Multiple sequence alignment - TraesCS3D01G044600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G044600 chr3D 100.000 2948 0 0 1 2948 17324215 17321268 0.000000e+00 5445.0
1 TraesCS3D01G044600 chr3D 97.007 2773 77 5 1 2771 17289076 17286308 0.000000e+00 4656.0
2 TraesCS3D01G044600 chr3D 97.733 750 17 0 2022 2771 17238611 17237862 0.000000e+00 1291.0
3 TraesCS3D01G044600 chr3D 96.101 513 18 2 1 512 17239555 17239044 0.000000e+00 835.0
4 TraesCS3D01G044600 chr3D 89.950 199 19 1 1 198 179343064 179343262 3.770000e-64 255.0
5 TraesCS3D01G044600 chr3D 90.446 157 12 1 582 735 87926000 87926156 1.390000e-48 204.0
6 TraesCS3D01G044600 chr3D 100.000 66 0 0 2883 2948 17286285 17286220 3.990000e-24 122.0
7 TraesCS3D01G044600 chr3D 98.485 66 1 0 2883 2948 17237839 17237774 1.860000e-22 117.0
8 TraesCS3D01G044600 chr3B 94.883 2775 130 11 1 2771 24834835 24832069 0.000000e+00 4327.0
9 TraesCS3D01G044600 chr3B 98.361 61 1 0 2883 2943 24832046 24831986 1.120000e-19 108.0
10 TraesCS3D01G044600 chr5D 91.064 2585 188 18 197 2771 35479358 35476807 0.000000e+00 3454.0
11 TraesCS3D01G044600 chr5D 90.955 199 17 1 1 198 207769210 207769012 1.740000e-67 267.0
12 TraesCS3D01G044600 chr5D 89.394 66 7 0 2883 2948 35476784 35476719 1.880000e-12 84.2
13 TraesCS3D01G044600 chrUn 92.215 2068 149 9 197 2257 334202217 334200155 0.000000e+00 2916.0
14 TraesCS3D01G044600 chrUn 91.463 1757 142 5 1018 2767 324174626 324176381 0.000000e+00 2407.0
15 TraesCS3D01G044600 chrUn 91.606 822 63 5 197 1016 373420164 373419347 0.000000e+00 1131.0
16 TraesCS3D01G044600 chr2B 91.371 197 15 2 1 196 557110173 557109978 4.840000e-68 268.0
17 TraesCS3D01G044600 chr2B 90.404 198 17 2 1 196 517513032 517513229 2.910000e-65 259.0
18 TraesCS3D01G044600 chr1A 90.863 197 17 1 1 196 126032073 126031877 2.250000e-66 263.0
19 TraesCS3D01G044600 chr7A 90.355 197 17 2 1 196 490417176 490417371 1.050000e-64 257.0
20 TraesCS3D01G044600 chr2A 90.323 155 14 1 582 735 746803159 746803313 4.980000e-48 202.0
21 TraesCS3D01G044600 chr2A 89.552 67 7 0 209 275 695776648 695776582 5.240000e-13 86.1
22 TraesCS3D01G044600 chr2A 89.552 67 7 0 209 275 695952364 695952298 5.240000e-13 86.1
23 TraesCS3D01G044600 chr1D 89.506 162 14 1 582 740 449595569 449595408 4.980000e-48 202.0
24 TraesCS3D01G044600 chr4D 86.170 188 18 5 544 728 3590441 3590623 2.320000e-46 196.0
25 TraesCS3D01G044600 chr7B 87.574 169 17 2 582 747 583373014 583372847 3.000000e-45 193.0
26 TraesCS3D01G044600 chr6B 87.574 169 15 4 582 746 132353577 132353411 1.080000e-44 191.0
27 TraesCS3D01G044600 chr4B 85.876 177 19 4 562 735 320946519 320946692 1.800000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G044600 chr3D 17321268 17324215 2947 True 5445.000000 5445 100.000000 1 2948 1 chr3D.!!$R1 2947
1 TraesCS3D01G044600 chr3D 17286220 17289076 2856 True 2389.000000 4656 98.503500 1 2948 2 chr3D.!!$R3 2947
2 TraesCS3D01G044600 chr3D 17237774 17239555 1781 True 747.666667 1291 97.439667 1 2948 3 chr3D.!!$R2 2947
3 TraesCS3D01G044600 chr3B 24831986 24834835 2849 True 2217.500000 4327 96.622000 1 2943 2 chr3B.!!$R1 2942
4 TraesCS3D01G044600 chr5D 35476719 35479358 2639 True 1769.100000 3454 90.229000 197 2948 2 chr5D.!!$R2 2751
5 TraesCS3D01G044600 chrUn 334200155 334202217 2062 True 2916.000000 2916 92.215000 197 2257 1 chrUn.!!$R1 2060
6 TraesCS3D01G044600 chrUn 324174626 324176381 1755 False 2407.000000 2407 91.463000 1018 2767 1 chrUn.!!$F1 1749
7 TraesCS3D01G044600 chrUn 373419347 373420164 817 True 1131.000000 1131 91.606000 197 1016 1 chrUn.!!$R2 819

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
30 31 7.801783 AGAAACTTTTGCGCTTAGTAACATAAC 59.198 33.333 9.73 0.0 0.00 1.89 F
230 234 7.930513 TGTACTCGCTCTATTCACAAATATG 57.069 36.000 0.00 0.0 0.00 1.78 F
1359 1382 1.002257 ATGCGGGCATCTGTTCACA 60.002 52.632 0.00 0.0 29.42 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1054 1067 0.251354 GATGAGCAGCTTGAGGGTCA 59.749 55.0 6.18 6.18 44.54 4.02 R
1526 1549 0.331278 TGTTGGACATGGGGGTGATC 59.669 55.0 0.00 0.00 0.00 2.92 R
2771 2801 0.102481 TTAAGCGGTGCTCTCGATCC 59.898 55.0 0.00 0.00 38.25 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.801783 AGAAACTTTTGCGCTTAGTAACATAAC 59.198 33.333 9.73 0.00 0.00 1.89
133 137 9.612066 AATTTTTCAGAATTTTTGGAGTAGCAA 57.388 25.926 0.00 0.00 0.00 3.91
230 234 7.930513 TGTACTCGCTCTATTCACAAATATG 57.069 36.000 0.00 0.00 0.00 1.78
594 601 9.439500 TTGTATAATTACTTACTGCCTTCGTTT 57.561 29.630 0.00 0.00 0.00 3.60
1359 1382 1.002257 ATGCGGGCATCTGTTCACA 60.002 52.632 0.00 0.00 29.42 3.58
1526 1549 3.068732 ACACTATCATGGATGACCTCACG 59.931 47.826 0.00 0.00 40.03 4.35
1841 1869 4.437682 TCCAGTGGTGAGAAGAAACAAT 57.562 40.909 9.54 0.00 0.00 2.71
1913 1941 2.833794 TGGAGAATAAGCGTATGCACC 58.166 47.619 10.11 7.08 46.23 5.01
2123 2152 8.442632 AATTCATCAAATCGTCTATGTCATGT 57.557 30.769 0.00 0.00 0.00 3.21
2215 2244 2.756760 GACGGGTACTACTGTCATCCAA 59.243 50.000 6.30 0.00 44.35 3.53
2322 2351 9.316730 CATTAACTAAAATCATTGGAACCCATG 57.683 33.333 0.00 0.00 31.53 3.66
2425 2454 1.153881 GGAGTACGCGTGGGAACTC 60.154 63.158 24.85 24.85 38.08 3.01
2453 2482 7.847096 TCATACACACCTCATACATAAAGTGT 58.153 34.615 0.00 0.00 44.95 3.55
2606 2635 8.764524 TTAAAGTTGCAATACACAAAGTGTTT 57.235 26.923 0.59 0.00 45.08 2.83
2667 2696 7.254455 GCCAATACATAAAGTGCTAGTACACAG 60.254 40.741 13.75 1.23 43.23 3.66
2732 2762 3.343941 AGGTGTTAAATAGAAGGCGCA 57.656 42.857 10.83 0.00 0.00 6.09
2771 2801 7.987458 AGTGTTGGATCATATACAAAGGTACTG 59.013 37.037 0.00 0.00 40.86 2.74
2772 2802 7.226720 GTGTTGGATCATATACAAAGGTACTGG 59.773 40.741 0.00 0.00 40.86 4.00
2773 2803 7.126573 TGTTGGATCATATACAAAGGTACTGGA 59.873 37.037 0.00 0.00 40.86 3.86
2775 2805 7.907389 TGGATCATATACAAAGGTACTGGATC 58.093 38.462 0.00 0.00 40.86 3.36
2776 2806 7.036220 GGATCATATACAAAGGTACTGGATCG 58.964 42.308 0.00 0.00 40.86 3.69
2777 2807 7.093902 GGATCATATACAAAGGTACTGGATCGA 60.094 40.741 0.00 0.00 40.86 3.59
2778 2808 7.215719 TCATATACAAAGGTACTGGATCGAG 57.784 40.000 2.78 2.78 40.86 4.04
2780 2810 5.776173 ATACAAAGGTACTGGATCGAGAG 57.224 43.478 12.14 0.00 40.86 3.20
2781 2811 2.166664 ACAAAGGTACTGGATCGAGAGC 59.833 50.000 12.14 5.20 40.86 4.09
2782 2812 2.145397 AAGGTACTGGATCGAGAGCA 57.855 50.000 12.14 0.00 40.86 4.26
2783 2813 1.394618 AGGTACTGGATCGAGAGCAC 58.605 55.000 12.14 6.12 37.18 4.40
2785 2815 0.029567 GTACTGGATCGAGAGCACCG 59.970 60.000 12.14 0.00 0.00 4.94
2786 2816 1.725557 TACTGGATCGAGAGCACCGC 61.726 60.000 12.14 0.00 0.00 5.68
2787 2817 2.755876 TGGATCGAGAGCACCGCT 60.756 61.111 0.00 0.00 43.88 5.52
2788 2818 2.290122 CTGGATCGAGAGCACCGCTT 62.290 60.000 0.00 0.00 39.88 4.68
2789 2819 1.035385 TGGATCGAGAGCACCGCTTA 61.035 55.000 0.00 0.00 39.88 3.09
2791 2821 1.269831 GGATCGAGAGCACCGCTTAAT 60.270 52.381 0.00 0.00 39.88 1.40
2792 2822 1.789464 GATCGAGAGCACCGCTTAATG 59.211 52.381 0.00 0.00 39.88 1.90
2793 2823 0.806102 TCGAGAGCACCGCTTAATGC 60.806 55.000 0.00 0.00 39.88 3.56
2794 2824 1.083806 CGAGAGCACCGCTTAATGCA 61.084 55.000 1.90 0.00 44.59 3.96
2795 2825 1.303309 GAGAGCACCGCTTAATGCAT 58.697 50.000 0.00 0.00 44.59 3.96
2796 2826 2.483876 GAGAGCACCGCTTAATGCATA 58.516 47.619 0.00 0.00 44.59 3.14
2797 2827 2.478134 GAGAGCACCGCTTAATGCATAG 59.522 50.000 0.00 0.00 44.59 2.23
2798 2828 0.947244 AGCACCGCTTAATGCATAGC 59.053 50.000 10.86 10.86 44.59 2.97
2799 2829 0.947244 GCACCGCTTAATGCATAGCT 59.053 50.000 17.22 0.00 41.65 3.32
2800 2830 2.143122 GCACCGCTTAATGCATAGCTA 58.857 47.619 17.22 0.00 41.65 3.32
2801 2831 2.158449 GCACCGCTTAATGCATAGCTAG 59.842 50.000 17.22 11.68 41.65 3.42
2802 2832 3.653344 CACCGCTTAATGCATAGCTAGA 58.347 45.455 17.22 0.00 43.06 2.43
2803 2833 3.677121 CACCGCTTAATGCATAGCTAGAG 59.323 47.826 17.22 7.64 43.06 2.43
2804 2834 3.257393 CCGCTTAATGCATAGCTAGAGG 58.743 50.000 17.22 11.23 43.06 3.69
2805 2835 2.670414 CGCTTAATGCATAGCTAGAGGC 59.330 50.000 17.22 3.74 43.06 4.70
2806 2836 2.670414 GCTTAATGCATAGCTAGAGGCG 59.330 50.000 13.21 0.00 43.29 5.52
2807 2837 3.615110 GCTTAATGCATAGCTAGAGGCGA 60.615 47.826 13.21 0.00 43.29 5.54
2808 2838 5.437072 GCTTAATGCATAGCTAGAGGCGAG 61.437 50.000 13.21 2.32 43.29 5.03
2816 2846 2.714259 CTAGAGGCGAGCTAGCTGT 58.286 57.895 24.99 3.28 37.29 4.40
2817 2847 0.591170 CTAGAGGCGAGCTAGCTGTC 59.409 60.000 24.99 15.86 37.29 3.51
2818 2848 0.107165 TAGAGGCGAGCTAGCTGTCA 60.107 55.000 24.99 0.00 37.29 3.58
2819 2849 0.754957 AGAGGCGAGCTAGCTGTCAT 60.755 55.000 24.99 10.99 37.29 3.06
2820 2850 0.597118 GAGGCGAGCTAGCTGTCATG 60.597 60.000 24.99 7.53 37.29 3.07
2821 2851 1.593750 GGCGAGCTAGCTGTCATGG 60.594 63.158 24.99 0.00 37.29 3.66
2822 2852 1.142748 GCGAGCTAGCTGTCATGGT 59.857 57.895 24.99 0.00 0.00 3.55
2823 2853 0.460987 GCGAGCTAGCTGTCATGGTT 60.461 55.000 24.99 0.00 0.00 3.67
2824 2854 1.202417 GCGAGCTAGCTGTCATGGTTA 60.202 52.381 24.99 0.00 0.00 2.85
2825 2855 2.464865 CGAGCTAGCTGTCATGGTTAC 58.535 52.381 24.99 1.97 0.00 2.50
2826 2856 2.799917 CGAGCTAGCTGTCATGGTTACC 60.800 54.545 24.99 1.40 0.00 2.85
2827 2857 2.168521 GAGCTAGCTGTCATGGTTACCA 59.831 50.000 24.99 6.53 38.19 3.25
2828 2858 2.774234 AGCTAGCTGTCATGGTTACCAT 59.226 45.455 18.57 11.67 46.37 3.55
2829 2859 3.967326 AGCTAGCTGTCATGGTTACCATA 59.033 43.478 18.57 0.54 43.15 2.74
2830 2860 4.594920 AGCTAGCTGTCATGGTTACCATAT 59.405 41.667 18.57 0.00 43.15 1.78
2831 2861 5.072329 AGCTAGCTGTCATGGTTACCATATT 59.928 40.000 18.57 0.00 43.15 1.28
2832 2862 5.765182 GCTAGCTGTCATGGTTACCATATTT 59.235 40.000 17.31 2.89 43.15 1.40
2833 2863 6.934645 GCTAGCTGTCATGGTTACCATATTTA 59.065 38.462 17.31 3.41 43.15 1.40
2834 2864 7.095187 GCTAGCTGTCATGGTTACCATATTTAC 60.095 40.741 17.31 12.69 43.15 2.01
2835 2865 6.900194 AGCTGTCATGGTTACCATATTTACT 58.100 36.000 17.31 9.25 43.15 2.24
2836 2866 8.029782 AGCTGTCATGGTTACCATATTTACTA 57.970 34.615 17.31 4.23 43.15 1.82
2837 2867 8.660435 AGCTGTCATGGTTACCATATTTACTAT 58.340 33.333 17.31 0.00 43.15 2.12
2838 2868 8.936864 GCTGTCATGGTTACCATATTTACTATC 58.063 37.037 17.31 3.88 43.15 2.08
2839 2869 9.140286 CTGTCATGGTTACCATATTTACTATCG 57.860 37.037 17.31 0.70 43.15 2.92
2840 2870 8.644216 TGTCATGGTTACCATATTTACTATCGT 58.356 33.333 17.31 0.00 43.15 3.73
2841 2871 9.136952 GTCATGGTTACCATATTTACTATCGTC 57.863 37.037 17.31 0.00 43.15 4.20
2842 2872 8.024865 TCATGGTTACCATATTTACTATCGTCG 58.975 37.037 17.31 0.00 43.15 5.12
2843 2873 6.680810 TGGTTACCATATTTACTATCGTCGG 58.319 40.000 0.00 0.00 0.00 4.79
2844 2874 5.574443 GGTTACCATATTTACTATCGTCGGC 59.426 44.000 0.00 0.00 0.00 5.54
2845 2875 3.829948 ACCATATTTACTATCGTCGGCG 58.170 45.455 1.15 1.15 39.92 6.46
2856 2886 1.847818 TCGTCGGCGAATCCTAATTG 58.152 50.000 10.97 0.00 44.92 2.32
2857 2887 1.135527 TCGTCGGCGAATCCTAATTGT 59.864 47.619 10.97 0.00 44.92 2.71
2858 2888 2.358582 TCGTCGGCGAATCCTAATTGTA 59.641 45.455 10.97 0.00 44.92 2.41
2859 2889 3.117794 CGTCGGCGAATCCTAATTGTAA 58.882 45.455 12.92 0.00 41.33 2.41
2860 2890 3.552699 CGTCGGCGAATCCTAATTGTAAA 59.447 43.478 12.92 0.00 41.33 2.01
2861 2891 4.033129 CGTCGGCGAATCCTAATTGTAAAA 59.967 41.667 12.92 0.00 41.33 1.52
2862 2892 5.446206 CGTCGGCGAATCCTAATTGTAAAAA 60.446 40.000 12.92 0.00 41.33 1.94
2863 2893 5.735892 GTCGGCGAATCCTAATTGTAAAAAC 59.264 40.000 12.92 0.00 0.00 2.43
2864 2894 5.411977 TCGGCGAATCCTAATTGTAAAAACA 59.588 36.000 7.35 0.00 0.00 2.83
2865 2895 6.094325 TCGGCGAATCCTAATTGTAAAAACAT 59.906 34.615 7.35 0.00 0.00 2.71
2866 2896 7.280428 TCGGCGAATCCTAATTGTAAAAACATA 59.720 33.333 7.35 0.00 0.00 2.29
2867 2897 7.911205 CGGCGAATCCTAATTGTAAAAACATAA 59.089 33.333 0.00 0.00 0.00 1.90
2868 2898 9.016623 GGCGAATCCTAATTGTAAAAACATAAC 57.983 33.333 0.00 0.00 0.00 1.89
2869 2899 9.016623 GCGAATCCTAATTGTAAAAACATAACC 57.983 33.333 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.738124 TCACGTTCTAGAAAGCAGATCAG 58.262 43.478 17.03 0.00 0.00 2.90
230 234 9.434420 TCCATGTTGAAATATCCAAAACATTTC 57.566 29.630 0.00 0.00 38.94 2.17
371 378 4.846779 TTAAAGTTGGCACACTTCATCC 57.153 40.909 13.03 0.00 39.29 3.51
575 582 8.788325 ATTTAGAAACGAAGGCAGTAAGTAAT 57.212 30.769 0.00 0.00 0.00 1.89
636 643 7.759465 AGAGTGTAGATTCATTCATTTTGCTG 58.241 34.615 0.00 0.00 0.00 4.41
962 975 5.995565 GCCCACGGCCTCATATATATATA 57.004 43.478 0.00 4.92 44.06 0.86
963 976 4.891992 GCCCACGGCCTCATATATATAT 57.108 45.455 0.00 0.00 44.06 0.86
1054 1067 0.251354 GATGAGCAGCTTGAGGGTCA 59.749 55.000 6.18 6.18 44.54 4.02
1217 1230 3.904800 TCCATTTTCTCGGCACTATCA 57.095 42.857 0.00 0.00 0.00 2.15
1359 1382 0.617820 AGTGGGTAAGATGTCGCCCT 60.618 55.000 0.00 0.00 41.59 5.19
1526 1549 0.331278 TGTTGGACATGGGGGTGATC 59.669 55.000 0.00 0.00 0.00 2.92
1998 2026 4.630894 TGCTAGCATTATTTTTCCCACG 57.369 40.909 14.93 0.00 0.00 4.94
2123 2152 7.287005 CCAGGTGATAAGAATACTAGTGGTGTA 59.713 40.741 5.39 0.00 0.00 2.90
2215 2244 6.041979 AGGCACCATTTAAATTTCAAGTGAGT 59.958 34.615 0.00 0.00 0.00 3.41
2425 2454 8.417106 ACTTTATGTATGAGGTGTGTATGAGAG 58.583 37.037 0.00 0.00 0.00 3.20
2453 2482 7.421599 CACTTTGTGATTGTTGTATAACCACA 58.578 34.615 8.22 8.22 35.85 4.17
2454 2483 6.362283 GCACTTTGTGATTGTTGTATAACCAC 59.638 38.462 1.52 2.20 35.23 4.16
2582 2611 8.179148 CAAACACTTTGTGTATTGCAACTTTA 57.821 30.769 0.00 0.00 46.79 1.85
2667 2696 8.893219 TGGTATCATCTCAACACTTTATCATC 57.107 34.615 0.00 0.00 0.00 2.92
2732 2762 8.641498 ATGATCCAACACTTTCTTGTAATTCT 57.359 30.769 0.00 0.00 0.00 2.40
2771 2801 0.102481 TTAAGCGGTGCTCTCGATCC 59.898 55.000 0.00 0.00 38.25 3.36
2772 2802 1.789464 CATTAAGCGGTGCTCTCGATC 59.211 52.381 0.00 0.00 38.25 3.69
2773 2803 1.858091 CATTAAGCGGTGCTCTCGAT 58.142 50.000 0.00 0.00 38.25 3.59
2775 2805 1.638467 GCATTAAGCGGTGCTCTCG 59.362 57.895 0.00 0.00 38.25 4.04
2782 2812 6.886034 GCCTCTAGCTATGCATTAAGCGGT 62.886 50.000 14.30 2.81 43.63 5.68
2783 2813 4.471344 GCCTCTAGCTATGCATTAAGCGG 61.471 52.174 14.30 10.96 43.63 5.52
2785 2815 2.670414 CGCCTCTAGCTATGCATTAAGC 59.330 50.000 12.69 12.69 41.49 3.09
2786 2816 4.172505 CTCGCCTCTAGCTATGCATTAAG 58.827 47.826 3.54 0.00 40.39 1.85
2787 2817 3.615110 GCTCGCCTCTAGCTATGCATTAA 60.615 47.826 3.54 0.00 40.39 1.40
2788 2818 2.094494 GCTCGCCTCTAGCTATGCATTA 60.094 50.000 3.54 0.00 40.39 1.90
2789 2819 1.337635 GCTCGCCTCTAGCTATGCATT 60.338 52.381 3.54 0.00 40.39 3.56
2791 2821 1.662608 GCTCGCCTCTAGCTATGCA 59.337 57.895 0.00 0.00 40.39 3.96
2792 2822 4.569341 GCTCGCCTCTAGCTATGC 57.431 61.111 0.00 0.00 40.39 3.14
2798 2828 0.591170 GACAGCTAGCTCGCCTCTAG 59.409 60.000 16.15 3.33 37.25 2.43
2799 2829 0.107165 TGACAGCTAGCTCGCCTCTA 60.107 55.000 16.15 0.00 0.00 2.43
2800 2830 0.754957 ATGACAGCTAGCTCGCCTCT 60.755 55.000 16.15 0.00 0.00 3.69
2801 2831 0.597118 CATGACAGCTAGCTCGCCTC 60.597 60.000 16.15 7.71 0.00 4.70
2802 2832 1.440893 CATGACAGCTAGCTCGCCT 59.559 57.895 16.15 0.00 0.00 5.52
2803 2833 1.593750 CCATGACAGCTAGCTCGCC 60.594 63.158 16.15 7.42 0.00 5.54
2804 2834 0.460987 AACCATGACAGCTAGCTCGC 60.461 55.000 16.15 10.38 0.00 5.03
2805 2835 2.464865 GTAACCATGACAGCTAGCTCG 58.535 52.381 16.15 13.11 0.00 5.03
2806 2836 2.168521 TGGTAACCATGACAGCTAGCTC 59.831 50.000 16.15 5.54 0.00 4.09
2807 2837 2.187958 TGGTAACCATGACAGCTAGCT 58.812 47.619 12.68 12.68 0.00 3.32
2808 2838 2.691409 TGGTAACCATGACAGCTAGC 57.309 50.000 6.62 6.62 0.00 3.42
2809 2839 8.150945 AGTAAATATGGTAACCATGACAGCTAG 58.849 37.037 0.00 0.00 44.84 3.42
2810 2840 8.029782 AGTAAATATGGTAACCATGACAGCTA 57.970 34.615 0.00 0.00 44.84 3.32
2811 2841 6.900194 AGTAAATATGGTAACCATGACAGCT 58.100 36.000 0.00 0.00 44.84 4.24
2812 2842 8.848474 ATAGTAAATATGGTAACCATGACAGC 57.152 34.615 0.00 0.00 44.84 4.40
2813 2843 9.140286 CGATAGTAAATATGGTAACCATGACAG 57.860 37.037 0.00 0.00 44.84 3.51
2838 2868 1.567504 ACAATTAGGATTCGCCGACG 58.432 50.000 0.00 0.00 43.43 5.12
2839 2869 5.473796 TTTTACAATTAGGATTCGCCGAC 57.526 39.130 0.00 0.00 43.43 4.79
2840 2870 5.411977 TGTTTTTACAATTAGGATTCGCCGA 59.588 36.000 0.00 0.00 43.43 5.54
2841 2871 5.632959 TGTTTTTACAATTAGGATTCGCCG 58.367 37.500 0.00 0.00 43.43 6.46
2842 2872 9.016623 GTTATGTTTTTACAATTAGGATTCGCC 57.983 33.333 0.00 0.00 0.00 5.54
2843 2873 9.016623 GGTTATGTTTTTACAATTAGGATTCGC 57.983 33.333 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.