Multiple sequence alignment - TraesCS3D01G045500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G045500 chr3D 100.000 2456 0 0 1 2456 17393193 17390738 0.000000e+00 4536.0
1 TraesCS3D01G045500 chr3D 87.223 1127 97 22 646 1739 17592537 17591425 0.000000e+00 1240.0
2 TraesCS3D01G045500 chr3D 87.223 1127 97 22 646 1739 17602820 17603932 0.000000e+00 1240.0
3 TraesCS3D01G045500 chr3D 89.209 936 65 18 811 1739 17414103 17413197 0.000000e+00 1136.0
4 TraesCS3D01G045500 chr3D 87.144 1019 58 27 475 1461 17434207 17433230 0.000000e+00 1088.0
5 TraesCS3D01G045500 chr3D 84.564 1043 116 29 718 1746 17556195 17557206 0.000000e+00 992.0
6 TraesCS3D01G045500 chr3D 88.511 235 25 2 2101 2334 305497384 305497151 1.440000e-72 283.0
7 TraesCS3D01G045500 chr3A 85.884 2019 132 55 475 2452 19466551 19468457 0.000000e+00 2008.0
8 TraesCS3D01G045500 chr3A 89.248 958 68 10 808 1747 19329033 19328093 0.000000e+00 1166.0
9 TraesCS3D01G045500 chr3A 85.229 677 60 15 1100 1737 25925579 25926254 0.000000e+00 660.0
10 TraesCS3D01G045500 chr3A 86.364 594 44 18 1878 2452 19324707 19324132 4.490000e-172 614.0
11 TraesCS3D01G045500 chr3B 88.087 1511 112 35 569 2061 25057467 25056007 0.000000e+00 1731.0
12 TraesCS3D01G045500 chr3B 90.928 937 66 11 763 1687 25122420 25121491 0.000000e+00 1242.0
13 TraesCS3D01G045500 chr3B 89.046 283 25 4 1764 2040 25121457 25121175 1.810000e-91 346.0
14 TraesCS3D01G045500 chr3B 82.400 250 20 13 492 734 25122649 25122417 1.930000e-46 196.0
15 TraesCS3D01G045500 chrUn 86.597 1246 111 29 492 1722 37339264 37338060 0.000000e+00 1325.0
16 TraesCS3D01G045500 chrUn 86.597 1246 111 29 492 1722 237380396 237379192 0.000000e+00 1325.0
17 TraesCS3D01G045500 chrUn 85.986 1106 93 34 645 1722 38635753 38634682 0.000000e+00 1127.0
18 TraesCS3D01G045500 chrUn 91.589 107 4 4 1990 2094 291907873 291907770 2.550000e-30 143.0
19 TraesCS3D01G045500 chr5B 84.887 1105 116 27 661 1730 426652324 426651236 0.000000e+00 1068.0
20 TraesCS3D01G045500 chr2B 82.553 470 55 9 1 469 636759291 636759734 2.960000e-104 388.0
21 TraesCS3D01G045500 chr2B 88.936 235 23 2 2101 2333 401669186 401668953 1.110000e-73 287.0
22 TraesCS3D01G045500 chr7B 82.984 382 53 8 70 450 94809448 94809818 3.910000e-88 335.0
23 TraesCS3D01G045500 chr1B 90.295 237 20 2 2102 2336 442201869 442201634 8.530000e-80 307.0
24 TraesCS3D01G045500 chr2A 89.167 240 23 2 2096 2333 726564640 726564402 1.850000e-76 296.0
25 TraesCS3D01G045500 chr4A 89.076 238 22 3 2098 2333 733144508 733144743 2.390000e-75 292.0
26 TraesCS3D01G045500 chr4A 77.284 405 69 14 71 471 690131654 690131269 1.480000e-52 217.0
27 TraesCS3D01G045500 chr4B 88.462 234 24 3 2102 2333 22857385 22857617 1.860000e-71 279.0
28 TraesCS3D01G045500 chr7A 87.137 241 28 3 2096 2334 672041141 672041380 1.120000e-68 270.0
29 TraesCS3D01G045500 chr7A 94.872 39 0 2 129 166 206971869 206971832 2.640000e-05 60.2
30 TraesCS3D01G045500 chr1D 86.111 216 23 3 269 483 391288461 391288252 2.460000e-55 226.0
31 TraesCS3D01G045500 chr7D 94.872 39 0 2 129 166 197929750 197929713 2.640000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G045500 chr3D 17390738 17393193 2455 True 4536.000000 4536 100.000 1 2456 1 chr3D.!!$R1 2455
1 TraesCS3D01G045500 chr3D 17591425 17592537 1112 True 1240.000000 1240 87.223 646 1739 1 chr3D.!!$R4 1093
2 TraesCS3D01G045500 chr3D 17602820 17603932 1112 False 1240.000000 1240 87.223 646 1739 1 chr3D.!!$F2 1093
3 TraesCS3D01G045500 chr3D 17413197 17414103 906 True 1136.000000 1136 89.209 811 1739 1 chr3D.!!$R2 928
4 TraesCS3D01G045500 chr3D 17433230 17434207 977 True 1088.000000 1088 87.144 475 1461 1 chr3D.!!$R3 986
5 TraesCS3D01G045500 chr3D 17556195 17557206 1011 False 992.000000 992 84.564 718 1746 1 chr3D.!!$F1 1028
6 TraesCS3D01G045500 chr3A 19466551 19468457 1906 False 2008.000000 2008 85.884 475 2452 1 chr3A.!!$F1 1977
7 TraesCS3D01G045500 chr3A 19324132 19329033 4901 True 890.000000 1166 87.806 808 2452 2 chr3A.!!$R1 1644
8 TraesCS3D01G045500 chr3A 25925579 25926254 675 False 660.000000 660 85.229 1100 1737 1 chr3A.!!$F2 637
9 TraesCS3D01G045500 chr3B 25056007 25057467 1460 True 1731.000000 1731 88.087 569 2061 1 chr3B.!!$R1 1492
10 TraesCS3D01G045500 chr3B 25121175 25122649 1474 True 594.666667 1242 87.458 492 2040 3 chr3B.!!$R2 1548
11 TraesCS3D01G045500 chrUn 37338060 37339264 1204 True 1325.000000 1325 86.597 492 1722 1 chrUn.!!$R1 1230
12 TraesCS3D01G045500 chrUn 237379192 237380396 1204 True 1325.000000 1325 86.597 492 1722 1 chrUn.!!$R3 1230
13 TraesCS3D01G045500 chrUn 38634682 38635753 1071 True 1127.000000 1127 85.986 645 1722 1 chrUn.!!$R2 1077
14 TraesCS3D01G045500 chr5B 426651236 426652324 1088 True 1068.000000 1068 84.887 661 1730 1 chr5B.!!$R1 1069

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
418 419 0.041576 CGTCGTATCGGCTTCATCGA 60.042 55.0 0.0 0.0 41.04 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2417 5921 0.178978 GATGATGGGGGAGAAAGGCC 60.179 60.0 0.0 0.0 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.899052 ACATGCAAATGGAATTGGGAG 57.101 42.857 0.00 0.00 36.10 4.30
21 22 2.502538 ACATGCAAATGGAATTGGGAGG 59.497 45.455 0.00 0.00 35.36 4.30
22 23 0.903942 TGCAAATGGAATTGGGAGGC 59.096 50.000 0.00 0.00 36.10 4.70
23 24 0.903942 GCAAATGGAATTGGGAGGCA 59.096 50.000 0.00 0.00 36.10 4.75
24 25 1.487558 GCAAATGGAATTGGGAGGCAT 59.512 47.619 0.00 0.00 36.10 4.40
25 26 2.699846 GCAAATGGAATTGGGAGGCATA 59.300 45.455 0.00 0.00 36.10 3.14
26 27 3.325716 GCAAATGGAATTGGGAGGCATAT 59.674 43.478 0.00 0.00 36.10 1.78
27 28 4.562143 GCAAATGGAATTGGGAGGCATATC 60.562 45.833 0.00 0.00 36.10 1.63
28 29 2.978156 TGGAATTGGGAGGCATATCC 57.022 50.000 0.00 0.00 38.76 2.59
29 30 2.142756 TGGAATTGGGAGGCATATCCA 58.857 47.619 4.47 0.00 41.52 3.41
30 31 2.723563 TGGAATTGGGAGGCATATCCAT 59.276 45.455 4.47 0.00 41.52 3.41
31 32 3.094572 GGAATTGGGAGGCATATCCATG 58.905 50.000 4.47 0.00 41.52 3.66
32 33 3.245371 GGAATTGGGAGGCATATCCATGA 60.245 47.826 0.00 0.00 41.52 3.07
33 34 2.957402 TTGGGAGGCATATCCATGAC 57.043 50.000 0.00 0.00 41.52 3.06
34 35 0.686789 TGGGAGGCATATCCATGACG 59.313 55.000 0.00 0.00 45.73 4.35
35 36 0.687354 GGGAGGCATATCCATGACGT 59.313 55.000 0.00 0.00 45.73 4.34
36 37 1.899814 GGGAGGCATATCCATGACGTA 59.100 52.381 0.00 0.00 45.73 3.57
37 38 2.501723 GGGAGGCATATCCATGACGTAT 59.498 50.000 0.00 0.00 45.73 3.06
38 39 3.704566 GGGAGGCATATCCATGACGTATA 59.295 47.826 0.00 0.00 45.73 1.47
39 40 4.161565 GGGAGGCATATCCATGACGTATAA 59.838 45.833 0.00 0.00 45.73 0.98
40 41 5.352284 GGAGGCATATCCATGACGTATAAG 58.648 45.833 0.00 0.00 45.73 1.73
41 42 5.127194 GGAGGCATATCCATGACGTATAAGA 59.873 44.000 0.00 0.00 45.73 2.10
42 43 6.183360 GGAGGCATATCCATGACGTATAAGAT 60.183 42.308 0.00 0.00 45.73 2.40
43 44 6.577103 AGGCATATCCATGACGTATAAGATG 58.423 40.000 0.00 0.00 45.73 2.90
44 45 5.235186 GGCATATCCATGACGTATAAGATGC 59.765 44.000 0.00 0.00 33.67 3.91
45 46 5.812127 GCATATCCATGACGTATAAGATGCA 59.188 40.000 0.00 0.00 33.67 3.96
46 47 6.313658 GCATATCCATGACGTATAAGATGCAA 59.686 38.462 0.00 0.00 33.67 4.08
47 48 7.148423 GCATATCCATGACGTATAAGATGCAAA 60.148 37.037 0.00 0.00 33.67 3.68
48 49 8.720562 CATATCCATGACGTATAAGATGCAAAA 58.279 33.333 0.00 0.00 33.67 2.44
49 50 6.993786 TCCATGACGTATAAGATGCAAAAA 57.006 33.333 0.00 0.00 0.00 1.94
50 51 7.566760 TCCATGACGTATAAGATGCAAAAAT 57.433 32.000 0.00 0.00 0.00 1.82
51 52 8.669946 TCCATGACGTATAAGATGCAAAAATA 57.330 30.769 0.00 0.00 0.00 1.40
52 53 9.114952 TCCATGACGTATAAGATGCAAAAATAA 57.885 29.630 0.00 0.00 0.00 1.40
53 54 9.729023 CCATGACGTATAAGATGCAAAAATAAA 57.271 29.630 0.00 0.00 0.00 1.40
86 87 9.507280 AATCACTTCAAAAATATATTGAGCGTG 57.493 29.630 17.94 17.94 39.17 5.34
87 88 8.039603 TCACTTCAAAAATATATTGAGCGTGT 57.960 30.769 20.29 11.19 39.03 4.49
88 89 8.511321 TCACTTCAAAAATATATTGAGCGTGTT 58.489 29.630 20.29 0.00 39.03 3.32
89 90 9.128107 CACTTCAAAAATATATTGAGCGTGTTT 57.872 29.630 16.94 0.00 38.01 2.83
90 91 9.128107 ACTTCAAAAATATATTGAGCGTGTTTG 57.872 29.630 0.00 4.75 38.01 2.93
91 92 8.459521 TTCAAAAATATATTGAGCGTGTTTGG 57.540 30.769 12.96 0.00 38.01 3.28
92 93 7.598278 TCAAAAATATATTGAGCGTGTTTGGT 58.402 30.769 12.96 0.00 33.15 3.67
93 94 7.753132 TCAAAAATATATTGAGCGTGTTTGGTC 59.247 33.333 12.96 0.00 33.15 4.02
94 95 7.391148 AAAATATATTGAGCGTGTTTGGTCT 57.609 32.000 0.00 0.00 37.28 3.85
95 96 8.500753 AAAATATATTGAGCGTGTTTGGTCTA 57.499 30.769 0.00 0.00 37.28 2.59
96 97 7.715265 AATATATTGAGCGTGTTTGGTCTAG 57.285 36.000 0.00 0.00 37.28 2.43
97 98 3.678056 ATTGAGCGTGTTTGGTCTAGA 57.322 42.857 0.00 0.00 37.28 2.43
98 99 3.678056 TTGAGCGTGTTTGGTCTAGAT 57.322 42.857 0.00 0.00 37.28 1.98
99 100 4.794278 TTGAGCGTGTTTGGTCTAGATA 57.206 40.909 0.00 0.00 37.28 1.98
100 101 5.339008 TTGAGCGTGTTTGGTCTAGATAT 57.661 39.130 0.00 0.00 37.28 1.63
101 102 4.933330 TGAGCGTGTTTGGTCTAGATATC 58.067 43.478 0.00 0.00 37.28 1.63
102 103 4.645136 TGAGCGTGTTTGGTCTAGATATCT 59.355 41.667 10.73 10.73 37.28 1.98
103 104 5.127194 TGAGCGTGTTTGGTCTAGATATCTT 59.873 40.000 11.25 0.00 37.28 2.40
104 105 5.978814 AGCGTGTTTGGTCTAGATATCTTT 58.021 37.500 11.25 0.00 0.00 2.52
105 106 6.407202 AGCGTGTTTGGTCTAGATATCTTTT 58.593 36.000 11.25 0.00 0.00 2.27
106 107 6.535508 AGCGTGTTTGGTCTAGATATCTTTTC 59.464 38.462 11.25 1.73 0.00 2.29
107 108 6.535508 GCGTGTTTGGTCTAGATATCTTTTCT 59.464 38.462 11.25 0.00 0.00 2.52
108 109 7.464710 GCGTGTTTGGTCTAGATATCTTTTCTG 60.465 40.741 11.25 0.00 0.00 3.02
109 110 7.010552 CGTGTTTGGTCTAGATATCTTTTCTGG 59.989 40.741 11.25 0.00 0.00 3.86
110 111 6.823689 TGTTTGGTCTAGATATCTTTTCTGGC 59.176 38.462 11.25 0.00 0.00 4.85
111 112 6.814954 TTGGTCTAGATATCTTTTCTGGCT 57.185 37.500 11.25 0.00 0.00 4.75
112 113 7.914427 TTGGTCTAGATATCTTTTCTGGCTA 57.086 36.000 11.25 0.00 0.00 3.93
113 114 8.497910 TTGGTCTAGATATCTTTTCTGGCTAT 57.502 34.615 11.25 0.00 0.00 2.97
114 115 8.128322 TGGTCTAGATATCTTTTCTGGCTATC 57.872 38.462 11.25 0.00 0.00 2.08
115 116 7.730332 TGGTCTAGATATCTTTTCTGGCTATCA 59.270 37.037 11.25 0.00 0.00 2.15
116 117 8.757877 GGTCTAGATATCTTTTCTGGCTATCAT 58.242 37.037 11.25 0.00 0.00 2.45
121 122 9.447157 AGATATCTTTTCTGGCTATCATAAAGC 57.553 33.333 0.00 0.00 39.33 3.51
122 123 9.447157 GATATCTTTTCTGGCTATCATAAAGCT 57.553 33.333 0.00 0.00 39.97 3.74
125 126 9.804977 ATCTTTTCTGGCTATCATAAAGCTATT 57.195 29.630 0.00 0.00 39.97 1.73
126 127 9.060347 TCTTTTCTGGCTATCATAAAGCTATTG 57.940 33.333 0.00 0.00 39.97 1.90
127 128 8.752005 TTTTCTGGCTATCATAAAGCTATTGT 57.248 30.769 0.00 0.00 39.97 2.71
128 129 8.752005 TTTCTGGCTATCATAAAGCTATTGTT 57.248 30.769 0.00 0.00 39.97 2.83
129 130 7.969536 TCTGGCTATCATAAAGCTATTGTTC 57.030 36.000 0.00 0.00 39.97 3.18
130 131 7.739825 TCTGGCTATCATAAAGCTATTGTTCT 58.260 34.615 0.00 0.00 39.97 3.01
131 132 8.870116 TCTGGCTATCATAAAGCTATTGTTCTA 58.130 33.333 0.00 0.00 39.97 2.10
132 133 9.664332 CTGGCTATCATAAAGCTATTGTTCTAT 57.336 33.333 0.00 0.00 39.97 1.98
133 134 9.658799 TGGCTATCATAAAGCTATTGTTCTATC 57.341 33.333 0.00 0.00 39.97 2.08
134 135 9.883142 GGCTATCATAAAGCTATTGTTCTATCT 57.117 33.333 0.00 0.00 39.97 1.98
138 139 8.962884 TCATAAAGCTATTGTTCTATCTGCAA 57.037 30.769 0.00 0.00 0.00 4.08
139 140 9.394767 TCATAAAGCTATTGTTCTATCTGCAAA 57.605 29.630 0.00 0.00 0.00 3.68
140 141 9.661187 CATAAAGCTATTGTTCTATCTGCAAAG 57.339 33.333 0.00 0.00 0.00 2.77
141 142 7.928307 AAAGCTATTGTTCTATCTGCAAAGA 57.072 32.000 0.00 0.00 0.00 2.52
142 143 8.517062 AAAGCTATTGTTCTATCTGCAAAGAT 57.483 30.769 0.00 0.00 0.00 2.40
143 144 9.618890 AAAGCTATTGTTCTATCTGCAAAGATA 57.381 29.630 0.00 0.00 0.00 1.98
144 145 9.618890 AAGCTATTGTTCTATCTGCAAAGATAA 57.381 29.630 0.00 0.00 31.24 1.75
145 146 9.618890 AGCTATTGTTCTATCTGCAAAGATAAA 57.381 29.630 0.00 0.00 31.24 1.40
172 173 8.627208 ATGATTTATGGAAGTACATAGCCTTG 57.373 34.615 0.00 0.00 35.00 3.61
173 174 7.801104 TGATTTATGGAAGTACATAGCCTTGA 58.199 34.615 0.00 0.00 35.00 3.02
174 175 8.271458 TGATTTATGGAAGTACATAGCCTTGAA 58.729 33.333 0.00 0.00 35.00 2.69
175 176 9.289782 GATTTATGGAAGTACATAGCCTTGAAT 57.710 33.333 0.00 0.00 35.00 2.57
177 178 9.555727 TTTATGGAAGTACATAGCCTTGAATAC 57.444 33.333 0.00 0.00 35.00 1.89
178 179 6.553953 TGGAAGTACATAGCCTTGAATACA 57.446 37.500 0.00 0.00 0.00 2.29
179 180 6.953101 TGGAAGTACATAGCCTTGAATACAA 58.047 36.000 0.00 0.00 34.65 2.41
180 181 7.398829 TGGAAGTACATAGCCTTGAATACAAA 58.601 34.615 0.00 0.00 35.49 2.83
181 182 7.552687 TGGAAGTACATAGCCTTGAATACAAAG 59.447 37.037 0.00 0.00 35.49 2.77
182 183 7.553044 GGAAGTACATAGCCTTGAATACAAAGT 59.447 37.037 0.00 0.00 35.49 2.66
183 184 9.595823 GAAGTACATAGCCTTGAATACAAAGTA 57.404 33.333 0.00 0.00 35.49 2.24
184 185 9.953565 AAGTACATAGCCTTGAATACAAAGTAA 57.046 29.630 0.00 0.00 35.49 2.24
185 186 9.953565 AGTACATAGCCTTGAATACAAAGTAAA 57.046 29.630 0.00 0.00 35.49 2.01
188 189 9.297037 ACATAGCCTTGAATACAAAGTAAAAGT 57.703 29.630 0.00 0.00 35.49 2.66
189 190 9.559958 CATAGCCTTGAATACAAAGTAAAAGTG 57.440 33.333 0.00 0.00 35.49 3.16
190 191 7.817418 AGCCTTGAATACAAAGTAAAAGTGA 57.183 32.000 0.00 0.00 35.49 3.41
191 192 8.232913 AGCCTTGAATACAAAGTAAAAGTGAA 57.767 30.769 0.00 0.00 35.49 3.18
192 193 8.860088 AGCCTTGAATACAAAGTAAAAGTGAAT 58.140 29.630 0.00 0.00 35.49 2.57
193 194 8.915654 GCCTTGAATACAAAGTAAAAGTGAATG 58.084 33.333 0.00 0.00 35.49 2.67
202 203 9.878599 ACAAAGTAAAAGTGAATGATAGTTTCG 57.121 29.630 0.00 0.00 0.00 3.46
233 234 8.641498 AAAAAGAAATTAGGAGAGAATGAGCA 57.359 30.769 0.00 0.00 0.00 4.26
234 235 8.820153 AAAAGAAATTAGGAGAGAATGAGCAT 57.180 30.769 0.00 0.00 0.00 3.79
235 236 7.804843 AAGAAATTAGGAGAGAATGAGCATG 57.195 36.000 0.00 0.00 0.00 4.06
236 237 6.297582 AGAAATTAGGAGAGAATGAGCATGG 58.702 40.000 0.00 0.00 0.00 3.66
237 238 5.901413 AATTAGGAGAGAATGAGCATGGA 57.099 39.130 0.00 0.00 0.00 3.41
238 239 5.901413 ATTAGGAGAGAATGAGCATGGAA 57.099 39.130 0.00 0.00 0.00 3.53
239 240 3.842007 AGGAGAGAATGAGCATGGAAG 57.158 47.619 0.00 0.00 0.00 3.46
240 241 3.382278 AGGAGAGAATGAGCATGGAAGA 58.618 45.455 0.00 0.00 0.00 2.87
241 242 3.388676 AGGAGAGAATGAGCATGGAAGAG 59.611 47.826 0.00 0.00 0.00 2.85
242 243 3.134442 GGAGAGAATGAGCATGGAAGAGT 59.866 47.826 0.00 0.00 0.00 3.24
243 244 4.370917 GAGAGAATGAGCATGGAAGAGTC 58.629 47.826 0.00 0.00 0.00 3.36
244 245 4.032310 AGAGAATGAGCATGGAAGAGTCT 58.968 43.478 0.00 0.00 0.00 3.24
245 246 5.207354 AGAGAATGAGCATGGAAGAGTCTA 58.793 41.667 0.00 0.00 0.00 2.59
246 247 5.302568 AGAGAATGAGCATGGAAGAGTCTAG 59.697 44.000 0.00 0.00 0.00 2.43
247 248 5.207354 AGAATGAGCATGGAAGAGTCTAGA 58.793 41.667 0.00 0.00 0.00 2.43
248 249 5.660417 AGAATGAGCATGGAAGAGTCTAGAA 59.340 40.000 0.00 0.00 0.00 2.10
249 250 6.327104 AGAATGAGCATGGAAGAGTCTAGAAT 59.673 38.462 0.00 0.00 0.00 2.40
250 251 7.508636 AGAATGAGCATGGAAGAGTCTAGAATA 59.491 37.037 0.00 0.00 0.00 1.75
251 252 7.609097 ATGAGCATGGAAGAGTCTAGAATAA 57.391 36.000 0.00 0.00 0.00 1.40
252 253 7.423844 TGAGCATGGAAGAGTCTAGAATAAA 57.576 36.000 0.00 0.00 0.00 1.40
253 254 7.495901 TGAGCATGGAAGAGTCTAGAATAAAG 58.504 38.462 0.00 0.00 0.00 1.85
254 255 7.124901 TGAGCATGGAAGAGTCTAGAATAAAGT 59.875 37.037 0.00 0.00 0.00 2.66
255 256 8.540507 AGCATGGAAGAGTCTAGAATAAAGTA 57.459 34.615 0.00 0.00 0.00 2.24
256 257 8.637986 AGCATGGAAGAGTCTAGAATAAAGTAG 58.362 37.037 0.00 0.00 0.00 2.57
257 258 8.634444 GCATGGAAGAGTCTAGAATAAAGTAGA 58.366 37.037 0.00 0.00 0.00 2.59
260 261 8.688151 TGGAAGAGTCTAGAATAAAGTAGAAGC 58.312 37.037 0.00 0.00 0.00 3.86
261 262 8.139350 GGAAGAGTCTAGAATAAAGTAGAAGCC 58.861 40.741 0.00 0.00 0.00 4.35
262 263 8.832458 AAGAGTCTAGAATAAAGTAGAAGCCT 57.168 34.615 0.00 0.00 0.00 4.58
263 264 9.924010 AAGAGTCTAGAATAAAGTAGAAGCCTA 57.076 33.333 0.00 0.00 0.00 3.93
264 265 9.346005 AGAGTCTAGAATAAAGTAGAAGCCTAC 57.654 37.037 0.00 0.00 44.32 3.18
277 278 7.118422 GTAGAAGCCTACTACAAGTTTTGTG 57.882 40.000 4.78 0.00 41.08 3.33
278 279 4.515567 AGAAGCCTACTACAAGTTTTGTGC 59.484 41.667 4.78 0.00 45.03 4.57
279 280 2.806244 AGCCTACTACAAGTTTTGTGCG 59.194 45.455 4.78 0.00 45.03 5.34
280 281 2.803956 GCCTACTACAAGTTTTGTGCGA 59.196 45.455 4.78 0.00 45.03 5.10
281 282 3.249080 GCCTACTACAAGTTTTGTGCGAA 59.751 43.478 4.78 0.00 45.03 4.70
282 283 4.260866 GCCTACTACAAGTTTTGTGCGAAA 60.261 41.667 4.78 0.00 45.03 3.46
283 284 5.562113 GCCTACTACAAGTTTTGTGCGAAAT 60.562 40.000 4.78 0.00 45.03 2.17
284 285 5.851177 CCTACTACAAGTTTTGTGCGAAATG 59.149 40.000 4.78 0.00 45.03 2.32
285 286 5.243426 ACTACAAGTTTTGTGCGAAATGT 57.757 34.783 4.78 0.00 45.03 2.71
286 287 5.646606 ACTACAAGTTTTGTGCGAAATGTT 58.353 33.333 4.78 0.00 45.03 2.71
287 288 5.741982 ACTACAAGTTTTGTGCGAAATGTTC 59.258 36.000 4.78 0.00 45.03 3.18
288 289 4.489810 ACAAGTTTTGTGCGAAATGTTCA 58.510 34.783 0.00 0.00 43.48 3.18
289 290 5.108517 ACAAGTTTTGTGCGAAATGTTCAT 58.891 33.333 0.00 0.00 43.48 2.57
290 291 5.005586 ACAAGTTTTGTGCGAAATGTTCATG 59.994 36.000 0.00 0.00 43.48 3.07
291 292 4.681744 AGTTTTGTGCGAAATGTTCATGT 58.318 34.783 0.00 0.00 0.00 3.21
292 293 4.503734 AGTTTTGTGCGAAATGTTCATGTG 59.496 37.500 0.00 0.00 0.00 3.21
293 294 2.702898 TGTGCGAAATGTTCATGTGG 57.297 45.000 0.00 0.00 0.00 4.17
294 295 1.335780 TGTGCGAAATGTTCATGTGGC 60.336 47.619 3.57 3.57 0.00 5.01
295 296 1.068333 GTGCGAAATGTTCATGTGGCT 60.068 47.619 10.36 0.00 0.00 4.75
296 297 1.612950 TGCGAAATGTTCATGTGGCTT 59.387 42.857 10.36 0.00 0.00 4.35
297 298 2.816672 TGCGAAATGTTCATGTGGCTTA 59.183 40.909 10.36 0.00 0.00 3.09
298 299 3.254411 TGCGAAATGTTCATGTGGCTTAA 59.746 39.130 10.36 0.00 0.00 1.85
299 300 3.853671 GCGAAATGTTCATGTGGCTTAAG 59.146 43.478 0.00 0.00 0.00 1.85
300 301 4.414852 CGAAATGTTCATGTGGCTTAAGG 58.585 43.478 4.29 0.00 0.00 2.69
301 302 3.874392 AATGTTCATGTGGCTTAAGGC 57.126 42.857 21.52 21.52 41.50 4.35
314 315 4.837896 GCTTAAGGCCAACCATAGAATC 57.162 45.455 5.01 0.00 39.06 2.52
315 316 4.464947 GCTTAAGGCCAACCATAGAATCT 58.535 43.478 5.01 0.00 39.06 2.40
316 317 4.889995 GCTTAAGGCCAACCATAGAATCTT 59.110 41.667 5.01 0.00 39.06 2.40
317 318 5.009110 GCTTAAGGCCAACCATAGAATCTTC 59.991 44.000 5.01 0.00 39.06 2.87
318 319 4.870021 AAGGCCAACCATAGAATCTTCT 57.130 40.909 5.01 0.00 38.84 2.85
319 320 5.975988 AAGGCCAACCATAGAATCTTCTA 57.024 39.130 5.01 2.32 43.35 2.10
320 321 5.975988 AGGCCAACCATAGAATCTTCTAA 57.024 39.130 5.01 0.00 42.55 2.10
321 322 6.327386 AGGCCAACCATAGAATCTTCTAAA 57.673 37.500 5.01 0.00 42.55 1.85
322 323 6.915786 AGGCCAACCATAGAATCTTCTAAAT 58.084 36.000 5.01 0.00 42.55 1.40
323 324 8.045720 AGGCCAACCATAGAATCTTCTAAATA 57.954 34.615 5.01 0.00 42.55 1.40
324 325 8.160106 AGGCCAACCATAGAATCTTCTAAATAG 58.840 37.037 5.01 0.00 42.55 1.73
325 326 7.939588 GGCCAACCATAGAATCTTCTAAATAGT 59.060 37.037 0.00 0.00 42.55 2.12
326 327 9.998106 GCCAACCATAGAATCTTCTAAATAGTA 57.002 33.333 3.90 0.00 42.55 1.82
345 346 8.728337 AATAGTACACGTACAGAATCTAGTGA 57.272 34.615 9.85 0.00 38.48 3.41
346 347 8.728337 ATAGTACACGTACAGAATCTAGTGAA 57.272 34.615 9.85 0.13 38.48 3.18
347 348 7.074507 AGTACACGTACAGAATCTAGTGAAG 57.925 40.000 9.85 1.09 38.48 3.02
348 349 4.734917 ACACGTACAGAATCTAGTGAAGC 58.265 43.478 12.00 0.00 34.16 3.86
349 350 4.217767 ACACGTACAGAATCTAGTGAAGCA 59.782 41.667 12.00 0.00 34.16 3.91
350 351 5.161358 CACGTACAGAATCTAGTGAAGCAA 58.839 41.667 0.00 0.00 0.00 3.91
351 352 5.807520 CACGTACAGAATCTAGTGAAGCAAT 59.192 40.000 0.00 0.00 0.00 3.56
352 353 5.807520 ACGTACAGAATCTAGTGAAGCAATG 59.192 40.000 0.00 0.00 0.00 2.82
353 354 6.036470 CGTACAGAATCTAGTGAAGCAATGA 58.964 40.000 0.00 0.00 0.00 2.57
354 355 6.531594 CGTACAGAATCTAGTGAAGCAATGAA 59.468 38.462 0.00 0.00 0.00 2.57
355 356 7.063426 CGTACAGAATCTAGTGAAGCAATGAAA 59.937 37.037 0.00 0.00 0.00 2.69
356 357 7.750229 ACAGAATCTAGTGAAGCAATGAAAA 57.250 32.000 0.00 0.00 0.00 2.29
357 358 7.814642 ACAGAATCTAGTGAAGCAATGAAAAG 58.185 34.615 0.00 0.00 0.00 2.27
358 359 7.663081 ACAGAATCTAGTGAAGCAATGAAAAGA 59.337 33.333 0.00 0.00 0.00 2.52
359 360 8.675504 CAGAATCTAGTGAAGCAATGAAAAGAT 58.324 33.333 0.00 0.00 0.00 2.40
360 361 8.891720 AGAATCTAGTGAAGCAATGAAAAGATC 58.108 33.333 0.00 0.00 0.00 2.75
361 362 6.992063 TCTAGTGAAGCAATGAAAAGATCC 57.008 37.500 0.00 0.00 0.00 3.36
362 363 6.475504 TCTAGTGAAGCAATGAAAAGATCCA 58.524 36.000 0.00 0.00 0.00 3.41
363 364 6.942005 TCTAGTGAAGCAATGAAAAGATCCAA 59.058 34.615 0.00 0.00 0.00 3.53
364 365 5.776744 AGTGAAGCAATGAAAAGATCCAAC 58.223 37.500 0.00 0.00 0.00 3.77
365 366 5.302568 AGTGAAGCAATGAAAAGATCCAACA 59.697 36.000 0.00 0.00 0.00 3.33
366 367 5.632347 GTGAAGCAATGAAAAGATCCAACAG 59.368 40.000 0.00 0.00 0.00 3.16
367 368 4.796038 AGCAATGAAAAGATCCAACAGG 57.204 40.909 0.00 0.00 0.00 4.00
368 369 4.154942 AGCAATGAAAAGATCCAACAGGT 58.845 39.130 0.00 0.00 0.00 4.00
369 370 4.219288 AGCAATGAAAAGATCCAACAGGTC 59.781 41.667 0.00 0.00 0.00 3.85
370 371 4.022068 GCAATGAAAAGATCCAACAGGTCA 60.022 41.667 0.00 0.00 0.00 4.02
371 372 5.706916 CAATGAAAAGATCCAACAGGTCAG 58.293 41.667 0.00 0.00 0.00 3.51
372 373 3.149196 TGAAAAGATCCAACAGGTCAGC 58.851 45.455 0.00 0.00 0.00 4.26
373 374 2.957402 AAAGATCCAACAGGTCAGCA 57.043 45.000 0.00 0.00 0.00 4.41
374 375 2.957402 AAGATCCAACAGGTCAGCAA 57.043 45.000 0.00 0.00 0.00 3.91
375 376 2.191128 AGATCCAACAGGTCAGCAAC 57.809 50.000 0.00 0.00 0.00 4.17
376 377 1.421268 AGATCCAACAGGTCAGCAACA 59.579 47.619 0.00 0.00 0.00 3.33
377 378 1.537202 GATCCAACAGGTCAGCAACAC 59.463 52.381 0.00 0.00 0.00 3.32
378 379 0.546122 TCCAACAGGTCAGCAACACT 59.454 50.000 0.00 0.00 0.00 3.55
379 380 0.947244 CCAACAGGTCAGCAACACTC 59.053 55.000 0.00 0.00 0.00 3.51
380 381 0.583438 CAACAGGTCAGCAACACTCG 59.417 55.000 0.00 0.00 0.00 4.18
381 382 0.464036 AACAGGTCAGCAACACTCGA 59.536 50.000 0.00 0.00 0.00 4.04
382 383 0.464036 ACAGGTCAGCAACACTCGAA 59.536 50.000 0.00 0.00 0.00 3.71
383 384 1.070758 ACAGGTCAGCAACACTCGAAT 59.929 47.619 0.00 0.00 0.00 3.34
384 385 2.146342 CAGGTCAGCAACACTCGAATT 58.854 47.619 0.00 0.00 0.00 2.17
385 386 2.549754 CAGGTCAGCAACACTCGAATTT 59.450 45.455 0.00 0.00 0.00 1.82
386 387 2.549754 AGGTCAGCAACACTCGAATTTG 59.450 45.455 0.00 0.00 0.00 2.32
387 388 2.310577 GTCAGCAACACTCGAATTTGC 58.689 47.619 14.45 14.45 44.93 3.68
388 389 1.266718 TCAGCAACACTCGAATTTGCC 59.733 47.619 17.28 4.90 45.58 4.52
389 390 1.001487 CAGCAACACTCGAATTTGCCA 60.001 47.619 17.28 0.00 45.58 4.92
390 391 1.888512 AGCAACACTCGAATTTGCCAT 59.111 42.857 17.28 2.71 45.58 4.40
391 392 1.987770 GCAACACTCGAATTTGCCATG 59.012 47.619 12.20 0.00 39.82 3.66
392 393 2.607771 GCAACACTCGAATTTGCCATGT 60.608 45.455 12.20 0.00 39.82 3.21
393 394 3.641648 CAACACTCGAATTTGCCATGTT 58.358 40.909 0.00 4.20 0.00 2.71
394 395 4.050553 CAACACTCGAATTTGCCATGTTT 58.949 39.130 6.39 0.00 0.00 2.83
395 396 4.320608 ACACTCGAATTTGCCATGTTTT 57.679 36.364 0.00 0.00 0.00 2.43
396 397 4.692228 ACACTCGAATTTGCCATGTTTTT 58.308 34.783 0.00 0.00 0.00 1.94
397 398 5.837437 ACACTCGAATTTGCCATGTTTTTA 58.163 33.333 0.00 0.00 0.00 1.52
398 399 5.689961 ACACTCGAATTTGCCATGTTTTTAC 59.310 36.000 0.00 0.00 0.00 2.01
399 400 5.118510 CACTCGAATTTGCCATGTTTTTACC 59.881 40.000 0.00 0.00 0.00 2.85
400 401 4.230657 TCGAATTTGCCATGTTTTTACCG 58.769 39.130 0.00 0.00 0.00 4.02
401 402 3.984633 CGAATTTGCCATGTTTTTACCGT 59.015 39.130 0.00 0.00 0.00 4.83
402 403 4.089351 CGAATTTGCCATGTTTTTACCGTC 59.911 41.667 0.00 0.00 0.00 4.79
403 404 2.690173 TTGCCATGTTTTTACCGTCG 57.310 45.000 0.00 0.00 0.00 5.12
404 405 1.595466 TGCCATGTTTTTACCGTCGT 58.405 45.000 0.00 0.00 0.00 4.34
405 406 2.763933 TGCCATGTTTTTACCGTCGTA 58.236 42.857 0.00 0.00 0.00 3.43
406 407 3.336468 TGCCATGTTTTTACCGTCGTAT 58.664 40.909 0.00 0.00 0.00 3.06
407 408 3.371591 TGCCATGTTTTTACCGTCGTATC 59.628 43.478 0.00 0.00 0.00 2.24
408 409 3.542680 GCCATGTTTTTACCGTCGTATCG 60.543 47.826 0.00 0.00 0.00 2.92
416 417 2.797515 CCGTCGTATCGGCTTCATC 58.202 57.895 4.00 0.00 43.96 2.92
417 418 0.997226 CCGTCGTATCGGCTTCATCG 60.997 60.000 4.00 0.00 43.96 3.84
418 419 0.041576 CGTCGTATCGGCTTCATCGA 60.042 55.000 0.00 0.00 41.04 3.59
419 420 1.596220 CGTCGTATCGGCTTCATCGAA 60.596 52.381 0.00 0.00 40.15 3.71
420 421 2.662700 GTCGTATCGGCTTCATCGAAT 58.337 47.619 0.00 0.00 40.15 3.34
421 422 2.657372 GTCGTATCGGCTTCATCGAATC 59.343 50.000 0.00 0.00 40.15 2.52
422 423 1.986378 CGTATCGGCTTCATCGAATCC 59.014 52.381 0.00 0.00 40.15 3.01
423 424 2.607038 CGTATCGGCTTCATCGAATCCA 60.607 50.000 0.00 0.00 40.15 3.41
424 425 2.620251 ATCGGCTTCATCGAATCCAA 57.380 45.000 0.00 0.00 40.15 3.53
425 426 2.620251 TCGGCTTCATCGAATCCAAT 57.380 45.000 0.00 0.00 33.42 3.16
426 427 2.212652 TCGGCTTCATCGAATCCAATG 58.787 47.619 0.00 0.00 33.42 2.82
427 428 2.158971 TCGGCTTCATCGAATCCAATGA 60.159 45.455 0.00 0.00 33.42 2.57
428 429 2.810274 CGGCTTCATCGAATCCAATGAT 59.190 45.455 0.00 0.00 32.24 2.45
429 430 3.251729 CGGCTTCATCGAATCCAATGATT 59.748 43.478 0.00 0.00 43.91 2.57
430 431 4.543692 GGCTTCATCGAATCCAATGATTG 58.456 43.478 0.00 0.00 41.30 2.67
431 432 4.037208 GGCTTCATCGAATCCAATGATTGT 59.963 41.667 4.27 0.00 41.30 2.71
432 433 5.450965 GGCTTCATCGAATCCAATGATTGTT 60.451 40.000 4.27 0.00 41.30 2.83
433 434 6.238731 GGCTTCATCGAATCCAATGATTGTTA 60.239 38.462 4.27 0.00 41.30 2.41
434 435 7.365741 GCTTCATCGAATCCAATGATTGTTAT 58.634 34.615 4.27 0.00 41.30 1.89
435 436 7.864379 GCTTCATCGAATCCAATGATTGTTATT 59.136 33.333 4.27 3.84 41.30 1.40
436 437 9.390795 CTTCATCGAATCCAATGATTGTTATTC 57.609 33.333 15.20 15.20 41.30 1.75
437 438 7.874940 TCATCGAATCCAATGATTGTTATTCC 58.125 34.615 17.56 7.07 41.30 3.01
438 439 7.501892 TCATCGAATCCAATGATTGTTATTCCA 59.498 33.333 17.56 10.45 41.30 3.53
439 440 7.637631 TCGAATCCAATGATTGTTATTCCAA 57.362 32.000 17.56 8.96 41.30 3.53
440 441 7.706159 TCGAATCCAATGATTGTTATTCCAAG 58.294 34.615 17.56 9.35 41.30 3.61
441 442 7.339212 TCGAATCCAATGATTGTTATTCCAAGT 59.661 33.333 17.56 0.00 41.30 3.16
442 443 7.975616 CGAATCCAATGATTGTTATTCCAAGTT 59.024 33.333 17.56 0.00 41.30 2.66
447 448 9.236691 CCAATGATTGTTATTCCAAGTTATTCG 57.763 33.333 4.27 0.00 0.00 3.34
448 449 9.787532 CAATGATTGTTATTCCAAGTTATTCGT 57.212 29.630 0.00 0.00 0.00 3.85
451 452 9.438228 TGATTGTTATTCCAAGTTATTCGTACA 57.562 29.630 0.00 0.00 0.00 2.90
532 533 4.264253 TCATAGCTTTGGTCTGTGATTGG 58.736 43.478 4.23 0.00 28.77 3.16
554 555 1.670380 GCTCTTCTCGGTTGGTCTCAC 60.670 57.143 0.00 0.00 0.00 3.51
556 557 0.388649 CTTCTCGGTTGGTCTCACCG 60.389 60.000 5.10 5.10 42.58 4.94
561 562 1.524863 CGGTTGGTCTCACCGTCTCT 61.525 60.000 3.27 0.00 42.58 3.10
563 564 0.674534 GTTGGTCTCACCGTCTCTGT 59.325 55.000 0.00 0.00 42.58 3.41
571 572 3.048602 CCGTCTCTGTTCCGGTGT 58.951 61.111 0.00 0.00 37.00 4.16
584 585 2.661566 CGGTGTGAGTCGCTTGCTG 61.662 63.158 5.11 0.00 0.00 4.41
649 655 0.684153 AAAGGCCCCATCACATTCCG 60.684 55.000 0.00 0.00 0.00 4.30
800 853 2.821810 GAGCCGAGCTGGAAAGCC 60.822 66.667 2.98 0.00 39.88 4.35
801 854 4.767255 AGCCGAGCTGGAAAGCCG 62.767 66.667 0.00 0.00 42.00 5.52
888 960 0.252375 TAAGTACCTGGCCTCCCGTT 60.252 55.000 3.32 0.00 0.00 4.44
898 978 2.124570 CTCCCGTTGCCCTCCATG 60.125 66.667 0.00 0.00 0.00 3.66
906 986 2.825836 GCCCTCCATGCCAACTCG 60.826 66.667 0.00 0.00 0.00 4.18
916 996 3.261580 CATGCCAACTCGAATCAGTGTA 58.738 45.455 0.00 0.00 0.00 2.90
1431 1542 1.079057 GGTCAAGAAGCCCGAGGTC 60.079 63.158 0.00 0.00 0.00 3.85
1466 1615 0.539986 TCCGGCTGAGTATTTGGGTC 59.460 55.000 0.00 0.00 0.00 4.46
1467 1616 0.251916 CCGGCTGAGTATTTGGGTCA 59.748 55.000 0.00 0.00 0.00 4.02
1468 1617 1.656652 CGGCTGAGTATTTGGGTCAG 58.343 55.000 0.00 0.00 40.66 3.51
1469 1618 1.207089 CGGCTGAGTATTTGGGTCAGA 59.793 52.381 2.77 0.00 40.21 3.27
1470 1619 2.739932 CGGCTGAGTATTTGGGTCAGAG 60.740 54.545 2.77 0.00 40.21 3.35
1471 1620 2.284190 GCTGAGTATTTGGGTCAGAGC 58.716 52.381 2.77 0.00 40.21 4.09
1472 1621 2.911484 CTGAGTATTTGGGTCAGAGCC 58.089 52.381 12.14 12.14 40.21 4.70
1473 1622 2.237143 CTGAGTATTTGGGTCAGAGCCA 59.763 50.000 17.89 17.89 45.25 4.75
1493 1642 1.134128 AGTCTGGTTCATGTGTGTGCA 60.134 47.619 0.00 0.00 0.00 4.57
1537 1694 4.570772 TGCTACAGTTGTGTCTTTGTTCTC 59.429 41.667 0.00 0.00 38.19 2.87
1556 1724 3.023949 GCCGAGTCTGGTGAGGCAT 62.024 63.158 0.00 0.00 46.48 4.40
1557 1725 1.599047 CCGAGTCTGGTGAGGCATT 59.401 57.895 0.00 0.00 0.00 3.56
1558 1726 0.036010 CCGAGTCTGGTGAGGCATTT 60.036 55.000 0.00 0.00 0.00 2.32
1590 1766 1.202359 TGCGTTTCTTTTCCCTGTTGC 60.202 47.619 0.00 0.00 0.00 4.17
1697 1898 4.760227 GCATACGCAAAATTTGACCATC 57.240 40.909 10.26 0.00 38.36 3.51
1744 2165 4.219288 ACAGGATCAAGAGAAAAACATGGC 59.781 41.667 0.00 0.00 0.00 4.40
1809 2230 3.526931 ACAGAATGGTCGATACACTGG 57.473 47.619 12.21 1.14 43.62 4.00
1837 2261 3.668447 TCTGTCTCACATTCAGCTTTCC 58.332 45.455 0.00 0.00 0.00 3.13
1842 2266 6.061441 TGTCTCACATTCAGCTTTCCTTAAA 58.939 36.000 0.00 0.00 0.00 1.52
1843 2267 6.545666 TGTCTCACATTCAGCTTTCCTTAAAA 59.454 34.615 0.00 0.00 0.00 1.52
1847 2271 6.321181 TCACATTCAGCTTTCCTTAAAAGTGT 59.679 34.615 0.00 0.00 45.23 3.55
1923 5392 8.091449 TCTATCTCACCTTCAGTTTTCTTTCTC 58.909 37.037 0.00 0.00 0.00 2.87
2028 5500 6.474819 TCACACATATTAACTCAAACGTGG 57.525 37.500 0.00 0.00 0.00 4.94
2096 5583 4.473922 GGGTTGGAAATCTACTACTCCCTT 59.526 45.833 0.00 0.00 0.00 3.95
2100 5587 5.759059 TGGAAATCTACTACTCCCTTCGTA 58.241 41.667 0.00 0.00 0.00 3.43
2102 5589 7.520798 TGGAAATCTACTACTCCCTTCGTATA 58.479 38.462 0.00 0.00 0.00 1.47
2104 5591 9.022884 GGAAATCTACTACTCCCTTCGTATATT 57.977 37.037 0.00 0.00 0.00 1.28
2123 5625 9.262472 CGTATATTTGCTTTAGTCAAAGTCAAC 57.738 33.333 0.00 0.00 42.71 3.18
2137 5639 9.403583 AGTCAAAGTCAACCTTTATAAACTTCA 57.596 29.630 0.00 0.00 41.51 3.02
2417 5921 4.742201 CACCACTCGAGTGCCCCG 62.742 72.222 35.09 24.70 44.34 5.73
2432 5936 3.420482 CCGGCCTTTCTCCCCCAT 61.420 66.667 0.00 0.00 0.00 4.00
2434 5938 2.679342 CGGCCTTTCTCCCCCATCA 61.679 63.158 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.743838 GCCTCCCAATTCCATTTGCATG 60.744 50.000 0.00 0.00 0.00 4.06
2 3 1.487558 GCCTCCCAATTCCATTTGCAT 59.512 47.619 0.00 0.00 0.00 3.96
3 4 0.903942 GCCTCCCAATTCCATTTGCA 59.096 50.000 0.00 0.00 0.00 4.08
4 5 0.903942 TGCCTCCCAATTCCATTTGC 59.096 50.000 0.00 0.00 0.00 3.68
5 6 4.020839 GGATATGCCTCCCAATTCCATTTG 60.021 45.833 0.00 0.00 31.95 2.32
6 7 4.162651 GGATATGCCTCCCAATTCCATTT 58.837 43.478 0.00 0.00 31.95 2.32
7 8 3.142597 TGGATATGCCTCCCAATTCCATT 59.857 43.478 0.00 0.00 35.09 3.16
8 9 2.723563 TGGATATGCCTCCCAATTCCAT 59.276 45.455 0.00 0.00 35.09 3.41
9 10 2.142756 TGGATATGCCTCCCAATTCCA 58.857 47.619 0.00 0.00 36.66 3.53
10 11 2.978156 TGGATATGCCTCCCAATTCC 57.022 50.000 0.00 0.00 37.63 3.01
11 12 3.760684 GTCATGGATATGCCTCCCAATTC 59.239 47.826 0.00 0.00 37.63 2.17
12 13 3.771216 GTCATGGATATGCCTCCCAATT 58.229 45.455 0.00 0.00 37.63 2.32
13 14 2.290514 CGTCATGGATATGCCTCCCAAT 60.291 50.000 0.00 0.00 37.63 3.16
14 15 1.072173 CGTCATGGATATGCCTCCCAA 59.928 52.381 0.00 0.00 37.63 4.12
15 16 0.686789 CGTCATGGATATGCCTCCCA 59.313 55.000 0.00 0.00 37.63 4.37
16 17 0.687354 ACGTCATGGATATGCCTCCC 59.313 55.000 0.00 0.00 37.63 4.30
17 18 3.895232 ATACGTCATGGATATGCCTCC 57.105 47.619 0.00 0.00 37.63 4.30
18 19 6.208988 TCTTATACGTCATGGATATGCCTC 57.791 41.667 0.00 0.00 37.63 4.70
19 20 6.577103 CATCTTATACGTCATGGATATGCCT 58.423 40.000 0.00 0.00 37.63 4.75
20 21 5.235186 GCATCTTATACGTCATGGATATGCC 59.765 44.000 0.00 0.00 34.21 4.40
21 22 5.812127 TGCATCTTATACGTCATGGATATGC 59.188 40.000 0.00 1.14 34.21 3.14
22 23 7.832503 TTGCATCTTATACGTCATGGATATG 57.167 36.000 0.00 0.00 35.57 1.78
23 24 8.846943 TTTTGCATCTTATACGTCATGGATAT 57.153 30.769 0.00 0.00 0.00 1.63
24 25 8.669946 TTTTTGCATCTTATACGTCATGGATA 57.330 30.769 0.00 0.00 0.00 2.59
25 26 7.566760 TTTTTGCATCTTATACGTCATGGAT 57.433 32.000 0.00 0.00 0.00 3.41
26 27 6.993786 TTTTTGCATCTTATACGTCATGGA 57.006 33.333 0.00 0.00 0.00 3.41
27 28 9.729023 TTTATTTTTGCATCTTATACGTCATGG 57.271 29.630 0.00 0.00 0.00 3.66
60 61 9.507280 CACGCTCAATATATTTTTGAAGTGATT 57.493 29.630 18.81 0.00 40.46 2.57
61 62 8.677300 ACACGCTCAATATATTTTTGAAGTGAT 58.323 29.630 24.08 14.97 40.46 3.06
62 63 8.039603 ACACGCTCAATATATTTTTGAAGTGA 57.960 30.769 24.08 6.95 40.46 3.41
63 64 8.673626 AACACGCTCAATATATTTTTGAAGTG 57.326 30.769 20.23 20.23 41.93 3.16
64 65 9.128107 CAAACACGCTCAATATATTTTTGAAGT 57.872 29.630 9.45 2.04 32.98 3.01
65 66 8.586273 CCAAACACGCTCAATATATTTTTGAAG 58.414 33.333 14.07 4.26 32.98 3.02
66 67 8.085296 ACCAAACACGCTCAATATATTTTTGAA 58.915 29.630 14.07 0.00 32.98 2.69
67 68 7.598278 ACCAAACACGCTCAATATATTTTTGA 58.402 30.769 14.07 3.52 0.00 2.69
68 69 7.754924 AGACCAAACACGCTCAATATATTTTTG 59.245 33.333 0.00 2.91 0.00 2.44
69 70 7.826690 AGACCAAACACGCTCAATATATTTTT 58.173 30.769 0.00 0.00 0.00 1.94
70 71 7.391148 AGACCAAACACGCTCAATATATTTT 57.609 32.000 0.00 0.00 0.00 1.82
71 72 7.985184 TCTAGACCAAACACGCTCAATATATTT 59.015 33.333 0.00 0.00 0.00 1.40
72 73 7.497595 TCTAGACCAAACACGCTCAATATATT 58.502 34.615 0.00 0.00 0.00 1.28
73 74 7.050970 TCTAGACCAAACACGCTCAATATAT 57.949 36.000 0.00 0.00 0.00 0.86
74 75 6.459670 TCTAGACCAAACACGCTCAATATA 57.540 37.500 0.00 0.00 0.00 0.86
75 76 5.339008 TCTAGACCAAACACGCTCAATAT 57.661 39.130 0.00 0.00 0.00 1.28
76 77 4.794278 TCTAGACCAAACACGCTCAATA 57.206 40.909 0.00 0.00 0.00 1.90
77 78 3.678056 TCTAGACCAAACACGCTCAAT 57.322 42.857 0.00 0.00 0.00 2.57
78 79 3.678056 ATCTAGACCAAACACGCTCAA 57.322 42.857 0.00 0.00 0.00 3.02
79 80 4.645136 AGATATCTAGACCAAACACGCTCA 59.355 41.667 2.53 0.00 0.00 4.26
80 81 5.189659 AGATATCTAGACCAAACACGCTC 57.810 43.478 2.53 0.00 0.00 5.03
81 82 5.599999 AAGATATCTAGACCAAACACGCT 57.400 39.130 5.46 0.00 0.00 5.07
82 83 6.535508 AGAAAAGATATCTAGACCAAACACGC 59.464 38.462 5.46 0.00 0.00 5.34
83 84 7.010552 CCAGAAAAGATATCTAGACCAAACACG 59.989 40.741 5.46 0.00 0.00 4.49
84 85 7.201652 GCCAGAAAAGATATCTAGACCAAACAC 60.202 40.741 5.46 0.00 0.00 3.32
85 86 6.823689 GCCAGAAAAGATATCTAGACCAAACA 59.176 38.462 5.46 0.00 0.00 2.83
86 87 7.051000 AGCCAGAAAAGATATCTAGACCAAAC 58.949 38.462 5.46 0.00 0.00 2.93
87 88 7.200434 AGCCAGAAAAGATATCTAGACCAAA 57.800 36.000 5.46 0.00 0.00 3.28
88 89 6.814954 AGCCAGAAAAGATATCTAGACCAA 57.185 37.500 5.46 0.00 0.00 3.67
89 90 7.730332 TGATAGCCAGAAAAGATATCTAGACCA 59.270 37.037 5.46 0.00 0.00 4.02
90 91 8.128322 TGATAGCCAGAAAAGATATCTAGACC 57.872 38.462 5.46 0.00 0.00 3.85
95 96 9.447157 GCTTTATGATAGCCAGAAAAGATATCT 57.553 33.333 0.00 0.00 35.78 1.98
96 97 9.447157 AGCTTTATGATAGCCAGAAAAGATATC 57.553 33.333 0.00 0.00 39.47 1.63
99 100 9.804977 AATAGCTTTATGATAGCCAGAAAAGAT 57.195 29.630 0.00 0.00 39.47 2.40
100 101 9.060347 CAATAGCTTTATGATAGCCAGAAAAGA 57.940 33.333 0.00 0.00 39.47 2.52
101 102 8.844244 ACAATAGCTTTATGATAGCCAGAAAAG 58.156 33.333 0.00 0.00 39.47 2.27
102 103 8.752005 ACAATAGCTTTATGATAGCCAGAAAA 57.248 30.769 0.00 0.00 39.47 2.29
103 104 8.752005 AACAATAGCTTTATGATAGCCAGAAA 57.248 30.769 0.00 0.00 39.47 2.52
104 105 8.213679 AGAACAATAGCTTTATGATAGCCAGAA 58.786 33.333 0.00 0.00 39.47 3.02
105 106 7.739825 AGAACAATAGCTTTATGATAGCCAGA 58.260 34.615 0.00 0.00 39.47 3.86
106 107 7.976135 AGAACAATAGCTTTATGATAGCCAG 57.024 36.000 0.00 0.00 39.47 4.85
107 108 9.658799 GATAGAACAATAGCTTTATGATAGCCA 57.341 33.333 0.00 0.00 39.47 4.75
108 109 9.883142 AGATAGAACAATAGCTTTATGATAGCC 57.117 33.333 0.00 0.00 39.47 3.93
112 113 9.565090 TTGCAGATAGAACAATAGCTTTATGAT 57.435 29.630 0.00 0.00 0.00 2.45
113 114 8.962884 TTGCAGATAGAACAATAGCTTTATGA 57.037 30.769 0.00 0.00 0.00 2.15
114 115 9.661187 CTTTGCAGATAGAACAATAGCTTTATG 57.339 33.333 0.00 0.00 0.00 1.90
115 116 9.618890 TCTTTGCAGATAGAACAATAGCTTTAT 57.381 29.630 0.00 0.00 0.00 1.40
116 117 9.618890 ATCTTTGCAGATAGAACAATAGCTTTA 57.381 29.630 0.00 0.00 38.06 1.85
117 118 7.928307 TCTTTGCAGATAGAACAATAGCTTT 57.072 32.000 0.00 0.00 0.00 3.51
118 119 9.618890 TTATCTTTGCAGATAGAACAATAGCTT 57.381 29.630 0.00 0.00 42.04 3.74
119 120 9.618890 TTTATCTTTGCAGATAGAACAATAGCT 57.381 29.630 0.00 0.00 42.04 3.32
146 147 9.725019 CAAGGCTATGTACTTCCATAAATCATA 57.275 33.333 0.00 0.00 0.00 2.15
147 148 8.439971 TCAAGGCTATGTACTTCCATAAATCAT 58.560 33.333 0.00 0.00 0.00 2.45
148 149 7.801104 TCAAGGCTATGTACTTCCATAAATCA 58.199 34.615 0.00 0.00 0.00 2.57
149 150 8.677148 TTCAAGGCTATGTACTTCCATAAATC 57.323 34.615 0.00 0.00 0.00 2.17
151 152 9.555727 GTATTCAAGGCTATGTACTTCCATAAA 57.444 33.333 0.00 0.00 0.00 1.40
152 153 8.710239 TGTATTCAAGGCTATGTACTTCCATAA 58.290 33.333 0.00 0.00 0.00 1.90
153 154 8.257602 TGTATTCAAGGCTATGTACTTCCATA 57.742 34.615 0.00 0.00 0.00 2.74
154 155 7.136822 TGTATTCAAGGCTATGTACTTCCAT 57.863 36.000 0.00 0.00 0.00 3.41
155 156 6.553953 TGTATTCAAGGCTATGTACTTCCA 57.446 37.500 0.00 0.00 0.00 3.53
156 157 7.553044 ACTTTGTATTCAAGGCTATGTACTTCC 59.447 37.037 0.00 0.00 34.62 3.46
157 158 8.494016 ACTTTGTATTCAAGGCTATGTACTTC 57.506 34.615 0.00 0.00 34.62 3.01
158 159 9.953565 TTACTTTGTATTCAAGGCTATGTACTT 57.046 29.630 0.00 0.00 34.62 2.24
159 160 9.953565 TTTACTTTGTATTCAAGGCTATGTACT 57.046 29.630 0.00 0.00 34.62 2.73
162 163 9.297037 ACTTTTACTTTGTATTCAAGGCTATGT 57.703 29.630 0.00 0.00 34.62 2.29
163 164 9.559958 CACTTTTACTTTGTATTCAAGGCTATG 57.440 33.333 0.00 0.00 34.62 2.23
164 165 9.515226 TCACTTTTACTTTGTATTCAAGGCTAT 57.485 29.630 0.00 0.00 34.62 2.97
165 166 8.911918 TCACTTTTACTTTGTATTCAAGGCTA 57.088 30.769 0.00 0.00 34.62 3.93
166 167 7.817418 TCACTTTTACTTTGTATTCAAGGCT 57.183 32.000 0.00 0.00 34.62 4.58
167 168 8.915654 CATTCACTTTTACTTTGTATTCAAGGC 58.084 33.333 0.00 0.00 34.62 4.35
176 177 9.878599 CGAAACTATCATTCACTTTTACTTTGT 57.121 29.630 0.00 0.00 0.00 2.83
208 209 8.641498 TGCTCATTCTCTCCTAATTTCTTTTT 57.359 30.769 0.00 0.00 0.00 1.94
209 210 8.684520 CATGCTCATTCTCTCCTAATTTCTTTT 58.315 33.333 0.00 0.00 0.00 2.27
210 211 7.284944 CCATGCTCATTCTCTCCTAATTTCTTT 59.715 37.037 0.00 0.00 0.00 2.52
211 212 6.771749 CCATGCTCATTCTCTCCTAATTTCTT 59.228 38.462 0.00 0.00 0.00 2.52
212 213 6.100859 TCCATGCTCATTCTCTCCTAATTTCT 59.899 38.462 0.00 0.00 0.00 2.52
213 214 6.294473 TCCATGCTCATTCTCTCCTAATTTC 58.706 40.000 0.00 0.00 0.00 2.17
214 215 6.257994 TCCATGCTCATTCTCTCCTAATTT 57.742 37.500 0.00 0.00 0.00 1.82
215 216 5.901413 TCCATGCTCATTCTCTCCTAATT 57.099 39.130 0.00 0.00 0.00 1.40
216 217 5.605908 TCTTCCATGCTCATTCTCTCCTAAT 59.394 40.000 0.00 0.00 0.00 1.73
217 218 4.964897 TCTTCCATGCTCATTCTCTCCTAA 59.035 41.667 0.00 0.00 0.00 2.69
218 219 4.550669 TCTTCCATGCTCATTCTCTCCTA 58.449 43.478 0.00 0.00 0.00 2.94
219 220 3.382278 TCTTCCATGCTCATTCTCTCCT 58.618 45.455 0.00 0.00 0.00 3.69
220 221 3.134442 ACTCTTCCATGCTCATTCTCTCC 59.866 47.826 0.00 0.00 0.00 3.71
221 222 4.099881 AGACTCTTCCATGCTCATTCTCTC 59.900 45.833 0.00 0.00 0.00 3.20
222 223 4.032310 AGACTCTTCCATGCTCATTCTCT 58.968 43.478 0.00 0.00 0.00 3.10
223 224 4.405116 AGACTCTTCCATGCTCATTCTC 57.595 45.455 0.00 0.00 0.00 2.87
224 225 5.207354 TCTAGACTCTTCCATGCTCATTCT 58.793 41.667 0.00 0.00 0.00 2.40
225 226 5.528043 TCTAGACTCTTCCATGCTCATTC 57.472 43.478 0.00 0.00 0.00 2.67
226 227 5.946942 TTCTAGACTCTTCCATGCTCATT 57.053 39.130 0.00 0.00 0.00 2.57
227 228 7.609097 TTATTCTAGACTCTTCCATGCTCAT 57.391 36.000 0.00 0.00 0.00 2.90
228 229 7.124901 ACTTTATTCTAGACTCTTCCATGCTCA 59.875 37.037 0.00 0.00 0.00 4.26
229 230 7.496747 ACTTTATTCTAGACTCTTCCATGCTC 58.503 38.462 0.00 0.00 0.00 4.26
230 231 7.430760 ACTTTATTCTAGACTCTTCCATGCT 57.569 36.000 0.00 0.00 0.00 3.79
231 232 8.634444 TCTACTTTATTCTAGACTCTTCCATGC 58.366 37.037 0.00 0.00 0.00 4.06
234 235 8.688151 GCTTCTACTTTATTCTAGACTCTTCCA 58.312 37.037 0.00 0.00 0.00 3.53
235 236 8.139350 GGCTTCTACTTTATTCTAGACTCTTCC 58.861 40.741 0.00 0.00 0.00 3.46
236 237 8.909923 AGGCTTCTACTTTATTCTAGACTCTTC 58.090 37.037 0.00 0.00 0.00 2.87
237 238 8.832458 AGGCTTCTACTTTATTCTAGACTCTT 57.168 34.615 0.00 0.00 0.00 2.85
238 239 9.346005 GTAGGCTTCTACTTTATTCTAGACTCT 57.654 37.037 0.00 0.00 40.05 3.24
253 254 6.347483 GCACAAAACTTGTAGTAGGCTTCTAC 60.347 42.308 20.59 20.59 43.23 2.59
254 255 5.699458 GCACAAAACTTGTAGTAGGCTTCTA 59.301 40.000 0.00 0.00 43.23 2.10
255 256 4.515567 GCACAAAACTTGTAGTAGGCTTCT 59.484 41.667 0.00 0.00 43.23 2.85
256 257 4.610680 CGCACAAAACTTGTAGTAGGCTTC 60.611 45.833 0.00 0.00 43.23 3.86
257 258 3.250040 CGCACAAAACTTGTAGTAGGCTT 59.750 43.478 0.00 0.00 43.23 4.35
258 259 2.806244 CGCACAAAACTTGTAGTAGGCT 59.194 45.455 0.00 0.00 43.23 4.58
259 260 2.803956 TCGCACAAAACTTGTAGTAGGC 59.196 45.455 0.00 0.00 43.23 3.93
260 261 5.412526 TTTCGCACAAAACTTGTAGTAGG 57.587 39.130 0.00 0.00 43.23 3.18
261 262 6.427150 ACATTTCGCACAAAACTTGTAGTAG 58.573 36.000 0.00 0.00 43.23 2.57
262 263 6.366315 ACATTTCGCACAAAACTTGTAGTA 57.634 33.333 0.00 0.00 43.23 1.82
263 264 5.243426 ACATTTCGCACAAAACTTGTAGT 57.757 34.783 0.00 0.00 43.23 2.73
264 265 5.741510 TGAACATTTCGCACAAAACTTGTAG 59.258 36.000 0.00 0.00 43.23 2.74
265 266 5.641709 TGAACATTTCGCACAAAACTTGTA 58.358 33.333 0.00 0.00 43.23 2.41
266 267 4.489810 TGAACATTTCGCACAAAACTTGT 58.510 34.783 0.00 0.00 46.75 3.16
267 268 5.005586 ACATGAACATTTCGCACAAAACTTG 59.994 36.000 0.00 0.00 0.00 3.16
268 269 5.005586 CACATGAACATTTCGCACAAAACTT 59.994 36.000 0.00 0.00 0.00 2.66
269 270 4.503734 CACATGAACATTTCGCACAAAACT 59.496 37.500 0.00 0.00 0.00 2.66
270 271 4.317980 CCACATGAACATTTCGCACAAAAC 60.318 41.667 0.00 0.00 0.00 2.43
271 272 3.801050 CCACATGAACATTTCGCACAAAA 59.199 39.130 0.00 0.00 0.00 2.44
272 273 3.379240 CCACATGAACATTTCGCACAAA 58.621 40.909 0.00 0.00 0.00 2.83
273 274 2.861750 GCCACATGAACATTTCGCACAA 60.862 45.455 0.00 0.00 0.00 3.33
274 275 1.335780 GCCACATGAACATTTCGCACA 60.336 47.619 0.00 0.00 0.00 4.57
275 276 1.068333 AGCCACATGAACATTTCGCAC 60.068 47.619 0.00 0.00 0.00 5.34
276 277 1.246649 AGCCACATGAACATTTCGCA 58.753 45.000 0.00 0.00 0.00 5.10
277 278 2.352503 AAGCCACATGAACATTTCGC 57.647 45.000 0.00 0.00 0.00 4.70
278 279 4.414852 CCTTAAGCCACATGAACATTTCG 58.585 43.478 0.00 0.00 0.00 3.46
279 280 4.176271 GCCTTAAGCCACATGAACATTTC 58.824 43.478 0.00 0.00 34.35 2.17
280 281 4.192429 GCCTTAAGCCACATGAACATTT 57.808 40.909 0.00 0.00 34.35 2.32
281 282 3.874392 GCCTTAAGCCACATGAACATT 57.126 42.857 0.00 0.00 34.35 2.71
293 294 4.464947 AGATTCTATGGTTGGCCTTAAGC 58.535 43.478 3.32 0.29 42.60 3.09
294 295 6.360618 AGAAGATTCTATGGTTGGCCTTAAG 58.639 40.000 3.32 0.00 35.34 1.85
295 296 6.327386 AGAAGATTCTATGGTTGGCCTTAA 57.673 37.500 3.32 0.00 35.34 1.85
296 297 5.975988 AGAAGATTCTATGGTTGGCCTTA 57.024 39.130 3.32 0.00 35.34 2.69
297 298 4.870021 AGAAGATTCTATGGTTGGCCTT 57.130 40.909 3.32 0.00 35.34 4.35
298 299 5.975988 TTAGAAGATTCTATGGTTGGCCT 57.024 39.130 3.32 0.00 39.36 5.19
299 300 7.939588 ACTATTTAGAAGATTCTATGGTTGGCC 59.060 37.037 0.00 0.00 39.36 5.36
300 301 8.910351 ACTATTTAGAAGATTCTATGGTTGGC 57.090 34.615 3.25 0.00 39.36 4.52
319 320 9.170734 TCACTAGATTCTGTACGTGTACTATTT 57.829 33.333 11.14 1.86 37.00 1.40
320 321 8.728337 TCACTAGATTCTGTACGTGTACTATT 57.272 34.615 11.14 0.00 37.00 1.73
321 322 8.728337 TTCACTAGATTCTGTACGTGTACTAT 57.272 34.615 11.14 3.07 37.00 2.12
322 323 7.201591 GCTTCACTAGATTCTGTACGTGTACTA 60.202 40.741 11.14 0.00 37.00 1.82
323 324 6.403418 GCTTCACTAGATTCTGTACGTGTACT 60.403 42.308 11.14 0.00 37.00 2.73
324 325 5.738225 GCTTCACTAGATTCTGTACGTGTAC 59.262 44.000 0.00 3.21 36.63 2.90
325 326 5.413523 TGCTTCACTAGATTCTGTACGTGTA 59.586 40.000 0.00 0.00 0.00 2.90
326 327 4.217767 TGCTTCACTAGATTCTGTACGTGT 59.782 41.667 0.00 0.00 0.00 4.49
327 328 4.733850 TGCTTCACTAGATTCTGTACGTG 58.266 43.478 0.00 0.00 0.00 4.49
328 329 5.386958 TTGCTTCACTAGATTCTGTACGT 57.613 39.130 0.00 0.00 0.00 3.57
329 330 6.036470 TCATTGCTTCACTAGATTCTGTACG 58.964 40.000 0.00 0.00 0.00 3.67
330 331 7.834068 TTCATTGCTTCACTAGATTCTGTAC 57.166 36.000 0.00 0.00 0.00 2.90
331 332 8.846943 TTTTCATTGCTTCACTAGATTCTGTA 57.153 30.769 0.00 0.00 0.00 2.74
332 333 7.663081 TCTTTTCATTGCTTCACTAGATTCTGT 59.337 33.333 0.00 0.00 0.00 3.41
333 334 8.037382 TCTTTTCATTGCTTCACTAGATTCTG 57.963 34.615 0.00 0.00 0.00 3.02
334 335 8.804912 ATCTTTTCATTGCTTCACTAGATTCT 57.195 30.769 0.00 0.00 0.00 2.40
335 336 8.127954 GGATCTTTTCATTGCTTCACTAGATTC 58.872 37.037 0.00 0.00 0.00 2.52
336 337 7.613022 TGGATCTTTTCATTGCTTCACTAGATT 59.387 33.333 0.00 0.00 0.00 2.40
337 338 7.114754 TGGATCTTTTCATTGCTTCACTAGAT 58.885 34.615 0.00 0.00 0.00 1.98
338 339 6.475504 TGGATCTTTTCATTGCTTCACTAGA 58.524 36.000 0.00 0.00 0.00 2.43
339 340 6.748333 TGGATCTTTTCATTGCTTCACTAG 57.252 37.500 0.00 0.00 0.00 2.57
340 341 6.489700 TGTTGGATCTTTTCATTGCTTCACTA 59.510 34.615 0.00 0.00 0.00 2.74
341 342 5.302568 TGTTGGATCTTTTCATTGCTTCACT 59.697 36.000 0.00 0.00 0.00 3.41
342 343 5.531634 TGTTGGATCTTTTCATTGCTTCAC 58.468 37.500 0.00 0.00 0.00 3.18
343 344 5.279106 CCTGTTGGATCTTTTCATTGCTTCA 60.279 40.000 0.00 0.00 34.57 3.02
344 345 5.166398 CCTGTTGGATCTTTTCATTGCTTC 58.834 41.667 0.00 0.00 34.57 3.86
345 346 4.590222 ACCTGTTGGATCTTTTCATTGCTT 59.410 37.500 0.00 0.00 37.04 3.91
346 347 4.154942 ACCTGTTGGATCTTTTCATTGCT 58.845 39.130 0.00 0.00 37.04 3.91
347 348 4.022068 TGACCTGTTGGATCTTTTCATTGC 60.022 41.667 0.00 0.00 37.04 3.56
348 349 5.706916 CTGACCTGTTGGATCTTTTCATTG 58.293 41.667 0.00 0.00 37.04 2.82
349 350 4.219288 GCTGACCTGTTGGATCTTTTCATT 59.781 41.667 0.00 0.00 37.04 2.57
350 351 3.760684 GCTGACCTGTTGGATCTTTTCAT 59.239 43.478 0.00 0.00 37.04 2.57
351 352 3.149196 GCTGACCTGTTGGATCTTTTCA 58.851 45.455 0.00 0.00 37.04 2.69
352 353 3.149196 TGCTGACCTGTTGGATCTTTTC 58.851 45.455 0.00 0.00 37.04 2.29
353 354 3.228188 TGCTGACCTGTTGGATCTTTT 57.772 42.857 0.00 0.00 37.04 2.27
354 355 2.887152 GTTGCTGACCTGTTGGATCTTT 59.113 45.455 0.00 0.00 37.04 2.52
355 356 2.158623 TGTTGCTGACCTGTTGGATCTT 60.159 45.455 0.00 0.00 37.04 2.40
356 357 1.421268 TGTTGCTGACCTGTTGGATCT 59.579 47.619 0.00 0.00 37.04 2.75
357 358 1.537202 GTGTTGCTGACCTGTTGGATC 59.463 52.381 0.00 0.00 37.04 3.36
358 359 1.143684 AGTGTTGCTGACCTGTTGGAT 59.856 47.619 0.00 0.00 37.04 3.41
359 360 0.546122 AGTGTTGCTGACCTGTTGGA 59.454 50.000 0.00 0.00 37.04 3.53
360 361 0.947244 GAGTGTTGCTGACCTGTTGG 59.053 55.000 0.00 0.00 39.83 3.77
361 362 0.583438 CGAGTGTTGCTGACCTGTTG 59.417 55.000 0.00 0.00 0.00 3.33
362 363 0.464036 TCGAGTGTTGCTGACCTGTT 59.536 50.000 0.00 0.00 0.00 3.16
363 364 0.464036 TTCGAGTGTTGCTGACCTGT 59.536 50.000 0.00 0.00 0.00 4.00
364 365 1.800805 ATTCGAGTGTTGCTGACCTG 58.199 50.000 0.00 0.00 0.00 4.00
365 366 2.549754 CAAATTCGAGTGTTGCTGACCT 59.450 45.455 0.00 0.00 0.00 3.85
366 367 2.918131 GCAAATTCGAGTGTTGCTGACC 60.918 50.000 17.56 0.00 43.40 4.02
367 368 2.310577 GCAAATTCGAGTGTTGCTGAC 58.689 47.619 17.56 0.00 43.40 3.51
368 369 1.266718 GGCAAATTCGAGTGTTGCTGA 59.733 47.619 21.56 0.00 45.50 4.26
369 370 1.001487 TGGCAAATTCGAGTGTTGCTG 60.001 47.619 21.56 3.42 45.50 4.41
370 371 1.317613 TGGCAAATTCGAGTGTTGCT 58.682 45.000 21.56 0.00 45.50 3.91
371 372 1.987770 CATGGCAAATTCGAGTGTTGC 59.012 47.619 16.91 16.91 45.48 4.17
372 373 3.287312 ACATGGCAAATTCGAGTGTTG 57.713 42.857 0.00 0.00 0.00 3.33
373 374 4.320608 AAACATGGCAAATTCGAGTGTT 57.679 36.364 0.00 0.00 0.00 3.32
374 375 4.320608 AAAACATGGCAAATTCGAGTGT 57.679 36.364 0.00 0.00 0.00 3.55
375 376 5.118510 GGTAAAAACATGGCAAATTCGAGTG 59.881 40.000 0.00 0.00 0.00 3.51
376 377 5.227152 GGTAAAAACATGGCAAATTCGAGT 58.773 37.500 0.00 0.00 0.00 4.18
377 378 4.323336 CGGTAAAAACATGGCAAATTCGAG 59.677 41.667 0.00 0.00 0.00 4.04
378 379 4.230657 CGGTAAAAACATGGCAAATTCGA 58.769 39.130 0.00 0.00 0.00 3.71
379 380 3.984633 ACGGTAAAAACATGGCAAATTCG 59.015 39.130 0.00 0.00 0.00 3.34
380 381 4.089351 CGACGGTAAAAACATGGCAAATTC 59.911 41.667 0.00 0.00 0.00 2.17
381 382 3.984633 CGACGGTAAAAACATGGCAAATT 59.015 39.130 0.00 0.00 0.00 1.82
382 383 3.004944 ACGACGGTAAAAACATGGCAAAT 59.995 39.130 0.00 0.00 0.00 2.32
383 384 2.358267 ACGACGGTAAAAACATGGCAAA 59.642 40.909 0.00 0.00 0.00 3.68
384 385 1.948145 ACGACGGTAAAAACATGGCAA 59.052 42.857 0.00 0.00 0.00 4.52
385 386 1.595466 ACGACGGTAAAAACATGGCA 58.405 45.000 0.00 0.00 0.00 4.92
386 387 3.542680 CGATACGACGGTAAAAACATGGC 60.543 47.826 0.00 0.00 31.15 4.40
387 388 3.000523 CCGATACGACGGTAAAAACATGG 59.999 47.826 0.00 0.00 46.70 3.66
388 389 4.172796 CCGATACGACGGTAAAAACATG 57.827 45.455 0.00 0.00 46.70 3.21
399 400 0.041576 TCGATGAAGCCGATACGACG 60.042 55.000 0.00 0.00 0.00 5.12
400 401 2.115348 TTCGATGAAGCCGATACGAC 57.885 50.000 0.00 0.00 35.84 4.34
401 402 2.351447 GGATTCGATGAAGCCGATACGA 60.351 50.000 0.00 0.00 38.34 3.43
402 403 1.986378 GGATTCGATGAAGCCGATACG 59.014 52.381 0.00 0.00 38.34 3.06
408 409 4.037208 ACAATCATTGGATTCGATGAAGCC 59.963 41.667 8.06 6.88 46.89 4.35
409 410 5.179045 ACAATCATTGGATTCGATGAAGC 57.821 39.130 8.06 0.00 44.43 3.86
410 411 9.390795 GAATAACAATCATTGGATTCGATGAAG 57.609 33.333 8.06 6.73 44.43 3.02
411 412 8.352201 GGAATAACAATCATTGGATTCGATGAA 58.648 33.333 8.06 0.00 44.43 2.57
412 413 7.501892 TGGAATAACAATCATTGGATTCGATGA 59.498 33.333 6.37 6.37 45.10 2.92
413 414 7.650890 TGGAATAACAATCATTGGATTCGATG 58.349 34.615 15.75 0.00 41.78 3.84
414 415 7.822161 TGGAATAACAATCATTGGATTCGAT 57.178 32.000 15.75 0.00 41.78 3.59
415 416 7.339212 ACTTGGAATAACAATCATTGGATTCGA 59.661 33.333 15.75 11.80 41.78 3.71
416 417 7.483307 ACTTGGAATAACAATCATTGGATTCG 58.517 34.615 15.75 8.79 41.78 3.34
421 422 9.236691 CGAATAACTTGGAATAACAATCATTGG 57.763 33.333 1.58 0.00 34.12 3.16
422 423 9.787532 ACGAATAACTTGGAATAACAATCATTG 57.212 29.630 0.00 0.00 0.00 2.82
425 426 9.438228 TGTACGAATAACTTGGAATAACAATCA 57.562 29.630 0.00 0.00 0.00 2.57
496 497 6.293081 CCAAAGCTATGATCCAATTACACGAG 60.293 42.308 0.00 0.00 0.00 4.18
499 500 6.543831 AGACCAAAGCTATGATCCAATTACAC 59.456 38.462 0.00 0.00 0.00 2.90
512 513 3.019564 GCCAATCACAGACCAAAGCTAT 58.980 45.455 0.00 0.00 0.00 2.97
532 533 2.048127 ACCAACCGAGAAGAGCGC 60.048 61.111 0.00 0.00 0.00 5.92
556 557 0.674534 ACTCACACCGGAACAGAGAC 59.325 55.000 9.46 0.00 0.00 3.36
561 562 2.023414 AAGCGACTCACACCGGAACA 62.023 55.000 9.46 0.00 0.00 3.18
563 564 1.300620 CAAGCGACTCACACCGGAA 60.301 57.895 9.46 0.00 0.00 4.30
571 572 2.031012 CACCCAGCAAGCGACTCA 59.969 61.111 0.00 0.00 0.00 3.41
649 655 3.834799 CACCCCGGCGAGTACTCC 61.835 72.222 17.23 9.71 0.00 3.85
800 853 0.111266 CGAGCGTTTGGTTCTGTTCG 60.111 55.000 0.00 0.00 0.00 3.95
801 854 0.935196 ACGAGCGTTTGGTTCTGTTC 59.065 50.000 0.00 0.00 0.00 3.18
888 960 2.356278 GAGTTGGCATGGAGGGCA 59.644 61.111 0.00 0.00 42.10 5.36
898 978 3.424962 GCTTTACACTGATTCGAGTTGGC 60.425 47.826 0.00 0.00 0.00 4.52
906 986 7.169553 TGTGTGCTTTTGCTTTACACTGATTC 61.170 38.462 0.00 0.00 44.85 2.52
1431 1542 1.404717 CCGGATATCTCGATGGCCTTG 60.405 57.143 3.32 0.00 0.00 3.61
1466 1615 1.002888 ACATGAACCAGACTGGCTCTG 59.997 52.381 21.95 18.47 42.67 3.35
1467 1616 1.002888 CACATGAACCAGACTGGCTCT 59.997 52.381 21.95 6.22 42.67 4.09
1468 1617 1.271054 ACACATGAACCAGACTGGCTC 60.271 52.381 21.95 19.09 42.67 4.70
1469 1618 0.767375 ACACATGAACCAGACTGGCT 59.233 50.000 21.95 9.66 42.67 4.75
1470 1619 0.877071 CACACATGAACCAGACTGGC 59.123 55.000 21.95 6.79 42.67 4.85
1471 1620 1.875514 CACACACATGAACCAGACTGG 59.124 52.381 20.45 20.45 45.02 4.00
1472 1621 1.265095 GCACACACATGAACCAGACTG 59.735 52.381 0.00 0.00 0.00 3.51
1473 1622 1.134128 TGCACACACATGAACCAGACT 60.134 47.619 0.00 0.00 0.00 3.24
1474 1623 1.308047 TGCACACACATGAACCAGAC 58.692 50.000 0.00 0.00 0.00 3.51
1475 1624 1.948834 CTTGCACACACATGAACCAGA 59.051 47.619 0.00 0.00 0.00 3.86
1493 1642 4.156739 GCATACTTTTAGGCTGCAGAACTT 59.843 41.667 20.43 0.00 32.04 2.66
1537 1694 4.803426 GCCTCACCAGACTCGGCG 62.803 72.222 0.00 0.00 0.00 6.46
1556 1724 4.385825 AGAAACGCAATACAGAGACCAAA 58.614 39.130 0.00 0.00 0.00 3.28
1557 1725 4.002906 AGAAACGCAATACAGAGACCAA 57.997 40.909 0.00 0.00 0.00 3.67
1558 1726 3.678056 AGAAACGCAATACAGAGACCA 57.322 42.857 0.00 0.00 0.00 4.02
1590 1766 2.597305 GGCGATTACACAAGTACAGACG 59.403 50.000 0.00 0.00 0.00 4.18
1682 1875 4.687047 CGAAAACGATGGTCAAATTTTGC 58.313 39.130 4.19 0.39 0.00 3.68
1697 1898 1.109296 CCGAAACACAAGCGAAAACG 58.891 50.000 0.00 0.00 0.00 3.60
1744 2165 0.670162 CCTGTCAGTGGCCAAGTTTG 59.330 55.000 7.24 4.02 0.00 2.93
1790 2211 3.801114 TCCAGTGTATCGACCATTCTG 57.199 47.619 0.00 0.00 0.00 3.02
1797 2218 4.142359 ACAGAAGACATCCAGTGTATCGAC 60.142 45.833 0.00 0.00 42.36 4.20
1809 2230 4.329528 GCTGAATGTGAGACAGAAGACATC 59.670 45.833 0.00 0.00 34.07 3.06
1847 2271 4.017126 CAGGGTAGTGATCAGTGTAGACA 58.983 47.826 13.54 0.00 0.00 3.41
1862 2286 2.092212 ACATTCAGGGCATTCAGGGTAG 60.092 50.000 0.00 0.00 0.00 3.18
1923 5392 7.751768 AACTGAAGGTATTTCTCAAGAAAGG 57.248 36.000 10.65 0.00 45.87 3.11
2028 5500 8.388484 AGTTTGGACTTCATTAGATGATATGC 57.612 34.615 0.00 0.00 39.39 3.14
2096 5583 8.766000 TGACTTTGACTAAAGCAAATATACGA 57.234 30.769 0.00 0.00 45.72 3.43
2100 5587 8.409358 AGGTTGACTTTGACTAAAGCAAATAT 57.591 30.769 0.00 0.00 45.72 1.28
2102 5589 6.715347 AGGTTGACTTTGACTAAAGCAAAT 57.285 33.333 0.00 0.00 45.72 2.32
2306 5809 7.068061 ACTCCCTCCGTTCTTATTTACTCTAT 58.932 38.462 0.00 0.00 0.00 1.98
2308 5811 5.270794 ACTCCCTCCGTTCTTATTTACTCT 58.729 41.667 0.00 0.00 0.00 3.24
2319 5822 1.777941 ACTGGATACTCCCTCCGTTC 58.222 55.000 0.00 0.00 35.03 3.95
2345 5849 1.501604 AGGGGGCAGGTTTGTCTTAAA 59.498 47.619 0.00 0.00 0.00 1.52
2417 5921 0.178978 GATGATGGGGGAGAAAGGCC 60.179 60.000 0.00 0.00 0.00 5.19
2429 5933 0.374758 CTTTGTCGCGGTGATGATGG 59.625 55.000 6.13 0.00 0.00 3.51
2432 5936 2.032634 GGCTTTGTCGCGGTGATGA 61.033 57.895 6.13 0.00 0.00 2.92
2434 5938 2.746277 GGGCTTTGTCGCGGTGAT 60.746 61.111 6.13 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.