Multiple sequence alignment - TraesCS3D01G045600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G045600 chr3D 100.000 2456 0 0 1 2456 17408431 17405976 0.000000e+00 4536.0
1 TraesCS3D01G045600 chr3D 85.742 1045 98 26 731 1746 17592461 17591439 0.000000e+00 1057.0
2 TraesCS3D01G045600 chr3D 85.797 1042 97 26 731 1743 17602896 17603915 0.000000e+00 1057.0
3 TraesCS3D01G045600 chr3D 83.573 974 74 41 799 1745 17414126 17413212 0.000000e+00 833.0
4 TraesCS3D01G045600 chr3D 83.615 946 81 31 822 1744 17556291 17557185 0.000000e+00 821.0
5 TraesCS3D01G045600 chr3D 83.615 946 81 31 822 1744 17581504 17580610 0.000000e+00 821.0
6 TraesCS3D01G045600 chr3D 87.708 480 44 9 1 469 17417772 17417297 1.660000e-151 545.0
7 TraesCS3D01G045600 chr3D 88.346 266 28 3 2192 2455 164284700 164284436 1.420000e-82 316.0
8 TraesCS3D01G045600 chr3D 84.806 283 27 9 504 783 17414373 17414104 1.120000e-68 270.0
9 TraesCS3D01G045600 chr3D 93.125 160 5 2 630 783 17395662 17395503 1.900000e-56 230.0
10 TraesCS3D01G045600 chr3D 88.506 87 8 2 799 883 17395525 17395439 1.200000e-18 104.0
11 TraesCS3D01G045600 chr3A 88.086 982 72 24 788 1746 19314617 19313658 0.000000e+00 1123.0
12 TraesCS3D01G045600 chr3A 88.722 798 47 20 954 1746 19328874 19328115 0.000000e+00 935.0
13 TraesCS3D01G045600 chr3A 89.837 246 10 8 1827 2058 19467773 19468017 3.970000e-78 302.0
14 TraesCS3D01G045600 chr3B 86.761 914 69 15 818 1708 25122375 25121491 0.000000e+00 970.0
15 TraesCS3D01G045600 chr3B 84.806 283 13 13 1827 2096 25056272 25056007 8.710000e-65 257.0
16 TraesCS3D01G045600 chr3B 85.283 265 21 10 1827 2074 25121438 25121175 8.710000e-65 257.0
17 TraesCS3D01G045600 chrUn 86.902 794 87 13 941 1728 291906394 291905612 0.000000e+00 874.0
18 TraesCS3D01G045600 chrUn 83.923 933 107 24 619 1522 37339163 37338245 0.000000e+00 852.0
19 TraesCS3D01G045600 chrUn 83.923 933 107 24 619 1522 237380295 237379377 0.000000e+00 852.0
20 TraesCS3D01G045600 chrUn 88.128 716 50 17 838 1522 38635578 38634867 0.000000e+00 819.0
21 TraesCS3D01G045600 chrUn 95.833 72 2 1 2025 2096 291907871 291907801 5.550000e-22 115.0
22 TraesCS3D01G045600 chr6B 88.476 269 28 3 2188 2454 21141666 21141933 3.050000e-84 322.0
23 TraesCS3D01G045600 chr6D 86.617 269 32 4 2189 2454 11269415 11269682 6.640000e-76 294.0
24 TraesCS3D01G045600 chr6D 85.556 270 36 3 2188 2455 11269919 11270187 1.860000e-71 279.0
25 TraesCS3D01G045600 chr2A 86.245 269 34 3 2188 2454 40439299 40439566 3.090000e-74 289.0
26 TraesCS3D01G045600 chr7D 86.047 258 32 4 2188 2443 587289856 587289601 8.650000e-70 274.0
27 TraesCS3D01G045600 chr7D 93.023 43 3 0 199 241 185769331 185769289 2.040000e-06 63.9
28 TraesCS3D01G045600 chr5A 85.338 266 36 3 2192 2455 200729 200465 3.110000e-69 272.0
29 TraesCS3D01G045600 chr5A 84.328 268 39 3 2188 2453 632462833 632463099 2.420000e-65 259.0
30 TraesCS3D01G045600 chr5A 79.839 124 18 6 196 316 410446671 410446790 1.570000e-12 84.2
31 TraesCS3D01G045600 chr1D 84.559 272 35 6 2188 2455 381964313 381964045 1.870000e-66 263.0
32 TraesCS3D01G045600 chr4D 82.857 105 17 1 138 241 415287432 415287536 2.600000e-15 93.5
33 TraesCS3D01G045600 chr6A 87.500 64 8 0 167 230 425284418 425284481 9.420000e-10 75.0
34 TraesCS3D01G045600 chr5B 74.444 180 38 8 129 303 313434192 313434016 1.220000e-08 71.3
35 TraesCS3D01G045600 chr5B 74.269 171 36 8 129 294 313433172 313433339 5.670000e-07 65.8
36 TraesCS3D01G045600 chr2B 95.122 41 2 0 201 241 310178755 310178795 5.670000e-07 65.8
37 TraesCS3D01G045600 chr2B 91.304 46 4 0 196 241 675379133 675379178 2.040000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G045600 chr3D 17405976 17408431 2455 True 4536.000000 4536 100.000000 1 2456 1 chr3D.!!$R1 2455
1 TraesCS3D01G045600 chr3D 17591439 17592461 1022 True 1057.000000 1057 85.742000 731 1746 1 chr3D.!!$R3 1015
2 TraesCS3D01G045600 chr3D 17602896 17603915 1019 False 1057.000000 1057 85.797000 731 1743 1 chr3D.!!$F2 1012
3 TraesCS3D01G045600 chr3D 17556291 17557185 894 False 821.000000 821 83.615000 822 1744 1 chr3D.!!$F1 922
4 TraesCS3D01G045600 chr3D 17580610 17581504 894 True 821.000000 821 83.615000 822 1744 1 chr3D.!!$R2 922
5 TraesCS3D01G045600 chr3D 17413212 17417772 4560 True 549.333333 833 85.362333 1 1745 3 chr3D.!!$R6 1744
6 TraesCS3D01G045600 chr3A 19313658 19314617 959 True 1123.000000 1123 88.086000 788 1746 1 chr3A.!!$R1 958
7 TraesCS3D01G045600 chr3A 19328115 19328874 759 True 935.000000 935 88.722000 954 1746 1 chr3A.!!$R2 792
8 TraesCS3D01G045600 chr3B 25121175 25122375 1200 True 613.500000 970 86.022000 818 2074 2 chr3B.!!$R2 1256
9 TraesCS3D01G045600 chrUn 37338245 37339163 918 True 852.000000 852 83.923000 619 1522 1 chrUn.!!$R1 903
10 TraesCS3D01G045600 chrUn 237379377 237380295 918 True 852.000000 852 83.923000 619 1522 1 chrUn.!!$R3 903
11 TraesCS3D01G045600 chrUn 38634867 38635578 711 True 819.000000 819 88.128000 838 1522 1 chrUn.!!$R2 684
12 TraesCS3D01G045600 chrUn 291905612 291907871 2259 True 494.500000 874 91.367500 941 2096 2 chrUn.!!$R4 1155
13 TraesCS3D01G045600 chr6D 11269415 11270187 772 False 286.500000 294 86.086500 2188 2455 2 chr6D.!!$F1 267

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
998 3964 0.041312 CAAACCGAAGCAACACCGAG 60.041 55.0 0.0 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2364 5364 0.101579 TCTCGAATATTGCACGCGGA 59.898 50.0 12.47 0.0 0.0 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.721718 GCGATAAGTGGTGACTGCAC 59.278 55.000 0.00 0.00 44.39 4.57
36 37 0.878523 TAAGTGGTGACTGCACGTGC 60.879 55.000 33.11 33.11 46.09 5.34
66 67 1.268539 CGCAACCAGACAGTTTTGGTC 60.269 52.381 10.28 0.00 46.67 4.02
68 69 2.223572 GCAACCAGACAGTTTTGGTCAG 60.224 50.000 10.28 8.07 46.67 3.51
71 72 4.170468 ACCAGACAGTTTTGGTCAGAAT 57.830 40.909 5.13 0.00 44.16 2.40
72 73 4.536765 ACCAGACAGTTTTGGTCAGAATT 58.463 39.130 5.13 0.00 44.16 2.17
74 75 5.422012 ACCAGACAGTTTTGGTCAGAATTTT 59.578 36.000 5.13 0.00 44.16 1.82
93 94 2.093306 TTTGTGACAGTATGGAGGCG 57.907 50.000 0.00 0.00 43.62 5.52
117 118 3.119280 CGGTGGGTTTGTGTTCTTCTTTT 60.119 43.478 0.00 0.00 0.00 2.27
121 122 7.368059 GGTGGGTTTGTGTTCTTCTTTTATAG 58.632 38.462 0.00 0.00 0.00 1.31
164 168 4.265904 TCTGCTGAATCTACGTCCAAAA 57.734 40.909 0.00 0.00 0.00 2.44
181 185 6.509358 CGTCCAAAACATGAACCATTTTCAAC 60.509 38.462 0.00 0.00 31.55 3.18
193 197 9.474920 TGAACCATTTTCAACATTGTATTTCTC 57.525 29.630 0.00 0.00 0.00 2.87
208 212 5.800438 TGTATTTCTCACGTCAAGATCTTCG 59.200 40.000 4.57 9.94 0.00 3.79
238 242 7.706281 AGATCTCATGTTGATATGTTTCGAC 57.294 36.000 0.00 0.00 0.00 4.20
295 299 7.937394 ACTAGTAGTAACTTGTGCTTCCAAATT 59.063 33.333 0.00 0.00 39.72 1.82
306 310 6.734137 TGTGCTTCCAAATTGTACTAAACTG 58.266 36.000 0.00 0.00 0.00 3.16
391 401 4.908687 ACACGCGCTTGCCAGACA 62.909 61.111 14.54 0.00 34.11 3.41
400 410 1.204704 GCTTGCCAGACATAAAACCCC 59.795 52.381 0.00 0.00 0.00 4.95
405 415 3.711704 TGCCAGACATAAAACCCCAAAAA 59.288 39.130 0.00 0.00 0.00 1.94
444 454 9.874205 AAAAATGAGAACAGTGAAAAGAATTCA 57.126 25.926 8.44 0.00 0.00 2.57
491 2490 5.674933 AAAACGCAAACCAAAAACAGAAA 57.325 30.435 0.00 0.00 0.00 2.52
492 2491 5.674933 AAACGCAAACCAAAAACAGAAAA 57.325 30.435 0.00 0.00 0.00 2.29
493 2492 4.919677 ACGCAAACCAAAAACAGAAAAG 57.080 36.364 0.00 0.00 0.00 2.27
494 2493 4.311606 ACGCAAACCAAAAACAGAAAAGT 58.688 34.783 0.00 0.00 0.00 2.66
495 2494 4.752604 ACGCAAACCAAAAACAGAAAAGTT 59.247 33.333 0.00 0.00 0.00 2.66
496 2495 5.237561 ACGCAAACCAAAAACAGAAAAGTTT 59.762 32.000 0.00 0.00 43.13 2.66
509 3406 7.210718 ACAGAAAAGTTTTATAGGAAACCCG 57.789 36.000 0.00 0.00 39.71 5.28
510 3407 6.999871 ACAGAAAAGTTTTATAGGAAACCCGA 59.000 34.615 0.00 0.00 39.71 5.14
512 3409 8.021396 CAGAAAAGTTTTATAGGAAACCCGAAG 58.979 37.037 0.00 0.00 39.71 3.79
514 3411 8.467963 AAAAGTTTTATAGGAAACCCGAAGAA 57.532 30.769 0.00 0.00 39.71 2.52
520 3417 3.021177 AGGAAACCCGAAGAAAAACCA 57.979 42.857 0.00 0.00 0.00 3.67
530 3427 5.634859 CCCGAAGAAAAACCATTTCAATGAG 59.365 40.000 0.81 0.00 38.70 2.90
546 3446 1.281656 GAGAAAACGCCCAACACGG 59.718 57.895 0.00 0.00 34.00 4.94
547 3447 1.441732 GAGAAAACGCCCAACACGGT 61.442 55.000 0.00 0.00 34.00 4.83
550 3450 1.313812 AAAACGCCCAACACGGTTCA 61.314 50.000 0.00 0.00 40.07 3.18
564 3464 1.774639 GGTTCACGTAGCGACTTTGA 58.225 50.000 0.00 0.00 0.00 2.69
589 3489 0.669318 TCCACGCTAGAAAAGTGCCG 60.669 55.000 0.00 0.00 39.48 5.69
605 3505 4.503314 CGTCGGCGGAGGTTACCC 62.503 72.222 7.21 0.00 0.00 3.69
613 3525 2.625737 GCGGAGGTTACCCTTAGTTTC 58.374 52.381 0.00 0.00 42.86 2.78
629 3541 3.756117 AGTTTCTCTGGTTTCCATGTCC 58.244 45.455 0.00 0.00 30.82 4.02
639 3551 4.467795 TGGTTTCCATGTCCTCTTCTAGAG 59.532 45.833 0.00 0.00 41.96 2.43
641 3553 5.394773 GGTTTCCATGTCCTCTTCTAGAGAC 60.395 48.000 5.30 3.49 45.07 3.36
648 3560 1.448922 CTCTTCTAGAGACGGCCCCG 61.449 65.000 4.96 4.96 45.07 5.73
649 3561 3.140225 CTTCTAGAGACGGCCCCGC 62.140 68.421 6.63 0.00 44.19 6.13
650 3562 3.949885 TTCTAGAGACGGCCCCGCA 62.950 63.158 6.63 0.00 44.19 5.69
657 3569 4.966787 ACGGCCCCGCAACACATT 62.967 61.111 6.63 0.00 44.19 2.71
658 3570 4.114997 CGGCCCCGCAACACATTC 62.115 66.667 0.00 0.00 0.00 2.67
659 3571 2.676471 GGCCCCGCAACACATTCT 60.676 61.111 0.00 0.00 0.00 2.40
662 3574 0.392461 GCCCCGCAACACATTCTAGA 60.392 55.000 0.00 0.00 0.00 2.43
812 3724 2.335712 GCCTGGCTGGAAACCGAAG 61.336 63.158 15.36 0.00 38.35 3.79
831 3743 0.669625 GGAGAACCAAACTCCCGTCG 60.670 60.000 0.00 0.00 45.64 5.12
834 3746 1.346722 AGAACCAAACTCCCGTCGATT 59.653 47.619 0.00 0.00 0.00 3.34
835 3747 2.148768 GAACCAAACTCCCGTCGATTT 58.851 47.619 0.00 0.00 0.00 2.17
885 3797 1.530293 AGCCGACGACGCTATAAGTAG 59.470 52.381 0.64 0.00 38.29 2.57
899 3811 1.268283 AAGTAGCTGGCCTCAGTCCC 61.268 60.000 3.32 0.00 42.78 4.46
900 3812 1.990060 GTAGCTGGCCTCAGTCCCA 60.990 63.158 3.32 0.00 42.78 4.37
901 3813 1.003442 TAGCTGGCCTCAGTCCCAT 59.997 57.895 3.32 0.00 42.78 4.00
902 3814 1.050988 TAGCTGGCCTCAGTCCCATC 61.051 60.000 3.32 0.00 42.78 3.51
903 3815 2.503061 CTGGCCTCAGTCCCATCG 59.497 66.667 3.32 0.00 36.30 3.84
904 3816 3.746949 CTGGCCTCAGTCCCATCGC 62.747 68.421 3.32 0.00 36.30 4.58
905 3817 4.554036 GGCCTCAGTCCCATCGCC 62.554 72.222 0.00 0.00 0.00 5.54
906 3818 4.554036 GCCTCAGTCCCATCGCCC 62.554 72.222 0.00 0.00 0.00 6.13
907 3819 4.227134 CCTCAGTCCCATCGCCCG 62.227 72.222 0.00 0.00 0.00 6.13
916 3828 4.873810 CATCGCCCGCCATCCCAA 62.874 66.667 0.00 0.00 0.00 4.12
917 3829 4.122149 ATCGCCCGCCATCCCAAA 62.122 61.111 0.00 0.00 0.00 3.28
920 3832 3.140814 GCCCGCCATCCCAAACTC 61.141 66.667 0.00 0.00 0.00 3.01
921 3833 2.354729 CCCGCCATCCCAAACTCA 59.645 61.111 0.00 0.00 0.00 3.41
922 3834 1.304052 CCCGCCATCCCAAACTCAA 60.304 57.895 0.00 0.00 0.00 3.02
924 3836 1.508088 CGCCATCCCAAACTCAAGC 59.492 57.895 0.00 0.00 0.00 4.01
925 3837 1.893062 GCCATCCCAAACTCAAGCC 59.107 57.895 0.00 0.00 0.00 4.35
926 3838 0.899717 GCCATCCCAAACTCAAGCCA 60.900 55.000 0.00 0.00 0.00 4.75
927 3839 1.180029 CCATCCCAAACTCAAGCCAG 58.820 55.000 0.00 0.00 0.00 4.85
928 3840 0.529378 CATCCCAAACTCAAGCCAGC 59.471 55.000 0.00 0.00 0.00 4.85
929 3841 0.962356 ATCCCAAACTCAAGCCAGCG 60.962 55.000 0.00 0.00 0.00 5.18
930 3842 1.898574 CCCAAACTCAAGCCAGCGT 60.899 57.895 0.00 0.00 0.00 5.07
932 3844 1.165907 CCAAACTCAAGCCAGCGTCA 61.166 55.000 0.00 0.00 0.00 4.35
934 3846 0.947244 AAACTCAAGCCAGCGTCAAG 59.053 50.000 0.00 0.00 0.00 3.02
967 3926 5.210715 ACGTACGATCCGATACAGAATTTC 58.789 41.667 24.41 0.00 0.00 2.17
985 3946 2.125269 CCCCCGAGCTACAAACCG 60.125 66.667 0.00 0.00 0.00 4.44
998 3964 0.041312 CAAACCGAAGCAACACCGAG 60.041 55.000 0.00 0.00 0.00 4.63
1038 4004 1.938861 CAACGTGTTCGACCCCTTG 59.061 57.895 0.00 0.00 40.62 3.61
1041 4007 3.047877 GTGTTCGACCCCTTGGCG 61.048 66.667 0.00 0.00 33.59 5.69
1140 4106 4.875713 GCCAACGCCCGGATGGAT 62.876 66.667 16.58 0.00 36.27 3.41
1359 4325 2.047179 GACGCCAAGGTGGAGGAC 60.047 66.667 4.49 0.00 41.96 3.85
1508 4474 0.244721 GGAGCCAGTTTGGTTGATGC 59.755 55.000 0.00 0.00 40.46 3.91
1562 4529 3.119495 ACAGTTGTGTCTTTGTTCTTGCC 60.119 43.478 0.00 0.00 26.76 4.52
1590 4564 0.249238 CTGGCGAGGCATCTCTGTAC 60.249 60.000 0.00 0.00 37.86 2.90
1603 4577 3.305964 TCTCTGTACTGCGTTTCTTTCG 58.694 45.455 0.00 0.00 0.00 3.46
1643 4619 4.068599 TGTGTAATCGCCAACAGATTTGA 58.931 39.130 0.00 0.00 38.96 2.69
1672 4648 7.703328 TGAATAAATGAGAAATAAGCCGTTCC 58.297 34.615 0.00 0.00 0.00 3.62
1718 4697 7.475771 TTTGCATACACAAATTTGACCTTTC 57.524 32.000 24.64 9.56 34.68 2.62
1746 4728 3.693807 TGTACTAGTTCGGATGGACAGT 58.306 45.455 0.00 0.00 0.00 3.55
1747 4729 4.084287 TGTACTAGTTCGGATGGACAGTT 58.916 43.478 0.00 0.00 0.00 3.16
1748 4730 4.525487 TGTACTAGTTCGGATGGACAGTTT 59.475 41.667 0.00 0.00 0.00 2.66
1749 4731 4.618920 ACTAGTTCGGATGGACAGTTTT 57.381 40.909 0.00 0.00 0.00 2.43
1750 4732 4.566987 ACTAGTTCGGATGGACAGTTTTC 58.433 43.478 0.00 0.00 0.00 2.29
1751 4733 3.771577 AGTTCGGATGGACAGTTTTCT 57.228 42.857 0.00 0.00 0.00 2.52
1754 4736 3.762407 TCGGATGGACAGTTTTCTCAA 57.238 42.857 0.00 0.00 0.00 3.02
1755 4737 3.664107 TCGGATGGACAGTTTTCTCAAG 58.336 45.455 0.00 0.00 0.00 3.02
1756 4738 3.071023 TCGGATGGACAGTTTTCTCAAGT 59.929 43.478 0.00 0.00 0.00 3.16
1757 4739 4.282449 TCGGATGGACAGTTTTCTCAAGTA 59.718 41.667 0.00 0.00 0.00 2.24
1758 4740 4.627467 CGGATGGACAGTTTTCTCAAGTAG 59.373 45.833 0.00 0.00 0.00 2.57
1759 4741 4.393371 GGATGGACAGTTTTCTCAAGTAGC 59.607 45.833 0.00 0.00 0.00 3.58
1760 4742 4.689612 TGGACAGTTTTCTCAAGTAGCT 57.310 40.909 0.00 0.00 0.00 3.32
1761 4743 4.380531 TGGACAGTTTTCTCAAGTAGCTG 58.619 43.478 0.00 0.00 0.00 4.24
1762 4744 4.100963 TGGACAGTTTTCTCAAGTAGCTGA 59.899 41.667 0.00 0.00 0.00 4.26
1763 4745 5.057149 GGACAGTTTTCTCAAGTAGCTGAA 58.943 41.667 0.00 0.00 0.00 3.02
1764 4746 5.527582 GGACAGTTTTCTCAAGTAGCTGAAA 59.472 40.000 0.00 0.00 0.00 2.69
1765 4747 6.038271 GGACAGTTTTCTCAAGTAGCTGAAAA 59.962 38.462 0.00 0.00 36.47 2.29
1766 4748 7.020914 ACAGTTTTCTCAAGTAGCTGAAAAG 57.979 36.000 7.43 1.72 38.52 2.27
1767 4749 6.823689 ACAGTTTTCTCAAGTAGCTGAAAAGA 59.176 34.615 7.43 0.00 38.52 2.52
1768 4750 7.500559 ACAGTTTTCTCAAGTAGCTGAAAAGAT 59.499 33.333 7.43 0.00 38.52 2.40
1769 4751 8.348507 CAGTTTTCTCAAGTAGCTGAAAAGATT 58.651 33.333 7.43 0.00 38.52 2.40
1770 4752 8.563732 AGTTTTCTCAAGTAGCTGAAAAGATTC 58.436 33.333 7.43 0.00 38.52 2.52
1771 4753 8.345565 GTTTTCTCAAGTAGCTGAAAAGATTCA 58.654 33.333 7.43 0.00 43.18 2.57
1772 4754 8.627208 TTTCTCAAGTAGCTGAAAAGATTCAT 57.373 30.769 0.00 0.00 44.29 2.57
1773 4755 8.627208 TTCTCAAGTAGCTGAAAAGATTCATT 57.373 30.769 0.00 0.00 44.29 2.57
1774 4756 8.037382 TCTCAAGTAGCTGAAAAGATTCATTG 57.963 34.615 0.00 0.00 44.29 2.82
1775 4757 7.663081 TCTCAAGTAGCTGAAAAGATTCATTGT 59.337 33.333 0.00 0.00 44.29 2.71
1776 4758 8.846943 TCAAGTAGCTGAAAAGATTCATTGTA 57.153 30.769 0.00 0.00 44.29 2.41
1777 4759 8.721478 TCAAGTAGCTGAAAAGATTCATTGTAC 58.279 33.333 0.00 0.00 44.29 2.90
1778 4760 8.506437 CAAGTAGCTGAAAAGATTCATTGTACA 58.494 33.333 0.00 0.00 44.29 2.90
1779 4761 8.034058 AGTAGCTGAAAAGATTCATTGTACAC 57.966 34.615 0.00 0.00 44.29 2.90
1780 4762 6.882610 AGCTGAAAAGATTCATTGTACACA 57.117 33.333 0.00 0.00 44.29 3.72
1781 4763 7.275888 AGCTGAAAAGATTCATTGTACACAA 57.724 32.000 0.00 0.00 44.29 3.33
1782 4764 7.365741 AGCTGAAAAGATTCATTGTACACAAG 58.634 34.615 0.00 0.00 44.29 3.16
1783 4765 6.583806 GCTGAAAAGATTCATTGTACACAAGG 59.416 38.462 0.00 0.44 44.29 3.61
1784 4766 7.522073 GCTGAAAAGATTCATTGTACACAAGGA 60.522 37.037 5.41 5.41 44.29 3.36
1793 4775 7.202016 TCATTGTACACAAGGAAAGATTCAC 57.798 36.000 6.96 0.00 42.66 3.18
1794 4776 6.998074 TCATTGTACACAAGGAAAGATTCACT 59.002 34.615 6.96 0.00 42.66 3.41
1795 4777 6.618287 TTGTACACAAGGAAAGATTCACTG 57.382 37.500 0.00 0.00 0.00 3.66
1796 4778 5.924356 TGTACACAAGGAAAGATTCACTGA 58.076 37.500 0.00 0.00 0.00 3.41
1797 4779 6.353323 TGTACACAAGGAAAGATTCACTGAA 58.647 36.000 0.00 0.00 0.00 3.02
1798 4780 6.826231 TGTACACAAGGAAAGATTCACTGAAA 59.174 34.615 0.00 0.00 0.00 2.69
1799 4781 6.773976 ACACAAGGAAAGATTCACTGAAAA 57.226 33.333 0.00 0.00 0.00 2.29
1800 4782 7.352079 ACACAAGGAAAGATTCACTGAAAAT 57.648 32.000 0.00 0.00 0.00 1.82
1801 4783 7.205297 ACACAAGGAAAGATTCACTGAAAATG 58.795 34.615 0.00 0.00 0.00 2.32
1802 4784 6.643770 CACAAGGAAAGATTCACTGAAAATGG 59.356 38.462 0.00 0.00 0.00 3.16
1803 4785 5.397142 AGGAAAGATTCACTGAAAATGGC 57.603 39.130 0.00 0.00 0.00 4.40
1804 4786 4.834496 AGGAAAGATTCACTGAAAATGGCA 59.166 37.500 0.00 0.00 0.00 4.92
1805 4787 5.047519 AGGAAAGATTCACTGAAAATGGCAG 60.048 40.000 0.00 0.00 39.26 4.85
1806 4788 3.863142 AGATTCACTGAAAATGGCAGC 57.137 42.857 0.00 0.00 36.86 5.25
1807 4789 2.494870 AGATTCACTGAAAATGGCAGCC 59.505 45.455 3.66 3.66 36.86 4.85
1808 4790 1.999648 TTCACTGAAAATGGCAGCCT 58.000 45.000 14.15 0.00 36.86 4.58
1809 4791 1.250328 TCACTGAAAATGGCAGCCTG 58.750 50.000 14.15 0.00 36.86 4.85
1810 4792 0.245539 CACTGAAAATGGCAGCCTGG 59.754 55.000 14.15 0.00 36.86 4.45
1811 4793 1.217244 CTGAAAATGGCAGCCTGGC 59.783 57.895 14.15 11.65 44.03 4.85
1820 4802 2.352422 CAGCCTGGCAAGCAGGTA 59.648 61.111 22.65 0.00 41.73 3.08
1821 4803 2.042831 CAGCCTGGCAAGCAGGTAC 61.043 63.158 22.65 0.00 41.73 3.34
1822 4804 2.227036 AGCCTGGCAAGCAGGTACT 61.227 57.895 22.65 0.00 41.73 2.73
1823 4805 0.909610 AGCCTGGCAAGCAGGTACTA 60.910 55.000 22.65 0.00 41.73 1.82
1824 4806 0.462759 GCCTGGCAAGCAGGTACTAG 60.463 60.000 15.17 0.00 41.73 2.57
1825 4807 0.179000 CCTGGCAAGCAGGTACTAGG 59.821 60.000 0.00 0.00 36.02 3.02
1840 4822 8.008513 CAGGTACTAGGTCTGCTTAAAGAATA 57.991 38.462 0.00 0.00 36.02 1.75
1851 4833 8.208560 GTCTGCTTAAAGAATAATCGATACACG 58.791 37.037 0.00 0.00 44.09 4.49
1885 4876 5.740569 CACATTCAGCTTTCATTAATCGTGG 59.259 40.000 0.00 0.00 0.00 4.94
1918 4909 2.785269 TCAATACCCTGAATGCCCTGAT 59.215 45.455 0.00 0.00 0.00 2.90
1929 4920 3.880047 ATGCCCTGATTGTTGATTGTG 57.120 42.857 0.00 0.00 0.00 3.33
1969 4964 7.066404 ACCTTCAGTTTTCTTCTTTCTTGAGAC 59.934 37.037 0.00 0.00 0.00 3.36
1974 4969 9.050601 CAGTTTTCTTCTTTCTTGAGACATACT 57.949 33.333 0.00 0.00 0.00 2.12
2046 5045 4.201657 ACACACCCATATCATCACACATG 58.798 43.478 0.00 0.00 0.00 3.21
2047 5046 4.201657 CACACCCATATCATCACACATGT 58.798 43.478 0.00 0.00 0.00 3.21
2074 5073 9.863845 TTAACTCAAACGTGACATATCATCTAA 57.136 29.630 0.00 0.00 37.14 2.10
2075 5074 8.948631 AACTCAAACGTGACATATCATCTAAT 57.051 30.769 0.00 0.00 37.14 1.73
2076 5075 8.357796 ACTCAAACGTGACATATCATCTAATG 57.642 34.615 0.00 0.00 37.14 1.90
2077 5076 8.197439 ACTCAAACGTGACATATCATCTAATGA 58.803 33.333 0.00 0.00 44.55 2.57
2078 5077 8.940768 TCAAACGTGACATATCATCTAATGAA 57.059 30.769 0.00 0.00 43.50 2.57
2079 5078 9.034544 TCAAACGTGACATATCATCTAATGAAG 57.965 33.333 0.00 0.00 43.50 3.02
2080 5079 8.820933 CAAACGTGACATATCATCTAATGAAGT 58.179 33.333 0.00 0.00 43.50 3.01
2081 5080 8.948631 AACGTGACATATCATCTAATGAAGTT 57.051 30.769 0.00 0.00 43.50 2.66
2082 5081 8.581057 ACGTGACATATCATCTAATGAAGTTC 57.419 34.615 0.00 0.00 43.50 3.01
2083 5082 8.197439 ACGTGACATATCATCTAATGAAGTTCA 58.803 33.333 8.27 8.27 43.50 3.18
2084 5083 9.034544 CGTGACATATCATCTAATGAAGTTCAA 57.965 33.333 10.14 0.00 43.50 2.69
2103 5102 8.232913 AGTTCAAACTTAAGACTTATTTGCCA 57.767 30.769 10.09 0.00 35.21 4.92
2104 5103 8.691797 AGTTCAAACTTAAGACTTATTTGCCAA 58.308 29.630 10.09 0.00 35.21 4.52
2105 5104 8.968242 GTTCAAACTTAAGACTTATTTGCCAAG 58.032 33.333 10.09 4.07 31.71 3.61
2106 5105 8.458573 TCAAACTTAAGACTTATTTGCCAAGA 57.541 30.769 10.09 0.00 31.71 3.02
2107 5106 8.567948 TCAAACTTAAGACTTATTTGCCAAGAG 58.432 33.333 10.09 1.49 31.71 2.85
2108 5107 6.502136 ACTTAAGACTTATTTGCCAAGAGC 57.498 37.500 10.09 0.00 44.14 4.09
2109 5108 6.241645 ACTTAAGACTTATTTGCCAAGAGCT 58.758 36.000 10.09 0.00 44.23 4.09
2110 5109 7.394816 ACTTAAGACTTATTTGCCAAGAGCTA 58.605 34.615 10.09 0.00 44.23 3.32
2111 5110 7.334671 ACTTAAGACTTATTTGCCAAGAGCTAC 59.665 37.037 10.09 0.00 44.23 3.58
2112 5111 4.184629 AGACTTATTTGCCAAGAGCTACG 58.815 43.478 0.00 0.00 44.23 3.51
2113 5112 2.678336 ACTTATTTGCCAAGAGCTACGC 59.322 45.455 0.00 0.00 44.23 4.42
2114 5113 2.691409 TATTTGCCAAGAGCTACGCT 57.309 45.000 0.00 0.00 43.88 5.07
2122 5121 3.389206 GAGCTACGCTCGGCAAAG 58.611 61.111 0.00 0.00 45.85 2.77
2123 5122 1.153823 GAGCTACGCTCGGCAAAGA 60.154 57.895 0.00 0.00 45.85 2.52
2124 5123 0.528684 GAGCTACGCTCGGCAAAGAT 60.529 55.000 0.00 0.00 45.85 2.40
2125 5124 0.108138 AGCTACGCTCGGCAAAGATT 60.108 50.000 0.00 0.00 30.62 2.40
2126 5125 1.136305 AGCTACGCTCGGCAAAGATTA 59.864 47.619 0.00 0.00 30.62 1.75
2127 5126 1.931172 GCTACGCTCGGCAAAGATTAA 59.069 47.619 0.00 0.00 0.00 1.40
2128 5127 2.033662 GCTACGCTCGGCAAAGATTAAG 60.034 50.000 0.00 0.00 0.00 1.85
2129 5128 0.727398 ACGCTCGGCAAAGATTAAGC 59.273 50.000 0.00 0.00 0.00 3.09
2130 5129 0.726827 CGCTCGGCAAAGATTAAGCA 59.273 50.000 0.00 0.00 0.00 3.91
2131 5130 1.130373 CGCTCGGCAAAGATTAAGCAA 59.870 47.619 0.00 0.00 0.00 3.91
2132 5131 2.414029 CGCTCGGCAAAGATTAAGCAAA 60.414 45.455 0.00 0.00 0.00 3.68
2133 5132 2.917343 GCTCGGCAAAGATTAAGCAAAC 59.083 45.455 0.00 0.00 0.00 2.93
2134 5133 3.366374 GCTCGGCAAAGATTAAGCAAACT 60.366 43.478 0.00 0.00 0.00 2.66
2135 5134 4.798574 CTCGGCAAAGATTAAGCAAACTT 58.201 39.130 0.00 0.00 40.07 2.66
2136 5135 5.195001 TCGGCAAAGATTAAGCAAACTTT 57.805 34.783 0.00 0.00 37.33 2.66
2137 5136 6.320494 TCGGCAAAGATTAAGCAAACTTTA 57.680 33.333 0.00 0.00 37.33 1.85
2138 5137 6.378582 TCGGCAAAGATTAAGCAAACTTTAG 58.621 36.000 0.00 0.00 37.33 1.85
2139 5138 6.016610 TCGGCAAAGATTAAGCAAACTTTAGT 60.017 34.615 0.00 0.00 37.33 2.24
2140 5139 6.305638 CGGCAAAGATTAAGCAAACTTTAGTC 59.694 38.462 0.00 0.00 37.33 2.59
2141 5140 6.586463 GGCAAAGATTAAGCAAACTTTAGTCC 59.414 38.462 0.00 0.00 37.33 3.85
2142 5141 6.586463 GCAAAGATTAAGCAAACTTTAGTCCC 59.414 38.462 0.00 0.00 37.33 4.46
2143 5142 7.657336 CAAAGATTAAGCAAACTTTAGTCCCA 58.343 34.615 0.00 0.00 37.33 4.37
2144 5143 6.819397 AGATTAAGCAAACTTTAGTCCCAC 57.181 37.500 0.00 0.00 37.33 4.61
2145 5144 5.710567 AGATTAAGCAAACTTTAGTCCCACC 59.289 40.000 0.00 0.00 37.33 4.61
2146 5145 3.595190 AAGCAAACTTTAGTCCCACCT 57.405 42.857 0.00 0.00 29.41 4.00
2147 5146 3.141767 AGCAAACTTTAGTCCCACCTC 57.858 47.619 0.00 0.00 0.00 3.85
2148 5147 1.804748 GCAAACTTTAGTCCCACCTCG 59.195 52.381 0.00 0.00 0.00 4.63
2149 5148 1.804748 CAAACTTTAGTCCCACCTCGC 59.195 52.381 0.00 0.00 0.00 5.03
2150 5149 0.323957 AACTTTAGTCCCACCTCGCC 59.676 55.000 0.00 0.00 0.00 5.54
2151 5150 1.221021 CTTTAGTCCCACCTCGCCC 59.779 63.158 0.00 0.00 0.00 6.13
2152 5151 1.536907 TTTAGTCCCACCTCGCCCA 60.537 57.895 0.00 0.00 0.00 5.36
2153 5152 1.550130 TTTAGTCCCACCTCGCCCAG 61.550 60.000 0.00 0.00 0.00 4.45
2161 5160 3.631046 CCTCGCCCAGGGATAGGC 61.631 72.222 10.89 0.00 38.91 3.93
2162 5161 2.844362 CTCGCCCAGGGATAGGCA 60.844 66.667 10.89 0.00 0.00 4.75
2163 5162 2.366301 TCGCCCAGGGATAGGCAA 60.366 61.111 10.89 0.00 0.00 4.52
2164 5163 2.203209 CGCCCAGGGATAGGCAAC 60.203 66.667 10.89 0.00 0.00 4.17
2165 5164 3.006677 GCCCAGGGATAGGCAACA 58.993 61.111 10.89 0.00 41.41 3.33
2166 5165 1.306296 GCCCAGGGATAGGCAACAA 59.694 57.895 10.89 0.00 41.41 2.83
2167 5166 0.753111 GCCCAGGGATAGGCAACAAG 60.753 60.000 10.89 0.00 41.41 3.16
2168 5167 0.918983 CCCAGGGATAGGCAACAAGA 59.081 55.000 0.00 0.00 41.41 3.02
2169 5168 1.408822 CCCAGGGATAGGCAACAAGAC 60.409 57.143 0.00 0.00 41.41 3.01
2170 5169 1.656652 CAGGGATAGGCAACAAGACG 58.343 55.000 0.00 0.00 41.41 4.18
2171 5170 1.066143 CAGGGATAGGCAACAAGACGT 60.066 52.381 0.00 0.00 41.41 4.34
2172 5171 1.066143 AGGGATAGGCAACAAGACGTG 60.066 52.381 0.00 0.00 41.41 4.49
2173 5172 1.338769 GGGATAGGCAACAAGACGTGT 60.339 52.381 0.00 0.00 44.64 4.49
2186 5185 5.613329 ACAAGACGTGTTTAAATAGTCCCA 58.387 37.500 0.00 0.00 37.01 4.37
2187 5186 5.467735 ACAAGACGTGTTTAAATAGTCCCAC 59.532 40.000 0.00 5.92 37.01 4.61
2188 5187 4.572909 AGACGTGTTTAAATAGTCCCACC 58.427 43.478 0.00 0.00 32.70 4.61
2189 5188 4.285260 AGACGTGTTTAAATAGTCCCACCT 59.715 41.667 0.00 0.00 32.70 4.00
2190 5189 4.976864 ACGTGTTTAAATAGTCCCACCTT 58.023 39.130 0.00 0.00 0.00 3.50
2194 5193 4.604490 TGTTTAAATAGTCCCACCTTCCCT 59.396 41.667 0.00 0.00 0.00 4.20
2198 5197 1.089978 TAGTCCCACCTTCCCTGAGA 58.910 55.000 0.00 0.00 0.00 3.27
2231 5230 0.031449 GCACCATCTCCGAGCTAGTC 59.969 60.000 0.00 0.00 0.00 2.59
2233 5232 1.606668 CACCATCTCCGAGCTAGTCTC 59.393 57.143 0.00 4.62 38.47 3.36
2251 5250 2.158593 TCTCTGGGTATCGAGAGGGAAG 60.159 54.545 14.32 0.00 43.35 3.46
2252 5251 1.850998 TCTGGGTATCGAGAGGGAAGA 59.149 52.381 0.00 0.00 0.00 2.87
2268 5267 2.866762 GGAAGATGTCCGATTAGTGCAC 59.133 50.000 9.40 9.40 36.40 4.57
2269 5268 3.430929 GGAAGATGTCCGATTAGTGCACT 60.431 47.826 25.12 25.12 36.40 4.40
2273 5272 3.520290 TGTCCGATTAGTGCACTAAGG 57.480 47.619 35.23 31.10 41.24 2.69
2276 5275 1.134521 CCGATTAGTGCACTAAGGGCA 60.135 52.381 35.23 19.13 41.24 5.36
2290 5289 2.048603 GGGCAGGTCATGTTGCTCC 61.049 63.158 15.43 12.19 40.15 4.70
2295 5294 0.396435 AGGTCATGTTGCTCCGTTGA 59.604 50.000 0.00 0.00 0.00 3.18
2299 5298 1.202758 TCATGTTGCTCCGTTGACCTT 60.203 47.619 0.00 0.00 0.00 3.50
2300 5299 1.069022 CATGTTGCTCCGTTGACCTTG 60.069 52.381 0.00 0.00 0.00 3.61
2311 5310 2.348591 CGTTGACCTTGAAACTTCTCGC 60.349 50.000 0.00 0.00 0.00 5.03
2338 5337 1.913951 AAGGAGGCCATCGCATGACA 61.914 55.000 5.01 0.00 36.38 3.58
2340 5339 1.450134 GAGGCCATCGCATGACACA 60.450 57.895 5.01 0.00 36.38 3.72
2352 5351 0.322816 ATGACACATGCCACACCCTC 60.323 55.000 0.00 0.00 0.00 4.30
2361 5361 0.388520 GCCACACCCTCGCATTTTTC 60.389 55.000 0.00 0.00 0.00 2.29
2364 5364 1.468520 CACACCCTCGCATTTTTCGAT 59.531 47.619 0.00 0.00 35.25 3.59
2392 5392 7.529185 CGCGTGCAATATTCGAGAAATTTATTA 59.471 33.333 0.00 0.00 0.00 0.98
2413 5918 2.200067 CTCTGCTAGAGTTTCATGCCG 58.800 52.381 0.00 0.00 37.57 5.69
2417 5922 1.936547 GCTAGAGTTTCATGCCGGAAG 59.063 52.381 5.05 0.00 0.00 3.46
2424 5929 1.243342 TTCATGCCGGAAGTTGCAGG 61.243 55.000 5.05 0.00 41.46 4.85
2427 5932 2.032681 GCCGGAAGTTGCAGGTCT 59.967 61.111 5.05 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 0.391130 TGCAGTCACCACTTATCGCC 60.391 55.000 0.00 0.00 0.00 5.54
36 37 0.318699 TCTGGTTGCGACAAGTCTCG 60.319 55.000 8.41 0.00 36.70 4.04
72 73 2.811431 CGCCTCCATACTGTCACAAAAA 59.189 45.455 0.00 0.00 0.00 1.94
74 75 1.943968 GCGCCTCCATACTGTCACAAA 60.944 52.381 0.00 0.00 0.00 2.83
79 80 2.279517 CGGCGCCTCCATACTGTC 60.280 66.667 26.68 0.00 34.01 3.51
81 82 3.849951 ACCGGCGCCTCCATACTG 61.850 66.667 26.68 5.71 34.01 2.74
82 83 3.849951 CACCGGCGCCTCCATACT 61.850 66.667 26.68 0.00 34.01 2.12
83 84 4.910585 CCACCGGCGCCTCCATAC 62.911 72.222 26.68 0.00 34.01 2.39
93 94 1.388837 AAGAACACAAACCCACCGGC 61.389 55.000 0.00 0.00 0.00 6.13
146 150 4.391830 TCATGTTTTGGACGTAGATTCAGC 59.608 41.667 0.00 0.00 0.00 4.26
164 168 9.558396 AAATACAATGTTGAAAATGGTTCATGT 57.442 25.926 0.00 0.00 0.00 3.21
181 185 7.531280 AGATCTTGACGTGAGAAATACAATG 57.469 36.000 0.00 0.00 0.00 2.82
193 197 6.871044 TCTAATTTCGAAGATCTTGACGTG 57.129 37.500 14.00 0.00 35.04 4.49
226 230 7.326063 CCCAAAAAGTTCTTGTCGAAACATATC 59.674 37.037 0.93 0.00 34.73 1.63
235 239 2.861462 TGCCCAAAAAGTTCTTGTCG 57.139 45.000 0.00 0.00 0.00 4.35
238 242 6.028987 CACAAATTTGCCCAAAAAGTTCTTG 58.971 36.000 18.12 0.08 33.56 3.02
306 310 4.292977 AGCACTTGCAAGTTGAAACTAC 57.707 40.909 29.23 11.03 45.16 2.73
350 360 3.624326 TCTTCAAAATGAGCACGGTTG 57.376 42.857 0.00 0.00 0.00 3.77
470 480 5.237561 ACTTTTCTGTTTTTGGTTTGCGTTT 59.762 32.000 0.00 0.00 0.00 3.60
471 481 4.752604 ACTTTTCTGTTTTTGGTTTGCGTT 59.247 33.333 0.00 0.00 0.00 4.84
473 483 4.919677 ACTTTTCTGTTTTTGGTTTGCG 57.080 36.364 0.00 0.00 0.00 4.85
491 2490 8.467963 TTTTCTTCGGGTTTCCTATAAAACTT 57.532 30.769 1.20 0.00 38.81 2.66
492 2491 8.355169 GTTTTTCTTCGGGTTTCCTATAAAACT 58.645 33.333 0.00 0.00 38.81 2.66
493 2492 7.596248 GGTTTTTCTTCGGGTTTCCTATAAAAC 59.404 37.037 0.00 0.00 38.21 2.43
494 2493 7.287235 TGGTTTTTCTTCGGGTTTCCTATAAAA 59.713 33.333 0.00 0.00 0.00 1.52
495 2494 6.776603 TGGTTTTTCTTCGGGTTTCCTATAAA 59.223 34.615 0.00 0.00 0.00 1.40
496 2495 6.305411 TGGTTTTTCTTCGGGTTTCCTATAA 58.695 36.000 0.00 0.00 0.00 0.98
499 3396 4.167652 TGGTTTTTCTTCGGGTTTCCTA 57.832 40.909 0.00 0.00 0.00 2.94
501 3398 4.330944 AATGGTTTTTCTTCGGGTTTCC 57.669 40.909 0.00 0.00 0.00 3.13
502 3399 5.353111 TGAAATGGTTTTTCTTCGGGTTTC 58.647 37.500 0.42 0.00 0.00 2.78
503 3400 5.346181 TGAAATGGTTTTTCTTCGGGTTT 57.654 34.783 0.42 0.00 0.00 3.27
506 3403 5.537188 TCATTGAAATGGTTTTTCTTCGGG 58.463 37.500 3.31 0.00 37.03 5.14
509 3406 9.920826 GTTTTCTCATTGAAATGGTTTTTCTTC 57.079 29.630 3.31 0.00 43.34 2.87
510 3407 8.603181 CGTTTTCTCATTGAAATGGTTTTTCTT 58.397 29.630 3.31 0.00 43.34 2.52
512 3409 6.845782 GCGTTTTCTCATTGAAATGGTTTTTC 59.154 34.615 3.31 0.00 43.34 2.29
514 3411 5.236263 GGCGTTTTCTCATTGAAATGGTTTT 59.764 36.000 3.31 0.00 43.34 2.43
520 3417 4.202202 TGTTGGGCGTTTTCTCATTGAAAT 60.202 37.500 0.00 0.00 43.34 2.17
530 3427 0.593008 GAACCGTGTTGGGCGTTTTC 60.593 55.000 0.00 0.00 44.64 2.29
535 3435 4.007940 CGTGAACCGTGTTGGGCG 62.008 66.667 0.00 0.00 44.64 6.13
546 3446 3.529085 GTTTCAAAGTCGCTACGTGAAC 58.471 45.455 0.00 0.00 35.53 3.18
547 3447 2.216940 CGTTTCAAAGTCGCTACGTGAA 59.783 45.455 0.00 6.48 34.61 3.18
550 3450 0.505655 GCGTTTCAAAGTCGCTACGT 59.494 50.000 0.00 0.00 45.29 3.57
602 3502 3.720002 TGGAAACCAGAGAAACTAAGGGT 59.280 43.478 0.00 0.00 0.00 4.34
603 3503 4.367039 TGGAAACCAGAGAAACTAAGGG 57.633 45.455 0.00 0.00 0.00 3.95
605 3505 5.412904 GGACATGGAAACCAGAGAAACTAAG 59.587 44.000 0.00 0.00 36.75 2.18
613 3525 3.262915 AGAAGAGGACATGGAAACCAGAG 59.737 47.826 0.00 0.00 36.75 3.35
629 3541 1.448922 CGGGGCCGTCTCTAGAAGAG 61.449 65.000 0.00 0.00 43.64 2.85
641 3553 4.114997 GAATGTGTTGCGGGGCCG 62.115 66.667 0.00 0.00 43.09 6.13
648 3560 4.035675 GGCCACTATTCTAGAATGTGTTGC 59.964 45.833 27.60 26.20 32.79 4.17
649 3561 4.576463 GGGCCACTATTCTAGAATGTGTTG 59.424 45.833 27.60 21.49 32.79 3.33
650 3562 4.227300 TGGGCCACTATTCTAGAATGTGTT 59.773 41.667 27.60 11.78 32.79 3.32
654 3566 3.392616 ACCTGGGCCACTATTCTAGAATG 59.607 47.826 25.22 17.38 32.50 2.67
655 3567 3.392616 CACCTGGGCCACTATTCTAGAAT 59.607 47.826 21.28 21.28 34.93 2.40
656 3568 2.771943 CACCTGGGCCACTATTCTAGAA 59.228 50.000 7.82 7.82 0.00 2.10
657 3569 2.398588 CACCTGGGCCACTATTCTAGA 58.601 52.381 0.00 0.00 0.00 2.43
658 3570 1.202698 GCACCTGGGCCACTATTCTAG 60.203 57.143 0.00 0.00 0.00 2.43
659 3571 0.837272 GCACCTGGGCCACTATTCTA 59.163 55.000 0.00 0.00 0.00 2.10
662 3574 1.304282 CAGCACCTGGGCCACTATT 59.696 57.895 0.00 0.00 0.00 1.73
798 3710 0.036306 TTCTCCTTCGGTTTCCAGCC 59.964 55.000 0.00 0.00 0.00 4.85
807 3719 1.809684 GGAGTTTGGTTCTCCTTCGG 58.190 55.000 4.91 0.00 45.56 4.30
822 3734 6.163923 GAGAACTCTCAAATCGACGGGAGT 62.164 50.000 7.80 7.80 44.25 3.85
824 3736 2.163815 GAGAACTCTCAAATCGACGGGA 59.836 50.000 1.73 0.00 42.42 5.14
825 3737 2.531206 GAGAACTCTCAAATCGACGGG 58.469 52.381 1.73 0.00 42.42 5.28
831 3743 4.681744 AGCATCTCGAGAACTCTCAAATC 58.318 43.478 20.91 0.00 43.00 2.17
834 3746 3.507622 TGAAGCATCTCGAGAACTCTCAA 59.492 43.478 20.91 5.95 43.00 3.02
835 3747 3.084786 TGAAGCATCTCGAGAACTCTCA 58.915 45.455 20.91 19.35 43.00 3.27
885 3797 2.191641 GATGGGACTGAGGCCAGC 59.808 66.667 6.70 0.00 44.16 4.85
899 3811 4.873810 TTGGGATGGCGGGCGATG 62.874 66.667 0.00 0.00 0.00 3.84
900 3812 4.122149 TTTGGGATGGCGGGCGAT 62.122 61.111 0.00 0.00 0.00 4.58
903 3815 3.140814 GAGTTTGGGATGGCGGGC 61.141 66.667 0.00 0.00 0.00 6.13
904 3816 1.304052 TTGAGTTTGGGATGGCGGG 60.304 57.895 0.00 0.00 0.00 6.13
905 3817 1.937546 GCTTGAGTTTGGGATGGCGG 61.938 60.000 0.00 0.00 0.00 6.13
906 3818 1.508088 GCTTGAGTTTGGGATGGCG 59.492 57.895 0.00 0.00 0.00 5.69
907 3819 0.899717 TGGCTTGAGTTTGGGATGGC 60.900 55.000 0.00 0.00 0.00 4.40
915 3827 0.947244 CTTGACGCTGGCTTGAGTTT 59.053 50.000 0.00 0.00 0.00 2.66
916 3828 1.510480 GCTTGACGCTGGCTTGAGTT 61.510 55.000 0.00 0.00 35.14 3.01
917 3829 1.963338 GCTTGACGCTGGCTTGAGT 60.963 57.895 0.00 0.00 35.14 3.41
919 3831 1.100463 TTTGCTTGACGCTGGCTTGA 61.100 50.000 0.00 0.00 40.11 3.02
920 3832 0.248990 TTTTGCTTGACGCTGGCTTG 60.249 50.000 0.00 0.00 40.11 4.01
921 3833 0.675633 ATTTTGCTTGACGCTGGCTT 59.324 45.000 0.00 0.00 40.11 4.35
922 3834 0.242017 GATTTTGCTTGACGCTGGCT 59.758 50.000 0.00 0.00 40.11 4.75
924 3836 0.883833 AGGATTTTGCTTGACGCTGG 59.116 50.000 0.00 0.00 40.11 4.85
925 3837 2.474526 CGTAGGATTTTGCTTGACGCTG 60.475 50.000 0.00 0.00 40.11 5.18
926 3838 1.732259 CGTAGGATTTTGCTTGACGCT 59.268 47.619 0.00 0.00 40.11 5.07
927 3839 1.463444 ACGTAGGATTTTGCTTGACGC 59.537 47.619 0.00 0.00 39.77 5.19
928 3840 3.241552 CGTACGTAGGATTTTGCTTGACG 60.242 47.826 9.66 0.00 35.10 4.35
929 3841 3.922240 TCGTACGTAGGATTTTGCTTGAC 59.078 43.478 16.05 0.00 0.00 3.18
930 3842 4.177165 TCGTACGTAGGATTTTGCTTGA 57.823 40.909 16.05 0.00 0.00 3.02
932 3844 4.117685 GGATCGTACGTAGGATTTTGCTT 58.882 43.478 26.47 8.34 31.62 3.91
934 3846 2.470257 CGGATCGTACGTAGGATTTTGC 59.530 50.000 26.47 15.99 31.62 3.68
936 3848 4.843220 ATCGGATCGTACGTAGGATTTT 57.157 40.909 26.47 10.33 31.62 1.82
937 3849 4.756642 TGTATCGGATCGTACGTAGGATTT 59.243 41.667 26.47 16.19 31.62 2.17
940 3852 3.005791 TCTGTATCGGATCGTACGTAGGA 59.994 47.826 19.26 19.26 0.00 2.94
943 3855 5.929697 AATTCTGTATCGGATCGTACGTA 57.070 39.130 16.05 2.34 0.00 3.57
944 3856 4.825546 AATTCTGTATCGGATCGTACGT 57.174 40.909 16.05 2.33 0.00 3.57
945 3857 4.615961 GGAAATTCTGTATCGGATCGTACG 59.384 45.833 9.53 9.53 0.00 3.67
985 3946 1.126846 CGACATTCTCGGTGTTGCTTC 59.873 52.381 0.00 0.00 38.87 3.86
1140 4106 1.612442 CTCGGGGGTCTCCTTCCAA 60.612 63.158 0.00 0.00 35.33 3.53
1508 4474 2.661537 TTGCAGACCTCGCACACG 60.662 61.111 0.00 0.00 39.59 4.49
1562 4529 2.329690 CCTCGCCAGACTCGATCG 59.670 66.667 9.36 9.36 35.25 3.69
1603 4577 1.940613 ACAAGAACAGAAACGACCAGC 59.059 47.619 0.00 0.00 0.00 4.85
1605 4579 2.980568 ACACAAGAACAGAAACGACCA 58.019 42.857 0.00 0.00 0.00 4.02
1643 4619 9.071276 ACGGCTTATTTCTCATTTATTCATCAT 57.929 29.630 0.00 0.00 0.00 2.45
1672 4648 0.387622 CTGCACTGCACCCAAAATCG 60.388 55.000 0.00 0.00 33.79 3.34
1708 4684 6.826741 ACTAGTACAAGCAAAGAAAGGTCAAA 59.173 34.615 0.00 0.00 0.00 2.69
1711 4687 6.346678 CGAACTAGTACAAGCAAAGAAAGGTC 60.347 42.308 0.00 0.00 0.00 3.85
1713 4689 5.107065 CCGAACTAGTACAAGCAAAGAAAGG 60.107 44.000 0.00 0.00 0.00 3.11
1718 4697 4.330074 CCATCCGAACTAGTACAAGCAAAG 59.670 45.833 0.00 0.00 0.00 2.77
1746 4728 8.450578 TGAATCTTTTCAGCTACTTGAGAAAA 57.549 30.769 7.06 7.06 36.94 2.29
1747 4729 8.627208 ATGAATCTTTTCAGCTACTTGAGAAA 57.373 30.769 0.00 0.00 44.75 2.52
1748 4730 8.509690 CAATGAATCTTTTCAGCTACTTGAGAA 58.490 33.333 0.00 0.00 44.75 2.87
1749 4731 7.663081 ACAATGAATCTTTTCAGCTACTTGAGA 59.337 33.333 0.00 0.00 44.75 3.27
1750 4732 7.814642 ACAATGAATCTTTTCAGCTACTTGAG 58.185 34.615 0.00 0.00 44.75 3.02
1751 4733 7.750229 ACAATGAATCTTTTCAGCTACTTGA 57.250 32.000 0.00 0.00 44.75 3.02
1754 4736 7.661437 TGTGTACAATGAATCTTTTCAGCTACT 59.339 33.333 0.00 0.00 44.75 2.57
1755 4737 7.806690 TGTGTACAATGAATCTTTTCAGCTAC 58.193 34.615 0.00 0.00 44.75 3.58
1756 4738 7.977789 TGTGTACAATGAATCTTTTCAGCTA 57.022 32.000 0.00 0.00 44.75 3.32
1757 4739 6.882610 TGTGTACAATGAATCTTTTCAGCT 57.117 33.333 0.00 0.00 44.75 4.24
1758 4740 6.583806 CCTTGTGTACAATGAATCTTTTCAGC 59.416 38.462 0.00 0.00 44.75 4.26
1759 4741 7.874940 TCCTTGTGTACAATGAATCTTTTCAG 58.125 34.615 0.00 0.00 44.75 3.02
1760 4742 7.815840 TCCTTGTGTACAATGAATCTTTTCA 57.184 32.000 0.00 0.00 45.57 2.69
1761 4743 9.185192 CTTTCCTTGTGTACAATGAATCTTTTC 57.815 33.333 13.60 0.00 39.19 2.29
1762 4744 8.912988 TCTTTCCTTGTGTACAATGAATCTTTT 58.087 29.630 13.60 0.00 39.19 2.27
1763 4745 8.463930 TCTTTCCTTGTGTACAATGAATCTTT 57.536 30.769 13.60 0.00 39.19 2.52
1764 4746 8.641498 ATCTTTCCTTGTGTACAATGAATCTT 57.359 30.769 13.60 2.92 39.19 2.40
1765 4747 8.641498 AATCTTTCCTTGTGTACAATGAATCT 57.359 30.769 13.60 3.05 39.19 2.40
1766 4748 8.514594 TGAATCTTTCCTTGTGTACAATGAATC 58.485 33.333 13.60 9.95 39.19 2.52
1767 4749 8.299570 GTGAATCTTTCCTTGTGTACAATGAAT 58.700 33.333 13.60 2.69 39.19 2.57
1768 4750 7.502226 AGTGAATCTTTCCTTGTGTACAATGAA 59.498 33.333 10.19 10.19 38.23 2.57
1769 4751 6.998074 AGTGAATCTTTCCTTGTGTACAATGA 59.002 34.615 0.00 0.00 35.02 2.57
1770 4752 7.041167 TCAGTGAATCTTTCCTTGTGTACAATG 60.041 37.037 0.00 0.00 35.02 2.82
1771 4753 6.998074 TCAGTGAATCTTTCCTTGTGTACAAT 59.002 34.615 0.00 0.00 35.02 2.71
1772 4754 6.353323 TCAGTGAATCTTTCCTTGTGTACAA 58.647 36.000 0.00 0.00 0.00 2.41
1773 4755 5.924356 TCAGTGAATCTTTCCTTGTGTACA 58.076 37.500 0.00 0.00 0.00 2.90
1774 4756 6.861065 TTCAGTGAATCTTTCCTTGTGTAC 57.139 37.500 0.08 0.00 0.00 2.90
1775 4757 7.873719 TTTTCAGTGAATCTTTCCTTGTGTA 57.126 32.000 6.36 0.00 0.00 2.90
1776 4758 6.773976 TTTTCAGTGAATCTTTCCTTGTGT 57.226 33.333 6.36 0.00 0.00 3.72
1777 4759 6.643770 CCATTTTCAGTGAATCTTTCCTTGTG 59.356 38.462 6.36 0.00 0.00 3.33
1778 4760 6.739565 GCCATTTTCAGTGAATCTTTCCTTGT 60.740 38.462 6.36 0.00 0.00 3.16
1779 4761 5.636543 GCCATTTTCAGTGAATCTTTCCTTG 59.363 40.000 6.36 0.00 0.00 3.61
1780 4762 5.305128 TGCCATTTTCAGTGAATCTTTCCTT 59.695 36.000 6.36 0.00 0.00 3.36
1781 4763 4.834496 TGCCATTTTCAGTGAATCTTTCCT 59.166 37.500 6.36 0.00 0.00 3.36
1782 4764 5.138125 TGCCATTTTCAGTGAATCTTTCC 57.862 39.130 6.36 0.00 0.00 3.13
1783 4765 4.624452 GCTGCCATTTTCAGTGAATCTTTC 59.376 41.667 6.36 0.00 34.21 2.62
1784 4766 4.562143 GGCTGCCATTTTCAGTGAATCTTT 60.562 41.667 15.17 0.00 34.21 2.52
1785 4767 3.056322 GGCTGCCATTTTCAGTGAATCTT 60.056 43.478 15.17 0.00 34.21 2.40
1786 4768 2.494870 GGCTGCCATTTTCAGTGAATCT 59.505 45.455 15.17 0.00 34.21 2.40
1787 4769 2.494870 AGGCTGCCATTTTCAGTGAATC 59.505 45.455 22.65 0.00 34.21 2.52
1788 4770 2.232941 CAGGCTGCCATTTTCAGTGAAT 59.767 45.455 22.65 0.00 34.21 2.57
1789 4771 1.614903 CAGGCTGCCATTTTCAGTGAA 59.385 47.619 22.65 0.08 34.21 3.18
1790 4772 1.250328 CAGGCTGCCATTTTCAGTGA 58.750 50.000 22.65 0.00 34.21 3.41
1791 4773 0.245539 CCAGGCTGCCATTTTCAGTG 59.754 55.000 22.65 7.39 34.21 3.66
1792 4774 1.538687 GCCAGGCTGCCATTTTCAGT 61.539 55.000 22.65 0.00 34.21 3.41
1793 4775 1.217244 GCCAGGCTGCCATTTTCAG 59.783 57.895 22.65 1.98 34.79 3.02
1794 4776 1.120184 TTGCCAGGCTGCCATTTTCA 61.120 50.000 22.65 8.15 0.00 2.69
1795 4777 0.390735 CTTGCCAGGCTGCCATTTTC 60.391 55.000 22.65 5.52 0.00 2.29
1796 4778 1.675219 CTTGCCAGGCTGCCATTTT 59.325 52.632 22.65 0.00 0.00 1.82
1797 4779 2.951101 GCTTGCCAGGCTGCCATTT 61.951 57.895 22.65 0.00 0.00 2.32
1798 4780 3.387947 GCTTGCCAGGCTGCCATT 61.388 61.111 22.65 0.00 0.00 3.16
1799 4781 4.689549 TGCTTGCCAGGCTGCCAT 62.690 61.111 22.65 2.87 0.00 4.40
1807 4789 0.905357 ACCTAGTACCTGCTTGCCAG 59.095 55.000 0.00 0.00 41.41 4.85
1808 4790 0.902531 GACCTAGTACCTGCTTGCCA 59.097 55.000 0.00 0.00 0.00 4.92
1809 4791 1.134670 CAGACCTAGTACCTGCTTGCC 60.135 57.143 0.00 0.00 0.00 4.52
1810 4792 1.740718 GCAGACCTAGTACCTGCTTGC 60.741 57.143 16.32 2.79 46.96 4.01
1811 4793 2.301577 GCAGACCTAGTACCTGCTTG 57.698 55.000 16.32 0.00 46.96 4.01
1815 4797 5.916661 TCTTTAAGCAGACCTAGTACCTG 57.083 43.478 0.00 0.00 0.00 4.00
1816 4798 8.605325 TTATTCTTTAAGCAGACCTAGTACCT 57.395 34.615 0.00 0.00 0.00 3.08
1817 4799 9.478768 GATTATTCTTTAAGCAGACCTAGTACC 57.521 37.037 0.00 0.00 0.00 3.34
1818 4800 9.182933 CGATTATTCTTTAAGCAGACCTAGTAC 57.817 37.037 0.00 0.00 0.00 2.73
1819 4801 9.128404 TCGATTATTCTTTAAGCAGACCTAGTA 57.872 33.333 0.00 0.00 0.00 1.82
1820 4802 8.008513 TCGATTATTCTTTAAGCAGACCTAGT 57.991 34.615 0.00 0.00 0.00 2.57
1822 4804 9.909644 GTATCGATTATTCTTTAAGCAGACCTA 57.090 33.333 1.71 0.00 0.00 3.08
1823 4805 8.421784 TGTATCGATTATTCTTTAAGCAGACCT 58.578 33.333 1.71 0.00 0.00 3.85
1824 4806 8.488764 GTGTATCGATTATTCTTTAAGCAGACC 58.511 37.037 1.71 0.00 0.00 3.85
1825 4807 8.208560 CGTGTATCGATTATTCTTTAAGCAGAC 58.791 37.037 1.71 0.00 42.86 3.51
1851 4833 2.898705 AGCTGAATGTGAGACGGATTC 58.101 47.619 0.00 0.00 0.00 2.52
1852 4834 3.340814 AAGCTGAATGTGAGACGGATT 57.659 42.857 0.00 0.00 0.00 3.01
1856 4847 4.675190 AATGAAAGCTGAATGTGAGACG 57.325 40.909 0.00 0.00 0.00 4.18
1861 4852 5.740569 CCACGATTAATGAAAGCTGAATGTG 59.259 40.000 0.00 0.00 0.00 3.21
1885 4876 4.649674 TCAGGGTATTGATCAGTGTAGACC 59.350 45.833 0.13 0.63 0.00 3.85
1918 4909 7.171508 GTGAGATAGAAGTCACACAATCAACAA 59.828 37.037 0.00 0.00 42.31 2.83
1929 4920 5.652994 ACTGAAGGTGAGATAGAAGTCAC 57.347 43.478 0.00 0.00 42.06 3.67
2016 5011 8.103935 TGTGATGATATGGGTGTGTACTAAAAA 58.896 33.333 0.00 0.00 0.00 1.94
2017 5012 7.551262 GTGTGATGATATGGGTGTGTACTAAAA 59.449 37.037 0.00 0.00 0.00 1.52
2018 5013 7.045416 GTGTGATGATATGGGTGTGTACTAAA 58.955 38.462 0.00 0.00 0.00 1.85
2019 5014 6.155393 TGTGTGATGATATGGGTGTGTACTAA 59.845 38.462 0.00 0.00 0.00 2.24
2020 5015 5.659079 TGTGTGATGATATGGGTGTGTACTA 59.341 40.000 0.00 0.00 0.00 1.82
2046 5045 8.656849 AGATGATATGTCACGTTTGAGTTAAAC 58.343 33.333 0.00 0.51 39.63 2.01
2047 5046 8.771920 AGATGATATGTCACGTTTGAGTTAAA 57.228 30.769 0.00 0.00 37.14 1.52
2075 5074 9.730420 GCAAATAAGTCTTAAGTTTGAACTTCA 57.270 29.630 17.31 1.81 45.65 3.02
2076 5075 9.181805 GGCAAATAAGTCTTAAGTTTGAACTTC 57.818 33.333 17.31 0.00 45.65 3.01
2078 5077 8.232913 TGGCAAATAAGTCTTAAGTTTGAACT 57.767 30.769 17.31 4.31 42.04 3.01
2079 5078 8.865590 TTGGCAAATAAGTCTTAAGTTTGAAC 57.134 30.769 17.31 11.62 32.93 3.18
2080 5079 8.908903 TCTTGGCAAATAAGTCTTAAGTTTGAA 58.091 29.630 17.31 7.33 32.93 2.69
2081 5080 8.458573 TCTTGGCAAATAAGTCTTAAGTTTGA 57.541 30.769 17.31 1.58 32.93 2.69
2082 5081 7.327032 GCTCTTGGCAAATAAGTCTTAAGTTTG 59.673 37.037 0.00 11.79 41.35 2.93
2083 5082 7.231519 AGCTCTTGGCAAATAAGTCTTAAGTTT 59.768 33.333 0.00 1.68 44.79 2.66
2084 5083 6.717084 AGCTCTTGGCAAATAAGTCTTAAGTT 59.283 34.615 0.00 0.00 44.79 2.66
2085 5084 6.241645 AGCTCTTGGCAAATAAGTCTTAAGT 58.758 36.000 0.00 0.00 44.79 2.24
2086 5085 6.749923 AGCTCTTGGCAAATAAGTCTTAAG 57.250 37.500 0.00 0.00 44.79 1.85
2087 5086 6.312918 CGTAGCTCTTGGCAAATAAGTCTTAA 59.687 38.462 0.00 0.00 44.79 1.85
2088 5087 5.810587 CGTAGCTCTTGGCAAATAAGTCTTA 59.189 40.000 0.00 0.00 44.79 2.10
2089 5088 4.631813 CGTAGCTCTTGGCAAATAAGTCTT 59.368 41.667 0.00 0.00 44.79 3.01
2090 5089 4.184629 CGTAGCTCTTGGCAAATAAGTCT 58.815 43.478 0.00 4.31 44.79 3.24
2091 5090 4.522297 CGTAGCTCTTGGCAAATAAGTC 57.478 45.455 0.00 0.00 44.79 3.01
2108 5107 2.033662 GCTTAATCTTTGCCGAGCGTAG 60.034 50.000 0.00 0.00 0.00 3.51
2109 5108 1.931172 GCTTAATCTTTGCCGAGCGTA 59.069 47.619 0.00 0.00 0.00 4.42
2110 5109 0.727398 GCTTAATCTTTGCCGAGCGT 59.273 50.000 0.00 0.00 0.00 5.07
2111 5110 0.726827 TGCTTAATCTTTGCCGAGCG 59.273 50.000 0.00 0.00 33.03 5.03
2112 5111 2.917343 GTTTGCTTAATCTTTGCCGAGC 59.083 45.455 0.00 0.00 0.00 5.03
2113 5112 4.425577 AGTTTGCTTAATCTTTGCCGAG 57.574 40.909 0.00 0.00 0.00 4.63
2114 5113 4.846779 AAGTTTGCTTAATCTTTGCCGA 57.153 36.364 0.00 0.00 32.27 5.54
2115 5114 6.149633 ACTAAAGTTTGCTTAATCTTTGCCG 58.850 36.000 0.00 0.00 33.95 5.69
2116 5115 6.586463 GGACTAAAGTTTGCTTAATCTTTGCC 59.414 38.462 0.00 0.00 33.95 4.52
2117 5116 6.586463 GGGACTAAAGTTTGCTTAATCTTTGC 59.414 38.462 0.00 0.00 33.95 3.68
2118 5117 7.595130 GTGGGACTAAAGTTTGCTTAATCTTTG 59.405 37.037 0.00 0.00 33.95 2.77
2119 5118 7.255836 GGTGGGACTAAAGTTTGCTTAATCTTT 60.256 37.037 0.00 0.00 33.95 2.52
2120 5119 6.208797 GGTGGGACTAAAGTTTGCTTAATCTT 59.791 38.462 0.00 0.00 33.95 2.40
2121 5120 5.710567 GGTGGGACTAAAGTTTGCTTAATCT 59.289 40.000 0.00 0.00 33.95 2.40
2122 5121 5.710567 AGGTGGGACTAAAGTTTGCTTAATC 59.289 40.000 0.00 0.00 33.95 1.75
2123 5122 5.641155 AGGTGGGACTAAAGTTTGCTTAAT 58.359 37.500 0.00 0.00 33.95 1.40
2124 5123 5.056553 AGGTGGGACTAAAGTTTGCTTAA 57.943 39.130 0.00 0.00 33.95 1.85
2125 5124 4.648651 GAGGTGGGACTAAAGTTTGCTTA 58.351 43.478 0.00 0.00 33.95 3.09
2126 5125 3.487372 GAGGTGGGACTAAAGTTTGCTT 58.513 45.455 0.00 0.00 36.30 3.91
2127 5126 2.550208 CGAGGTGGGACTAAAGTTTGCT 60.550 50.000 0.00 0.00 0.00 3.91
2128 5127 1.804748 CGAGGTGGGACTAAAGTTTGC 59.195 52.381 0.00 0.00 0.00 3.68
2129 5128 1.804748 GCGAGGTGGGACTAAAGTTTG 59.195 52.381 0.00 0.00 0.00 2.93
2130 5129 1.271217 GGCGAGGTGGGACTAAAGTTT 60.271 52.381 0.00 0.00 0.00 2.66
2131 5130 0.323957 GGCGAGGTGGGACTAAAGTT 59.676 55.000 0.00 0.00 0.00 2.66
2132 5131 1.551019 GGGCGAGGTGGGACTAAAGT 61.551 60.000 0.00 0.00 0.00 2.66
2133 5132 1.221021 GGGCGAGGTGGGACTAAAG 59.779 63.158 0.00 0.00 0.00 1.85
2134 5133 1.536907 TGGGCGAGGTGGGACTAAA 60.537 57.895 0.00 0.00 0.00 1.85
2135 5134 1.987855 CTGGGCGAGGTGGGACTAA 60.988 63.158 0.00 0.00 0.00 2.24
2136 5135 2.363795 CTGGGCGAGGTGGGACTA 60.364 66.667 0.00 0.00 0.00 2.59
2141 5140 2.445845 TATCCCTGGGCGAGGTGG 60.446 66.667 14.85 0.00 40.87 4.61
2142 5141 2.511452 CCTATCCCTGGGCGAGGTG 61.511 68.421 19.55 6.28 40.87 4.00
2143 5142 2.122813 CCTATCCCTGGGCGAGGT 60.123 66.667 19.55 0.00 40.87 3.85
2144 5143 3.631046 GCCTATCCCTGGGCGAGG 61.631 72.222 22.19 22.19 39.45 4.63
2149 5148 0.918983 TCTTGTTGCCTATCCCTGGG 59.081 55.000 6.33 6.33 0.00 4.45
2150 5149 1.743772 CGTCTTGTTGCCTATCCCTGG 60.744 57.143 0.00 0.00 0.00 4.45
2151 5150 1.066143 ACGTCTTGTTGCCTATCCCTG 60.066 52.381 0.00 0.00 0.00 4.45
2152 5151 1.066143 CACGTCTTGTTGCCTATCCCT 60.066 52.381 0.00 0.00 0.00 4.20
2153 5152 1.338769 ACACGTCTTGTTGCCTATCCC 60.339 52.381 0.00 0.00 33.09 3.85
2154 5153 2.094762 ACACGTCTTGTTGCCTATCC 57.905 50.000 0.00 0.00 33.09 2.59
2163 5162 5.467735 GTGGGACTATTTAAACACGTCTTGT 59.532 40.000 11.04 0.00 41.74 3.16
2164 5163 5.106830 GGTGGGACTATTTAAACACGTCTTG 60.107 44.000 11.04 0.00 0.00 3.02
2165 5164 4.999311 GGTGGGACTATTTAAACACGTCTT 59.001 41.667 11.04 0.00 0.00 3.01
2166 5165 4.285260 AGGTGGGACTATTTAAACACGTCT 59.715 41.667 11.04 0.00 0.00 4.18
2167 5166 4.572909 AGGTGGGACTATTTAAACACGTC 58.427 43.478 0.00 0.00 0.00 4.34
2168 5167 4.628963 AGGTGGGACTATTTAAACACGT 57.371 40.909 0.00 0.00 0.00 4.49
2169 5168 4.393990 GGAAGGTGGGACTATTTAAACACG 59.606 45.833 0.00 0.00 0.00 4.49
2170 5169 4.703575 GGGAAGGTGGGACTATTTAAACAC 59.296 45.833 0.00 0.00 0.00 3.32
2171 5170 4.604490 AGGGAAGGTGGGACTATTTAAACA 59.396 41.667 0.00 0.00 0.00 2.83
2172 5171 4.948004 CAGGGAAGGTGGGACTATTTAAAC 59.052 45.833 0.00 0.00 0.00 2.01
2173 5172 4.853276 TCAGGGAAGGTGGGACTATTTAAA 59.147 41.667 0.00 0.00 0.00 1.52
2174 5173 4.440808 TCAGGGAAGGTGGGACTATTTAA 58.559 43.478 0.00 0.00 0.00 1.52
2175 5174 4.037927 CTCAGGGAAGGTGGGACTATTTA 58.962 47.826 0.00 0.00 0.00 1.40
2176 5175 2.846827 CTCAGGGAAGGTGGGACTATTT 59.153 50.000 0.00 0.00 0.00 1.40
2177 5176 2.045885 TCTCAGGGAAGGTGGGACTATT 59.954 50.000 0.00 0.00 0.00 1.73
2178 5177 1.651770 TCTCAGGGAAGGTGGGACTAT 59.348 52.381 0.00 0.00 0.00 2.12
2179 5178 1.089978 TCTCAGGGAAGGTGGGACTA 58.910 55.000 0.00 0.00 0.00 2.59
2180 5179 0.545548 GTCTCAGGGAAGGTGGGACT 60.546 60.000 0.00 0.00 41.51 3.85
2181 5180 1.554583 GGTCTCAGGGAAGGTGGGAC 61.555 65.000 0.00 0.00 43.64 4.46
2182 5181 1.229529 GGTCTCAGGGAAGGTGGGA 60.230 63.158 0.00 0.00 0.00 4.37
2183 5182 2.660064 CGGTCTCAGGGAAGGTGGG 61.660 68.421 0.00 0.00 0.00 4.61
2184 5183 2.982130 CGGTCTCAGGGAAGGTGG 59.018 66.667 0.00 0.00 0.00 4.61
2185 5184 1.831652 AAGCGGTCTCAGGGAAGGTG 61.832 60.000 0.00 0.00 0.00 4.00
2186 5185 1.536662 AAGCGGTCTCAGGGAAGGT 60.537 57.895 0.00 0.00 0.00 3.50
2187 5186 1.078848 CAAGCGGTCTCAGGGAAGG 60.079 63.158 0.00 0.00 0.00 3.46
2188 5187 0.895530 TACAAGCGGTCTCAGGGAAG 59.104 55.000 0.00 0.00 0.00 3.46
2189 5188 1.344065 TTACAAGCGGTCTCAGGGAA 58.656 50.000 0.00 0.00 0.00 3.97
2190 5189 1.001633 GTTTACAAGCGGTCTCAGGGA 59.998 52.381 0.00 0.00 0.00 4.20
2231 5230 2.158593 TCTTCCCTCTCGATACCCAGAG 60.159 54.545 0.00 0.00 36.63 3.35
2233 5232 2.366640 TCTTCCCTCTCGATACCCAG 57.633 55.000 0.00 0.00 0.00 4.45
2251 5250 4.051922 CCTTAGTGCACTAATCGGACATC 58.948 47.826 33.45 0.00 37.75 3.06
2252 5251 3.181465 CCCTTAGTGCACTAATCGGACAT 60.181 47.826 33.45 6.46 37.75 3.06
2259 5258 1.916181 ACCTGCCCTTAGTGCACTAAT 59.084 47.619 33.45 17.98 37.75 1.73
2262 5261 1.127567 TGACCTGCCCTTAGTGCACT 61.128 55.000 25.12 25.12 34.46 4.40
2266 5265 2.086869 CAACATGACCTGCCCTTAGTG 58.913 52.381 0.00 0.00 0.00 2.74
2268 5267 1.098050 GCAACATGACCTGCCCTTAG 58.902 55.000 0.00 0.00 32.18 2.18
2269 5268 0.698238 AGCAACATGACCTGCCCTTA 59.302 50.000 0.00 0.00 39.47 2.69
2273 5272 2.401766 CGGAGCAACATGACCTGCC 61.402 63.158 0.00 0.18 39.47 4.85
2276 5275 0.396435 TCAACGGAGCAACATGACCT 59.604 50.000 0.00 0.00 0.00 3.85
2290 5289 2.348591 GCGAGAAGTTTCAAGGTCAACG 60.349 50.000 0.00 0.00 0.00 4.10
2295 5294 0.249911 AGCGCGAGAAGTTTCAAGGT 60.250 50.000 12.10 0.00 0.00 3.50
2299 5298 0.313987 TGAGAGCGCGAGAAGTTTCA 59.686 50.000 12.10 0.00 0.00 2.69
2300 5299 1.419374 TTGAGAGCGCGAGAAGTTTC 58.581 50.000 12.10 0.00 0.00 2.78
2311 5310 0.813210 GATGGCCTCCTTTGAGAGCG 60.813 60.000 3.32 0.00 41.42 5.03
2338 5337 3.952508 TGCGAGGGTGTGGCATGT 61.953 61.111 0.00 0.00 34.49 3.21
2352 5351 3.874394 CGCGGATCGAAAAATGCG 58.126 55.556 0.00 6.52 42.57 4.73
2361 5361 0.179275 CGAATATTGCACGCGGATCG 60.179 55.000 12.47 4.46 45.38 3.69
2364 5364 0.101579 TCTCGAATATTGCACGCGGA 59.898 50.000 12.47 0.00 0.00 5.54
2402 5906 0.598065 GCAACTTCCGGCATGAAACT 59.402 50.000 0.00 0.00 0.00 2.66
2424 5929 2.629656 ATGTGCCGCCTTTGCAGAC 61.630 57.895 0.00 0.00 39.87 3.51
2427 5932 1.742324 TTTCATGTGCCGCCTTTGCA 61.742 50.000 0.00 0.00 37.32 4.08
2430 5935 1.255882 TGATTTCATGTGCCGCCTTT 58.744 45.000 0.00 0.00 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.