704 42.857 0.00 0.00 0.00 5.54
4942 6542 5.844301 ATTTTCACATTTTCCACATTCGC 57.156 34.783 0.00 0.00 0.00 4.70
4943 6543 7.865875 TGTATTTTCACATTTTCCACATTCG 57.134 32.000 0.00 0.00 0.00 3.34
4946 6546 9.369904 GCTATTGTATTTTCACATTTTCCACAT 57.630 29.630 0.00 0.00 0.00 3.21
4947 6547 8.363390 TGCTATTGTATTTTCACATTTTCCACA 58.637 29.630 0.00 0.00 0.00 4.17
4948 6548 8.755696 TGCTATTGTATTTTCACATTTTCCAC 57.244 30.769 0.00 0.00 0.00 4.02
4949 6549 9.368674 CATGCTATTGTATTTTCACATTTTCCA 57.631 29.630 0.00 0.00 0.00 3.53
4950 6550 8.819974 CCATGCTATTGTATTTTCACATTTTCC 58.180 33.333 0.00 0.00 0.00 3.13
4951 6551 9.585099 TCCATGCTATTGTATTTTCACATTTTC 57.415 29.630 0.00 0.00 0.00 2.29
4953 6553 9.537192 CATCCATGCTATTGTATTTTCACATTT 57.463 29.630 0.00 0.00 0.00 2.32
4954 6554 8.916062 TCATCCATGCTATTGTATTTTCACATT 58.084 29.630 0.00 0.00 0.00 2.71
4955 6555 8.467963 TCATCCATGCTATTGTATTTTCACAT 57.532 30.769 0.00 0.00 0.00 3.21
4956 6556 7.878547 TCATCCATGCTATTGTATTTTCACA 57.121 32.000 0.00 0.00 0.00 3.58
4957 6557 7.747799 CGATCATCCATGCTATTGTATTTTCAC 59.252 37.037 0.00 0.00 0.00 3.18
4958 6558 7.573656 GCGATCATCCATGCTATTGTATTTTCA 60.574 37.037 0.00 0.00 0.00 2.69
4959 6559 6.744537 GCGATCATCCATGCTATTGTATTTTC 59.255 38.462 0.00 0.00 0.00 2.29
4960 6560 6.349611 GGCGATCATCCATGCTATTGTATTTT 60.350 38.462 0.00 0.00 0.00 1.82
4961 6561 5.124457 GGCGATCATCCATGCTATTGTATTT 59.876 40.000 0.00 0.00 0.00 1.40
4962 6562 4.637534 GGCGATCATCCATGCTATTGTATT 59.362 41.667 0.00 0.00 0.00 1.89
4963 6563 4.194640 GGCGATCATCCATGCTATTGTAT 58.805 43.478 0.00 0.00 0.00 2.29
4964 6564 3.599343 GGCGATCATCCATGCTATTGTA 58.401 45.455 0.00 0.00 0.00 2.41
4965 6565 2.430465 GGCGATCATCCATGCTATTGT 58.570 47.619 0.00 0.00 0.00 2.71
4966 6566 1.395954 CGGCGATCATCCATGCTATTG 59.604 52.381 0.00 0.00 0.00 1.90
4967 6567 1.276138 TCGGCGATCATCCATGCTATT 59.724 47.619 4.99 0.00 0.00 1.73
4968 6568 0.897621 TCGGCGATCATCCATGCTAT 59.102 50.000 4.99 0.00 0.00 2.97
4969 6569 0.244721 CTCGGCGATCATCCATGCTA 59.755 55.000 11.27 0.00 0.00 3.49
4970 6570 1.005275 CTCGGCGATCATCCATGCT 60.005 57.895 11.27 0.00 0.00 3.79
4971 6571 0.038251 TACTCGGCGATCATCCATGC 60.038 55.000 11.27 0.00 0.00 4.06
4972 6572 1.702886 GTACTCGGCGATCATCCATG 58.297 55.000 11.27 0.00 0.00 3.66
4973 6573 0.241213 CGTACTCGGCGATCATCCAT 59.759 55.000 11.27 0.00 0.00 3.41
4974 6574 0.816421 TCGTACTCGGCGATCATCCA 60.816 55.000 11.27 0.00 37.69 3.41
4975 6575 0.385723 GTCGTACTCGGCGATCATCC 60.386 60.000 11.27 0.00 40.59 3.51
4976 6576 0.385723 GGTCGTACTCGGCGATCATC 60.386 60.000 11.27 0.62 43.10 2.92
4977 6577 1.653115 GGTCGTACTCGGCGATCAT 59.347 57.895 11.27 1.34 43.10 2.45
4978 6578 2.816360 CGGTCGTACTCGGCGATCA 61.816 63.158 11.27 0.00 43.10 2.92
4979 6579 2.052414 CGGTCGTACTCGGCGATC 60.052 66.667 11.27 3.33 43.10 3.69
4980 6580 3.580193 CCGGTCGTACTCGGCGAT 61.580 66.667 11.27 3.37 43.10 4.58
4985 6585 4.189188 CTGGCCCGGTCGTACTCG 62.189 72.222 0.00 0.00 38.55 4.18
4986 6586 4.509737 GCTGGCCCGGTCGTACTC 62.510 72.222 0.00 0.00 0.00 2.59
4996 6596 4.947147 TGTCACGTTGGCTGGCCC 62.947 66.667 9.28 0.00 34.56 5.80
4997 6597 3.660111 GTGTCACGTTGGCTGGCC 61.660 66.667 4.43 4.43 0.00 5.36
4998 6598 4.012895 CGTGTCACGTTGGCTGGC 62.013 66.667 17.30 0.00 36.74 4.85
4999 6599 3.345808 CCGTGTCACGTTGGCTGG 61.346 66.667 23.01 3.04 40.58 4.85
5000 6600 3.345808 CCCGTGTCACGTTGGCTG 61.346 66.667 23.01 7.29 40.58 4.85
5004 6604 3.698463 GACGCCCGTGTCACGTTG 61.698 66.667 23.01 14.83 40.58 4.10
5005 6605 3.836176 GAGACGCCCGTGTCACGTT 62.836 63.158 23.01 5.28 40.58 3.99
5006 6606 4.338539 GAGACGCCCGTGTCACGT 62.339 66.667 23.01 5.25 40.58 4.49
5007 6607 1.989966 ATAGAGACGCCCGTGTCACG 61.990 60.000 18.54 18.54 40.36 4.35
5008 6608 0.525668 CATAGAGACGCCCGTGTCAC 60.526 60.000 18.15 6.89 40.36 3.67
5009 6609 1.663379 CCATAGAGACGCCCGTGTCA 61.663 60.000 18.15 6.64 40.36 3.58
5010 6610 1.065928 CCATAGAGACGCCCGTGTC 59.934 63.158 9.60 9.60 38.50 3.67
5011 6611 3.207354 CCATAGAGACGCCCGTGT 58.793 61.111 0.00 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.