Multiple sequence alignment - TraesCS3D01G045300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G045300 chr3D 100.000 2699 0 0 1 2699 17372305 17375003 0.000000e+00 4985.0
1 TraesCS3D01G045300 chr3D 78.520 1811 239 69 982 2699 17646469 17644716 0.000000e+00 1051.0
2 TraesCS3D01G045300 chr3D 83.521 801 96 22 1931 2699 17516952 17516156 0.000000e+00 715.0
3 TraesCS3D01G045300 chr3D 82.011 567 79 14 1246 1812 11351526 11352069 6.810000e-126 460.0
4 TraesCS3D01G045300 chr3D 76.539 601 118 16 1070 1654 18949814 18950407 9.390000e-80 307.0
5 TraesCS3D01G045300 chr3D 77.465 142 19 10 672 807 17646831 17646697 3.730000e-09 73.1
6 TraesCS3D01G045300 chr3A 86.932 2510 208 52 255 2699 19476642 19474188 0.000000e+00 2708.0
7 TraesCS3D01G045300 chr3A 84.938 810 76 27 1931 2699 19371143 19371947 0.000000e+00 778.0
8 TraesCS3D01G045300 chr3A 84.641 599 86 6 2101 2693 26396035 26396633 2.310000e-165 592.0
9 TraesCS3D01G045300 chr3A 85.897 546 73 4 2156 2699 26469246 26469789 1.800000e-161 579.0
10 TraesCS3D01G045300 chr3A 85.267 543 57 13 1117 1658 19303440 19303960 3.060000e-149 538.0
11 TraesCS3D01G045300 chr3A 82.937 463 53 9 1382 1830 25937407 25936957 7.000000e-106 394.0
12 TraesCS3D01G045300 chr3A 79.245 583 90 19 1097 1661 26448361 26448930 7.050000e-101 377.0
13 TraesCS3D01G045300 chr3A 82.353 323 49 6 1338 1659 26419665 26419980 9.520000e-70 274.0
14 TraesCS3D01G045300 chr3A 84.034 119 11 5 665 776 19302995 19303112 1.020000e-19 108.0
15 TraesCS3D01G045300 chr3A 80.556 108 13 4 740 840 25938042 25937936 2.880000e-10 76.8
16 TraesCS3D01G045300 chr3B 85.861 1464 133 29 624 2053 24940129 24941552 0.000000e+00 1489.0
17 TraesCS3D01G045300 chr3B 92.118 609 41 6 2096 2699 24941531 24942137 0.000000e+00 852.0
18 TraesCS3D01G045300 chr3B 85.388 657 74 14 2056 2699 27516703 27517350 0.000000e+00 662.0
19 TraesCS3D01G045300 chr3B 85.279 591 85 2 2110 2699 30231887 30232476 2.300000e-170 608.0
20 TraesCS3D01G045300 chr3B 80.594 572 96 11 1097 1661 29728680 29729243 6.910000e-116 427.0
21 TraesCS3D01G045300 chr3B 86.313 358 45 4 2156 2511 29622823 29623178 1.170000e-103 387.0
22 TraesCS3D01G045300 chr3B 81.971 416 61 12 1251 1659 30506686 30507094 9.250000e-90 340.0
23 TraesCS3D01G045300 chrUn 81.678 846 113 20 982 1812 37954416 37955234 0.000000e+00 665.0
24 TraesCS3D01G045300 chrUn 81.625 849 114 20 982 1815 340707516 340706695 0.000000e+00 665.0
25 TraesCS3D01G045300 chrUn 81.374 655 101 10 2061 2697 37955797 37956448 5.150000e-142 514.0
26 TraesCS3D01G045300 chrUn 80.847 496 80 7 2217 2697 392408914 392408419 2.540000e-100 375.0
27 TraesCS3D01G045300 chrUn 98.413 126 0 1 1 124 108308126 108308251 1.260000e-53 220.0
28 TraesCS3D01G045300 chrUn 95.385 130 4 2 1 130 143893755 143893882 3.520000e-49 206.0
29 TraesCS3D01G045300 chr6D 78.620 594 102 20 1112 1694 2051337 2050758 1.180000e-98 370.0
30 TraesCS3D01G045300 chr6D 97.581 124 1 1 1 122 465776256 465776133 7.570000e-51 211.0
31 TraesCS3D01G045300 chr6D 97.561 123 2 1 1 122 1943990 1944112 2.720000e-50 209.0
32 TraesCS3D01G045300 chr7D 98.374 123 1 1 1 122 111413696 111413574 5.850000e-52 215.0
33 TraesCS3D01G045300 chr7D 97.600 125 1 1 1 123 617333578 617333454 2.100000e-51 213.0
34 TraesCS3D01G045300 chr1D 97.581 124 1 1 1 122 12352026 12352149 7.570000e-51 211.0
35 TraesCS3D01G045300 chr1D 95.420 131 2 2 1 127 6903620 6903490 3.520000e-49 206.0
36 TraesCS3D01G045300 chr5D 94.853 136 2 4 1 131 9458752 9458887 9.790000e-50 207.0
37 TraesCS3D01G045300 chr5D 93.750 64 4 0 122 185 424937701 424937638 2.210000e-16 97.1
38 TraesCS3D01G045300 chr4B 96.721 61 2 0 125 185 99962655 99962595 4.750000e-18 102.0
39 TraesCS3D01G045300 chr4D 97.674 43 0 1 147 188 428984941 428984983 3.730000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G045300 chr3D 17372305 17375003 2698 False 4985.00 4985 100.0000 1 2699 1 chr3D.!!$F2 2698
1 TraesCS3D01G045300 chr3D 17516156 17516952 796 True 715.00 715 83.5210 1931 2699 1 chr3D.!!$R1 768
2 TraesCS3D01G045300 chr3D 17644716 17646831 2115 True 562.05 1051 77.9925 672 2699 2 chr3D.!!$R2 2027
3 TraesCS3D01G045300 chr3D 11351526 11352069 543 False 460.00 460 82.0110 1246 1812 1 chr3D.!!$F1 566
4 TraesCS3D01G045300 chr3D 18949814 18950407 593 False 307.00 307 76.5390 1070 1654 1 chr3D.!!$F3 584
5 TraesCS3D01G045300 chr3A 19474188 19476642 2454 True 2708.00 2708 86.9320 255 2699 1 chr3A.!!$R1 2444
6 TraesCS3D01G045300 chr3A 19371143 19371947 804 False 778.00 778 84.9380 1931 2699 1 chr3A.!!$F1 768
7 TraesCS3D01G045300 chr3A 26396035 26396633 598 False 592.00 592 84.6410 2101 2693 1 chr3A.!!$F2 592
8 TraesCS3D01G045300 chr3A 26469246 26469789 543 False 579.00 579 85.8970 2156 2699 1 chr3A.!!$F5 543
9 TraesCS3D01G045300 chr3A 26448361 26448930 569 False 377.00 377 79.2450 1097 1661 1 chr3A.!!$F4 564
10 TraesCS3D01G045300 chr3A 19302995 19303960 965 False 323.00 538 84.6505 665 1658 2 chr3A.!!$F6 993
11 TraesCS3D01G045300 chr3A 25936957 25938042 1085 True 235.40 394 81.7465 740 1830 2 chr3A.!!$R2 1090
12 TraesCS3D01G045300 chr3B 24940129 24942137 2008 False 1170.50 1489 88.9895 624 2699 2 chr3B.!!$F6 2075
13 TraesCS3D01G045300 chr3B 27516703 27517350 647 False 662.00 662 85.3880 2056 2699 1 chr3B.!!$F1 643
14 TraesCS3D01G045300 chr3B 30231887 30232476 589 False 608.00 608 85.2790 2110 2699 1 chr3B.!!$F4 589
15 TraesCS3D01G045300 chr3B 29728680 29729243 563 False 427.00 427 80.5940 1097 1661 1 chr3B.!!$F3 564
16 TraesCS3D01G045300 chrUn 340706695 340707516 821 True 665.00 665 81.6250 982 1815 1 chrUn.!!$R1 833
17 TraesCS3D01G045300 chrUn 37954416 37956448 2032 False 589.50 665 81.5260 982 2697 2 chrUn.!!$F3 1715
18 TraesCS3D01G045300 chr6D 2050758 2051337 579 True 370.00 370 78.6200 1112 1694 1 chr6D.!!$R1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
110 111 0.033503 CCGGGACTAAAGGCCCATTT 60.034 55.0 21.10 0.00 44.94 2.32 F
163 164 0.035534 TGCAAGGATCGGCTAGCAAA 60.036 50.0 18.24 3.62 0.00 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1243 1444 0.032017 AGGATCTGGAGCCCGTACTT 60.032 55.0 0.91 0.0 37.67 2.24 R
2041 2649 0.741221 GGATGGCTGACTGAACGGAC 60.741 60.0 0.00 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.206958 TCGTAAGAGGCGCGACTA 57.793 55.556 18.29 0.00 45.01 2.59
26 27 2.012237 TCGTAAGAGGCGCGACTAG 58.988 57.895 18.29 4.24 45.01 2.57
27 28 1.009900 CGTAAGAGGCGCGACTAGG 60.010 63.158 18.29 0.01 43.02 3.02
28 29 1.359475 GTAAGAGGCGCGACTAGGG 59.641 63.158 18.29 0.00 0.00 3.53
29 30 1.826921 TAAGAGGCGCGACTAGGGG 60.827 63.158 18.29 0.00 0.00 4.79
45 46 2.872557 GGGGGTTTTTAGTCGCGC 59.127 61.111 0.00 0.00 0.00 6.86
46 47 1.967494 GGGGGTTTTTAGTCGCGCA 60.967 57.895 8.75 0.00 0.00 6.09
47 48 1.310216 GGGGGTTTTTAGTCGCGCAT 61.310 55.000 8.75 0.00 0.00 4.73
48 49 1.371595 GGGGTTTTTAGTCGCGCATA 58.628 50.000 8.75 0.00 0.00 3.14
49 50 1.944709 GGGGTTTTTAGTCGCGCATAT 59.055 47.619 8.75 0.00 0.00 1.78
50 51 2.356695 GGGGTTTTTAGTCGCGCATATT 59.643 45.455 8.75 0.00 0.00 1.28
51 52 3.181494 GGGGTTTTTAGTCGCGCATATTT 60.181 43.478 8.75 0.00 0.00 1.40
52 53 4.035441 GGGGTTTTTAGTCGCGCATATTTA 59.965 41.667 8.75 0.00 0.00 1.40
53 54 5.202640 GGGTTTTTAGTCGCGCATATTTAG 58.797 41.667 8.75 0.00 0.00 1.85
54 55 5.220719 GGGTTTTTAGTCGCGCATATTTAGT 60.221 40.000 8.75 0.00 0.00 2.24
55 56 5.900242 GGTTTTTAGTCGCGCATATTTAGTC 59.100 40.000 8.75 0.00 0.00 2.59
56 57 5.646467 TTTTAGTCGCGCATATTTAGTCC 57.354 39.130 8.75 0.00 0.00 3.85
57 58 2.150397 AGTCGCGCATATTTAGTCCC 57.850 50.000 8.75 0.00 0.00 4.46
58 59 0.782384 GTCGCGCATATTTAGTCCCG 59.218 55.000 8.75 0.00 0.00 5.14
59 60 0.319211 TCGCGCATATTTAGTCCCGG 60.319 55.000 8.75 0.00 0.00 5.73
60 61 0.599204 CGCGCATATTTAGTCCCGGT 60.599 55.000 8.75 0.00 0.00 5.28
61 62 1.589803 GCGCATATTTAGTCCCGGTT 58.410 50.000 0.30 0.00 0.00 4.44
62 63 1.263217 GCGCATATTTAGTCCCGGTTG 59.737 52.381 0.30 0.00 0.00 3.77
63 64 1.263217 CGCATATTTAGTCCCGGTTGC 59.737 52.381 0.00 0.00 0.00 4.17
64 65 2.294074 GCATATTTAGTCCCGGTTGCA 58.706 47.619 0.00 0.00 0.00 4.08
65 66 2.032924 GCATATTTAGTCCCGGTTGCAC 59.967 50.000 0.00 0.00 0.00 4.57
66 67 3.275143 CATATTTAGTCCCGGTTGCACA 58.725 45.455 0.00 0.00 0.00 4.57
67 68 1.821216 ATTTAGTCCCGGTTGCACAG 58.179 50.000 0.00 0.00 0.00 3.66
68 69 0.887387 TTTAGTCCCGGTTGCACAGC 60.887 55.000 0.00 0.00 0.00 4.40
69 70 2.741486 TTAGTCCCGGTTGCACAGCC 62.741 60.000 0.00 0.00 0.00 4.85
75 76 4.643387 GGTTGCACAGCCGGGACT 62.643 66.667 2.18 0.00 0.00 3.85
76 77 2.345991 GTTGCACAGCCGGGACTA 59.654 61.111 2.18 0.00 0.00 2.59
77 78 1.302192 GTTGCACAGCCGGGACTAA 60.302 57.895 2.18 0.00 0.00 2.24
78 79 0.887387 GTTGCACAGCCGGGACTAAA 60.887 55.000 2.18 0.00 0.00 1.85
79 80 0.605319 TTGCACAGCCGGGACTAAAG 60.605 55.000 2.18 0.00 0.00 1.85
80 81 1.745489 GCACAGCCGGGACTAAAGG 60.745 63.158 2.18 0.00 0.00 3.11
84 85 2.675371 GCCGGGACTAAAGGCCTT 59.325 61.111 13.78 13.78 44.80 4.35
85 86 1.001269 GCCGGGACTAAAGGCCTTT 60.001 57.895 32.37 32.37 44.80 3.11
86 87 1.313091 GCCGGGACTAAAGGCCTTTG 61.313 60.000 35.99 26.94 44.80 2.77
87 88 1.313091 CCGGGACTAAAGGCCTTTGC 61.313 60.000 35.99 24.64 34.23 3.68
88 89 1.644786 CGGGACTAAAGGCCTTTGCG 61.645 60.000 35.99 27.79 38.85 4.85
89 90 0.322187 GGGACTAAAGGCCTTTGCGA 60.322 55.000 35.99 18.65 38.85 5.10
90 91 1.530323 GGACTAAAGGCCTTTGCGAA 58.470 50.000 35.99 18.29 38.85 4.70
91 92 1.199327 GGACTAAAGGCCTTTGCGAAC 59.801 52.381 35.99 23.16 38.85 3.95
92 93 1.199327 GACTAAAGGCCTTTGCGAACC 59.801 52.381 35.99 17.08 38.85 3.62
93 94 0.168128 CTAAAGGCCTTTGCGAACCG 59.832 55.000 35.99 14.04 38.85 4.44
94 95 1.238625 TAAAGGCCTTTGCGAACCGG 61.239 55.000 35.99 0.00 38.85 5.28
97 98 3.733960 GCCTTTGCGAACCGGGAC 61.734 66.667 6.32 0.00 0.00 4.46
98 99 2.032071 CCTTTGCGAACCGGGACT 59.968 61.111 6.32 0.00 0.00 3.85
99 100 1.294138 CCTTTGCGAACCGGGACTA 59.706 57.895 6.32 0.00 0.00 2.59
100 101 0.320946 CCTTTGCGAACCGGGACTAA 60.321 55.000 6.32 0.00 0.00 2.24
101 102 1.515081 CTTTGCGAACCGGGACTAAA 58.485 50.000 6.32 0.00 0.00 1.85
102 103 1.463444 CTTTGCGAACCGGGACTAAAG 59.537 52.381 6.32 6.26 0.00 1.85
103 104 0.320946 TTGCGAACCGGGACTAAAGG 60.321 55.000 6.32 0.00 0.00 3.11
104 105 2.104859 GCGAACCGGGACTAAAGGC 61.105 63.158 6.32 0.00 0.00 4.35
105 106 1.449070 CGAACCGGGACTAAAGGCC 60.449 63.158 6.32 0.00 0.00 5.19
106 107 1.077930 GAACCGGGACTAAAGGCCC 60.078 63.158 11.29 11.29 41.11 5.80
107 108 1.844544 GAACCGGGACTAAAGGCCCA 61.845 60.000 21.10 0.00 44.94 5.36
108 109 1.212250 AACCGGGACTAAAGGCCCAT 61.212 55.000 21.10 5.25 44.94 4.00
109 110 1.212250 ACCGGGACTAAAGGCCCATT 61.212 55.000 21.10 3.50 44.94 3.16
110 111 0.033503 CCGGGACTAAAGGCCCATTT 60.034 55.000 21.10 0.00 44.94 2.32
111 112 1.618616 CCGGGACTAAAGGCCCATTTT 60.619 52.381 21.10 0.00 44.94 1.82
112 113 1.749063 CGGGACTAAAGGCCCATTTTC 59.251 52.381 21.10 0.00 44.94 2.29
113 114 2.620627 CGGGACTAAAGGCCCATTTTCT 60.621 50.000 21.10 0.00 44.94 2.52
114 115 3.371166 CGGGACTAAAGGCCCATTTTCTA 60.371 47.826 21.10 0.00 44.94 2.10
115 116 3.952323 GGGACTAAAGGCCCATTTTCTAC 59.048 47.826 16.61 0.00 44.07 2.59
116 117 3.952323 GGACTAAAGGCCCATTTTCTACC 59.048 47.826 0.00 0.00 0.00 3.18
117 118 4.569015 GGACTAAAGGCCCATTTTCTACCA 60.569 45.833 0.00 0.00 0.00 3.25
118 119 4.600062 ACTAAAGGCCCATTTTCTACCAG 58.400 43.478 0.00 0.00 0.00 4.00
119 120 3.542969 AAAGGCCCATTTTCTACCAGT 57.457 42.857 0.00 0.00 0.00 4.00
120 121 2.514458 AGGCCCATTTTCTACCAGTG 57.486 50.000 0.00 0.00 0.00 3.66
121 122 1.710809 AGGCCCATTTTCTACCAGTGT 59.289 47.619 0.00 0.00 0.00 3.55
122 123 2.916934 AGGCCCATTTTCTACCAGTGTA 59.083 45.455 0.00 0.00 0.00 2.90
123 124 3.054361 AGGCCCATTTTCTACCAGTGTAG 60.054 47.826 0.00 0.00 44.90 2.74
124 125 2.683362 GCCCATTTTCTACCAGTGTAGC 59.317 50.000 0.00 0.00 43.51 3.58
125 126 3.872240 GCCCATTTTCTACCAGTGTAGCA 60.872 47.826 0.00 0.00 43.51 3.49
126 127 3.689649 CCCATTTTCTACCAGTGTAGCAC 59.310 47.826 0.00 0.00 43.51 4.40
127 128 3.689649 CCATTTTCTACCAGTGTAGCACC 59.310 47.826 0.00 0.00 43.51 5.01
128 129 3.412237 TTTTCTACCAGTGTAGCACCC 57.588 47.619 0.00 0.00 43.51 4.61
129 130 2.320681 TTCTACCAGTGTAGCACCCT 57.679 50.000 0.00 0.00 43.51 4.34
130 131 2.320681 TCTACCAGTGTAGCACCCTT 57.679 50.000 0.00 0.00 43.51 3.95
131 132 1.899814 TCTACCAGTGTAGCACCCTTG 59.100 52.381 0.00 0.00 43.51 3.61
132 133 0.981183 TACCAGTGTAGCACCCTTGG 59.019 55.000 5.00 5.00 34.65 3.61
133 134 0.766674 ACCAGTGTAGCACCCTTGGA 60.767 55.000 11.36 0.00 33.34 3.53
134 135 0.620556 CCAGTGTAGCACCCTTGGAT 59.379 55.000 1.29 0.00 31.52 3.41
135 136 1.004745 CCAGTGTAGCACCCTTGGATT 59.995 52.381 1.29 0.00 31.52 3.01
136 137 2.238646 CCAGTGTAGCACCCTTGGATTA 59.761 50.000 1.29 0.00 31.52 1.75
137 138 3.535561 CAGTGTAGCACCCTTGGATTAG 58.464 50.000 0.00 0.00 34.49 1.73
138 139 3.055094 CAGTGTAGCACCCTTGGATTAGT 60.055 47.826 0.00 0.00 34.49 2.24
139 140 3.587506 AGTGTAGCACCCTTGGATTAGTT 59.412 43.478 0.00 0.00 34.49 2.24
140 141 3.689649 GTGTAGCACCCTTGGATTAGTTG 59.310 47.826 0.00 0.00 0.00 3.16
141 142 3.329520 TGTAGCACCCTTGGATTAGTTGT 59.670 43.478 0.00 0.00 0.00 3.32
142 143 3.073274 AGCACCCTTGGATTAGTTGTC 57.927 47.619 0.00 0.00 0.00 3.18
143 144 1.737793 GCACCCTTGGATTAGTTGTCG 59.262 52.381 0.00 0.00 0.00 4.35
144 145 2.874457 GCACCCTTGGATTAGTTGTCGT 60.874 50.000 0.00 0.00 0.00 4.34
145 146 2.742053 CACCCTTGGATTAGTTGTCGTG 59.258 50.000 0.00 0.00 0.00 4.35
146 147 1.737793 CCCTTGGATTAGTTGTCGTGC 59.262 52.381 0.00 0.00 0.00 5.34
147 148 2.422597 CCTTGGATTAGTTGTCGTGCA 58.577 47.619 0.00 0.00 0.00 4.57
148 149 2.811431 CCTTGGATTAGTTGTCGTGCAA 59.189 45.455 0.00 0.00 34.16 4.08
149 150 3.120199 CCTTGGATTAGTTGTCGTGCAAG 60.120 47.826 0.00 0.00 39.01 4.01
150 151 2.422597 TGGATTAGTTGTCGTGCAAGG 58.577 47.619 0.00 0.00 37.83 3.61
151 152 2.037902 TGGATTAGTTGTCGTGCAAGGA 59.962 45.455 0.00 0.00 37.83 3.36
152 153 3.270877 GGATTAGTTGTCGTGCAAGGAT 58.729 45.455 0.00 0.00 37.83 3.24
153 154 3.309954 GGATTAGTTGTCGTGCAAGGATC 59.690 47.826 0.00 0.00 37.83 3.36
154 155 1.990799 TAGTTGTCGTGCAAGGATCG 58.009 50.000 0.00 0.00 37.83 3.69
155 156 0.670546 AGTTGTCGTGCAAGGATCGG 60.671 55.000 0.00 0.00 37.83 4.18
156 157 2.032634 TTGTCGTGCAAGGATCGGC 61.033 57.895 0.00 0.00 31.14 5.54
157 158 2.125512 GTCGTGCAAGGATCGGCT 60.126 61.111 0.00 0.00 31.14 5.52
158 159 1.141019 GTCGTGCAAGGATCGGCTA 59.859 57.895 0.00 0.00 31.14 3.93
159 160 0.872021 GTCGTGCAAGGATCGGCTAG 60.872 60.000 0.00 0.00 31.14 3.42
160 161 2.240500 CGTGCAAGGATCGGCTAGC 61.241 63.158 6.04 6.04 0.00 3.42
161 162 1.153369 GTGCAAGGATCGGCTAGCA 60.153 57.895 18.24 0.00 0.00 3.49
162 163 0.744414 GTGCAAGGATCGGCTAGCAA 60.744 55.000 18.24 4.04 33.37 3.91
163 164 0.035534 TGCAAGGATCGGCTAGCAAA 60.036 50.000 18.24 3.62 0.00 3.68
164 165 0.378610 GCAAGGATCGGCTAGCAAAC 59.621 55.000 18.24 2.51 0.00 2.93
165 166 2.014068 GCAAGGATCGGCTAGCAAACT 61.014 52.381 18.24 3.97 0.00 2.66
166 167 1.667724 CAAGGATCGGCTAGCAAACTG 59.332 52.381 18.24 0.35 0.00 3.16
167 168 0.905357 AGGATCGGCTAGCAAACTGT 59.095 50.000 18.24 0.00 0.00 3.55
168 169 1.134670 AGGATCGGCTAGCAAACTGTC 60.135 52.381 18.24 5.26 0.00 3.51
169 170 0.924090 GATCGGCTAGCAAACTGTCG 59.076 55.000 18.24 9.00 0.00 4.35
170 171 0.246635 ATCGGCTAGCAAACTGTCGT 59.753 50.000 18.24 0.00 0.00 4.34
171 172 0.666274 TCGGCTAGCAAACTGTCGTG 60.666 55.000 18.24 0.00 0.00 4.35
172 173 1.497722 GGCTAGCAAACTGTCGTGC 59.502 57.895 18.24 8.03 41.22 5.34
173 174 1.130613 GCTAGCAAACTGTCGTGCG 59.869 57.895 10.63 0.68 45.62 5.34
174 175 1.557443 GCTAGCAAACTGTCGTGCGT 61.557 55.000 10.63 3.47 45.62 5.24
175 176 1.693467 CTAGCAAACTGTCGTGCGTA 58.307 50.000 9.84 4.22 45.62 4.42
176 177 2.055838 CTAGCAAACTGTCGTGCGTAA 58.944 47.619 9.84 1.74 45.62 3.18
177 178 1.292061 AGCAAACTGTCGTGCGTAAA 58.708 45.000 9.84 0.00 45.62 2.01
178 179 1.260561 AGCAAACTGTCGTGCGTAAAG 59.739 47.619 9.84 0.00 45.62 1.85
179 180 1.004292 GCAAACTGTCGTGCGTAAAGT 60.004 47.619 1.29 0.00 0.00 2.66
180 181 2.219216 GCAAACTGTCGTGCGTAAAGTA 59.781 45.455 1.29 0.00 0.00 2.24
181 182 3.660904 GCAAACTGTCGTGCGTAAAGTAG 60.661 47.826 1.29 0.00 0.00 2.57
182 183 3.360249 AACTGTCGTGCGTAAAGTAGT 57.640 42.857 0.00 0.00 0.00 2.73
183 184 3.360249 ACTGTCGTGCGTAAAGTAGTT 57.640 42.857 0.00 0.00 0.00 2.24
184 185 3.709987 ACTGTCGTGCGTAAAGTAGTTT 58.290 40.909 0.37 0.37 0.00 2.66
185 186 3.488310 ACTGTCGTGCGTAAAGTAGTTTG 59.512 43.478 5.77 0.00 0.00 2.93
186 187 2.796031 TGTCGTGCGTAAAGTAGTTTGG 59.204 45.455 5.77 0.00 0.00 3.28
187 188 2.796593 GTCGTGCGTAAAGTAGTTTGGT 59.203 45.455 5.77 0.00 0.00 3.67
188 189 3.980775 GTCGTGCGTAAAGTAGTTTGGTA 59.019 43.478 5.77 0.00 0.00 3.25
189 190 4.444056 GTCGTGCGTAAAGTAGTTTGGTAA 59.556 41.667 5.77 0.00 0.00 2.85
190 191 5.046529 TCGTGCGTAAAGTAGTTTGGTAAA 58.953 37.500 5.77 0.00 0.00 2.01
191 192 5.175491 TCGTGCGTAAAGTAGTTTGGTAAAG 59.825 40.000 5.77 0.00 0.00 1.85
192 193 5.050837 CGTGCGTAAAGTAGTTTGGTAAAGT 60.051 40.000 5.77 0.00 0.00 2.66
193 194 6.143758 CGTGCGTAAAGTAGTTTGGTAAAGTA 59.856 38.462 5.77 0.00 0.00 2.24
194 195 7.306515 CGTGCGTAAAGTAGTTTGGTAAAGTAA 60.307 37.037 5.77 0.00 0.00 2.24
195 196 8.334632 GTGCGTAAAGTAGTTTGGTAAAGTAAA 58.665 33.333 5.77 0.00 0.00 2.01
196 197 8.334632 TGCGTAAAGTAGTTTGGTAAAGTAAAC 58.665 33.333 5.77 0.00 37.12 2.01
197 198 8.551205 GCGTAAAGTAGTTTGGTAAAGTAAACT 58.449 33.333 5.77 0.00 45.89 2.66
204 205 7.140522 AGTTTGGTAAAGTAAACTACTCCCA 57.859 36.000 0.00 0.00 43.25 4.37
205 206 7.576403 AGTTTGGTAAAGTAAACTACTCCCAA 58.424 34.615 0.00 7.78 43.25 4.12
206 207 7.718314 AGTTTGGTAAAGTAAACTACTCCCAAG 59.282 37.037 0.00 0.00 43.25 3.61
207 208 6.752285 TGGTAAAGTAAACTACTCCCAAGT 57.248 37.500 0.00 0.00 38.26 3.16
208 209 6.527423 TGGTAAAGTAAACTACTCCCAAGTG 58.473 40.000 0.00 0.00 38.26 3.16
209 210 5.936372 GGTAAAGTAAACTACTCCCAAGTGG 59.064 44.000 0.00 0.00 38.26 4.00
220 221 3.855159 CCAAGTGGGTAGTACCAGC 57.145 57.895 20.97 12.20 42.20 4.85
221 222 1.276622 CCAAGTGGGTAGTACCAGCT 58.723 55.000 20.97 14.18 42.20 4.24
222 223 1.628846 CCAAGTGGGTAGTACCAGCTT 59.371 52.381 20.97 18.68 42.20 3.74
223 224 2.615493 CCAAGTGGGTAGTACCAGCTTG 60.615 54.545 29.42 29.42 42.20 4.01
224 225 0.613777 AGTGGGTAGTACCAGCTTGC 59.386 55.000 20.97 3.02 42.20 4.01
225 226 0.323629 GTGGGTAGTACCAGCTTGCA 59.676 55.000 20.97 5.69 42.20 4.08
226 227 1.065418 GTGGGTAGTACCAGCTTGCAT 60.065 52.381 20.97 0.00 42.20 3.96
227 228 1.633432 TGGGTAGTACCAGCTTGCATT 59.367 47.619 20.97 0.00 41.02 3.56
228 229 2.841266 TGGGTAGTACCAGCTTGCATTA 59.159 45.455 20.97 0.00 41.02 1.90
229 230 3.118408 TGGGTAGTACCAGCTTGCATTAG 60.118 47.826 20.97 0.00 41.02 1.73
230 231 3.118371 GGGTAGTACCAGCTTGCATTAGT 60.118 47.826 20.97 0.00 41.02 2.24
231 232 4.100498 GGGTAGTACCAGCTTGCATTAGTA 59.900 45.833 20.97 0.00 41.02 1.82
232 233 5.290386 GGTAGTACCAGCTTGCATTAGTAG 58.710 45.833 14.82 0.00 38.42 2.57
233 234 3.798202 AGTACCAGCTTGCATTAGTAGC 58.202 45.455 0.00 0.00 35.16 3.58
234 235 2.044123 ACCAGCTTGCATTAGTAGCC 57.956 50.000 3.72 0.00 35.53 3.93
235 236 1.561542 ACCAGCTTGCATTAGTAGCCT 59.438 47.619 3.72 0.00 35.53 4.58
236 237 2.771943 ACCAGCTTGCATTAGTAGCCTA 59.228 45.455 3.72 0.00 35.53 3.93
237 238 3.181461 ACCAGCTTGCATTAGTAGCCTAG 60.181 47.826 3.72 0.00 35.53 3.02
238 239 3.181461 CCAGCTTGCATTAGTAGCCTAGT 60.181 47.826 3.72 0.00 35.53 2.57
239 240 4.039245 CCAGCTTGCATTAGTAGCCTAGTA 59.961 45.833 3.72 0.00 35.53 1.82
240 241 5.226396 CAGCTTGCATTAGTAGCCTAGTAG 58.774 45.833 3.72 0.00 35.53 2.57
241 242 4.282195 AGCTTGCATTAGTAGCCTAGTAGG 59.718 45.833 12.27 12.27 38.80 3.18
242 243 4.039366 GCTTGCATTAGTAGCCTAGTAGGT 59.961 45.833 17.69 7.22 37.80 3.08
243 244 5.531122 TTGCATTAGTAGCCTAGTAGGTG 57.469 43.478 17.69 7.16 37.80 4.00
244 245 3.321111 TGCATTAGTAGCCTAGTAGGTGC 59.679 47.826 17.69 16.39 37.80 5.01
245 246 3.574826 GCATTAGTAGCCTAGTAGGTGCT 59.425 47.826 17.69 14.21 37.80 4.40
246 247 4.321378 GCATTAGTAGCCTAGTAGGTGCTC 60.321 50.000 17.69 6.42 37.80 4.26
247 248 1.970092 AGTAGCCTAGTAGGTGCTCG 58.030 55.000 17.69 0.00 37.80 5.03
248 249 1.212441 AGTAGCCTAGTAGGTGCTCGT 59.788 52.381 17.69 0.00 37.80 4.18
249 250 2.022934 GTAGCCTAGTAGGTGCTCGTT 58.977 52.381 17.69 0.00 37.80 3.85
250 251 2.431954 AGCCTAGTAGGTGCTCGTTA 57.568 50.000 17.69 0.00 37.80 3.18
251 252 2.299521 AGCCTAGTAGGTGCTCGTTAG 58.700 52.381 17.69 0.00 37.80 2.34
252 253 1.269154 GCCTAGTAGGTGCTCGTTAGC 60.269 57.143 17.69 0.00 41.87 3.09
253 254 3.842227 GCCTAGTAGGTGCTCGTTAGCA 61.842 54.545 17.69 0.00 45.83 3.49
267 268 1.796459 GTTAGCACAAGTACGTGGGTG 59.204 52.381 12.74 8.55 37.37 4.61
271 272 1.710013 CACAAGTACGTGGGTGCTAG 58.290 55.000 13.47 0.00 38.22 3.42
275 276 2.450609 AGTACGTGGGTGCTAGTTTG 57.549 50.000 0.00 0.00 37.34 2.93
278 279 0.250727 ACGTGGGTGCTAGTTTGCAT 60.251 50.000 0.00 0.00 45.23 3.96
279 280 0.447801 CGTGGGTGCTAGTTTGCATC 59.552 55.000 0.00 0.00 45.23 3.91
319 320 4.376340 AGCACAAGTGGAAAGAAAGTTG 57.624 40.909 2.00 0.00 33.74 3.16
327 328 3.815401 GTGGAAAGAAAGTTGCTGCTAGA 59.185 43.478 0.00 0.00 0.00 2.43
329 330 3.189495 GGAAAGAAAGTTGCTGCTAGACC 59.811 47.826 0.00 0.00 0.00 3.85
330 331 3.778954 AAGAAAGTTGCTGCTAGACCT 57.221 42.857 0.00 0.00 0.00 3.85
331 332 4.891992 AAGAAAGTTGCTGCTAGACCTA 57.108 40.909 0.00 0.00 0.00 3.08
332 333 4.464069 AGAAAGTTGCTGCTAGACCTAG 57.536 45.455 0.00 0.00 36.29 3.02
354 355 1.100510 TACGGACCAAGACTGGATCG 58.899 55.000 0.00 4.12 46.92 3.69
355 356 0.611062 ACGGACCAAGACTGGATCGA 60.611 55.000 14.16 0.00 46.92 3.59
356 357 0.747255 CGGACCAAGACTGGATCGAT 59.253 55.000 0.00 0.00 46.92 3.59
357 358 1.269309 CGGACCAAGACTGGATCGATC 60.269 57.143 17.36 17.36 46.92 3.69
358 359 1.757118 GGACCAAGACTGGATCGATCA 59.243 52.381 25.93 11.75 46.92 2.92
359 360 2.223923 GGACCAAGACTGGATCGATCAG 60.224 54.545 25.93 21.21 46.92 2.90
369 370 2.092484 TGGATCGATCAGCCCAATTTGA 60.092 45.455 25.93 0.00 0.00 2.69
372 373 3.071874 TCGATCAGCCCAATTTGAACT 57.928 42.857 0.00 0.00 0.00 3.01
377 378 3.831323 TCAGCCCAATTTGAACTCTCAA 58.169 40.909 0.00 0.00 39.87 3.02
379 380 3.571401 CAGCCCAATTTGAACTCTCAACT 59.429 43.478 0.00 0.00 41.34 3.16
382 383 4.083057 GCCCAATTTGAACTCTCAACTCTC 60.083 45.833 0.00 0.00 41.34 3.20
415 417 4.193090 TGGCTGACAGTAGTTTCGAAAAA 58.807 39.130 13.10 0.74 0.00 1.94
417 419 4.319549 GGCTGACAGTAGTTTCGAAAAAGG 60.320 45.833 13.10 3.67 0.00 3.11
419 421 5.220796 GCTGACAGTAGTTTCGAAAAAGGTT 60.221 40.000 13.10 0.00 0.00 3.50
420 422 6.354039 TGACAGTAGTTTCGAAAAAGGTTC 57.646 37.500 13.10 6.01 0.00 3.62
421 423 5.875910 TGACAGTAGTTTCGAAAAAGGTTCA 59.124 36.000 13.10 8.46 0.00 3.18
423 425 7.094720 TGACAGTAGTTTCGAAAAAGGTTCAAA 60.095 33.333 13.10 0.00 0.00 2.69
424 426 7.595604 ACAGTAGTTTCGAAAAAGGTTCAAAA 58.404 30.769 13.10 0.00 0.00 2.44
446 448 6.701145 AAGCGATTCATCAGTCTTCTAGTA 57.299 37.500 0.00 0.00 0.00 1.82
481 483 9.213799 GGATTTTGGAAAACATGCTAAACATTA 57.786 29.630 0.00 0.00 36.64 1.90
550 569 4.636648 TGGAAAATTCGTGCCAATACGTAT 59.363 37.500 1.14 1.14 44.06 3.06
552 571 5.220700 GGAAAATTCGTGCCAATACGTATGA 60.221 40.000 9.24 0.00 44.06 2.15
580 599 5.705905 GCTAATTGGAGTACTGTCAAAGGTT 59.294 40.000 0.00 0.00 0.00 3.50
584 618 5.881923 TGGAGTACTGTCAAAGGTTTACT 57.118 39.130 0.00 0.00 0.00 2.24
588 622 7.089538 GGAGTACTGTCAAAGGTTTACTAGTC 58.910 42.308 0.00 0.00 0.00 2.59
589 623 6.990798 AGTACTGTCAAAGGTTTACTAGTCC 58.009 40.000 0.00 0.00 0.00 3.85
598 632 1.842546 GTTTACTAGTCCGCGCTTACG 59.157 52.381 5.56 0.00 44.07 3.18
684 722 3.047807 ATGGGTCCATGGCCGACAG 62.048 63.158 6.96 0.00 35.03 3.51
843 931 0.179116 CCGGCTGATCACTCACTGAG 60.179 60.000 4.36 4.36 35.52 3.35
896 1032 6.015027 AGTAGGTACGATGAATATCACAGC 57.985 41.667 0.00 0.00 32.67 4.40
926 1069 8.560124 ACAATTCTATATCCTCCTCCATATCC 57.440 38.462 0.00 0.00 0.00 2.59
927 1070 8.131627 ACAATTCTATATCCTCCTCCATATCCA 58.868 37.037 0.00 0.00 0.00 3.41
928 1071 8.428063 CAATTCTATATCCTCCTCCATATCCAC 58.572 40.741 0.00 0.00 0.00 4.02
929 1072 6.934720 TCTATATCCTCCTCCATATCCACT 57.065 41.667 0.00 0.00 0.00 4.00
953 1099 5.047377 TCCACTTTGTGCCAAAGAATTATCC 60.047 40.000 25.14 0.00 31.34 2.59
954 1100 5.047092 CCACTTTGTGCCAAAGAATTATCCT 60.047 40.000 25.14 6.18 31.34 3.24
955 1101 5.865552 CACTTTGTGCCAAAGAATTATCCTG 59.134 40.000 25.14 12.32 0.00 3.86
956 1102 4.454728 TTGTGCCAAAGAATTATCCTGC 57.545 40.909 0.00 0.00 0.00 4.85
957 1103 3.700538 TGTGCCAAAGAATTATCCTGCT 58.299 40.909 0.00 0.00 0.00 4.24
958 1104 4.854173 TGTGCCAAAGAATTATCCTGCTA 58.146 39.130 0.00 0.00 0.00 3.49
960 1106 3.876914 TGCCAAAGAATTATCCTGCTACG 59.123 43.478 0.00 0.00 0.00 3.51
996 1176 2.877866 TCTACCGGAATCATCCTCTCC 58.122 52.381 9.46 0.00 44.17 3.71
1148 1346 3.423154 CGTCTCAGCCCCGTTTGC 61.423 66.667 0.00 0.00 0.00 3.68
1153 1351 3.508840 CAGCCCCGTTTGCGATCC 61.509 66.667 0.00 0.00 41.33 3.36
1236 1437 2.425392 CGTCCCCTACCTTGGGTACTAT 60.425 54.545 0.00 0.00 45.70 2.12
1243 1444 0.464036 CCTTGGGTACTATGAGCGCA 59.536 55.000 11.47 0.00 0.00 6.09
1397 1610 1.115467 CCTCCGTTCTACATGAGCCT 58.885 55.000 0.00 0.00 0.00 4.58
1435 1648 0.037326 CTTCTACAACTGCGCCAGGA 60.037 55.000 4.18 0.00 35.51 3.86
1436 1649 0.394938 TTCTACAACTGCGCCAGGAA 59.605 50.000 4.18 0.00 35.51 3.36
1540 1772 2.948386 TCCGGCAGGATCGATAGAG 58.052 57.895 0.00 0.00 42.75 2.43
1541 1773 0.609406 TCCGGCAGGATCGATAGAGG 60.609 60.000 0.00 0.00 42.75 3.69
1542 1774 3.950400 TCCGGCAGGATCGATAGAGGG 62.950 61.905 0.00 0.00 42.75 4.30
1753 1998 1.074405 ACAATCTGGCCTCAGCTTCAA 59.926 47.619 3.32 0.00 40.69 2.69
1762 2012 5.311265 TGGCCTCAGCTTCAATTATCTATG 58.689 41.667 3.32 0.00 39.73 2.23
1928 2504 8.664798 GGGACACTAATTAAAAATTGGAAATGC 58.335 33.333 3.17 0.00 0.00 3.56
1957 2533 1.445871 TAGCGCGTTGACTCTGACTA 58.554 50.000 8.43 0.00 0.00 2.59
2041 2649 1.202268 CGTTAACTAGTCCTCGCCAGG 60.202 57.143 3.71 0.00 42.01 4.45
2046 2654 3.278072 TAGTCCTCGCCAGGTCCGT 62.278 63.158 0.00 0.00 41.28 4.69
2186 2815 1.813513 AGAAATGCGGTGACCTGAAG 58.186 50.000 0.00 0.00 0.00 3.02
2281 2913 1.744741 GCAGCCAAGCTCTCCTCAC 60.745 63.158 0.00 0.00 36.40 3.51
2441 3079 1.798223 CCGTTCGTCATCAGCAAGAAA 59.202 47.619 0.00 0.00 0.00 2.52
2468 3106 1.372997 GCTGCTCGTCCTCGACAAA 60.373 57.895 0.00 0.00 41.35 2.83
2579 3235 4.629523 GAACCGGGCGTTGTCCCA 62.630 66.667 6.32 0.00 46.92 4.37
2627 3286 3.370231 CTTGGTTTTCCGGGCGGG 61.370 66.667 0.00 4.42 44.36 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.157073 GCCTCTTACGAACCGCGAC 61.157 63.158 8.23 0.00 44.57 5.19
1 2 2.180017 GCCTCTTACGAACCGCGA 59.820 61.111 8.23 0.00 44.57 5.87
4 5 3.245315 CGCGCCTCTTACGAACCG 61.245 66.667 0.00 0.00 0.00 4.44
5 6 2.157073 GTCGCGCCTCTTACGAACC 61.157 63.158 0.00 0.00 37.60 3.62
6 7 0.097674 TAGTCGCGCCTCTTACGAAC 59.902 55.000 0.00 0.00 37.60 3.95
7 8 0.376152 CTAGTCGCGCCTCTTACGAA 59.624 55.000 0.00 0.00 37.60 3.85
8 9 1.434622 CCTAGTCGCGCCTCTTACGA 61.435 60.000 0.00 0.00 0.00 3.43
9 10 1.009900 CCTAGTCGCGCCTCTTACG 60.010 63.158 0.00 0.00 0.00 3.18
10 11 1.359475 CCCTAGTCGCGCCTCTTAC 59.641 63.158 0.00 0.00 0.00 2.34
11 12 1.826921 CCCCTAGTCGCGCCTCTTA 60.827 63.158 0.00 0.00 0.00 2.10
12 13 3.148279 CCCCTAGTCGCGCCTCTT 61.148 66.667 0.00 0.00 0.00 2.85
28 29 1.310216 ATGCGCGACTAAAAACCCCC 61.310 55.000 12.10 0.00 0.00 5.40
29 30 1.371595 TATGCGCGACTAAAAACCCC 58.628 50.000 12.10 0.00 0.00 4.95
30 31 3.685836 AATATGCGCGACTAAAAACCC 57.314 42.857 12.10 0.00 0.00 4.11
31 32 5.803118 ACTAAATATGCGCGACTAAAAACC 58.197 37.500 12.10 0.00 0.00 3.27
32 33 5.900242 GGACTAAATATGCGCGACTAAAAAC 59.100 40.000 12.10 0.00 0.00 2.43
33 34 5.006941 GGGACTAAATATGCGCGACTAAAAA 59.993 40.000 12.10 0.00 0.00 1.94
34 35 4.508861 GGGACTAAATATGCGCGACTAAAA 59.491 41.667 12.10 0.00 0.00 1.52
35 36 4.053295 GGGACTAAATATGCGCGACTAAA 58.947 43.478 12.10 0.00 0.00 1.85
36 37 3.645884 GGGACTAAATATGCGCGACTAA 58.354 45.455 12.10 0.00 0.00 2.24
37 38 2.351060 CGGGACTAAATATGCGCGACTA 60.351 50.000 12.10 0.00 38.72 2.59
38 39 1.602165 CGGGACTAAATATGCGCGACT 60.602 52.381 12.10 0.00 38.72 4.18
39 40 0.782384 CGGGACTAAATATGCGCGAC 59.218 55.000 12.10 0.88 38.72 5.19
40 41 0.319211 CCGGGACTAAATATGCGCGA 60.319 55.000 12.10 0.00 38.72 5.87
41 42 0.599204 ACCGGGACTAAATATGCGCG 60.599 55.000 6.32 0.00 36.61 6.86
42 43 1.263217 CAACCGGGACTAAATATGCGC 59.737 52.381 6.32 0.00 0.00 6.09
43 44 1.263217 GCAACCGGGACTAAATATGCG 59.737 52.381 6.32 0.00 0.00 4.73
44 45 2.032924 GTGCAACCGGGACTAAATATGC 59.967 50.000 6.32 2.60 34.56 3.14
45 46 3.275143 TGTGCAACCGGGACTAAATATG 58.725 45.455 6.32 0.00 38.87 1.78
46 47 3.541632 CTGTGCAACCGGGACTAAATAT 58.458 45.455 6.32 0.00 38.87 1.28
47 48 2.937873 GCTGTGCAACCGGGACTAAATA 60.938 50.000 6.32 0.00 38.87 1.40
48 49 1.821216 CTGTGCAACCGGGACTAAAT 58.179 50.000 6.32 0.00 38.87 1.40
49 50 0.887387 GCTGTGCAACCGGGACTAAA 60.887 55.000 6.32 0.00 38.87 1.85
50 51 1.302192 GCTGTGCAACCGGGACTAA 60.302 57.895 6.32 0.00 38.87 2.24
51 52 2.345991 GCTGTGCAACCGGGACTA 59.654 61.111 6.32 0.00 38.87 2.59
52 53 4.643387 GGCTGTGCAACCGGGACT 62.643 66.667 6.32 0.00 38.87 3.85
58 59 2.741486 TTAGTCCCGGCTGTGCAACC 62.741 60.000 0.00 0.00 34.36 3.77
59 60 0.887387 TTTAGTCCCGGCTGTGCAAC 60.887 55.000 0.00 0.00 37.35 4.17
60 61 0.605319 CTTTAGTCCCGGCTGTGCAA 60.605 55.000 0.00 0.00 0.00 4.08
61 62 1.003839 CTTTAGTCCCGGCTGTGCA 60.004 57.895 0.00 0.00 0.00 4.57
62 63 1.745489 CCTTTAGTCCCGGCTGTGC 60.745 63.158 0.00 0.00 0.00 4.57
63 64 1.745489 GCCTTTAGTCCCGGCTGTG 60.745 63.158 0.00 0.00 40.62 3.66
64 65 2.669240 GCCTTTAGTCCCGGCTGT 59.331 61.111 0.00 0.00 40.62 4.40
65 66 2.124695 GGCCTTTAGTCCCGGCTG 60.125 66.667 0.00 0.00 43.29 4.85
66 67 1.498176 AAAGGCCTTTAGTCCCGGCT 61.498 55.000 29.47 0.30 43.29 5.52
67 68 1.001269 AAAGGCCTTTAGTCCCGGC 60.001 57.895 29.47 0.00 43.03 6.13
68 69 1.313091 GCAAAGGCCTTTAGTCCCGG 61.313 60.000 29.94 16.67 0.00 5.73
69 70 1.644786 CGCAAAGGCCTTTAGTCCCG 61.645 60.000 29.94 21.01 36.38 5.14
70 71 0.322187 TCGCAAAGGCCTTTAGTCCC 60.322 55.000 29.94 14.43 36.38 4.46
71 72 1.199327 GTTCGCAAAGGCCTTTAGTCC 59.801 52.381 29.94 16.69 36.38 3.85
72 73 1.199327 GGTTCGCAAAGGCCTTTAGTC 59.801 52.381 29.94 19.52 36.38 2.59
73 74 1.244816 GGTTCGCAAAGGCCTTTAGT 58.755 50.000 29.94 6.35 36.38 2.24
74 75 0.168128 CGGTTCGCAAAGGCCTTTAG 59.832 55.000 29.94 24.65 36.38 1.85
75 76 1.238625 CCGGTTCGCAAAGGCCTTTA 61.239 55.000 29.94 12.86 36.38 1.85
76 77 2.561037 CCGGTTCGCAAAGGCCTTT 61.561 57.895 25.47 25.47 36.38 3.11
77 78 2.983592 CCGGTTCGCAAAGGCCTT 60.984 61.111 13.78 13.78 36.38 4.35
80 81 2.791501 TAGTCCCGGTTCGCAAAGGC 62.792 60.000 0.00 0.00 0.00 4.35
81 82 0.320946 TTAGTCCCGGTTCGCAAAGG 60.321 55.000 0.00 0.00 0.00 3.11
82 83 1.463444 CTTTAGTCCCGGTTCGCAAAG 59.537 52.381 0.00 5.06 0.00 2.77
83 84 1.515081 CTTTAGTCCCGGTTCGCAAA 58.485 50.000 0.00 0.00 0.00 3.68
84 85 0.320946 CCTTTAGTCCCGGTTCGCAA 60.321 55.000 0.00 0.00 0.00 4.85
85 86 1.294138 CCTTTAGTCCCGGTTCGCA 59.706 57.895 0.00 0.00 0.00 5.10
86 87 2.104859 GCCTTTAGTCCCGGTTCGC 61.105 63.158 0.00 0.00 0.00 4.70
87 88 1.449070 GGCCTTTAGTCCCGGTTCG 60.449 63.158 0.00 0.00 0.00 3.95
88 89 1.077930 GGGCCTTTAGTCCCGGTTC 60.078 63.158 0.84 0.00 32.00 3.62
89 90 1.212250 ATGGGCCTTTAGTCCCGGTT 61.212 55.000 4.53 0.00 45.60 4.44
90 91 1.212250 AATGGGCCTTTAGTCCCGGT 61.212 55.000 4.53 0.00 45.60 5.28
91 92 0.033503 AAATGGGCCTTTAGTCCCGG 60.034 55.000 4.53 0.00 45.60 5.73
92 93 1.749063 GAAAATGGGCCTTTAGTCCCG 59.251 52.381 4.53 0.00 45.60 5.14
93 94 3.101643 AGAAAATGGGCCTTTAGTCCC 57.898 47.619 4.53 0.00 42.93 4.46
94 95 3.952323 GGTAGAAAATGGGCCTTTAGTCC 59.048 47.826 4.53 1.12 0.00 3.85
95 96 4.595986 TGGTAGAAAATGGGCCTTTAGTC 58.404 43.478 4.53 6.39 0.00 2.59
96 97 4.044191 ACTGGTAGAAAATGGGCCTTTAGT 59.956 41.667 4.53 0.24 0.00 2.24
97 98 4.399303 CACTGGTAGAAAATGGGCCTTTAG 59.601 45.833 4.53 0.00 0.00 1.85
98 99 4.202631 ACACTGGTAGAAAATGGGCCTTTA 60.203 41.667 4.53 0.00 0.00 1.85
99 100 3.165071 CACTGGTAGAAAATGGGCCTTT 58.835 45.455 4.53 0.76 0.00 3.11
100 101 2.110011 ACACTGGTAGAAAATGGGCCTT 59.890 45.455 4.53 0.00 0.00 4.35
101 102 1.710809 ACACTGGTAGAAAATGGGCCT 59.289 47.619 4.53 0.00 0.00 5.19
102 103 2.215942 ACACTGGTAGAAAATGGGCC 57.784 50.000 0.00 0.00 0.00 5.80
113 114 0.981183 CCAAGGGTGCTACACTGGTA 59.019 55.000 0.00 0.00 28.25 3.25
114 115 0.766674 TCCAAGGGTGCTACACTGGT 60.767 55.000 4.90 0.00 28.25 4.00
115 116 0.620556 ATCCAAGGGTGCTACACTGG 59.379 55.000 0.00 0.00 28.25 4.00
116 117 2.496899 AATCCAAGGGTGCTACACTG 57.503 50.000 0.00 0.00 28.25 3.66
117 118 3.182152 ACTAATCCAAGGGTGCTACACT 58.818 45.455 0.00 0.00 29.33 3.55
118 119 3.629142 ACTAATCCAAGGGTGCTACAC 57.371 47.619 0.00 0.00 0.00 2.90
119 120 3.329520 ACAACTAATCCAAGGGTGCTACA 59.670 43.478 0.00 0.00 0.00 2.74
120 121 3.939592 GACAACTAATCCAAGGGTGCTAC 59.060 47.826 0.00 0.00 0.00 3.58
121 122 3.369052 CGACAACTAATCCAAGGGTGCTA 60.369 47.826 0.00 0.00 0.00 3.49
122 123 2.615493 CGACAACTAATCCAAGGGTGCT 60.615 50.000 0.00 0.00 0.00 4.40
123 124 1.737793 CGACAACTAATCCAAGGGTGC 59.262 52.381 0.00 0.00 0.00 5.01
124 125 2.742053 CACGACAACTAATCCAAGGGTG 59.258 50.000 0.00 0.00 0.00 4.61
125 126 2.874457 GCACGACAACTAATCCAAGGGT 60.874 50.000 0.00 0.00 0.00 4.34
126 127 1.737793 GCACGACAACTAATCCAAGGG 59.262 52.381 0.00 0.00 0.00 3.95
127 128 2.422597 TGCACGACAACTAATCCAAGG 58.577 47.619 0.00 0.00 0.00 3.61
128 129 3.120199 CCTTGCACGACAACTAATCCAAG 60.120 47.826 0.00 0.00 33.68 3.61
129 130 2.811431 CCTTGCACGACAACTAATCCAA 59.189 45.455 0.00 0.00 33.68 3.53
130 131 2.037902 TCCTTGCACGACAACTAATCCA 59.962 45.455 0.00 0.00 33.68 3.41
131 132 2.695359 TCCTTGCACGACAACTAATCC 58.305 47.619 0.00 0.00 33.68 3.01
132 133 3.000322 CGATCCTTGCACGACAACTAATC 60.000 47.826 0.00 0.00 33.68 1.75
133 134 2.930040 CGATCCTTGCACGACAACTAAT 59.070 45.455 0.00 0.00 33.68 1.73
134 135 2.333926 CGATCCTTGCACGACAACTAA 58.666 47.619 0.00 0.00 33.68 2.24
135 136 1.403647 CCGATCCTTGCACGACAACTA 60.404 52.381 0.00 0.00 33.68 2.24
136 137 0.670546 CCGATCCTTGCACGACAACT 60.671 55.000 0.00 0.00 33.68 3.16
137 138 1.787847 CCGATCCTTGCACGACAAC 59.212 57.895 0.00 0.00 33.68 3.32
138 139 2.032634 GCCGATCCTTGCACGACAA 61.033 57.895 0.00 0.00 36.62 3.18
139 140 1.600511 TAGCCGATCCTTGCACGACA 61.601 55.000 0.00 0.00 0.00 4.35
140 141 0.872021 CTAGCCGATCCTTGCACGAC 60.872 60.000 0.00 0.00 0.00 4.34
141 142 1.437573 CTAGCCGATCCTTGCACGA 59.562 57.895 0.00 0.00 0.00 4.35
142 143 2.240500 GCTAGCCGATCCTTGCACG 61.241 63.158 2.29 0.00 34.43 5.34
143 144 0.744414 TTGCTAGCCGATCCTTGCAC 60.744 55.000 13.29 0.00 41.84 4.57
144 145 0.035534 TTTGCTAGCCGATCCTTGCA 60.036 50.000 13.29 4.50 40.76 4.08
145 146 0.378610 GTTTGCTAGCCGATCCTTGC 59.621 55.000 13.29 0.00 34.78 4.01
146 147 1.667724 CAGTTTGCTAGCCGATCCTTG 59.332 52.381 13.29 0.00 0.00 3.61
147 148 1.279271 ACAGTTTGCTAGCCGATCCTT 59.721 47.619 13.29 0.00 0.00 3.36
148 149 0.905357 ACAGTTTGCTAGCCGATCCT 59.095 50.000 13.29 0.00 0.00 3.24
149 150 1.291132 GACAGTTTGCTAGCCGATCC 58.709 55.000 13.29 0.00 0.00 3.36
150 151 0.924090 CGACAGTTTGCTAGCCGATC 59.076 55.000 13.29 0.27 0.00 3.69
151 152 0.246635 ACGACAGTTTGCTAGCCGAT 59.753 50.000 13.29 0.00 0.00 4.18
152 153 0.666274 CACGACAGTTTGCTAGCCGA 60.666 55.000 13.29 0.00 0.00 5.54
153 154 1.781555 CACGACAGTTTGCTAGCCG 59.218 57.895 13.29 9.00 0.00 5.52
154 155 1.497722 GCACGACAGTTTGCTAGCC 59.502 57.895 13.29 0.00 35.74 3.93
155 156 1.130613 CGCACGACAGTTTGCTAGC 59.869 57.895 8.10 8.10 36.54 3.42
156 157 1.693467 TACGCACGACAGTTTGCTAG 58.307 50.000 0.00 0.00 36.54 3.42
157 158 2.137129 TTACGCACGACAGTTTGCTA 57.863 45.000 0.00 0.00 36.54 3.49
158 159 1.260561 CTTTACGCACGACAGTTTGCT 59.739 47.619 0.00 0.00 36.54 3.91
159 160 1.004292 ACTTTACGCACGACAGTTTGC 60.004 47.619 0.00 0.00 35.26 3.68
160 161 3.488310 ACTACTTTACGCACGACAGTTTG 59.512 43.478 0.00 0.00 0.00 2.93
161 162 3.709987 ACTACTTTACGCACGACAGTTT 58.290 40.909 0.00 0.00 0.00 2.66
162 163 3.360249 ACTACTTTACGCACGACAGTT 57.640 42.857 0.00 0.00 0.00 3.16
163 164 3.360249 AACTACTTTACGCACGACAGT 57.640 42.857 0.00 0.00 0.00 3.55
164 165 3.121126 CCAAACTACTTTACGCACGACAG 60.121 47.826 0.00 0.00 0.00 3.51
165 166 2.796031 CCAAACTACTTTACGCACGACA 59.204 45.455 0.00 0.00 0.00 4.35
166 167 2.796593 ACCAAACTACTTTACGCACGAC 59.203 45.455 0.00 0.00 0.00 4.34
167 168 3.096489 ACCAAACTACTTTACGCACGA 57.904 42.857 0.00 0.00 0.00 4.35
168 169 4.970472 TTACCAAACTACTTTACGCACG 57.030 40.909 0.00 0.00 0.00 5.34
169 170 6.291067 ACTTTACCAAACTACTTTACGCAC 57.709 37.500 0.00 0.00 0.00 5.34
170 171 8.334632 GTTTACTTTACCAAACTACTTTACGCA 58.665 33.333 0.00 0.00 32.96 5.24
171 172 8.551205 AGTTTACTTTACCAAACTACTTTACGC 58.449 33.333 0.00 0.00 41.86 4.42
179 180 8.261349 TGGGAGTAGTTTACTTTACCAAACTA 57.739 34.615 3.46 3.46 41.86 2.24
180 181 7.140522 TGGGAGTAGTTTACTTTACCAAACT 57.859 36.000 5.20 5.20 44.81 2.66
181 182 7.500227 ACTTGGGAGTAGTTTACTTTACCAAAC 59.500 37.037 15.38 0.00 41.89 2.93
182 183 7.499895 CACTTGGGAGTAGTTTACTTTACCAAA 59.500 37.037 15.38 3.81 41.89 3.28
183 184 6.993902 CACTTGGGAGTAGTTTACTTTACCAA 59.006 38.462 14.52 14.52 41.10 3.67
184 185 6.464749 CCACTTGGGAGTAGTTTACTTTACCA 60.465 42.308 0.00 0.00 39.59 3.25
185 186 5.936372 CCACTTGGGAGTAGTTTACTTTACC 59.064 44.000 0.00 0.00 39.59 2.85
202 203 1.276622 AGCTGGTACTACCCACTTGG 58.723 55.000 2.59 0.00 37.50 3.61
203 204 2.699954 CAAGCTGGTACTACCCACTTG 58.300 52.381 16.95 16.95 37.50 3.16
204 205 1.003233 GCAAGCTGGTACTACCCACTT 59.997 52.381 2.59 3.79 37.50 3.16
205 206 0.613777 GCAAGCTGGTACTACCCACT 59.386 55.000 2.59 0.00 37.50 4.00
206 207 0.323629 TGCAAGCTGGTACTACCCAC 59.676 55.000 2.59 0.00 37.50 4.61
207 208 1.285280 ATGCAAGCTGGTACTACCCA 58.715 50.000 2.59 0.00 37.50 4.51
208 209 2.420058 AATGCAAGCTGGTACTACCC 57.580 50.000 2.59 0.00 37.50 3.69
209 210 4.138487 ACTAATGCAAGCTGGTACTACC 57.862 45.455 0.00 0.00 39.22 3.18
210 211 4.745620 GCTACTAATGCAAGCTGGTACTAC 59.254 45.833 0.00 0.00 33.40 2.73
211 212 4.202223 GGCTACTAATGCAAGCTGGTACTA 60.202 45.833 7.24 0.00 36.48 1.82
212 213 3.432326 GGCTACTAATGCAAGCTGGTACT 60.432 47.826 7.24 0.00 36.48 2.73
213 214 2.872858 GGCTACTAATGCAAGCTGGTAC 59.127 50.000 7.24 0.00 36.48 3.34
214 215 2.771943 AGGCTACTAATGCAAGCTGGTA 59.228 45.455 7.24 0.00 36.48 3.25
215 216 1.561542 AGGCTACTAATGCAAGCTGGT 59.438 47.619 7.24 0.00 36.48 4.00
216 217 2.338577 AGGCTACTAATGCAAGCTGG 57.661 50.000 7.24 0.00 36.48 4.85
217 218 4.065321 ACTAGGCTACTAATGCAAGCTG 57.935 45.455 7.24 1.83 36.48 4.24
218 219 4.282195 CCTACTAGGCTACTAATGCAAGCT 59.718 45.833 7.24 0.00 36.48 3.74
219 220 4.039366 ACCTACTAGGCTACTAATGCAAGC 59.961 45.833 1.55 0.00 39.63 4.01
220 221 5.533482 CACCTACTAGGCTACTAATGCAAG 58.467 45.833 1.55 0.00 39.63 4.01
221 222 4.202223 GCACCTACTAGGCTACTAATGCAA 60.202 45.833 1.55 0.00 39.63 4.08
222 223 3.321111 GCACCTACTAGGCTACTAATGCA 59.679 47.826 1.55 0.00 39.63 3.96
223 224 3.574826 AGCACCTACTAGGCTACTAATGC 59.425 47.826 1.55 3.13 39.63 3.56
224 225 4.083217 CGAGCACCTACTAGGCTACTAATG 60.083 50.000 1.55 0.00 39.63 1.90
225 226 4.073549 CGAGCACCTACTAGGCTACTAAT 58.926 47.826 1.55 0.00 39.63 1.73
226 227 3.118112 ACGAGCACCTACTAGGCTACTAA 60.118 47.826 1.55 0.00 39.63 2.24
227 228 2.437281 ACGAGCACCTACTAGGCTACTA 59.563 50.000 1.55 0.00 39.63 1.82
228 229 1.212441 ACGAGCACCTACTAGGCTACT 59.788 52.381 1.55 0.00 39.63 2.57
229 230 1.677942 ACGAGCACCTACTAGGCTAC 58.322 55.000 1.55 0.00 39.63 3.58
230 231 2.431954 AACGAGCACCTACTAGGCTA 57.568 50.000 1.55 0.00 39.63 3.93
231 232 2.299521 CTAACGAGCACCTACTAGGCT 58.700 52.381 1.55 0.00 39.63 4.58
232 233 2.778187 CTAACGAGCACCTACTAGGC 57.222 55.000 1.55 0.00 39.63 3.93
244 245 1.983605 CCACGTACTTGTGCTAACGAG 59.016 52.381 0.23 0.00 42.77 4.18
245 246 1.336148 CCCACGTACTTGTGCTAACGA 60.336 52.381 0.23 0.00 38.55 3.85
246 247 1.065358 CCCACGTACTTGTGCTAACG 58.935 55.000 0.00 0.00 38.55 3.18
247 248 1.796459 CACCCACGTACTTGTGCTAAC 59.204 52.381 0.00 0.00 38.55 2.34
248 249 2.157834 CACCCACGTACTTGTGCTAA 57.842 50.000 0.00 0.00 38.55 3.09
249 250 3.898380 CACCCACGTACTTGTGCTA 57.102 52.632 0.00 0.00 38.55 3.49
250 251 4.771127 CACCCACGTACTTGTGCT 57.229 55.556 0.00 0.00 38.55 4.40
251 252 2.943653 GCACCCACGTACTTGTGC 59.056 61.111 12.91 12.91 46.09 4.57
252 253 1.000506 ACTAGCACCCACGTACTTGTG 59.999 52.381 0.00 0.00 39.60 3.33
253 254 1.335145 ACTAGCACCCACGTACTTGT 58.665 50.000 0.00 0.00 0.00 3.16
254 255 2.450609 AACTAGCACCCACGTACTTG 57.549 50.000 0.00 0.00 0.00 3.16
255 256 2.762745 CAAACTAGCACCCACGTACTT 58.237 47.619 0.00 0.00 0.00 2.24
256 257 1.607251 GCAAACTAGCACCCACGTACT 60.607 52.381 0.00 0.00 0.00 2.73
257 258 0.794473 GCAAACTAGCACCCACGTAC 59.206 55.000 0.00 0.00 0.00 3.67
258 259 0.393448 TGCAAACTAGCACCCACGTA 59.607 50.000 0.00 0.00 40.11 3.57
259 260 1.147376 TGCAAACTAGCACCCACGT 59.853 52.632 0.00 0.00 40.11 4.49
260 261 4.057224 TGCAAACTAGCACCCACG 57.943 55.556 0.00 0.00 40.11 4.94
278 279 3.560481 GCTAGTGTACGAGCATCTACTGA 59.440 47.826 11.47 0.00 42.91 3.41
279 280 3.312697 TGCTAGTGTACGAGCATCTACTG 59.687 47.826 14.46 0.00 46.87 2.74
291 292 4.628074 TCTTTCCACTTGTGCTAGTGTAC 58.372 43.478 11.50 0.00 43.17 2.90
296 297 5.514279 CAACTTTCTTTCCACTTGTGCTAG 58.486 41.667 0.00 0.00 0.00 3.42
327 328 0.322816 TCTTGGTCCGTACGCTAGGT 60.323 55.000 10.49 0.00 0.00 3.08
329 330 1.093159 AGTCTTGGTCCGTACGCTAG 58.907 55.000 10.49 3.17 0.00 3.42
330 331 0.806868 CAGTCTTGGTCCGTACGCTA 59.193 55.000 10.49 0.00 0.00 4.26
331 332 1.585006 CAGTCTTGGTCCGTACGCT 59.415 57.895 10.49 0.00 0.00 5.07
332 333 1.445582 CCAGTCTTGGTCCGTACGC 60.446 63.158 10.49 0.00 39.79 4.42
333 334 0.815734 ATCCAGTCTTGGTCCGTACG 59.184 55.000 8.69 8.69 45.26 3.67
334 335 1.202268 CGATCCAGTCTTGGTCCGTAC 60.202 57.143 0.00 0.00 45.26 3.67
340 341 1.137872 GCTGATCGATCCAGTCTTGGT 59.862 52.381 22.31 0.00 45.26 3.67
354 355 4.012374 TGAGAGTTCAAATTGGGCTGATC 58.988 43.478 0.00 0.00 0.00 2.92
355 356 4.038271 TGAGAGTTCAAATTGGGCTGAT 57.962 40.909 0.00 0.00 0.00 2.90
356 357 3.507162 TGAGAGTTCAAATTGGGCTGA 57.493 42.857 0.00 0.00 0.00 4.26
357 358 3.571401 AGTTGAGAGTTCAAATTGGGCTG 59.429 43.478 0.00 0.00 44.49 4.85
358 359 3.823304 GAGTTGAGAGTTCAAATTGGGCT 59.177 43.478 0.00 0.00 44.49 5.19
359 360 3.823304 AGAGTTGAGAGTTCAAATTGGGC 59.177 43.478 0.00 0.00 44.49 5.36
369 370 2.288518 GCCGACTTGAGAGTTGAGAGTT 60.289 50.000 0.00 0.00 39.29 3.01
372 373 1.000163 GTGCCGACTTGAGAGTTGAGA 60.000 52.381 0.00 0.00 39.29 3.27
377 378 1.668294 CCAGTGCCGACTTGAGAGT 59.332 57.895 0.00 0.00 39.32 3.24
379 380 2.210013 AGCCAGTGCCGACTTGAGA 61.210 57.895 0.00 0.00 38.69 3.27
382 383 2.031012 TCAGCCAGTGCCGACTTG 59.969 61.111 0.00 0.00 38.69 3.16
407 409 4.358494 TCGCTTTTGAACCTTTTTCGAA 57.642 36.364 0.00 0.00 0.00 3.71
415 417 4.074970 ACTGATGAATCGCTTTTGAACCT 58.925 39.130 0.00 0.00 0.00 3.50
417 419 5.288543 AGACTGATGAATCGCTTTTGAAC 57.711 39.130 0.00 0.00 0.00 3.18
419 421 5.240891 AGAAGACTGATGAATCGCTTTTGA 58.759 37.500 0.00 0.00 0.00 2.69
420 422 5.542616 AGAAGACTGATGAATCGCTTTTG 57.457 39.130 0.00 0.00 0.00 2.44
421 423 6.402222 ACTAGAAGACTGATGAATCGCTTTT 58.598 36.000 0.00 0.00 0.00 2.27
423 425 5.590530 ACTAGAAGACTGATGAATCGCTT 57.409 39.130 0.00 0.00 0.00 4.68
424 426 6.701145 TTACTAGAAGACTGATGAATCGCT 57.299 37.500 0.00 0.00 0.00 4.93
446 448 7.647318 GCATGTTTTCCAAAATCCGAAATTTTT 59.353 29.630 5.93 0.00 0.00 1.94
481 483 5.047943 CCGGCTTACAGCATATACTAAGTCT 60.048 44.000 0.00 0.00 44.75 3.24
508 514 2.280797 ACAATGGCGTGTGCTCGT 60.281 55.556 0.00 0.00 42.25 4.18
533 543 4.627058 TGATCATACGTATTGGCACGAAT 58.373 39.130 5.03 0.00 44.69 3.34
540 550 6.873605 TCCAATTAGCTGATCATACGTATTGG 59.126 38.462 22.49 22.49 40.34 3.16
550 569 5.422012 TGACAGTACTCCAATTAGCTGATCA 59.578 40.000 0.00 0.00 0.00 2.92
552 571 5.939764 TGACAGTACTCCAATTAGCTGAT 57.060 39.130 0.00 0.00 0.00 2.90
580 599 1.086696 ACGTAAGCGCGGACTAGTAA 58.913 50.000 8.83 0.00 42.83 2.24
584 618 0.240678 TGAAACGTAAGCGCGGACTA 59.759 50.000 8.83 0.00 42.83 2.59
588 622 2.472934 GGTGAAACGTAAGCGCGG 59.527 61.111 8.83 0.00 42.83 6.46
589 623 2.093246 CGGTGAAACGTAAGCGCG 59.907 61.111 0.00 0.00 42.83 6.86
598 632 1.258720 GTACACGTGAACCGGTGAAAC 59.741 52.381 25.01 6.14 42.24 2.78
733 783 0.681887 TGCGACTGGACCGGATAAGA 60.682 55.000 9.46 0.00 0.00 2.10
859 958 6.158175 CGTACCTACTACGTATATGGACAC 57.842 45.833 12.73 9.45 42.90 3.67
892 1028 7.677745 AGGAGGATATAGAATTGTATCAGCTGT 59.322 37.037 14.67 3.75 31.16 4.40
896 1032 8.601047 TGGAGGAGGATATAGAATTGTATCAG 57.399 38.462 0.00 0.00 31.16 2.90
923 1066 0.478072 TGGCACAAAGTGGAGTGGAT 59.522 50.000 0.00 0.00 36.29 3.41
924 1067 1.919012 TGGCACAAAGTGGAGTGGA 59.081 52.632 0.00 0.00 36.29 4.02
925 1068 4.577152 TGGCACAAAGTGGAGTGG 57.423 55.556 0.00 0.00 36.29 4.00
953 1099 1.597445 GCTAAGGCGAGTACGTAGCAG 60.597 57.143 0.00 0.00 39.60 4.24
954 1100 0.379669 GCTAAGGCGAGTACGTAGCA 59.620 55.000 0.00 0.00 39.60 3.49
955 1101 0.317687 GGCTAAGGCGAGTACGTAGC 60.318 60.000 0.00 0.00 39.32 3.58
956 1102 1.019673 TGGCTAAGGCGAGTACGTAG 58.980 55.000 0.00 0.00 41.98 3.51
957 1103 1.605710 GATGGCTAAGGCGAGTACGTA 59.394 52.381 0.00 0.00 41.98 3.57
958 1104 0.384669 GATGGCTAAGGCGAGTACGT 59.615 55.000 0.00 0.00 41.98 3.57
960 1106 2.030096 GGTAGATGGCTAAGGCGAGTAC 60.030 54.545 0.00 0.00 39.81 2.73
1130 1328 3.423154 CAAACGGGGCTGAGACGC 61.423 66.667 0.00 0.00 0.00 5.19
1164 1362 2.956964 GCGCATCGGTTCTCCTCG 60.957 66.667 0.30 0.00 0.00 4.63
1236 1437 3.642778 GAGCCCGTACTTGCGCTCA 62.643 63.158 9.73 0.00 45.64 4.26
1243 1444 0.032017 AGGATCTGGAGCCCGTACTT 60.032 55.000 0.91 0.00 37.67 2.24
1388 1601 1.599047 CGGTTGAGGAGGCTCATGT 59.401 57.895 17.69 0.00 32.91 3.21
1397 1610 0.902531 GATGAGGTTCCGGTTGAGGA 59.097 55.000 0.00 0.00 38.79 3.71
1531 1763 1.887198 CAAGGCGTACCCTCTATCGAT 59.113 52.381 2.16 2.16 45.62 3.59
1532 1764 1.315690 CAAGGCGTACCCTCTATCGA 58.684 55.000 3.68 0.00 45.62 3.59
1537 1769 3.771160 CGGCAAGGCGTACCCTCT 61.771 66.667 7.94 0.00 45.62 3.69
1538 1770 4.832608 CCGGCAAGGCGTACCCTC 62.833 72.222 14.89 0.00 45.62 4.30
1753 1998 3.831642 TTGCATGGCCCCATAGATAAT 57.168 42.857 0.00 0.00 34.91 1.28
1762 2012 2.574450 CCATTAATTTTGCATGGCCCC 58.426 47.619 0.00 0.00 31.32 5.80
1919 2494 4.384247 CGCTATTTTGTTTCGCATTTCCAA 59.616 37.500 0.00 0.00 0.00 3.53
1928 2504 2.334454 GTCAACGCGCTATTTTGTTTCG 59.666 45.455 5.73 0.00 0.00 3.46
1934 2510 2.412089 GTCAGAGTCAACGCGCTATTTT 59.588 45.455 5.73 0.00 0.00 1.82
2041 2649 0.741221 GGATGGCTGACTGAACGGAC 60.741 60.000 0.00 0.00 0.00 4.79
2046 2654 1.685224 GTGGGGATGGCTGACTGAA 59.315 57.895 0.00 0.00 0.00 3.02
2094 2720 2.433994 GCAGGAGCAGGAGGAGGAG 61.434 68.421 0.00 0.00 41.58 3.69
2095 2721 2.364842 GCAGGAGCAGGAGGAGGA 60.365 66.667 0.00 0.00 41.58 3.71
2096 2722 2.365370 AGCAGGAGCAGGAGGAGG 60.365 66.667 0.00 0.00 45.49 4.30
2177 2806 2.496070 CGGGTAACTGATCTTCAGGTCA 59.504 50.000 9.18 0.00 41.32 4.02
2281 2913 2.202932 CCCCGAACATGGAGCGAG 60.203 66.667 0.00 0.00 0.00 5.03
2441 3079 0.603975 GGACGAGCAGCTCCTTGTTT 60.604 55.000 17.16 0.00 29.63 2.83
2468 3106 2.045926 GTCGCCTCCTTGGTGCAT 60.046 61.111 0.00 0.00 45.61 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.