Multiple sequence alignment - TraesCS3D01G049600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G049600 chr3D 100.000 4621 0 0 1 4621 19011566 19016186 0.000000e+00 8534.0
1 TraesCS3D01G049600 chr3D 85.758 1636 190 22 2181 3789 18908293 18909912 0.000000e+00 1690.0
2 TraesCS3D01G049600 chr3D 85.427 1640 197 23 2181 3793 18800925 18802549 0.000000e+00 1666.0
3 TraesCS3D01G049600 chr3A 93.418 4649 236 34 1 4621 26486940 26491546 0.000000e+00 6826.0
4 TraesCS3D01G049600 chr3A 84.984 1605 192 30 2181 3753 26205232 26206819 0.000000e+00 1583.0
5 TraesCS3D01G049600 chr3A 84.511 1543 205 24 2276 3793 26232835 26234368 0.000000e+00 1495.0
6 TraesCS3D01G049600 chr3B 85.835 2358 232 55 166 2500 30583971 30586249 0.000000e+00 2410.0
7 TraesCS3D01G049600 chr3B 91.699 1530 110 9 2531 4056 30255271 30256787 0.000000e+00 2106.0
8 TraesCS3D01G049600 chr3B 91.634 1530 111 9 2531 4056 29864313 29865829 0.000000e+00 2100.0
9 TraesCS3D01G049600 chr3B 90.969 1528 100 16 2531 4054 30586248 30587741 0.000000e+00 2023.0
10 TraesCS3D01G049600 chr3B 88.973 1324 119 17 1187 2500 29863008 29864314 0.000000e+00 1611.0
11 TraesCS3D01G049600 chr3B 88.973 1324 119 19 1187 2500 30253966 30255272 0.000000e+00 1611.0
12 TraesCS3D01G049600 chr3B 86.982 1375 160 14 2429 3793 29853844 29855209 0.000000e+00 1530.0
13 TraesCS3D01G049600 chr3B 91.062 593 42 7 163 749 29861646 29862233 0.000000e+00 791.0
14 TraesCS3D01G049600 chr3B 90.572 594 44 7 163 749 30252603 30253191 0.000000e+00 776.0
15 TraesCS3D01G049600 chr3B 90.215 419 35 5 782 1195 29862226 29862643 4.070000e-150 542.0
16 TraesCS3D01G049600 chr3B 89.737 419 36 5 782 1195 30253184 30253600 3.170000e-146 529.0
17 TraesCS3D01G049600 chr3B 90.909 187 9 1 1 179 29861444 29861630 1.280000e-60 244.0
18 TraesCS3D01G049600 chr3B 90.909 187 9 1 1 179 30252401 30252587 1.280000e-60 244.0
19 TraesCS3D01G049600 chr3B 87.778 90 10 1 2184 2272 29526681 29526592 2.270000e-18 104.0
20 TraesCS3D01G049600 chr3B 87.234 94 8 4 80 169 30583837 30583930 2.270000e-18 104.0
21 TraesCS3D01G049600 chr3B 85.556 90 9 3 2184 2272 29563893 29563807 1.770000e-14 91.6
22 TraesCS3D01G049600 chr7B 86.554 1361 163 14 2438 3787 64321505 64322856 0.000000e+00 1482.0
23 TraesCS3D01G049600 chr7B 89.247 93 9 1 2181 2272 64321404 64321496 1.050000e-21 115.0
24 TraesCS3D01G049600 chrUn 93.416 243 16 0 953 1195 478448441 478448199 1.220000e-95 361.0
25 TraesCS3D01G049600 chr7D 88.172 93 10 1 2181 2272 105685678 105685770 4.890000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G049600 chr3D 19011566 19016186 4620 False 8534.000000 8534 100.000000 1 4621 1 chr3D.!!$F3 4620
1 TraesCS3D01G049600 chr3D 18908293 18909912 1619 False 1690.000000 1690 85.758000 2181 3789 1 chr3D.!!$F2 1608
2 TraesCS3D01G049600 chr3D 18800925 18802549 1624 False 1666.000000 1666 85.427000 2181 3793 1 chr3D.!!$F1 1612
3 TraesCS3D01G049600 chr3A 26486940 26491546 4606 False 6826.000000 6826 93.418000 1 4621 1 chr3A.!!$F3 4620
4 TraesCS3D01G049600 chr3A 26205232 26206819 1587 False 1583.000000 1583 84.984000 2181 3753 1 chr3A.!!$F1 1572
5 TraesCS3D01G049600 chr3A 26232835 26234368 1533 False 1495.000000 1495 84.511000 2276 3793 1 chr3A.!!$F2 1517
6 TraesCS3D01G049600 chr3B 29853844 29855209 1365 False 1530.000000 1530 86.982000 2429 3793 1 chr3B.!!$F1 1364
7 TraesCS3D01G049600 chr3B 30583837 30587741 3904 False 1512.333333 2410 88.012667 80 4054 3 chr3B.!!$F4 3974
8 TraesCS3D01G049600 chr3B 29861444 29865829 4385 False 1057.600000 2100 90.558600 1 4056 5 chr3B.!!$F2 4055
9 TraesCS3D01G049600 chr3B 30252401 30256787 4386 False 1053.200000 2106 90.378000 1 4056 5 chr3B.!!$F3 4055
10 TraesCS3D01G049600 chr7B 64321404 64322856 1452 False 798.500000 1482 87.900500 2181 3787 2 chr7B.!!$F1 1606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
971 1105 0.104304 CCATCCTCCCCGTTTACGAG 59.896 60.000 3.46 0.0 43.02 4.18 F
1621 2129 0.104304 CGGGTTCGTCCTAGATTGGG 59.896 60.000 0.00 0.0 36.25 4.12 F
1628 2136 0.464554 GTCCTAGATTGGGCAGGCAC 60.465 60.000 0.00 0.0 0.00 5.01 F
1629 2137 1.152881 CCTAGATTGGGCAGGCACC 60.153 63.158 0.00 0.0 0.00 5.01 F
1630 2138 1.524621 CTAGATTGGGCAGGCACCG 60.525 63.158 0.00 0.0 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2754 3302 0.401356 TCTCCCAGCTGATTGTTGCA 59.599 50.000 17.39 0.0 0.00 4.08 R
2768 3316 1.633945 ACACCATAACCACCTTCTCCC 59.366 52.381 0.00 0.0 0.00 4.30 R
2845 3393 1.669795 CGTCCCCATTTTCTTTGCAGC 60.670 52.381 0.00 0.0 0.00 5.25 R
3473 4021 4.495844 CCGATTAAGGTCATCTTTTTCGCC 60.496 45.833 0.00 0.0 37.34 5.54 R
3673 4228 2.165319 AGCGTGTAGGTCAAGTTTCC 57.835 50.000 0.00 0.0 0.00 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 134 3.307691 CCACACATATGACACCACTCCTT 60.308 47.826 10.38 0.00 0.00 3.36
206 280 9.239551 GTCCACCATATAAAGAAACTTTTAGGT 57.760 33.333 2.17 3.82 0.00 3.08
216 290 6.701432 AGAAACTTTTAGGTATTGTCGACG 57.299 37.500 11.62 0.00 0.00 5.12
282 362 8.868522 ACTTCCAATTTGAATTCTGAGATGTA 57.131 30.769 7.05 0.00 0.00 2.29
310 390 6.480763 TCATGTAAAATGTGGTATCACCTGT 58.519 36.000 3.07 0.00 42.98 4.00
375 456 2.916640 CTCATGGCCTCTTTCCTTCTC 58.083 52.381 3.32 0.00 0.00 2.87
377 458 1.563410 CATGGCCTCTTTCCTTCTCCT 59.437 52.381 3.32 0.00 0.00 3.69
392 473 0.187361 CTCCTTCCCAACCCACCAAA 59.813 55.000 0.00 0.00 0.00 3.28
395 476 0.466555 CTTCCCAACCCACCAAACGA 60.467 55.000 0.00 0.00 0.00 3.85
419 501 2.029728 GTCGATTGCCTCTCAATTCACG 59.970 50.000 0.00 0.00 44.95 4.35
422 504 3.804325 CGATTGCCTCTCAATTCACGTAT 59.196 43.478 0.00 0.00 44.95 3.06
489 571 2.016905 AGGCGCATCTAATAGACCCT 57.983 50.000 10.83 0.00 0.00 4.34
491 573 3.093057 AGGCGCATCTAATAGACCCTAG 58.907 50.000 10.83 0.00 0.00 3.02
557 639 1.964223 AGTGAGTAGTGACAGTGTGGG 59.036 52.381 0.00 0.00 0.00 4.61
582 664 3.118445 TCATAACGAACCATGCATCCAGA 60.118 43.478 0.00 0.00 0.00 3.86
599 681 5.955961 TCCAGAACAATGTCCAGATCATA 57.044 39.130 0.00 0.00 0.00 2.15
642 726 7.173390 ACTTCTCCTTGCTCTAAACATAACAAC 59.827 37.037 0.00 0.00 0.00 3.32
755 883 1.065109 GGTTTGTTGCCGCGTCTTT 59.935 52.632 4.92 0.00 0.00 2.52
777 905 1.069596 GGACAACGTTGTACCCGGT 59.930 57.895 32.39 9.55 42.43 5.28
787 915 0.535553 TGTACCCGGTTTCTGTTGCC 60.536 55.000 0.00 0.00 0.00 4.52
794 922 1.835121 GGTTTCTGTTGCCGTTTCAC 58.165 50.000 0.00 0.00 0.00 3.18
798 926 0.653636 TCTGTTGCCGTTTCACGTTC 59.346 50.000 0.00 0.00 40.58 3.95
816 944 4.455190 ACGTTCACTCTCTCTAGTTGGTAC 59.545 45.833 0.00 0.00 0.00 3.34
822 950 4.701171 ACTCTCTCTAGTTGGTACGGAAAG 59.299 45.833 0.00 0.00 0.00 2.62
828 957 3.703286 AGTTGGTACGGAAAGCAAAAC 57.297 42.857 1.65 0.00 38.48 2.43
837 967 1.792367 GGAAAGCAAAACGCATTGACC 59.208 47.619 5.07 0.00 46.13 4.02
843 973 2.250188 CAAAACGCATTGACCGAATCC 58.750 47.619 0.00 0.00 31.84 3.01
844 974 0.446222 AAACGCATTGACCGAATCCG 59.554 50.000 0.00 0.00 0.00 4.18
871 1001 0.251916 CGTTGCCTAATCCCCACAGA 59.748 55.000 0.00 0.00 0.00 3.41
950 1084 2.031333 CCTTCACTCACTTGAGCTTTGC 60.031 50.000 6.14 0.00 45.79 3.68
961 1095 3.521796 GCTTTGCGCCATCCTCCC 61.522 66.667 4.18 0.00 0.00 4.30
971 1105 0.104304 CCATCCTCCCCGTTTACGAG 59.896 60.000 3.46 0.00 43.02 4.18
983 1117 3.242804 CCGTTTACGAGATCTGTCTCCTC 60.243 52.174 0.00 0.00 46.67 3.71
1022 1156 0.975556 TATCCAACCTCGCTGCTCCA 60.976 55.000 0.00 0.00 0.00 3.86
1030 1164 0.108472 CTCGCTGCTCCACATCTTGA 60.108 55.000 0.00 0.00 0.00 3.02
1032 1166 1.065926 TCGCTGCTCCACATCTTGATT 60.066 47.619 0.00 0.00 0.00 2.57
1388 1896 1.605058 GCCCTGTGCTTCCTCTACGA 61.605 60.000 0.00 0.00 36.87 3.43
1408 1916 4.681978 GCAACGGGACAGAGCCGT 62.682 66.667 0.00 0.00 42.08 5.68
1531 2039 0.442310 CACCGGAAACTGCATGTACG 59.558 55.000 9.46 0.00 0.00 3.67
1560 2068 2.268920 GTGCTTGGATCGGAGGCA 59.731 61.111 0.00 0.00 0.00 4.75
1614 2122 0.609957 TGAAGAGCGGGTTCGTCCTA 60.610 55.000 0.00 0.00 38.89 2.94
1621 2129 0.104304 CGGGTTCGTCCTAGATTGGG 59.896 60.000 0.00 0.00 36.25 4.12
1628 2136 0.464554 GTCCTAGATTGGGCAGGCAC 60.465 60.000 0.00 0.00 0.00 5.01
1629 2137 1.152881 CCTAGATTGGGCAGGCACC 60.153 63.158 0.00 0.00 0.00 5.01
1630 2138 1.524621 CTAGATTGGGCAGGCACCG 60.525 63.158 0.00 0.00 0.00 4.94
1631 2139 2.947938 CTAGATTGGGCAGGCACCGG 62.948 65.000 0.00 0.00 0.00 5.28
2017 2529 2.888414 ACACCAAAAGAATGGGTAACGG 59.112 45.455 0.00 0.00 45.18 4.44
2073 2585 6.380095 TCGTAAAATGCCACTACAAAAAGT 57.620 33.333 0.00 0.00 0.00 2.66
2768 3316 3.909776 TCTTCTTGCAACAATCAGCTG 57.090 42.857 7.63 7.63 0.00 4.24
2845 3393 4.389687 GGTTGCTGTAAAATTCTTGCATGG 59.610 41.667 0.00 0.00 0.00 3.66
3302 3850 2.224450 CGGGGTGGTTTCAACTAAGTCT 60.224 50.000 0.00 0.00 0.00 3.24
3473 4021 4.002982 TCACGACTGGAATTGAGGAAATG 58.997 43.478 0.00 0.00 0.00 2.32
3755 4310 3.470645 AGAAAGTGCAAGTTCTACCGT 57.529 42.857 10.63 0.00 32.29 4.83
3850 4405 7.023171 AGTTCTACTGGATACGAGGAGATAT 57.977 40.000 0.00 0.00 35.50 1.63
3852 4407 6.375830 TCTACTGGATACGAGGAGATATGT 57.624 41.667 0.00 0.00 42.51 2.29
3906 4462 4.345854 ACTAGAAATCCACCTCGTCTCTT 58.654 43.478 0.00 0.00 0.00 2.85
4057 4617 1.944676 GATACTCCGCGAAGTGCCG 60.945 63.158 8.79 0.00 42.08 5.69
4421 4981 2.900716 TCGATGAGTGTTGTGTTCCA 57.099 45.000 0.00 0.00 0.00 3.53
4475 5035 6.431234 GCCTTTCAAGACTAGAAATTTCCTCA 59.569 38.462 14.61 0.00 34.75 3.86
4482 5042 9.237846 CAAGACTAGAAATTTCCTCAAAAACAC 57.762 33.333 14.61 0.00 0.00 3.32
4543 5103 4.832248 TGTCAGAATCCAGACGCTTAAAT 58.168 39.130 0.00 0.00 37.58 1.40
4548 5108 7.011482 GTCAGAATCCAGACGCTTAAATTGTAT 59.989 37.037 0.00 0.00 0.00 2.29
4558 5118 9.341899 AGACGCTTAAATTGTATCAATTTGAAC 57.658 29.630 22.47 13.32 32.64 3.18
4575 5135 7.703621 CAATTTGAACATTGTGAGGATACATCC 59.296 37.037 0.00 0.00 37.04 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.101082 TGTTGGTTGTGCAGTACGTCTA 59.899 45.455 0.00 0.00 0.00 2.59
150 179 9.645059 CTGACACCATATCTTACGAATATTCAT 57.355 33.333 15.57 2.51 0.00 2.57
160 189 6.092259 GTGGACAAACTGACACCATATCTTAC 59.908 42.308 0.00 0.00 33.19 2.34
206 280 4.487019 TGTTCATAAGTGCGTCGACAATA 58.513 39.130 17.16 0.00 0.00 1.90
216 290 8.970691 AAATAATTGTGACTGTTCATAAGTGC 57.029 30.769 0.00 0.00 36.41 4.40
282 362 9.866655 AGGTGATACCACATTTTACATGATATT 57.133 29.630 0.00 0.00 44.93 1.28
310 390 0.179012 ATCATGCATGACGGATGGCA 60.179 50.000 30.92 6.46 43.33 4.92
334 414 4.819761 GAGCATGAGCACGGCCGA 62.820 66.667 35.90 9.64 45.49 5.54
375 456 1.460273 CGTTTGGTGGGTTGGGAAGG 61.460 60.000 0.00 0.00 0.00 3.46
377 458 0.033405 TTCGTTTGGTGGGTTGGGAA 60.033 50.000 0.00 0.00 0.00 3.97
392 473 0.456312 GAGAGGCAATCGACGTTCGT 60.456 55.000 0.00 0.00 41.35 3.85
395 476 2.386661 ATTGAGAGGCAATCGACGTT 57.613 45.000 0.00 0.00 43.64 3.99
448 530 5.453198 CCTTAGGTTTTCAACTGGCAATGTT 60.453 40.000 0.00 0.00 0.00 2.71
471 553 3.090037 TCTAGGGTCTATTAGATGCGCC 58.910 50.000 4.18 0.00 0.00 6.53
489 571 3.515502 AGTAGTGGAGCATTGCTTGTCTA 59.484 43.478 13.35 11.88 39.88 2.59
491 573 2.704572 AGTAGTGGAGCATTGCTTGTC 58.295 47.619 13.35 6.63 39.88 3.18
557 639 4.275689 TGGATGCATGGTTCGTTATGAATC 59.724 41.667 2.46 0.00 38.22 2.52
582 664 4.508551 TGCCTATGATCTGGACATTGTT 57.491 40.909 0.00 0.00 0.00 2.83
599 681 4.642429 AGAAGTTGTCGTAAAAGATGCCT 58.358 39.130 0.00 0.00 0.00 4.75
658 743 6.337356 CACGGGTTTATGGCAAAGATATTTT 58.663 36.000 0.00 0.00 0.00 1.82
665 750 1.540267 TCCACGGGTTTATGGCAAAG 58.460 50.000 0.00 0.00 35.81 2.77
677 762 1.178534 AGTTGGCAATGTTCCACGGG 61.179 55.000 1.92 0.00 32.45 5.28
714 799 1.314730 GGTGGTTTGTCAACGTCCAT 58.685 50.000 0.00 0.00 33.13 3.41
755 883 0.533308 GGGTACAACGTTGTCCAGCA 60.533 55.000 35.40 16.66 42.35 4.41
794 922 4.435784 CGTACCAACTAGAGAGAGTGAACG 60.436 50.000 0.00 0.00 0.00 3.95
798 926 3.607741 TCCGTACCAACTAGAGAGAGTG 58.392 50.000 0.00 0.00 0.00 3.51
816 944 1.451651 GTCAATGCGTTTTGCTTTCCG 59.548 47.619 0.00 0.00 46.63 4.30
822 950 1.648681 GATTCGGTCAATGCGTTTTGC 59.351 47.619 0.00 0.00 46.70 3.68
837 967 1.461888 GCAACGACTTTGACGGATTCG 60.462 52.381 0.00 0.00 37.39 3.34
844 974 2.418976 GGGATTAGGCAACGACTTTGAC 59.581 50.000 0.00 0.00 44.76 3.18
878 1008 0.808453 GCGGTGTTAGCCTGCGATTA 60.808 55.000 0.00 0.00 0.00 1.75
950 1084 1.523032 GTAAACGGGGAGGATGGCG 60.523 63.158 0.00 0.00 0.00 5.69
983 1117 5.048921 GGATACATGCCAACAATCTGATCTG 60.049 44.000 0.00 0.00 0.00 2.90
1022 1156 3.679389 AGGAACAGCGAAATCAAGATGT 58.321 40.909 0.00 0.00 38.76 3.06
1030 1164 3.197766 TGATGGAGTAGGAACAGCGAAAT 59.802 43.478 0.00 0.00 0.00 2.17
1032 1166 2.176045 TGATGGAGTAGGAACAGCGAA 58.824 47.619 0.00 0.00 0.00 4.70
1127 1261 0.105039 GGAATTCGACGGATGGCTCT 59.895 55.000 0.00 0.00 0.00 4.09
1132 1266 1.858091 CAGGAGGAATTCGACGGATG 58.142 55.000 0.00 0.00 0.00 3.51
1195 1329 2.361737 GCCCCTCAAGGAAGCCAC 60.362 66.667 0.00 0.00 38.24 5.01
1388 1896 2.031163 GCTCTGTCCCGTTGCAGT 59.969 61.111 0.00 0.00 34.57 4.40
1408 1916 2.125713 CACATAGTCGCGCCCACA 60.126 61.111 0.00 0.00 0.00 4.17
1450 1958 1.622607 TACACGGAGATGGGCCAAGG 61.623 60.000 11.89 0.18 0.00 3.61
1560 2068 2.107141 GCCGCCGTCAAGATAGCT 59.893 61.111 0.00 0.00 0.00 3.32
1614 2122 4.431131 CCGGTGCCTGCCCAATCT 62.431 66.667 0.00 0.00 0.00 2.40
1631 2139 4.400961 AAGAGCAGTCCCCAGCGC 62.401 66.667 0.00 0.00 35.48 5.92
1850 2362 3.268023 GTGAGGGCACTGCTAGTTTAT 57.732 47.619 0.00 0.00 41.84 1.40
1989 2501 4.340950 ACCCATTCTTTTGGTGTACACAAG 59.659 41.667 26.51 20.21 38.05 3.16
1990 2502 4.282496 ACCCATTCTTTTGGTGTACACAA 58.718 39.130 26.51 14.21 34.77 3.33
1992 2504 5.561339 CGTTACCCATTCTTTTGGTGTACAC 60.561 44.000 18.01 18.01 34.77 2.90
1993 2505 4.515944 CGTTACCCATTCTTTTGGTGTACA 59.484 41.667 0.00 0.00 34.77 2.90
1994 2506 4.083164 CCGTTACCCATTCTTTTGGTGTAC 60.083 45.833 0.00 0.00 34.77 2.90
2025 2537 2.225467 GAAGAGTTGGCAAGCAGAGTT 58.775 47.619 0.00 0.00 0.00 3.01
2754 3302 0.401356 TCTCCCAGCTGATTGTTGCA 59.599 50.000 17.39 0.00 0.00 4.08
2768 3316 1.633945 ACACCATAACCACCTTCTCCC 59.366 52.381 0.00 0.00 0.00 4.30
2845 3393 1.669795 CGTCCCCATTTTCTTTGCAGC 60.670 52.381 0.00 0.00 0.00 5.25
3302 3850 8.385491 AGCATCATCCCATAACTATAAACATCA 58.615 33.333 0.00 0.00 0.00 3.07
3473 4021 4.495844 CCGATTAAGGTCATCTTTTTCGCC 60.496 45.833 0.00 0.00 37.34 5.54
3673 4228 2.165319 AGCGTGTAGGTCAAGTTTCC 57.835 50.000 0.00 0.00 0.00 3.13
3674 4229 4.748600 AGTTAAGCGTGTAGGTCAAGTTTC 59.251 41.667 0.00 0.00 32.54 2.78
3675 4230 4.700700 AGTTAAGCGTGTAGGTCAAGTTT 58.299 39.130 0.00 0.00 34.25 2.66
3832 4387 6.098409 ACAAAACATATCTCCTCGTATCCAGT 59.902 38.462 0.00 0.00 0.00 4.00
3850 4405 9.658799 TTGTAGGATTTTTCAATTCACAAAACA 57.341 25.926 0.00 0.00 0.00 2.83
3852 4407 8.825745 GCTTGTAGGATTTTTCAATTCACAAAA 58.174 29.630 0.00 0.00 0.00 2.44
4057 4617 1.476488 ACAATTACAAGCCATTCCCGC 59.524 47.619 0.00 0.00 0.00 6.13
4059 4619 5.146010 TGAAACAATTACAAGCCATTCCC 57.854 39.130 0.00 0.00 0.00 3.97
4212 4772 7.730364 GGAACCACCTTAATATGTATCACAG 57.270 40.000 0.00 0.00 35.41 3.66
4290 4850 5.982890 AAATTGTTGATCCCAGTTACCTG 57.017 39.130 0.00 0.00 38.50 4.00
4434 4994 0.040204 AGGCCTTTGAAGACCCCATG 59.960 55.000 0.00 0.00 0.00 3.66
4455 5015 9.184523 TGTTTTTGAGGAAATTTCTAGTCTTGA 57.815 29.630 17.42 0.00 0.00 3.02
4487 5047 6.088824 CCGTAGTTAGACTGTAAATCGTGTT 58.911 40.000 0.00 0.00 0.00 3.32
4500 5060 5.181009 ACATTTTAAGCCCCGTAGTTAGAC 58.819 41.667 0.00 0.00 0.00 2.59
4543 5103 8.175925 TCCTCACAATGTTCAAATTGATACAA 57.824 30.769 12.40 0.00 39.46 2.41
4548 5108 7.757941 TGTATCCTCACAATGTTCAAATTGA 57.242 32.000 4.04 0.00 39.46 2.57
4558 5118 8.413309 AATTATTGGGATGTATCCTCACAATG 57.587 34.615 17.12 0.00 46.35 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.