Multiple sequence alignment - TraesCS3D01G047400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G047400 chr3D 100.000 3704 0 0 1 3704 17659732 17663435 0.000000e+00 6841
1 TraesCS3D01G047400 chr3D 86.090 2128 281 15 596 2718 608155479 608157596 0.000000e+00 2276
2 TraesCS3D01G047400 chr6D 97.588 3110 71 3 596 3704 16784160 16781054 0.000000e+00 5325
3 TraesCS3D01G047400 chr6D 96.818 3111 97 2 595 3704 447453222 447450113 0.000000e+00 5195
4 TraesCS3D01G047400 chr2D 97.233 2602 70 1 587 3188 35006454 35009053 0.000000e+00 4405
5 TraesCS3D01G047400 chr2D 92.346 2992 222 5 596 3586 635880618 635877633 0.000000e+00 4250
6 TraesCS3D01G047400 chr2D 97.885 520 10 1 3185 3704 35017812 35018330 0.000000e+00 898
7 TraesCS3D01G047400 chr4D 95.707 1840 77 2 596 2434 405037575 405039413 0.000000e+00 2959
8 TraesCS3D01G047400 chr4D 97.257 1276 35 0 2429 3704 405048163 405049438 0.000000e+00 2163
9 TraesCS3D01G047400 chr3A 83.552 3131 478 32 592 3704 667503930 667500819 0.000000e+00 2894
10 TraesCS3D01G047400 chr3A 83.513 558 46 21 2 554 19284751 19284235 2.590000e-131 479
11 TraesCS3D01G047400 chr5B 81.650 3079 542 21 633 3699 518963262 518966329 0.000000e+00 2534
12 TraesCS3D01G047400 chr2A 84.152 2587 370 33 596 3162 238527195 238524629 0.000000e+00 2470
13 TraesCS3D01G047400 chr3B 89.758 1650 165 4 2051 3699 4607255 4605609 0.000000e+00 2108
14 TraesCS3D01G047400 chr1A 92.548 1154 76 5 2551 3704 113488734 113487591 0.000000e+00 1646
15 TraesCS3D01G047400 chrUn 84.910 444 42 13 2 440 282461505 282461928 3.420000e-115 425
16 TraesCS3D01G047400 chrUn 84.910 444 42 13 2 440 337592506 337592929 3.420000e-115 425


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G047400 chr3D 17659732 17663435 3703 False 6841 6841 100.000 1 3704 1 chr3D.!!$F1 3703
1 TraesCS3D01G047400 chr3D 608155479 608157596 2117 False 2276 2276 86.090 596 2718 1 chr3D.!!$F2 2122
2 TraesCS3D01G047400 chr6D 16781054 16784160 3106 True 5325 5325 97.588 596 3704 1 chr6D.!!$R1 3108
3 TraesCS3D01G047400 chr6D 447450113 447453222 3109 True 5195 5195 96.818 595 3704 1 chr6D.!!$R2 3109
4 TraesCS3D01G047400 chr2D 35006454 35009053 2599 False 4405 4405 97.233 587 3188 1 chr2D.!!$F1 2601
5 TraesCS3D01G047400 chr2D 635877633 635880618 2985 True 4250 4250 92.346 596 3586 1 chr2D.!!$R1 2990
6 TraesCS3D01G047400 chr2D 35017812 35018330 518 False 898 898 97.885 3185 3704 1 chr2D.!!$F2 519
7 TraesCS3D01G047400 chr4D 405037575 405039413 1838 False 2959 2959 95.707 596 2434 1 chr4D.!!$F1 1838
8 TraesCS3D01G047400 chr4D 405048163 405049438 1275 False 2163 2163 97.257 2429 3704 1 chr4D.!!$F2 1275
9 TraesCS3D01G047400 chr3A 667500819 667503930 3111 True 2894 2894 83.552 592 3704 1 chr3A.!!$R2 3112
10 TraesCS3D01G047400 chr3A 19284235 19284751 516 True 479 479 83.513 2 554 1 chr3A.!!$R1 552
11 TraesCS3D01G047400 chr5B 518963262 518966329 3067 False 2534 2534 81.650 633 3699 1 chr5B.!!$F1 3066
12 TraesCS3D01G047400 chr2A 238524629 238527195 2566 True 2470 2470 84.152 596 3162 1 chr2A.!!$R1 2566
13 TraesCS3D01G047400 chr3B 4605609 4607255 1646 True 2108 2108 89.758 2051 3699 1 chr3B.!!$R1 1648
14 TraesCS3D01G047400 chr1A 113487591 113488734 1143 True 1646 1646 92.548 2551 3704 1 chr1A.!!$R1 1153

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
234 239 0.031857 TGCCAATTTTCACCGTGCTG 59.968 50.000 0.00 0.0 0.00 4.41 F
465 470 0.034767 TGCATGCAGGAAGGAGGAAG 60.035 55.000 18.46 0.0 0.00 3.46 F
549 554 0.250252 TCCAGCAAATCACGCACTGA 60.250 50.000 0.00 0.0 0.00 3.41 F
590 595 0.252742 AGACTTACCTGGAGGGGGTG 60.253 60.000 0.00 0.0 40.27 4.61 F
607 612 1.135257 GGTGGATCTGTCACGACTGAG 60.135 57.143 11.64 0.0 41.45 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1558 1573 0.034337 GTGGCTACACGAACCCAGAA 59.966 55.000 0.00 0.00 37.94 3.02 R
2119 2407 0.179134 CGATCTTCGCCTCGTCCTTT 60.179 55.000 0.00 0.00 31.14 3.11 R
2426 2714 0.823356 GAAGCTGTGGGAACTGCCAA 60.823 55.000 4.39 0.00 38.95 4.52 R
2629 2917 1.076485 GCCAGTCCATTCCCAGCAT 60.076 57.895 0.00 0.00 0.00 3.79 R
2909 3200 1.973812 GGCAACTCTGTTGGCTCCC 60.974 63.158 23.48 8.75 41.17 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 43 1.299541 CGCCCATCGCTTGATTTAGT 58.700 50.000 0.00 0.00 34.21 2.24
39 44 1.003545 CGCCCATCGCTTGATTTAGTG 60.004 52.381 0.00 0.00 34.21 2.74
40 45 1.334869 GCCCATCGCTTGATTTAGTGG 59.665 52.381 0.00 0.00 0.00 4.00
41 46 1.334869 CCCATCGCTTGATTTAGTGGC 59.665 52.381 0.00 0.00 0.00 5.01
42 47 2.016318 CCATCGCTTGATTTAGTGGCA 58.984 47.619 0.00 0.00 0.00 4.92
43 48 2.620115 CCATCGCTTGATTTAGTGGCAT 59.380 45.455 0.00 0.00 0.00 4.40
44 49 3.067180 CCATCGCTTGATTTAGTGGCATT 59.933 43.478 0.00 0.00 0.00 3.56
45 50 4.440525 CCATCGCTTGATTTAGTGGCATTT 60.441 41.667 0.00 0.00 0.00 2.32
46 51 4.782019 TCGCTTGATTTAGTGGCATTTT 57.218 36.364 0.00 0.00 0.00 1.82
47 52 4.484236 TCGCTTGATTTAGTGGCATTTTG 58.516 39.130 0.00 0.00 0.00 2.44
48 53 4.217334 TCGCTTGATTTAGTGGCATTTTGA 59.783 37.500 0.00 0.00 0.00 2.69
49 54 4.324402 CGCTTGATTTAGTGGCATTTTGAC 59.676 41.667 0.00 0.00 0.00 3.18
50 55 4.324402 GCTTGATTTAGTGGCATTTTGACG 59.676 41.667 0.00 0.00 0.00 4.35
51 56 3.832276 TGATTTAGTGGCATTTTGACGC 58.168 40.909 0.00 0.00 35.76 5.19
53 58 4.022416 TGATTTAGTGGCATTTTGACGCTT 60.022 37.500 1.17 0.00 45.44 4.68
54 59 4.314740 TTTAGTGGCATTTTGACGCTTT 57.685 36.364 1.17 0.00 45.44 3.51
55 60 5.440234 TTTAGTGGCATTTTGACGCTTTA 57.560 34.783 1.17 0.00 45.44 1.85
56 61 3.559238 AGTGGCATTTTGACGCTTTAG 57.441 42.857 0.00 0.00 45.44 1.85
57 62 2.228822 AGTGGCATTTTGACGCTTTAGG 59.771 45.455 0.00 0.00 45.44 2.69
58 63 1.067915 TGGCATTTTGACGCTTTAGGC 60.068 47.619 0.00 0.00 37.64 3.93
70 75 2.973945 GCTTTAGGCGTGATATAGGGG 58.026 52.381 0.00 0.00 0.00 4.79
71 76 2.565834 GCTTTAGGCGTGATATAGGGGA 59.434 50.000 0.00 0.00 0.00 4.81
72 77 3.007614 GCTTTAGGCGTGATATAGGGGAA 59.992 47.826 0.00 0.00 0.00 3.97
73 78 4.822026 CTTTAGGCGTGATATAGGGGAAG 58.178 47.826 0.00 0.00 0.00 3.46
74 79 2.400467 AGGCGTGATATAGGGGAAGT 57.600 50.000 0.00 0.00 0.00 3.01
75 80 2.249139 AGGCGTGATATAGGGGAAGTC 58.751 52.381 0.00 0.00 0.00 3.01
76 81 1.275573 GGCGTGATATAGGGGAAGTCC 59.724 57.143 0.00 0.00 0.00 3.85
94 99 4.077184 CGGCGGCTCCACCACTAA 62.077 66.667 7.61 0.00 39.03 2.24
95 100 2.436115 GGCGGCTCCACCACTAAC 60.436 66.667 0.00 0.00 39.03 2.34
96 101 2.813908 GCGGCTCCACCACTAACG 60.814 66.667 0.00 0.00 39.03 3.18
97 102 2.967397 CGGCTCCACCACTAACGA 59.033 61.111 0.00 0.00 39.03 3.85
98 103 1.445582 CGGCTCCACCACTAACGAC 60.446 63.158 0.00 0.00 39.03 4.34
99 104 1.445582 GGCTCCACCACTAACGACG 60.446 63.158 0.00 0.00 38.86 5.12
100 105 1.582968 GCTCCACCACTAACGACGA 59.417 57.895 0.00 0.00 0.00 4.20
101 106 0.731855 GCTCCACCACTAACGACGAC 60.732 60.000 0.00 0.00 0.00 4.34
102 107 0.109412 CTCCACCACTAACGACGACC 60.109 60.000 0.00 0.00 0.00 4.79
103 108 0.538057 TCCACCACTAACGACGACCT 60.538 55.000 0.00 0.00 0.00 3.85
104 109 1.167851 CCACCACTAACGACGACCTA 58.832 55.000 0.00 0.00 0.00 3.08
105 110 1.541147 CCACCACTAACGACGACCTAA 59.459 52.381 0.00 0.00 0.00 2.69
106 111 2.030007 CCACCACTAACGACGACCTAAA 60.030 50.000 0.00 0.00 0.00 1.85
107 112 3.552684 CCACCACTAACGACGACCTAAAA 60.553 47.826 0.00 0.00 0.00 1.52
108 113 3.426525 CACCACTAACGACGACCTAAAAC 59.573 47.826 0.00 0.00 0.00 2.43
109 114 3.068024 ACCACTAACGACGACCTAAAACA 59.932 43.478 0.00 0.00 0.00 2.83
110 115 4.240096 CCACTAACGACGACCTAAAACAT 58.760 43.478 0.00 0.00 0.00 2.71
111 116 4.687483 CCACTAACGACGACCTAAAACATT 59.313 41.667 0.00 0.00 0.00 2.71
112 117 5.389098 CCACTAACGACGACCTAAAACATTG 60.389 44.000 0.00 0.00 0.00 2.82
113 118 5.176223 CACTAACGACGACCTAAAACATTGT 59.824 40.000 0.00 0.00 0.00 2.71
114 119 4.720530 AACGACGACCTAAAACATTGTC 57.279 40.909 0.00 0.00 0.00 3.18
115 120 3.719924 ACGACGACCTAAAACATTGTCA 58.280 40.909 0.00 0.00 0.00 3.58
116 121 4.312443 ACGACGACCTAAAACATTGTCAT 58.688 39.130 0.00 0.00 0.00 3.06
117 122 4.753107 ACGACGACCTAAAACATTGTCATT 59.247 37.500 0.00 0.00 0.00 2.57
118 123 5.079406 CGACGACCTAAAACATTGTCATTG 58.921 41.667 0.00 0.00 0.00 2.82
119 124 5.333798 CGACGACCTAAAACATTGTCATTGT 60.334 40.000 0.00 0.00 0.00 2.71
120 125 5.757886 ACGACCTAAAACATTGTCATTGTG 58.242 37.500 1.25 0.00 0.00 3.33
121 126 5.298276 ACGACCTAAAACATTGTCATTGTGT 59.702 36.000 1.25 0.00 0.00 3.72
122 127 5.851177 CGACCTAAAACATTGTCATTGTGTC 59.149 40.000 1.25 3.94 0.00 3.67
123 128 6.512578 CGACCTAAAACATTGTCATTGTGTCA 60.513 38.462 1.25 0.00 0.00 3.58
124 129 7.106439 ACCTAAAACATTGTCATTGTGTCAA 57.894 32.000 1.25 0.00 30.75 3.18
125 130 7.551585 ACCTAAAACATTGTCATTGTGTCAAA 58.448 30.769 1.25 0.00 30.07 2.69
126 131 8.037758 ACCTAAAACATTGTCATTGTGTCAAAA 58.962 29.630 1.25 0.00 30.07 2.44
127 132 8.877779 CCTAAAACATTGTCATTGTGTCAAAAA 58.122 29.630 1.25 0.00 30.07 1.94
171 176 2.638480 CCCATTAGGCTGGATTTCGA 57.362 50.000 0.00 0.00 38.69 3.71
172 177 2.930950 CCCATTAGGCTGGATTTCGAA 58.069 47.619 0.00 0.00 38.69 3.71
173 178 3.287222 CCCATTAGGCTGGATTTCGAAA 58.713 45.455 13.91 13.91 38.69 3.46
174 179 3.699038 CCCATTAGGCTGGATTTCGAAAA 59.301 43.478 15.66 0.00 38.69 2.29
175 180 4.342092 CCCATTAGGCTGGATTTCGAAAAT 59.658 41.667 15.66 3.62 38.69 1.82
176 181 5.163416 CCCATTAGGCTGGATTTCGAAAATT 60.163 40.000 15.66 0.00 38.69 1.82
177 182 5.979517 CCATTAGGCTGGATTTCGAAAATTC 59.020 40.000 15.66 8.79 38.69 2.17
178 183 6.183360 CCATTAGGCTGGATTTCGAAAATTCT 60.183 38.462 15.66 9.18 38.69 2.40
179 184 7.013274 CCATTAGGCTGGATTTCGAAAATTCTA 59.987 37.037 15.66 6.05 38.69 2.10
180 185 8.571336 CATTAGGCTGGATTTCGAAAATTCTAT 58.429 33.333 15.66 0.00 0.00 1.98
181 186 8.519799 TTAGGCTGGATTTCGAAAATTCTATT 57.480 30.769 15.66 0.00 0.00 1.73
182 187 6.799512 AGGCTGGATTTCGAAAATTCTATTG 58.200 36.000 15.66 0.00 0.00 1.90
183 188 5.460091 GGCTGGATTTCGAAAATTCTATTGC 59.540 40.000 15.66 7.46 0.00 3.56
184 189 5.460091 GCTGGATTTCGAAAATTCTATTGCC 59.540 40.000 15.66 6.04 0.00 4.52
185 190 5.901552 TGGATTTCGAAAATTCTATTGCCC 58.098 37.500 15.66 4.48 0.00 5.36
186 191 5.420421 TGGATTTCGAAAATTCTATTGCCCA 59.580 36.000 15.66 6.73 0.00 5.36
187 192 5.748630 GGATTTCGAAAATTCTATTGCCCAC 59.251 40.000 15.66 0.00 0.00 4.61
188 193 5.975693 TTTCGAAAATTCTATTGCCCACT 57.024 34.783 8.44 0.00 0.00 4.00
189 194 5.560966 TTCGAAAATTCTATTGCCCACTC 57.439 39.130 0.00 0.00 0.00 3.51
190 195 4.584874 TCGAAAATTCTATTGCCCACTCA 58.415 39.130 0.00 0.00 0.00 3.41
191 196 4.635765 TCGAAAATTCTATTGCCCACTCAG 59.364 41.667 0.00 0.00 0.00 3.35
192 197 4.396166 CGAAAATTCTATTGCCCACTCAGT 59.604 41.667 0.00 0.00 0.00 3.41
193 198 5.644644 GAAAATTCTATTGCCCACTCAGTG 58.355 41.667 0.00 0.00 0.00 3.66
207 212 5.852738 CACTCAGTGGATAAGTGAACAAG 57.147 43.478 0.00 0.00 42.37 3.16
208 213 5.300752 CACTCAGTGGATAAGTGAACAAGT 58.699 41.667 0.00 0.00 42.37 3.16
209 214 5.406780 CACTCAGTGGATAAGTGAACAAGTC 59.593 44.000 0.00 0.00 42.37 3.01
210 215 4.894784 TCAGTGGATAAGTGAACAAGTCC 58.105 43.478 0.00 0.00 35.20 3.85
211 216 4.346709 TCAGTGGATAAGTGAACAAGTCCA 59.653 41.667 0.00 0.00 35.20 4.02
212 217 5.013079 TCAGTGGATAAGTGAACAAGTCCAT 59.987 40.000 0.00 0.00 37.98 3.41
213 218 5.122869 CAGTGGATAAGTGAACAAGTCCATG 59.877 44.000 0.00 0.00 37.98 3.66
214 219 5.013079 AGTGGATAAGTGAACAAGTCCATGA 59.987 40.000 0.00 0.00 37.98 3.07
215 220 5.882557 GTGGATAAGTGAACAAGTCCATGAT 59.117 40.000 0.00 0.00 37.98 2.45
216 221 5.882000 TGGATAAGTGAACAAGTCCATGATG 59.118 40.000 0.00 0.00 31.24 3.07
217 222 5.220931 GGATAAGTGAACAAGTCCATGATGC 60.221 44.000 0.00 0.00 0.00 3.91
218 223 2.440409 AGTGAACAAGTCCATGATGCC 58.560 47.619 0.00 0.00 0.00 4.40
219 224 2.161855 GTGAACAAGTCCATGATGCCA 58.838 47.619 0.00 0.00 0.00 4.92
220 225 2.557924 GTGAACAAGTCCATGATGCCAA 59.442 45.455 0.00 0.00 0.00 4.52
221 226 3.194116 GTGAACAAGTCCATGATGCCAAT 59.806 43.478 0.00 0.00 0.00 3.16
222 227 3.833650 TGAACAAGTCCATGATGCCAATT 59.166 39.130 0.00 0.00 0.00 2.32
223 228 4.283978 TGAACAAGTCCATGATGCCAATTT 59.716 37.500 0.00 0.00 0.00 1.82
224 229 4.895668 ACAAGTCCATGATGCCAATTTT 57.104 36.364 0.00 0.00 0.00 1.82
225 230 4.824289 ACAAGTCCATGATGCCAATTTTC 58.176 39.130 0.00 0.00 0.00 2.29
226 231 4.283978 ACAAGTCCATGATGCCAATTTTCA 59.716 37.500 0.00 0.00 0.00 2.69
227 232 4.460948 AGTCCATGATGCCAATTTTCAC 57.539 40.909 0.00 0.00 0.00 3.18
228 233 3.196254 AGTCCATGATGCCAATTTTCACC 59.804 43.478 0.00 0.00 0.00 4.02
229 234 2.166050 TCCATGATGCCAATTTTCACCG 59.834 45.455 0.00 0.00 0.00 4.94
230 235 2.094078 CCATGATGCCAATTTTCACCGT 60.094 45.455 0.00 0.00 0.00 4.83
231 236 2.721274 TGATGCCAATTTTCACCGTG 57.279 45.000 0.00 0.00 0.00 4.94
232 237 1.336702 TGATGCCAATTTTCACCGTGC 60.337 47.619 0.00 0.00 0.00 5.34
233 238 0.968405 ATGCCAATTTTCACCGTGCT 59.032 45.000 0.00 0.00 0.00 4.40
234 239 0.031857 TGCCAATTTTCACCGTGCTG 59.968 50.000 0.00 0.00 0.00 4.41
235 240 1.284297 GCCAATTTTCACCGTGCTGC 61.284 55.000 0.00 0.00 0.00 5.25
236 241 0.031857 CCAATTTTCACCGTGCTGCA 59.968 50.000 0.00 0.00 0.00 4.41
237 242 1.411394 CAATTTTCACCGTGCTGCAG 58.589 50.000 10.11 10.11 0.00 4.41
238 243 1.001487 CAATTTTCACCGTGCTGCAGA 60.001 47.619 20.43 0.00 0.00 4.26
239 244 1.538047 ATTTTCACCGTGCTGCAGAT 58.462 45.000 20.43 0.00 0.00 2.90
240 245 0.874390 TTTTCACCGTGCTGCAGATC 59.126 50.000 20.43 8.23 0.00 2.75
241 246 1.291184 TTTCACCGTGCTGCAGATCG 61.291 55.000 20.43 19.63 0.00 3.69
242 247 2.125952 CACCGTGCTGCAGATCGA 60.126 61.111 20.43 0.00 0.00 3.59
243 248 2.125912 ACCGTGCTGCAGATCGAC 60.126 61.111 20.43 6.72 0.00 4.20
244 249 2.182791 CCGTGCTGCAGATCGACT 59.817 61.111 20.43 0.00 0.00 4.18
245 250 1.446792 CCGTGCTGCAGATCGACTT 60.447 57.895 20.43 0.00 0.00 3.01
246 251 1.690283 CCGTGCTGCAGATCGACTTG 61.690 60.000 20.43 4.44 0.00 3.16
247 252 0.733909 CGTGCTGCAGATCGACTTGA 60.734 55.000 20.43 0.00 0.00 3.02
248 253 0.997932 GTGCTGCAGATCGACTTGAG 59.002 55.000 20.43 0.00 0.00 3.02
249 254 0.890683 TGCTGCAGATCGACTTGAGA 59.109 50.000 20.43 0.00 0.00 3.27
250 255 1.273327 TGCTGCAGATCGACTTGAGAA 59.727 47.619 20.43 0.00 0.00 2.87
251 256 1.925847 GCTGCAGATCGACTTGAGAAG 59.074 52.381 20.43 0.00 0.00 2.85
252 257 2.673610 GCTGCAGATCGACTTGAGAAGT 60.674 50.000 20.43 0.00 46.38 3.01
253 258 3.583806 CTGCAGATCGACTTGAGAAGTT 58.416 45.455 8.42 0.00 43.03 2.66
254 259 3.579709 TGCAGATCGACTTGAGAAGTTC 58.420 45.455 0.00 0.00 43.03 3.01
255 260 3.005791 TGCAGATCGACTTGAGAAGTTCA 59.994 43.478 5.50 0.00 43.03 3.18
256 261 3.611986 GCAGATCGACTTGAGAAGTTCAG 59.388 47.826 5.50 0.00 43.03 3.02
257 262 4.617067 GCAGATCGACTTGAGAAGTTCAGA 60.617 45.833 5.50 0.00 43.03 3.27
258 263 5.465051 CAGATCGACTTGAGAAGTTCAGAA 58.535 41.667 5.50 0.00 43.03 3.02
259 264 6.098679 CAGATCGACTTGAGAAGTTCAGAAT 58.901 40.000 5.50 0.00 43.03 2.40
260 265 6.589523 CAGATCGACTTGAGAAGTTCAGAATT 59.410 38.462 5.50 0.00 43.03 2.17
261 266 6.811170 AGATCGACTTGAGAAGTTCAGAATTC 59.189 38.462 5.50 0.00 43.03 2.17
262 267 6.090483 TCGACTTGAGAAGTTCAGAATTCT 57.910 37.500 0.88 0.88 43.03 2.40
263 268 5.923114 TCGACTTGAGAAGTTCAGAATTCTG 59.077 40.000 26.56 26.56 43.03 3.02
280 285 9.443283 CAGAATTCTGACCATAAATCGATTTTC 57.557 33.333 28.13 18.52 46.59 2.29
281 286 8.338259 AGAATTCTGACCATAAATCGATTTTCG 58.662 33.333 27.10 17.84 42.10 3.46
282 287 5.403897 TCTGACCATAAATCGATTTTCGC 57.596 39.130 27.10 13.39 40.21 4.70
283 288 4.272504 TCTGACCATAAATCGATTTTCGCC 59.727 41.667 27.10 13.76 40.21 5.54
284 289 3.314080 TGACCATAAATCGATTTTCGCCC 59.686 43.478 27.10 14.67 40.21 6.13
285 290 3.551846 ACCATAAATCGATTTTCGCCCT 58.448 40.909 27.10 5.12 40.21 5.19
286 291 4.710324 ACCATAAATCGATTTTCGCCCTA 58.290 39.130 27.10 9.05 40.21 3.53
287 292 4.755123 ACCATAAATCGATTTTCGCCCTAG 59.245 41.667 27.10 10.96 40.21 3.02
288 293 4.994852 CCATAAATCGATTTTCGCCCTAGA 59.005 41.667 27.10 7.61 40.21 2.43
289 294 5.468746 CCATAAATCGATTTTCGCCCTAGAA 59.531 40.000 27.10 6.89 40.21 2.10
290 295 6.347725 CCATAAATCGATTTTCGCCCTAGAAG 60.348 42.308 27.10 4.51 40.21 2.85
291 296 1.935933 TCGATTTTCGCCCTAGAAGC 58.064 50.000 0.00 0.00 40.21 3.86
292 297 0.938008 CGATTTTCGCCCTAGAAGCC 59.062 55.000 0.00 0.00 31.14 4.35
293 298 1.742411 CGATTTTCGCCCTAGAAGCCA 60.742 52.381 0.00 0.00 31.14 4.75
294 299 1.671328 GATTTTCGCCCTAGAAGCCAC 59.329 52.381 0.00 0.00 0.00 5.01
295 300 0.690762 TTTTCGCCCTAGAAGCCACT 59.309 50.000 0.00 0.00 0.00 4.00
296 301 1.563924 TTTCGCCCTAGAAGCCACTA 58.436 50.000 0.00 0.00 0.00 2.74
297 302 1.112113 TTCGCCCTAGAAGCCACTAG 58.888 55.000 7.54 7.54 39.40 2.57
298 303 1.068250 CGCCCTAGAAGCCACTAGC 59.932 63.158 8.67 0.89 38.66 3.42
309 314 2.169832 GCCACTAGCTGTTCAACTCA 57.830 50.000 0.00 0.00 38.99 3.41
310 315 2.704572 GCCACTAGCTGTTCAACTCAT 58.295 47.619 0.00 0.00 38.99 2.90
311 316 3.077359 GCCACTAGCTGTTCAACTCATT 58.923 45.455 0.00 0.00 38.99 2.57
312 317 4.253685 GCCACTAGCTGTTCAACTCATTA 58.746 43.478 0.00 0.00 38.99 1.90
313 318 4.695455 GCCACTAGCTGTTCAACTCATTAA 59.305 41.667 0.00 0.00 38.99 1.40
314 319 5.181245 GCCACTAGCTGTTCAACTCATTAAA 59.819 40.000 0.00 0.00 38.99 1.52
315 320 6.603095 CCACTAGCTGTTCAACTCATTAAAC 58.397 40.000 0.00 0.00 0.00 2.01
316 321 6.299604 CACTAGCTGTTCAACTCATTAAACG 58.700 40.000 0.00 0.00 0.00 3.60
317 322 6.145534 CACTAGCTGTTCAACTCATTAAACGA 59.854 38.462 0.00 0.00 0.00 3.85
318 323 6.704493 ACTAGCTGTTCAACTCATTAAACGAA 59.296 34.615 0.00 0.00 0.00 3.85
319 324 5.748592 AGCTGTTCAACTCATTAAACGAAC 58.251 37.500 0.00 0.00 34.69 3.95
320 325 5.527582 AGCTGTTCAACTCATTAAACGAACT 59.472 36.000 0.00 0.00 35.07 3.01
321 326 6.038271 AGCTGTTCAACTCATTAAACGAACTT 59.962 34.615 0.00 0.00 35.07 2.66
322 327 6.357240 GCTGTTCAACTCATTAAACGAACTTC 59.643 38.462 0.00 0.00 35.07 3.01
323 328 7.548196 TGTTCAACTCATTAAACGAACTTCT 57.452 32.000 0.00 0.00 35.07 2.85
324 329 8.651391 TGTTCAACTCATTAAACGAACTTCTA 57.349 30.769 0.00 0.00 35.07 2.10
325 330 9.100554 TGTTCAACTCATTAAACGAACTTCTAA 57.899 29.630 0.00 0.00 35.07 2.10
328 333 8.717821 TCAACTCATTAAACGAACTTCTAATGG 58.282 33.333 0.00 4.37 34.13 3.16
329 334 8.504005 CAACTCATTAAACGAACTTCTAATGGT 58.496 33.333 0.00 4.77 34.13 3.55
330 335 8.617290 ACTCATTAAACGAACTTCTAATGGTT 57.383 30.769 0.00 0.00 34.13 3.67
331 336 8.718734 ACTCATTAAACGAACTTCTAATGGTTC 58.281 33.333 0.00 0.00 38.60 3.62
332 337 8.610248 TCATTAAACGAACTTCTAATGGTTCA 57.390 30.769 0.00 0.00 41.05 3.18
333 338 8.500773 TCATTAAACGAACTTCTAATGGTTCAC 58.499 33.333 0.00 0.00 41.05 3.18
334 339 7.789273 TTAAACGAACTTCTAATGGTTCACA 57.211 32.000 0.00 0.00 41.05 3.58
335 340 5.668558 AACGAACTTCTAATGGTTCACAC 57.331 39.130 0.00 0.00 41.05 3.82
336 341 4.699637 ACGAACTTCTAATGGTTCACACA 58.300 39.130 0.00 0.00 41.05 3.72
337 342 5.120399 ACGAACTTCTAATGGTTCACACAA 58.880 37.500 0.00 0.00 41.05 3.33
338 343 5.007332 ACGAACTTCTAATGGTTCACACAAC 59.993 40.000 0.00 0.00 41.05 3.32
339 344 5.236478 CGAACTTCTAATGGTTCACACAACT 59.764 40.000 0.00 0.00 41.05 3.16
340 345 6.422701 CGAACTTCTAATGGTTCACACAACTA 59.577 38.462 0.00 0.00 41.05 2.24
341 346 7.117812 CGAACTTCTAATGGTTCACACAACTAT 59.882 37.037 0.00 0.00 41.05 2.12
342 347 9.431887 GAACTTCTAATGGTTCACACAACTATA 57.568 33.333 0.00 0.00 40.79 1.31
343 348 9.959721 AACTTCTAATGGTTCACACAACTATAT 57.040 29.630 0.00 0.00 0.00 0.86
344 349 9.601217 ACTTCTAATGGTTCACACAACTATATC 57.399 33.333 0.00 0.00 0.00 1.63
345 350 8.642908 TTCTAATGGTTCACACAACTATATCG 57.357 34.615 0.00 0.00 0.00 2.92
346 351 5.734855 AATGGTTCACACAACTATATCGC 57.265 39.130 0.00 0.00 0.00 4.58
347 352 4.195225 TGGTTCACACAACTATATCGCA 57.805 40.909 0.00 0.00 0.00 5.10
348 353 4.570930 TGGTTCACACAACTATATCGCAA 58.429 39.130 0.00 0.00 0.00 4.85
349 354 4.998033 TGGTTCACACAACTATATCGCAAA 59.002 37.500 0.00 0.00 0.00 3.68
350 355 5.470437 TGGTTCACACAACTATATCGCAAAA 59.530 36.000 0.00 0.00 0.00 2.44
351 356 6.017026 TGGTTCACACAACTATATCGCAAAAA 60.017 34.615 0.00 0.00 0.00 1.94
376 381 6.688637 AAAAGGTTCACACAACTACTTACC 57.311 37.500 0.00 0.00 0.00 2.85
377 382 5.362105 AAGGTTCACACAACTACTTACCA 57.638 39.130 0.00 0.00 0.00 3.25
378 383 5.362105 AGGTTCACACAACTACTTACCAA 57.638 39.130 0.00 0.00 0.00 3.67
379 384 5.747342 AGGTTCACACAACTACTTACCAAA 58.253 37.500 0.00 0.00 0.00 3.28
380 385 6.362248 AGGTTCACACAACTACTTACCAAAT 58.638 36.000 0.00 0.00 0.00 2.32
381 386 6.262273 AGGTTCACACAACTACTTACCAAATG 59.738 38.462 0.00 0.00 0.00 2.32
382 387 6.261381 GGTTCACACAACTACTTACCAAATGA 59.739 38.462 0.00 0.00 0.00 2.57
383 388 7.352739 GTTCACACAACTACTTACCAAATGAG 58.647 38.462 0.00 0.00 0.00 2.90
384 389 6.822442 TCACACAACTACTTACCAAATGAGA 58.178 36.000 0.00 0.00 0.00 3.27
385 390 6.929049 TCACACAACTACTTACCAAATGAGAG 59.071 38.462 0.00 0.00 0.00 3.20
386 391 5.701290 ACACAACTACTTACCAAATGAGAGC 59.299 40.000 0.00 0.00 0.00 4.09
387 392 5.700832 CACAACTACTTACCAAATGAGAGCA 59.299 40.000 0.00 0.00 0.00 4.26
388 393 5.701290 ACAACTACTTACCAAATGAGAGCAC 59.299 40.000 0.00 0.00 0.00 4.40
389 394 5.483685 ACTACTTACCAAATGAGAGCACA 57.516 39.130 0.00 0.00 0.00 4.57
390 395 5.865085 ACTACTTACCAAATGAGAGCACAA 58.135 37.500 0.00 0.00 0.00 3.33
391 396 5.701290 ACTACTTACCAAATGAGAGCACAAC 59.299 40.000 0.00 0.00 0.00 3.32
392 397 3.821033 ACTTACCAAATGAGAGCACAACC 59.179 43.478 0.00 0.00 0.00 3.77
393 398 1.238439 ACCAAATGAGAGCACAACCG 58.762 50.000 0.00 0.00 0.00 4.44
394 399 1.202758 ACCAAATGAGAGCACAACCGA 60.203 47.619 0.00 0.00 0.00 4.69
395 400 1.879380 CCAAATGAGAGCACAACCGAA 59.121 47.619 0.00 0.00 0.00 4.30
396 401 2.095567 CCAAATGAGAGCACAACCGAAG 60.096 50.000 0.00 0.00 0.00 3.79
397 402 2.549754 CAAATGAGAGCACAACCGAAGT 59.450 45.455 0.00 0.00 0.00 3.01
398 403 2.550830 ATGAGAGCACAACCGAAGTT 57.449 45.000 0.00 0.00 36.33 2.66
399 404 2.325583 TGAGAGCACAACCGAAGTTT 57.674 45.000 0.00 0.00 32.45 2.66
400 405 2.210116 TGAGAGCACAACCGAAGTTTC 58.790 47.619 0.00 0.00 32.45 2.78
401 406 2.158957 TGAGAGCACAACCGAAGTTTCT 60.159 45.455 0.00 0.00 32.45 2.52
402 407 2.213499 AGAGCACAACCGAAGTTTCTG 58.787 47.619 0.00 0.00 32.45 3.02
403 408 1.264288 GAGCACAACCGAAGTTTCTGG 59.736 52.381 0.00 2.62 32.45 3.86
404 409 0.317854 GCACAACCGAAGTTTCTGGC 60.318 55.000 0.00 0.00 32.45 4.85
405 410 1.021202 CACAACCGAAGTTTCTGGCA 58.979 50.000 0.00 0.00 32.45 4.92
406 411 1.021968 ACAACCGAAGTTTCTGGCAC 58.978 50.000 0.00 0.00 32.45 5.01
407 412 0.041312 CAACCGAAGTTTCTGGCACG 60.041 55.000 0.00 0.00 32.45 5.34
408 413 0.463116 AACCGAAGTTTCTGGCACGT 60.463 50.000 0.00 0.00 29.61 4.49
409 414 0.878961 ACCGAAGTTTCTGGCACGTC 60.879 55.000 0.00 0.00 0.00 4.34
410 415 0.878523 CCGAAGTTTCTGGCACGTCA 60.879 55.000 0.00 0.00 0.00 4.35
411 416 0.508641 CGAAGTTTCTGGCACGTCAG 59.491 55.000 0.00 0.00 36.17 3.51
412 417 0.235926 GAAGTTTCTGGCACGTCAGC 59.764 55.000 0.00 0.00 34.91 4.26
420 425 2.661866 GCACGTCAGCCAGAACGT 60.662 61.111 0.00 0.00 35.43 3.99
421 426 2.943345 GCACGTCAGCCAGAACGTG 61.943 63.158 20.15 20.15 45.70 4.49
422 427 1.591594 CACGTCAGCCAGAACGTGT 60.592 57.895 17.20 0.00 41.96 4.49
423 428 1.299926 ACGTCAGCCAGAACGTGTC 60.300 57.895 0.00 0.00 34.38 3.67
424 429 1.299850 CGTCAGCCAGAACGTGTCA 60.300 57.895 0.00 0.00 0.00 3.58
425 430 0.874175 CGTCAGCCAGAACGTGTCAA 60.874 55.000 0.00 0.00 0.00 3.18
426 431 1.512926 GTCAGCCAGAACGTGTCAAT 58.487 50.000 0.00 0.00 0.00 2.57
427 432 1.873591 GTCAGCCAGAACGTGTCAATT 59.126 47.619 0.00 0.00 0.00 2.32
428 433 2.290641 GTCAGCCAGAACGTGTCAATTT 59.709 45.455 0.00 0.00 0.00 1.82
429 434 2.290367 TCAGCCAGAACGTGTCAATTTG 59.710 45.455 0.00 0.00 0.00 2.32
430 435 2.290367 CAGCCAGAACGTGTCAATTTGA 59.710 45.455 0.00 0.00 0.00 2.69
443 448 5.500645 GTCAATTTGACTGTATAAGGGGC 57.499 43.478 19.90 0.00 43.73 5.80
444 449 5.193679 GTCAATTTGACTGTATAAGGGGCT 58.806 41.667 19.90 0.00 43.73 5.19
445 450 6.354130 GTCAATTTGACTGTATAAGGGGCTA 58.646 40.000 19.90 0.00 43.73 3.93
446 451 6.998673 GTCAATTTGACTGTATAAGGGGCTAT 59.001 38.462 19.90 0.00 43.73 2.97
447 452 6.998074 TCAATTTGACTGTATAAGGGGCTATG 59.002 38.462 0.00 0.00 0.00 2.23
448 453 4.351874 TTGACTGTATAAGGGGCTATGC 57.648 45.455 0.00 0.00 0.00 3.14
449 454 3.313791 TGACTGTATAAGGGGCTATGCA 58.686 45.455 0.00 0.00 0.00 3.96
450 455 3.909995 TGACTGTATAAGGGGCTATGCAT 59.090 43.478 3.79 3.79 0.00 3.96
451 456 4.256920 GACTGTATAAGGGGCTATGCATG 58.743 47.826 10.16 0.26 0.00 4.06
452 457 3.012518 CTGTATAAGGGGCTATGCATGC 58.987 50.000 11.82 11.82 0.00 4.06
453 458 2.374839 TGTATAAGGGGCTATGCATGCA 59.625 45.455 25.04 25.04 0.00 3.96
454 459 2.211250 ATAAGGGGCTATGCATGCAG 57.789 50.000 26.69 14.50 0.00 4.41
455 460 0.111061 TAAGGGGCTATGCATGCAGG 59.889 55.000 26.69 20.72 0.00 4.85
456 461 1.648302 AAGGGGCTATGCATGCAGGA 61.648 55.000 26.69 15.24 0.00 3.86
457 462 1.152694 GGGGCTATGCATGCAGGAA 60.153 57.895 26.69 12.82 0.00 3.36
458 463 1.177256 GGGGCTATGCATGCAGGAAG 61.177 60.000 26.69 21.83 0.00 3.46
459 464 1.177256 GGGCTATGCATGCAGGAAGG 61.177 60.000 26.69 13.88 0.00 3.46
460 465 0.179009 GGCTATGCATGCAGGAAGGA 60.179 55.000 26.69 0.00 0.00 3.36
461 466 1.236628 GCTATGCATGCAGGAAGGAG 58.763 55.000 26.69 15.43 0.00 3.69
462 467 1.893544 CTATGCATGCAGGAAGGAGG 58.106 55.000 26.69 5.69 0.00 4.30
463 468 1.419012 CTATGCATGCAGGAAGGAGGA 59.581 52.381 26.69 0.00 0.00 3.71
464 469 0.627451 ATGCATGCAGGAAGGAGGAA 59.373 50.000 26.69 0.00 0.00 3.36
465 470 0.034767 TGCATGCAGGAAGGAGGAAG 60.035 55.000 18.46 0.00 0.00 3.46
466 471 1.382692 GCATGCAGGAAGGAGGAAGC 61.383 60.000 14.21 0.00 0.00 3.86
467 472 0.255318 CATGCAGGAAGGAGGAAGCT 59.745 55.000 0.00 0.00 0.00 3.74
468 473 0.255318 ATGCAGGAAGGAGGAAGCTG 59.745 55.000 0.00 0.00 0.00 4.24
469 474 0.837691 TGCAGGAAGGAGGAAGCTGA 60.838 55.000 0.00 0.00 0.00 4.26
470 475 0.326264 GCAGGAAGGAGGAAGCTGAA 59.674 55.000 0.00 0.00 0.00 3.02
471 476 1.678425 GCAGGAAGGAGGAAGCTGAAG 60.678 57.143 0.00 0.00 0.00 3.02
472 477 0.617935 AGGAAGGAGGAAGCTGAAGC 59.382 55.000 0.00 0.00 42.49 3.86
500 505 0.645868 GCCACACGATCGACTTTAGC 59.354 55.000 24.34 12.46 0.00 3.09
501 506 1.278238 CCACACGATCGACTTTAGCC 58.722 55.000 24.34 0.00 0.00 3.93
502 507 1.135083 CCACACGATCGACTTTAGCCT 60.135 52.381 24.34 0.00 0.00 4.58
503 508 2.607187 CACACGATCGACTTTAGCCTT 58.393 47.619 24.34 0.00 0.00 4.35
504 509 3.428452 CCACACGATCGACTTTAGCCTTA 60.428 47.826 24.34 0.00 0.00 2.69
505 510 4.360563 CACACGATCGACTTTAGCCTTAT 58.639 43.478 24.34 0.00 0.00 1.73
506 511 4.441415 CACACGATCGACTTTAGCCTTATC 59.559 45.833 24.34 0.00 0.00 1.75
507 512 3.982058 CACGATCGACTTTAGCCTTATCC 59.018 47.826 24.34 0.00 0.00 2.59
508 513 3.890147 ACGATCGACTTTAGCCTTATCCT 59.110 43.478 24.34 0.00 0.00 3.24
509 514 4.023021 ACGATCGACTTTAGCCTTATCCTC 60.023 45.833 24.34 0.00 0.00 3.71
510 515 3.984508 TCGACTTTAGCCTTATCCTCG 57.015 47.619 0.00 0.00 0.00 4.63
511 516 2.621998 TCGACTTTAGCCTTATCCTCGG 59.378 50.000 0.00 0.00 0.00 4.63
512 517 2.756829 GACTTTAGCCTTATCCTCGGC 58.243 52.381 0.00 0.00 46.65 5.54
518 523 1.517242 GCCTTATCCTCGGCTTGATG 58.483 55.000 0.00 0.00 42.98 3.07
519 524 1.879796 GCCTTATCCTCGGCTTGATGG 60.880 57.143 0.00 0.00 42.98 3.51
520 525 1.694150 CCTTATCCTCGGCTTGATGGA 59.306 52.381 0.00 0.00 0.00 3.41
521 526 2.304180 CCTTATCCTCGGCTTGATGGAT 59.696 50.000 0.00 0.00 37.90 3.41
522 527 3.244700 CCTTATCCTCGGCTTGATGGATT 60.245 47.826 0.00 0.00 36.57 3.01
523 528 4.020218 CCTTATCCTCGGCTTGATGGATTA 60.020 45.833 0.00 0.00 36.57 1.75
524 529 5.338708 CCTTATCCTCGGCTTGATGGATTAT 60.339 44.000 0.00 0.00 36.57 1.28
525 530 3.407424 TCCTCGGCTTGATGGATTATG 57.593 47.619 0.00 0.00 0.00 1.90
526 531 2.038952 TCCTCGGCTTGATGGATTATGG 59.961 50.000 0.00 0.00 0.00 2.74
527 532 2.038952 CCTCGGCTTGATGGATTATGGA 59.961 50.000 0.00 0.00 0.00 3.41
528 533 3.496692 CCTCGGCTTGATGGATTATGGAA 60.497 47.826 0.00 0.00 0.00 3.53
529 534 4.136796 CTCGGCTTGATGGATTATGGAAA 58.863 43.478 0.00 0.00 0.00 3.13
530 535 4.728772 TCGGCTTGATGGATTATGGAAAT 58.271 39.130 0.00 0.00 0.00 2.17
531 536 4.761739 TCGGCTTGATGGATTATGGAAATC 59.238 41.667 0.00 0.00 0.00 2.17
532 537 4.082571 CGGCTTGATGGATTATGGAAATCC 60.083 45.833 9.38 9.38 44.99 3.01
544 549 1.202114 TGGAAATCCAGCAAATCACGC 59.798 47.619 0.00 0.00 42.01 5.34
545 550 1.202114 GGAAATCCAGCAAATCACGCA 59.798 47.619 0.00 0.00 35.64 5.24
546 551 2.253603 GAAATCCAGCAAATCACGCAC 58.746 47.619 0.00 0.00 0.00 5.34
547 552 1.538047 AATCCAGCAAATCACGCACT 58.462 45.000 0.00 0.00 0.00 4.40
548 553 0.806868 ATCCAGCAAATCACGCACTG 59.193 50.000 0.00 0.00 0.00 3.66
549 554 0.250252 TCCAGCAAATCACGCACTGA 60.250 50.000 0.00 0.00 0.00 3.41
550 555 0.806868 CCAGCAAATCACGCACTGAT 59.193 50.000 0.00 0.00 41.85 2.90
551 556 1.202110 CCAGCAAATCACGCACTGATC 60.202 52.381 0.00 0.00 38.82 2.92
552 557 1.465777 CAGCAAATCACGCACTGATCA 59.534 47.619 0.00 0.00 38.82 2.92
553 558 2.095617 CAGCAAATCACGCACTGATCAA 60.096 45.455 0.00 0.00 38.82 2.57
554 559 2.553602 AGCAAATCACGCACTGATCAAA 59.446 40.909 0.00 0.00 38.82 2.69
555 560 3.004629 AGCAAATCACGCACTGATCAAAA 59.995 39.130 0.00 0.00 38.82 2.44
556 561 3.362831 GCAAATCACGCACTGATCAAAAG 59.637 43.478 0.00 0.00 38.82 2.27
557 562 3.837213 AATCACGCACTGATCAAAAGG 57.163 42.857 0.00 0.00 38.82 3.11
558 563 2.254546 TCACGCACTGATCAAAAGGT 57.745 45.000 0.00 0.00 0.00 3.50
559 564 1.872952 TCACGCACTGATCAAAAGGTG 59.127 47.619 8.14 8.14 0.00 4.00
560 565 1.872952 CACGCACTGATCAAAAGGTGA 59.127 47.619 15.00 0.00 41.67 4.02
570 575 2.938838 TCAAAAGGTGATTTGACGGGT 58.061 42.857 0.00 0.00 42.68 5.28
571 576 4.088056 TCAAAAGGTGATTTGACGGGTA 57.912 40.909 0.00 0.00 42.68 3.69
572 577 4.069304 TCAAAAGGTGATTTGACGGGTAG 58.931 43.478 0.00 0.00 42.68 3.18
573 578 4.069304 CAAAAGGTGATTTGACGGGTAGA 58.931 43.478 0.00 0.00 41.73 2.59
574 579 3.329929 AAGGTGATTTGACGGGTAGAC 57.670 47.619 0.00 0.00 0.00 2.59
575 580 2.537143 AGGTGATTTGACGGGTAGACT 58.463 47.619 0.00 0.00 0.00 3.24
576 581 2.904434 AGGTGATTTGACGGGTAGACTT 59.096 45.455 0.00 0.00 0.00 3.01
577 582 4.091549 AGGTGATTTGACGGGTAGACTTA 58.908 43.478 0.00 0.00 0.00 2.24
578 583 4.081807 AGGTGATTTGACGGGTAGACTTAC 60.082 45.833 0.00 0.00 0.00 2.34
587 592 1.790818 GGTAGACTTACCTGGAGGGG 58.209 60.000 0.00 0.00 45.01 4.79
588 593 1.691801 GGTAGACTTACCTGGAGGGGG 60.692 61.905 0.00 0.00 45.01 5.40
589 594 1.008084 GTAGACTTACCTGGAGGGGGT 59.992 57.143 0.00 0.00 40.27 4.95
590 595 0.252742 AGACTTACCTGGAGGGGGTG 60.253 60.000 0.00 0.00 40.27 4.61
607 612 1.135257 GGTGGATCTGTCACGACTGAG 60.135 57.143 11.64 0.00 41.45 3.35
811 818 6.882610 TGAATGAACTAGCATCAAAACAGT 57.117 33.333 3.21 0.00 0.00 3.55
1234 1249 3.382832 CTCCGGCACCGTCTCCTT 61.383 66.667 8.49 0.00 37.81 3.36
1558 1573 4.787551 TGTTTATGGTATTCAGCCCGATT 58.212 39.130 0.00 0.00 0.00 3.34
1663 1678 1.288508 TTGGGAGGGCCTATGCACAT 61.289 55.000 5.73 0.00 46.13 3.21
2048 2334 2.505557 GCAGCGCGTACCGTTACT 60.506 61.111 8.43 0.00 39.71 2.24
2119 2407 3.062466 CTGACCGTCGCCCTGAGA 61.062 66.667 0.00 0.00 0.00 3.27
2363 2651 1.669115 CAACGACAGGGCAGACCAG 60.669 63.158 0.00 0.00 43.89 4.00
2426 2714 6.590292 CGTGAAGTGTTGATATTGGTAGACTT 59.410 38.462 0.00 0.00 0.00 3.01
2629 2917 2.693074 TCGCTAGGCTGTTATGACATGA 59.307 45.455 0.00 0.00 34.72 3.07
2909 3200 2.288640 ACGAGTACCAGGACCTTTTTCG 60.289 50.000 0.00 0.20 0.00 3.46
3268 3561 1.133136 ACCTACGGGCTGGATATCACT 60.133 52.381 4.83 0.00 35.63 3.41
3498 3791 2.093764 CCGAGATCTTCTGGCTCAAGTT 60.094 50.000 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.865788 GCGCAAAGAACCATGCCTCA 61.866 55.000 0.30 0.00 39.39 3.86
29 34 4.022416 AGCGTCAAAATGCCACTAAATCAA 60.022 37.500 0.00 0.00 38.23 2.57
30 35 3.505680 AGCGTCAAAATGCCACTAAATCA 59.494 39.130 0.00 0.00 38.23 2.57
31 36 4.096732 AGCGTCAAAATGCCACTAAATC 57.903 40.909 0.00 0.00 38.23 2.17
32 37 4.519540 AAGCGTCAAAATGCCACTAAAT 57.480 36.364 0.00 0.00 38.23 1.40
33 38 4.314740 AAAGCGTCAAAATGCCACTAAA 57.685 36.364 0.00 0.00 38.23 1.85
34 39 4.083003 CCTAAAGCGTCAAAATGCCACTAA 60.083 41.667 0.00 0.00 38.23 2.24
35 40 3.438781 CCTAAAGCGTCAAAATGCCACTA 59.561 43.478 0.00 0.00 38.23 2.74
36 41 2.228822 CCTAAAGCGTCAAAATGCCACT 59.771 45.455 0.00 0.00 38.23 4.00
37 42 2.595386 CCTAAAGCGTCAAAATGCCAC 58.405 47.619 0.00 0.00 38.23 5.01
38 43 1.067915 GCCTAAAGCGTCAAAATGCCA 60.068 47.619 0.00 0.00 38.23 4.92
39 44 1.629013 GCCTAAAGCGTCAAAATGCC 58.371 50.000 0.00 0.00 38.23 4.40
50 55 2.565834 TCCCCTATATCACGCCTAAAGC 59.434 50.000 0.00 0.00 38.52 3.51
51 56 4.283722 ACTTCCCCTATATCACGCCTAAAG 59.716 45.833 0.00 0.00 0.00 1.85
52 57 4.228824 ACTTCCCCTATATCACGCCTAAA 58.771 43.478 0.00 0.00 0.00 1.85
53 58 3.830755 GACTTCCCCTATATCACGCCTAA 59.169 47.826 0.00 0.00 0.00 2.69
54 59 3.428532 GACTTCCCCTATATCACGCCTA 58.571 50.000 0.00 0.00 0.00 3.93
55 60 2.249139 GACTTCCCCTATATCACGCCT 58.751 52.381 0.00 0.00 0.00 5.52
56 61 1.275573 GGACTTCCCCTATATCACGCC 59.724 57.143 0.00 0.00 0.00 5.68
57 62 2.745515 GGACTTCCCCTATATCACGC 57.254 55.000 0.00 0.00 0.00 5.34
80 85 1.445582 GTCGTTAGTGGTGGAGCCG 60.446 63.158 0.00 0.00 41.21 5.52
81 86 1.445582 CGTCGTTAGTGGTGGAGCC 60.446 63.158 0.00 0.00 37.90 4.70
82 87 0.731855 GTCGTCGTTAGTGGTGGAGC 60.732 60.000 0.00 0.00 0.00 4.70
83 88 0.109412 GGTCGTCGTTAGTGGTGGAG 60.109 60.000 0.00 0.00 0.00 3.86
84 89 0.538057 AGGTCGTCGTTAGTGGTGGA 60.538 55.000 0.00 0.00 0.00 4.02
85 90 1.167851 TAGGTCGTCGTTAGTGGTGG 58.832 55.000 0.00 0.00 0.00 4.61
86 91 2.995466 TTAGGTCGTCGTTAGTGGTG 57.005 50.000 0.00 0.00 0.00 4.17
87 92 3.068024 TGTTTTAGGTCGTCGTTAGTGGT 59.932 43.478 0.00 0.00 0.00 4.16
88 93 3.641648 TGTTTTAGGTCGTCGTTAGTGG 58.358 45.455 0.00 0.00 0.00 4.00
89 94 5.176223 ACAATGTTTTAGGTCGTCGTTAGTG 59.824 40.000 0.00 0.00 0.00 2.74
90 95 5.291971 ACAATGTTTTAGGTCGTCGTTAGT 58.708 37.500 0.00 0.00 0.00 2.24
91 96 5.403166 TGACAATGTTTTAGGTCGTCGTTAG 59.597 40.000 0.00 0.00 33.04 2.34
92 97 5.288015 TGACAATGTTTTAGGTCGTCGTTA 58.712 37.500 0.00 0.00 33.04 3.18
93 98 4.121317 TGACAATGTTTTAGGTCGTCGTT 58.879 39.130 0.00 0.00 33.04 3.85
94 99 3.719924 TGACAATGTTTTAGGTCGTCGT 58.280 40.909 0.00 0.00 33.04 4.34
95 100 4.921470 ATGACAATGTTTTAGGTCGTCG 57.079 40.909 0.00 0.00 33.04 5.12
96 101 5.851177 CACAATGACAATGTTTTAGGTCGTC 59.149 40.000 0.00 0.00 33.04 4.20
97 102 5.298276 ACACAATGACAATGTTTTAGGTCGT 59.702 36.000 0.00 0.00 33.04 4.34
98 103 5.757886 ACACAATGACAATGTTTTAGGTCG 58.242 37.500 0.00 0.00 33.04 4.79
99 104 6.734137 TGACACAATGACAATGTTTTAGGTC 58.266 36.000 0.00 0.00 0.00 3.85
100 105 6.707440 TGACACAATGACAATGTTTTAGGT 57.293 33.333 0.00 0.00 0.00 3.08
101 106 8.417780 TTTTGACACAATGACAATGTTTTAGG 57.582 30.769 0.00 0.00 32.68 2.69
152 157 2.638480 TCGAAATCCAGCCTAATGGG 57.362 50.000 0.00 0.00 41.01 4.00
153 158 4.981806 TTTTCGAAATCCAGCCTAATGG 57.018 40.909 12.12 0.00 42.11 3.16
154 159 6.799512 AGAATTTTCGAAATCCAGCCTAATG 58.200 36.000 12.12 0.00 0.00 1.90
155 160 8.697507 ATAGAATTTTCGAAATCCAGCCTAAT 57.302 30.769 12.12 0.00 0.00 1.73
156 161 8.405531 CAATAGAATTTTCGAAATCCAGCCTAA 58.594 33.333 12.12 0.00 0.00 2.69
157 162 7.468631 GCAATAGAATTTTCGAAATCCAGCCTA 60.469 37.037 12.12 8.08 0.00 3.93
158 163 6.681368 GCAATAGAATTTTCGAAATCCAGCCT 60.681 38.462 12.12 6.26 0.00 4.58
159 164 5.460091 GCAATAGAATTTTCGAAATCCAGCC 59.540 40.000 12.12 0.00 0.00 4.85
160 165 5.460091 GGCAATAGAATTTTCGAAATCCAGC 59.540 40.000 12.12 8.50 0.00 4.85
161 166 5.979517 GGGCAATAGAATTTTCGAAATCCAG 59.020 40.000 12.12 0.00 0.00 3.86
162 167 5.420421 TGGGCAATAGAATTTTCGAAATCCA 59.580 36.000 12.12 0.00 0.00 3.41
163 168 5.748630 GTGGGCAATAGAATTTTCGAAATCC 59.251 40.000 12.12 4.16 0.00 3.01
164 169 6.564328 AGTGGGCAATAGAATTTTCGAAATC 58.436 36.000 12.12 7.41 0.00 2.17
165 170 6.152661 TGAGTGGGCAATAGAATTTTCGAAAT 59.847 34.615 12.12 0.00 0.00 2.17
166 171 5.475220 TGAGTGGGCAATAGAATTTTCGAAA 59.525 36.000 6.47 6.47 0.00 3.46
167 172 5.007034 TGAGTGGGCAATAGAATTTTCGAA 58.993 37.500 0.00 0.00 0.00 3.71
168 173 4.584874 TGAGTGGGCAATAGAATTTTCGA 58.415 39.130 0.00 0.00 0.00 3.71
169 174 4.396166 ACTGAGTGGGCAATAGAATTTTCG 59.604 41.667 0.00 0.00 0.00 3.46
170 175 5.644644 CACTGAGTGGGCAATAGAATTTTC 58.355 41.667 4.28 0.00 0.00 2.29
171 176 5.649782 CACTGAGTGGGCAATAGAATTTT 57.350 39.130 4.28 0.00 0.00 1.82
185 190 5.300752 ACTTGTTCACTTATCCACTGAGTG 58.699 41.667 5.42 5.42 41.61 3.51
186 191 5.511545 GGACTTGTTCACTTATCCACTGAGT 60.512 44.000 0.00 0.00 0.00 3.41
187 192 4.932200 GGACTTGTTCACTTATCCACTGAG 59.068 45.833 0.00 0.00 0.00 3.35
188 193 4.346709 TGGACTTGTTCACTTATCCACTGA 59.653 41.667 0.00 0.00 31.30 3.41
189 194 4.641396 TGGACTTGTTCACTTATCCACTG 58.359 43.478 0.00 0.00 31.30 3.66
190 195 4.974645 TGGACTTGTTCACTTATCCACT 57.025 40.909 0.00 0.00 31.30 4.00
191 196 5.245531 TCATGGACTTGTTCACTTATCCAC 58.754 41.667 0.00 0.00 38.99 4.02
192 197 5.497464 TCATGGACTTGTTCACTTATCCA 57.503 39.130 0.00 0.00 40.39 3.41
193 198 5.220931 GCATCATGGACTTGTTCACTTATCC 60.221 44.000 0.00 0.00 0.00 2.59
194 199 5.220931 GGCATCATGGACTTGTTCACTTATC 60.221 44.000 0.00 0.00 0.00 1.75
195 200 4.641989 GGCATCATGGACTTGTTCACTTAT 59.358 41.667 0.00 0.00 0.00 1.73
196 201 4.009675 GGCATCATGGACTTGTTCACTTA 58.990 43.478 0.00 0.00 0.00 2.24
197 202 2.821969 GGCATCATGGACTTGTTCACTT 59.178 45.455 0.00 0.00 0.00 3.16
198 203 2.224843 TGGCATCATGGACTTGTTCACT 60.225 45.455 0.00 0.00 0.00 3.41
199 204 2.161855 TGGCATCATGGACTTGTTCAC 58.838 47.619 0.00 0.00 0.00 3.18
200 205 2.583024 TGGCATCATGGACTTGTTCA 57.417 45.000 0.00 0.00 0.00 3.18
201 206 4.460948 AATTGGCATCATGGACTTGTTC 57.539 40.909 0.00 0.00 0.00 3.18
202 207 4.895668 AAATTGGCATCATGGACTTGTT 57.104 36.364 0.00 0.00 0.00 2.83
203 208 4.283978 TGAAAATTGGCATCATGGACTTGT 59.716 37.500 0.00 0.00 0.00 3.16
204 209 4.628333 GTGAAAATTGGCATCATGGACTTG 59.372 41.667 0.00 0.00 0.00 3.16
205 210 4.322953 GGTGAAAATTGGCATCATGGACTT 60.323 41.667 0.00 0.00 0.00 3.01
206 211 3.196254 GGTGAAAATTGGCATCATGGACT 59.804 43.478 0.00 0.00 0.00 3.85
207 212 3.524541 GGTGAAAATTGGCATCATGGAC 58.475 45.455 0.00 0.00 0.00 4.02
208 213 2.166050 CGGTGAAAATTGGCATCATGGA 59.834 45.455 0.00 0.00 0.00 3.41
209 214 2.094078 ACGGTGAAAATTGGCATCATGG 60.094 45.455 0.00 0.00 0.00 3.66
210 215 2.924926 CACGGTGAAAATTGGCATCATG 59.075 45.455 0.74 0.00 0.00 3.07
211 216 2.674747 GCACGGTGAAAATTGGCATCAT 60.675 45.455 13.29 0.00 0.00 2.45
212 217 1.336702 GCACGGTGAAAATTGGCATCA 60.337 47.619 13.29 0.00 0.00 3.07
213 218 1.067635 AGCACGGTGAAAATTGGCATC 60.068 47.619 13.29 0.00 0.00 3.91
214 219 0.968405 AGCACGGTGAAAATTGGCAT 59.032 45.000 13.29 0.00 0.00 4.40
215 220 0.031857 CAGCACGGTGAAAATTGGCA 59.968 50.000 13.29 0.00 0.00 4.92
216 221 1.284297 GCAGCACGGTGAAAATTGGC 61.284 55.000 13.29 0.21 0.00 4.52
217 222 0.031857 TGCAGCACGGTGAAAATTGG 59.968 50.000 13.29 0.00 0.00 3.16
218 223 1.001487 TCTGCAGCACGGTGAAAATTG 60.001 47.619 13.29 2.86 0.00 2.32
219 224 1.317613 TCTGCAGCACGGTGAAAATT 58.682 45.000 13.29 0.00 0.00 1.82
220 225 1.470098 GATCTGCAGCACGGTGAAAAT 59.530 47.619 13.29 0.00 0.00 1.82
221 226 0.874390 GATCTGCAGCACGGTGAAAA 59.126 50.000 13.29 0.00 0.00 2.29
222 227 1.291184 CGATCTGCAGCACGGTGAAA 61.291 55.000 13.29 0.00 0.00 2.69
223 228 1.737735 CGATCTGCAGCACGGTGAA 60.738 57.895 13.29 0.00 0.00 3.18
224 229 2.125952 CGATCTGCAGCACGGTGA 60.126 61.111 13.29 0.00 0.00 4.02
225 230 2.125952 TCGATCTGCAGCACGGTG 60.126 61.111 23.92 3.15 0.00 4.94
226 231 2.125912 GTCGATCTGCAGCACGGT 60.126 61.111 23.92 4.35 0.00 4.83
227 232 1.446792 AAGTCGATCTGCAGCACGG 60.447 57.895 23.92 9.26 0.00 4.94
228 233 0.733909 TCAAGTCGATCTGCAGCACG 60.734 55.000 20.46 20.46 0.00 5.34
229 234 0.997932 CTCAAGTCGATCTGCAGCAC 59.002 55.000 9.47 4.32 0.00 4.40
230 235 0.890683 TCTCAAGTCGATCTGCAGCA 59.109 50.000 9.47 0.00 0.00 4.41
231 236 1.925847 CTTCTCAAGTCGATCTGCAGC 59.074 52.381 9.47 0.00 0.00 5.25
232 237 3.229276 ACTTCTCAAGTCGATCTGCAG 57.771 47.619 7.63 7.63 37.02 4.41
233 238 3.005791 TGAACTTCTCAAGTCGATCTGCA 59.994 43.478 0.00 0.00 41.91 4.41
234 239 3.579709 TGAACTTCTCAAGTCGATCTGC 58.420 45.455 0.00 0.00 41.91 4.26
235 240 5.053140 TCTGAACTTCTCAAGTCGATCTG 57.947 43.478 0.00 0.00 41.91 2.90
236 241 5.713792 TTCTGAACTTCTCAAGTCGATCT 57.286 39.130 0.00 0.00 41.91 2.75
237 242 6.811170 AGAATTCTGAACTTCTCAAGTCGATC 59.189 38.462 7.30 0.00 41.91 3.69
238 243 6.589523 CAGAATTCTGAACTTCTCAAGTCGAT 59.410 38.462 28.13 0.00 46.59 3.59
239 244 5.923114 CAGAATTCTGAACTTCTCAAGTCGA 59.077 40.000 28.13 0.00 46.59 4.20
240 245 6.150738 CAGAATTCTGAACTTCTCAAGTCG 57.849 41.667 28.13 0.00 46.59 4.18
254 259 9.443283 GAAAATCGATTTATGGTCAGAATTCTG 57.557 33.333 26.56 26.56 45.08 3.02
255 260 8.338259 CGAAAATCGATTTATGGTCAGAATTCT 58.662 33.333 22.99 0.88 43.74 2.40
256 261 7.112148 GCGAAAATCGATTTATGGTCAGAATTC 59.888 37.037 22.99 11.30 43.74 2.17
257 262 6.912591 GCGAAAATCGATTTATGGTCAGAATT 59.087 34.615 22.99 3.52 43.74 2.17
258 263 6.430451 GCGAAAATCGATTTATGGTCAGAAT 58.570 36.000 22.99 4.04 43.74 2.40
259 264 5.220777 GGCGAAAATCGATTTATGGTCAGAA 60.221 40.000 22.99 0.00 43.74 3.02
260 265 4.272504 GGCGAAAATCGATTTATGGTCAGA 59.727 41.667 22.99 0.00 43.74 3.27
261 266 4.527564 GGCGAAAATCGATTTATGGTCAG 58.472 43.478 22.99 13.32 43.74 3.51
262 267 3.314080 GGGCGAAAATCGATTTATGGTCA 59.686 43.478 22.99 0.00 43.74 4.02
263 268 3.564225 AGGGCGAAAATCGATTTATGGTC 59.436 43.478 22.99 15.37 43.74 4.02
264 269 3.551846 AGGGCGAAAATCGATTTATGGT 58.448 40.909 22.99 8.13 43.74 3.55
265 270 4.994852 TCTAGGGCGAAAATCGATTTATGG 59.005 41.667 22.99 15.47 43.74 2.74
266 271 6.539649 TTCTAGGGCGAAAATCGATTTATG 57.460 37.500 22.99 18.21 43.74 1.90
267 272 5.179555 GCTTCTAGGGCGAAAATCGATTTAT 59.820 40.000 22.99 13.32 43.74 1.40
268 273 4.510340 GCTTCTAGGGCGAAAATCGATTTA 59.490 41.667 22.99 5.53 43.74 1.40
269 274 3.312697 GCTTCTAGGGCGAAAATCGATTT 59.687 43.478 17.60 17.60 43.74 2.17
270 275 2.872858 GCTTCTAGGGCGAAAATCGATT 59.127 45.455 4.39 4.39 43.74 3.34
271 276 2.484889 GCTTCTAGGGCGAAAATCGAT 58.515 47.619 3.61 0.00 43.74 3.59
272 277 1.472728 GGCTTCTAGGGCGAAAATCGA 60.473 52.381 3.61 0.00 43.74 3.59
273 278 0.938008 GGCTTCTAGGGCGAAAATCG 59.062 55.000 0.00 0.00 43.89 3.34
274 279 1.671328 GTGGCTTCTAGGGCGAAAATC 59.329 52.381 0.00 0.00 34.31 2.17
275 280 1.282157 AGTGGCTTCTAGGGCGAAAAT 59.718 47.619 0.00 0.00 34.31 1.82
276 281 0.690762 AGTGGCTTCTAGGGCGAAAA 59.309 50.000 0.00 0.00 34.31 2.29
277 282 1.480954 CTAGTGGCTTCTAGGGCGAAA 59.519 52.381 8.63 0.00 35.20 3.46
278 283 1.112113 CTAGTGGCTTCTAGGGCGAA 58.888 55.000 8.63 0.00 35.20 4.70
279 284 1.392710 GCTAGTGGCTTCTAGGGCGA 61.393 60.000 15.13 0.00 38.17 5.54
280 285 1.068250 GCTAGTGGCTTCTAGGGCG 59.932 63.158 15.13 0.00 38.17 6.13
290 295 2.169832 TGAGTTGAACAGCTAGTGGC 57.830 50.000 0.00 0.00 42.19 5.01
291 296 6.603095 GTTTAATGAGTTGAACAGCTAGTGG 58.397 40.000 0.00 0.00 34.83 4.00
292 297 6.145534 TCGTTTAATGAGTTGAACAGCTAGTG 59.854 38.462 0.00 0.00 34.49 2.74
293 298 6.220930 TCGTTTAATGAGTTGAACAGCTAGT 58.779 36.000 0.00 0.00 34.49 2.57
294 299 6.706055 TCGTTTAATGAGTTGAACAGCTAG 57.294 37.500 0.00 0.00 34.49 3.42
295 300 6.704493 AGTTCGTTTAATGAGTTGAACAGCTA 59.296 34.615 0.00 0.00 38.46 3.32
296 301 5.527582 AGTTCGTTTAATGAGTTGAACAGCT 59.472 36.000 0.00 0.00 38.46 4.24
297 302 5.748592 AGTTCGTTTAATGAGTTGAACAGC 58.251 37.500 0.00 0.00 38.46 4.40
298 303 7.630924 AGAAGTTCGTTTAATGAGTTGAACAG 58.369 34.615 0.00 0.00 38.46 3.16
299 304 7.548196 AGAAGTTCGTTTAATGAGTTGAACA 57.452 32.000 0.00 0.00 38.46 3.18
302 307 8.717821 CCATTAGAAGTTCGTTTAATGAGTTGA 58.282 33.333 18.23 0.00 36.21 3.18
303 308 8.504005 ACCATTAGAAGTTCGTTTAATGAGTTG 58.496 33.333 18.23 8.91 36.21 3.16
304 309 8.617290 ACCATTAGAAGTTCGTTTAATGAGTT 57.383 30.769 18.23 5.97 36.21 3.01
305 310 8.617290 AACCATTAGAAGTTCGTTTAATGAGT 57.383 30.769 18.23 13.41 36.21 3.41
306 311 8.717821 TGAACCATTAGAAGTTCGTTTAATGAG 58.282 33.333 18.23 13.00 44.29 2.90
307 312 8.500773 GTGAACCATTAGAAGTTCGTTTAATGA 58.499 33.333 18.23 3.29 44.29 2.57
308 313 8.286800 TGTGAACCATTAGAAGTTCGTTTAATG 58.713 33.333 12.94 12.94 44.29 1.90
309 314 8.287503 GTGTGAACCATTAGAAGTTCGTTTAAT 58.712 33.333 0.00 0.00 44.29 1.40
310 315 7.280428 TGTGTGAACCATTAGAAGTTCGTTTAA 59.720 33.333 0.00 0.00 44.29 1.52
311 316 6.762187 TGTGTGAACCATTAGAAGTTCGTTTA 59.238 34.615 0.00 0.00 44.29 2.01
312 317 5.587043 TGTGTGAACCATTAGAAGTTCGTTT 59.413 36.000 0.00 0.00 44.29 3.60
313 318 5.120399 TGTGTGAACCATTAGAAGTTCGTT 58.880 37.500 0.00 0.00 44.29 3.85
314 319 4.699637 TGTGTGAACCATTAGAAGTTCGT 58.300 39.130 0.00 0.00 44.29 3.85
315 320 5.236478 AGTTGTGTGAACCATTAGAAGTTCG 59.764 40.000 0.00 0.00 44.29 3.95
316 321 6.619801 AGTTGTGTGAACCATTAGAAGTTC 57.380 37.500 0.00 0.00 42.20 3.01
317 322 9.959721 ATATAGTTGTGTGAACCATTAGAAGTT 57.040 29.630 0.00 0.00 0.00 2.66
318 323 9.601217 GATATAGTTGTGTGAACCATTAGAAGT 57.399 33.333 0.00 0.00 0.00 3.01
319 324 8.755941 CGATATAGTTGTGTGAACCATTAGAAG 58.244 37.037 0.00 0.00 0.00 2.85
320 325 7.223971 GCGATATAGTTGTGTGAACCATTAGAA 59.776 37.037 0.00 0.00 0.00 2.10
321 326 6.700081 GCGATATAGTTGTGTGAACCATTAGA 59.300 38.462 0.00 0.00 0.00 2.10
322 327 6.478673 TGCGATATAGTTGTGTGAACCATTAG 59.521 38.462 0.00 0.00 0.00 1.73
323 328 6.342111 TGCGATATAGTTGTGTGAACCATTA 58.658 36.000 0.00 0.00 0.00 1.90
324 329 5.182487 TGCGATATAGTTGTGTGAACCATT 58.818 37.500 0.00 0.00 0.00 3.16
325 330 4.765273 TGCGATATAGTTGTGTGAACCAT 58.235 39.130 0.00 0.00 0.00 3.55
326 331 4.195225 TGCGATATAGTTGTGTGAACCA 57.805 40.909 0.00 0.00 0.00 3.67
327 332 5.539582 TTTGCGATATAGTTGTGTGAACC 57.460 39.130 0.00 0.00 0.00 3.62
352 357 6.660094 TGGTAAGTAGTTGTGTGAACCTTTTT 59.340 34.615 0.00 0.00 0.00 1.94
353 358 6.181908 TGGTAAGTAGTTGTGTGAACCTTTT 58.818 36.000 0.00 0.00 0.00 2.27
354 359 5.747342 TGGTAAGTAGTTGTGTGAACCTTT 58.253 37.500 0.00 0.00 0.00 3.11
355 360 5.362105 TGGTAAGTAGTTGTGTGAACCTT 57.638 39.130 0.00 0.00 0.00 3.50
356 361 5.362105 TTGGTAAGTAGTTGTGTGAACCT 57.638 39.130 0.00 0.00 0.00 3.50
357 362 6.261381 TCATTTGGTAAGTAGTTGTGTGAACC 59.739 38.462 0.00 0.00 0.00 3.62
358 363 7.225931 TCTCATTTGGTAAGTAGTTGTGTGAAC 59.774 37.037 0.00 0.00 0.00 3.18
359 364 7.276658 TCTCATTTGGTAAGTAGTTGTGTGAA 58.723 34.615 0.00 0.00 0.00 3.18
360 365 6.822442 TCTCATTTGGTAAGTAGTTGTGTGA 58.178 36.000 0.00 0.00 0.00 3.58
361 366 6.347725 GCTCTCATTTGGTAAGTAGTTGTGTG 60.348 42.308 0.00 0.00 0.00 3.82
362 367 5.701290 GCTCTCATTTGGTAAGTAGTTGTGT 59.299 40.000 0.00 0.00 0.00 3.72
363 368 5.700832 TGCTCTCATTTGGTAAGTAGTTGTG 59.299 40.000 0.00 0.00 0.00 3.33
364 369 5.701290 GTGCTCTCATTTGGTAAGTAGTTGT 59.299 40.000 0.00 0.00 0.00 3.32
365 370 5.700832 TGTGCTCTCATTTGGTAAGTAGTTG 59.299 40.000 0.00 0.00 0.00 3.16
366 371 5.865085 TGTGCTCTCATTTGGTAAGTAGTT 58.135 37.500 0.00 0.00 0.00 2.24
367 372 5.483685 TGTGCTCTCATTTGGTAAGTAGT 57.516 39.130 0.00 0.00 0.00 2.73
368 373 5.122396 GGTTGTGCTCTCATTTGGTAAGTAG 59.878 44.000 0.00 0.00 0.00 2.57
369 374 5.001232 GGTTGTGCTCTCATTTGGTAAGTA 58.999 41.667 0.00 0.00 0.00 2.24
370 375 3.821033 GGTTGTGCTCTCATTTGGTAAGT 59.179 43.478 0.00 0.00 0.00 2.24
371 376 3.120199 CGGTTGTGCTCTCATTTGGTAAG 60.120 47.826 0.00 0.00 0.00 2.34
372 377 2.811431 CGGTTGTGCTCTCATTTGGTAA 59.189 45.455 0.00 0.00 0.00 2.85
373 378 2.037902 TCGGTTGTGCTCTCATTTGGTA 59.962 45.455 0.00 0.00 0.00 3.25
374 379 1.202758 TCGGTTGTGCTCTCATTTGGT 60.203 47.619 0.00 0.00 0.00 3.67
375 380 1.522668 TCGGTTGTGCTCTCATTTGG 58.477 50.000 0.00 0.00 0.00 3.28
376 381 2.549754 ACTTCGGTTGTGCTCTCATTTG 59.450 45.455 0.00 0.00 0.00 2.32
377 382 2.851195 ACTTCGGTTGTGCTCTCATTT 58.149 42.857 0.00 0.00 0.00 2.32
378 383 2.550830 ACTTCGGTTGTGCTCTCATT 57.449 45.000 0.00 0.00 0.00 2.57
379 384 2.550830 AACTTCGGTTGTGCTCTCAT 57.449 45.000 0.00 0.00 36.72 2.90
380 385 2.158957 AGAAACTTCGGTTGTGCTCTCA 60.159 45.455 0.00 0.00 38.30 3.27
381 386 2.221981 CAGAAACTTCGGTTGTGCTCTC 59.778 50.000 0.00 0.00 38.30 3.20
382 387 2.213499 CAGAAACTTCGGTTGTGCTCT 58.787 47.619 0.00 0.00 38.30 4.09
383 388 1.264288 CCAGAAACTTCGGTTGTGCTC 59.736 52.381 0.00 0.00 38.30 4.26
384 389 1.308998 CCAGAAACTTCGGTTGTGCT 58.691 50.000 0.00 0.00 38.30 4.40
385 390 0.317854 GCCAGAAACTTCGGTTGTGC 60.318 55.000 0.00 0.00 38.30 4.57
386 391 1.021202 TGCCAGAAACTTCGGTTGTG 58.979 50.000 0.00 0.00 38.30 3.33
387 392 1.021968 GTGCCAGAAACTTCGGTTGT 58.978 50.000 0.00 0.00 38.30 3.32
388 393 0.041312 CGTGCCAGAAACTTCGGTTG 60.041 55.000 0.00 0.00 38.30 3.77
389 394 0.463116 ACGTGCCAGAAACTTCGGTT 60.463 50.000 0.00 0.00 40.27 4.44
390 395 0.878961 GACGTGCCAGAAACTTCGGT 60.879 55.000 0.00 0.00 0.00 4.69
391 396 0.878523 TGACGTGCCAGAAACTTCGG 60.879 55.000 0.00 0.00 0.00 4.30
392 397 0.508641 CTGACGTGCCAGAAACTTCG 59.491 55.000 0.00 0.00 36.29 3.79
393 398 0.235926 GCTGACGTGCCAGAAACTTC 59.764 55.000 8.35 0.00 36.29 3.01
394 399 2.321213 GCTGACGTGCCAGAAACTT 58.679 52.632 8.35 0.00 36.29 2.66
395 400 4.049393 GCTGACGTGCCAGAAACT 57.951 55.556 8.35 0.00 36.29 2.66
403 408 2.661866 ACGTTCTGGCTGACGTGC 60.662 61.111 16.41 0.00 37.44 5.34
405 410 1.299926 GACACGTTCTGGCTGACGT 60.300 57.895 13.17 13.17 39.55 4.34
406 411 0.874175 TTGACACGTTCTGGCTGACG 60.874 55.000 12.21 12.21 0.00 4.35
407 412 1.512926 ATTGACACGTTCTGGCTGAC 58.487 50.000 0.00 0.00 0.00 3.51
408 413 2.254546 AATTGACACGTTCTGGCTGA 57.745 45.000 0.00 0.00 0.00 4.26
409 414 2.290367 TCAAATTGACACGTTCTGGCTG 59.710 45.455 0.00 0.00 0.00 4.85
410 415 2.290641 GTCAAATTGACACGTTCTGGCT 59.709 45.455 20.08 0.00 46.22 4.75
411 416 2.650608 GTCAAATTGACACGTTCTGGC 58.349 47.619 20.08 0.00 46.22 4.85
422 427 5.450818 AGCCCCTTATACAGTCAAATTGA 57.549 39.130 0.00 0.00 0.00 2.57
423 428 6.294176 GCATAGCCCCTTATACAGTCAAATTG 60.294 42.308 0.00 0.00 0.00 2.32
424 429 5.770162 GCATAGCCCCTTATACAGTCAAATT 59.230 40.000 0.00 0.00 0.00 1.82
425 430 5.163099 TGCATAGCCCCTTATACAGTCAAAT 60.163 40.000 0.00 0.00 0.00 2.32
426 431 4.165180 TGCATAGCCCCTTATACAGTCAAA 59.835 41.667 0.00 0.00 0.00 2.69
427 432 3.714280 TGCATAGCCCCTTATACAGTCAA 59.286 43.478 0.00 0.00 0.00 3.18
428 433 3.313791 TGCATAGCCCCTTATACAGTCA 58.686 45.455 0.00 0.00 0.00 3.41
429 434 4.256920 CATGCATAGCCCCTTATACAGTC 58.743 47.826 0.00 0.00 0.00 3.51
430 435 3.560025 GCATGCATAGCCCCTTATACAGT 60.560 47.826 14.21 0.00 0.00 3.55
431 436 3.012518 GCATGCATAGCCCCTTATACAG 58.987 50.000 14.21 0.00 0.00 2.74
432 437 2.374839 TGCATGCATAGCCCCTTATACA 59.625 45.455 18.46 0.00 0.00 2.29
433 438 3.012518 CTGCATGCATAGCCCCTTATAC 58.987 50.000 22.97 0.00 0.00 1.47
434 439 2.025981 CCTGCATGCATAGCCCCTTATA 60.026 50.000 22.97 0.00 0.00 0.98
435 440 1.272313 CCTGCATGCATAGCCCCTTAT 60.272 52.381 22.97 0.00 0.00 1.73
436 441 0.111061 CCTGCATGCATAGCCCCTTA 59.889 55.000 22.97 0.00 0.00 2.69
437 442 1.152610 CCTGCATGCATAGCCCCTT 60.153 57.895 22.97 0.00 0.00 3.95
438 443 1.648302 TTCCTGCATGCATAGCCCCT 61.648 55.000 22.97 0.00 0.00 4.79
439 444 1.152694 TTCCTGCATGCATAGCCCC 60.153 57.895 22.97 0.00 0.00 5.80
440 445 1.177256 CCTTCCTGCATGCATAGCCC 61.177 60.000 22.97 0.00 0.00 5.19
441 446 0.179009 TCCTTCCTGCATGCATAGCC 60.179 55.000 22.97 2.30 0.00 3.93
442 447 1.236628 CTCCTTCCTGCATGCATAGC 58.763 55.000 22.97 6.52 0.00 2.97
443 448 1.419012 TCCTCCTTCCTGCATGCATAG 59.581 52.381 22.97 17.66 0.00 2.23
444 449 1.510492 TCCTCCTTCCTGCATGCATA 58.490 50.000 22.97 9.99 0.00 3.14
445 450 0.627451 TTCCTCCTTCCTGCATGCAT 59.373 50.000 22.97 0.00 0.00 3.96
446 451 0.034767 CTTCCTCCTTCCTGCATGCA 60.035 55.000 21.29 21.29 0.00 3.96
447 452 1.382692 GCTTCCTCCTTCCTGCATGC 61.383 60.000 11.82 11.82 0.00 4.06
448 453 0.255318 AGCTTCCTCCTTCCTGCATG 59.745 55.000 0.00 0.00 0.00 4.06
449 454 0.255318 CAGCTTCCTCCTTCCTGCAT 59.745 55.000 0.00 0.00 0.00 3.96
450 455 0.837691 TCAGCTTCCTCCTTCCTGCA 60.838 55.000 0.00 0.00 0.00 4.41
451 456 0.326264 TTCAGCTTCCTCCTTCCTGC 59.674 55.000 0.00 0.00 0.00 4.85
452 457 1.678425 GCTTCAGCTTCCTCCTTCCTG 60.678 57.143 0.00 0.00 38.21 3.86
453 458 0.617935 GCTTCAGCTTCCTCCTTCCT 59.382 55.000 0.00 0.00 38.21 3.36
454 459 0.742635 CGCTTCAGCTTCCTCCTTCC 60.743 60.000 0.00 0.00 39.32 3.46
455 460 0.247736 TCGCTTCAGCTTCCTCCTTC 59.752 55.000 0.00 0.00 39.32 3.46
456 461 0.687354 TTCGCTTCAGCTTCCTCCTT 59.313 50.000 0.00 0.00 39.32 3.36
457 462 0.036858 GTTCGCTTCAGCTTCCTCCT 60.037 55.000 0.00 0.00 39.32 3.69
458 463 0.320771 TGTTCGCTTCAGCTTCCTCC 60.321 55.000 0.00 0.00 39.32 4.30
459 464 1.663135 GATGTTCGCTTCAGCTTCCTC 59.337 52.381 0.00 0.00 39.32 3.71
460 465 1.677217 GGATGTTCGCTTCAGCTTCCT 60.677 52.381 0.00 0.00 39.32 3.36
461 466 0.729690 GGATGTTCGCTTCAGCTTCC 59.270 55.000 0.00 0.00 39.32 3.46
462 467 0.371645 CGGATGTTCGCTTCAGCTTC 59.628 55.000 0.00 0.00 39.32 3.86
463 468 2.460330 CGGATGTTCGCTTCAGCTT 58.540 52.632 0.00 0.00 39.32 3.74
464 469 4.192000 CGGATGTTCGCTTCAGCT 57.808 55.556 0.00 0.00 39.32 4.24
472 477 1.752501 GATCGTGTGGCGGATGTTCG 61.753 60.000 0.00 0.00 41.72 3.95
473 478 1.752501 CGATCGTGTGGCGGATGTTC 61.753 60.000 7.03 0.00 41.72 3.18
474 479 1.809619 CGATCGTGTGGCGGATGTT 60.810 57.895 7.03 0.00 41.72 2.71
475 480 2.202743 CGATCGTGTGGCGGATGT 60.203 61.111 7.03 0.00 41.72 3.06
476 481 2.104132 TCGATCGTGTGGCGGATG 59.896 61.111 15.94 0.00 41.72 3.51
477 482 1.945354 AAGTCGATCGTGTGGCGGAT 61.945 55.000 15.94 0.00 41.72 4.18
478 483 2.149803 AAAGTCGATCGTGTGGCGGA 62.150 55.000 15.94 0.00 41.72 5.54
479 484 0.457166 TAAAGTCGATCGTGTGGCGG 60.457 55.000 15.94 0.00 41.72 6.13
480 485 0.914551 CTAAAGTCGATCGTGTGGCG 59.085 55.000 15.94 0.00 43.01 5.69
481 486 0.645868 GCTAAAGTCGATCGTGTGGC 59.354 55.000 15.94 8.59 0.00 5.01
482 487 1.135083 AGGCTAAAGTCGATCGTGTGG 60.135 52.381 15.94 2.39 0.00 4.17
483 488 2.279582 AGGCTAAAGTCGATCGTGTG 57.720 50.000 15.94 2.40 0.00 3.82
484 489 4.499357 GGATAAGGCTAAAGTCGATCGTGT 60.499 45.833 15.94 0.05 0.00 4.49
485 490 3.982058 GGATAAGGCTAAAGTCGATCGTG 59.018 47.826 15.94 1.37 0.00 4.35
486 491 3.890147 AGGATAAGGCTAAAGTCGATCGT 59.110 43.478 15.94 0.00 0.00 3.73
487 492 4.477780 GAGGATAAGGCTAAAGTCGATCG 58.522 47.826 9.36 9.36 0.00 3.69
488 493 4.477780 CGAGGATAAGGCTAAAGTCGATC 58.522 47.826 0.00 0.00 0.00 3.69
489 494 3.256136 CCGAGGATAAGGCTAAAGTCGAT 59.744 47.826 7.51 0.00 0.00 3.59
490 495 2.621998 CCGAGGATAAGGCTAAAGTCGA 59.378 50.000 7.51 0.00 0.00 4.20
491 496 3.014604 CCGAGGATAAGGCTAAAGTCG 57.985 52.381 0.00 0.00 0.00 4.18
500 505 1.694150 TCCATCAAGCCGAGGATAAGG 59.306 52.381 0.00 0.00 0.00 2.69
501 506 3.692257 ATCCATCAAGCCGAGGATAAG 57.308 47.619 0.00 0.00 39.03 1.73
502 507 5.491070 CATAATCCATCAAGCCGAGGATAA 58.509 41.667 0.00 0.00 39.86 1.75
503 508 4.080919 CCATAATCCATCAAGCCGAGGATA 60.081 45.833 0.00 0.00 39.86 2.59
504 509 3.307975 CCATAATCCATCAAGCCGAGGAT 60.308 47.826 0.00 0.00 42.46 3.24
505 510 2.038952 CCATAATCCATCAAGCCGAGGA 59.961 50.000 0.00 0.00 34.12 3.71
506 511 2.038952 TCCATAATCCATCAAGCCGAGG 59.961 50.000 0.00 0.00 0.00 4.63
507 512 3.407424 TCCATAATCCATCAAGCCGAG 57.593 47.619 0.00 0.00 0.00 4.63
508 513 3.855255 TTCCATAATCCATCAAGCCGA 57.145 42.857 0.00 0.00 0.00 5.54
509 514 4.082571 GGATTTCCATAATCCATCAAGCCG 60.083 45.833 10.81 0.00 44.33 5.52
510 515 5.397142 GGATTTCCATAATCCATCAAGCC 57.603 43.478 10.81 0.00 44.33 4.35
518 523 6.218746 GTGATTTGCTGGATTTCCATAATCC 58.781 40.000 17.54 9.13 46.46 3.01
519 524 5.916883 CGTGATTTGCTGGATTTCCATAATC 59.083 40.000 15.41 15.41 46.46 1.75
520 525 5.737063 GCGTGATTTGCTGGATTTCCATAAT 60.737 40.000 0.00 1.32 46.46 1.28
521 526 4.439974 GCGTGATTTGCTGGATTTCCATAA 60.440 41.667 0.00 0.00 46.46 1.90
522 527 3.066621 GCGTGATTTGCTGGATTTCCATA 59.933 43.478 0.00 0.00 46.46 2.74
523 528 2.159198 GCGTGATTTGCTGGATTTCCAT 60.159 45.455 0.00 0.00 46.46 3.41
524 529 1.202114 GCGTGATTTGCTGGATTTCCA 59.798 47.619 0.00 0.00 45.30 3.53
525 530 1.202114 TGCGTGATTTGCTGGATTTCC 59.798 47.619 0.00 0.00 0.00 3.13
526 531 2.095059 AGTGCGTGATTTGCTGGATTTC 60.095 45.455 0.00 0.00 0.00 2.17
527 532 1.888512 AGTGCGTGATTTGCTGGATTT 59.111 42.857 0.00 0.00 0.00 2.17
528 533 1.200716 CAGTGCGTGATTTGCTGGATT 59.799 47.619 0.00 0.00 0.00 3.01
529 534 0.806868 CAGTGCGTGATTTGCTGGAT 59.193 50.000 0.00 0.00 0.00 3.41
530 535 0.250252 TCAGTGCGTGATTTGCTGGA 60.250 50.000 0.00 0.00 0.00 3.86
531 536 0.806868 ATCAGTGCGTGATTTGCTGG 59.193 50.000 0.00 0.00 44.05 4.85
532 537 1.465777 TGATCAGTGCGTGATTTGCTG 59.534 47.619 3.08 0.00 46.64 4.41
533 538 1.812235 TGATCAGTGCGTGATTTGCT 58.188 45.000 3.08 0.00 46.64 3.91
534 539 2.617250 TTGATCAGTGCGTGATTTGC 57.383 45.000 0.00 0.00 46.64 3.68
535 540 3.916172 CCTTTTGATCAGTGCGTGATTTG 59.084 43.478 0.00 0.00 46.64 2.32
536 541 3.569701 ACCTTTTGATCAGTGCGTGATTT 59.430 39.130 0.00 0.00 46.64 2.17
537 542 3.058016 CACCTTTTGATCAGTGCGTGATT 60.058 43.478 8.56 0.00 46.64 2.57
539 544 1.872952 CACCTTTTGATCAGTGCGTGA 59.127 47.619 8.56 0.00 40.38 4.35
540 545 1.872952 TCACCTTTTGATCAGTGCGTG 59.127 47.619 7.72 7.94 0.00 5.34
541 546 2.254546 TCACCTTTTGATCAGTGCGT 57.745 45.000 7.72 0.00 0.00 5.24
542 547 3.837213 AATCACCTTTTGATCAGTGCG 57.163 42.857 7.72 0.00 44.86 5.34
543 548 4.919754 GTCAAATCACCTTTTGATCAGTGC 59.080 41.667 7.72 0.00 44.86 4.40
544 549 5.149273 CGTCAAATCACCTTTTGATCAGTG 58.851 41.667 6.50 6.50 44.86 3.66
545 550 4.216257 CCGTCAAATCACCTTTTGATCAGT 59.784 41.667 0.00 0.00 44.86 3.41
546 551 4.379813 CCCGTCAAATCACCTTTTGATCAG 60.380 45.833 0.00 0.00 44.86 2.90
547 552 3.505680 CCCGTCAAATCACCTTTTGATCA 59.494 43.478 0.00 0.00 44.86 2.92
548 553 3.506067 ACCCGTCAAATCACCTTTTGATC 59.494 43.478 3.25 0.00 44.86 2.92
550 555 2.938838 ACCCGTCAAATCACCTTTTGA 58.061 42.857 0.00 0.00 41.92 2.69
551 556 4.069304 TCTACCCGTCAAATCACCTTTTG 58.931 43.478 0.00 0.00 37.83 2.44
552 557 4.070009 GTCTACCCGTCAAATCACCTTTT 58.930 43.478 0.00 0.00 0.00 2.27
553 558 3.326880 AGTCTACCCGTCAAATCACCTTT 59.673 43.478 0.00 0.00 0.00 3.11
554 559 2.904434 AGTCTACCCGTCAAATCACCTT 59.096 45.455 0.00 0.00 0.00 3.50
555 560 2.537143 AGTCTACCCGTCAAATCACCT 58.463 47.619 0.00 0.00 0.00 4.00
556 561 3.329929 AAGTCTACCCGTCAAATCACC 57.670 47.619 0.00 0.00 0.00 4.02
557 562 4.179298 GGTAAGTCTACCCGTCAAATCAC 58.821 47.826 0.00 0.00 41.77 3.06
558 563 4.460948 GGTAAGTCTACCCGTCAAATCA 57.539 45.455 0.00 0.00 41.77 2.57
569 574 1.008084 ACCCCCTCCAGGTAAGTCTAC 59.992 57.143 0.00 0.00 35.24 2.59
570 575 1.007963 CACCCCCTCCAGGTAAGTCTA 59.992 57.143 0.00 0.00 35.24 2.59
571 576 0.252742 CACCCCCTCCAGGTAAGTCT 60.253 60.000 0.00 0.00 35.24 3.24
572 577 1.272554 CCACCCCCTCCAGGTAAGTC 61.273 65.000 0.00 0.00 35.24 3.01
573 578 1.229853 CCACCCCCTCCAGGTAAGT 60.230 63.158 0.00 0.00 35.24 2.24
574 579 0.327576 ATCCACCCCCTCCAGGTAAG 60.328 60.000 0.00 0.00 35.24 2.34
575 580 0.327191 GATCCACCCCCTCCAGGTAA 60.327 60.000 0.00 0.00 35.24 2.85
576 581 1.236026 AGATCCACCCCCTCCAGGTA 61.236 60.000 0.00 0.00 35.24 3.08
577 582 2.042930 GATCCACCCCCTCCAGGT 59.957 66.667 0.00 0.00 38.48 4.00
578 583 2.074948 CAGATCCACCCCCTCCAGG 61.075 68.421 0.00 0.00 0.00 4.45
579 584 1.307343 ACAGATCCACCCCCTCCAG 60.307 63.158 0.00 0.00 0.00 3.86
580 585 1.306997 GACAGATCCACCCCCTCCA 60.307 63.158 0.00 0.00 0.00 3.86
581 586 1.306997 TGACAGATCCACCCCCTCC 60.307 63.158 0.00 0.00 0.00 4.30
582 587 1.908483 GTGACAGATCCACCCCCTC 59.092 63.158 0.00 0.00 0.00 4.30
583 588 1.990060 CGTGACAGATCCACCCCCT 60.990 63.158 0.00 0.00 0.00 4.79
584 589 1.987855 TCGTGACAGATCCACCCCC 60.988 63.158 0.00 0.00 0.00 5.40
585 590 1.218316 GTCGTGACAGATCCACCCC 59.782 63.158 0.00 0.00 0.00 4.95
586 591 0.108615 CAGTCGTGACAGATCCACCC 60.109 60.000 2.44 0.00 0.00 4.61
587 592 0.888619 TCAGTCGTGACAGATCCACC 59.111 55.000 2.44 0.00 0.00 4.61
588 593 1.813178 TCTCAGTCGTGACAGATCCAC 59.187 52.381 2.44 0.00 0.00 4.02
589 594 2.200373 TCTCAGTCGTGACAGATCCA 57.800 50.000 2.44 0.00 0.00 3.41
590 595 2.223688 CCATCTCAGTCGTGACAGATCC 60.224 54.545 2.44 0.00 0.00 3.36
1558 1573 0.034337 GTGGCTACACGAACCCAGAA 59.966 55.000 0.00 0.00 37.94 3.02
1629 1644 1.064017 TCCCAAGTGGACAAGCAACTT 60.064 47.619 0.00 0.00 38.61 2.66
1663 1678 4.065088 CGACCAAATTTCTCCTTCAGTGA 58.935 43.478 0.00 0.00 0.00 3.41
2048 2334 2.913578 CTGCTGCTTGTGGGGCAA 60.914 61.111 0.00 0.00 39.30 4.52
2119 2407 0.179134 CGATCTTCGCCTCGTCCTTT 60.179 55.000 0.00 0.00 31.14 3.11
2426 2714 0.823356 GAAGCTGTGGGAACTGCCAA 60.823 55.000 4.39 0.00 38.95 4.52
2629 2917 1.076485 GCCAGTCCATTCCCAGCAT 60.076 57.895 0.00 0.00 0.00 3.79
2909 3200 1.973812 GGCAACTCTGTTGGCTCCC 60.974 63.158 23.48 8.75 41.17 4.30
3498 3791 5.122519 TGATGTTGTCTTAACAGTTGCAGA 58.877 37.500 0.00 0.00 36.57 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.