Multiple sequence alignment - TraesCS3D01G043800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G043800 chr3D 100.000 5447 0 0 1 5447 16635541 16630095 0.000000e+00 10059.0
1 TraesCS3D01G043800 chr3D 91.398 93 7 1 1 92 16639219 16639311 5.730000e-25 126.0
2 TraesCS3D01G043800 chr3B 90.671 4470 280 61 331 4722 24061113 24056703 0.000000e+00 5818.0
3 TraesCS3D01G043800 chr3B 88.566 551 32 14 1138 1658 20999704 21000253 1.650000e-179 640.0
4 TraesCS3D01G043800 chr3B 88.532 218 20 4 5234 5447 24056454 24056238 5.410000e-65 259.0
5 TraesCS3D01G043800 chr3B 94.068 118 7 0 121 238 24069299 24069182 4.330000e-41 180.0
6 TraesCS3D01G043800 chr3A 88.592 2840 162 69 93 2877 19969620 19972352 0.000000e+00 3301.0
7 TraesCS3D01G043800 chr3A 86.763 1594 152 33 3647 5189 19973250 19974835 0.000000e+00 1720.0
8 TraesCS3D01G043800 chr3A 89.254 335 33 3 2965 3297 19972521 19972854 3.040000e-112 416.0
9 TraesCS3D01G043800 chr3A 89.894 188 18 1 5259 5446 19974977 19975163 1.960000e-59 241.0
10 TraesCS3D01G043800 chr3A 81.283 187 27 7 3320 3499 19972964 19973149 1.580000e-30 145.0
11 TraesCS3D01G043800 chr1B 86.688 1277 132 20 3333 4579 170582887 170584155 0.000000e+00 1382.0
12 TraesCS3D01G043800 chr1B 87.500 544 43 16 1138 1658 170577616 170578157 6.040000e-169 604.0
13 TraesCS3D01G043800 chr1B 86.070 402 36 10 2919 3301 170578453 170578853 1.090000e-111 414.0
14 TraesCS3D01G043800 chr1B 90.698 43 4 0 4820 4862 352388885 352388927 2.120000e-04 58.4
15 TraesCS3D01G043800 chr2B 85.915 1278 129 26 3333 4579 603917372 603918629 0.000000e+00 1315.0
16 TraesCS3D01G043800 chr2B 87.067 549 30 18 1138 1658 603915990 603916525 2.830000e-162 582.0
17 TraesCS3D01G043800 chr2B 89.157 332 30 6 2965 3292 603916882 603917211 5.080000e-110 409.0
18 TraesCS3D01G043800 chr2B 86.207 58 6 2 4814 4870 446046991 446046935 1.640000e-05 62.1
19 TraesCS3D01G043800 chr5A 84.122 1247 135 32 2919 4108 708969227 708967987 0.000000e+00 1147.0
20 TraesCS3D01G043800 chr5A 84.375 384 37 15 1138 1521 708974007 708973647 6.710000e-94 355.0
21 TraesCS3D01G043800 chr5A 85.714 308 22 16 1140 1430 708967642 708967944 6.850000e-79 305.0
22 TraesCS3D01G043800 chr5A 94.872 39 2 0 1541 1579 708973644 708973606 1.640000e-05 62.1
23 TraesCS3D01G043800 chr5A 81.944 72 7 5 4990 5058 451884570 451884502 7.620000e-04 56.5
24 TraesCS3D01G043800 chr1A 91.056 805 68 2 3776 4579 586115802 586115001 0.000000e+00 1085.0
25 TraesCS3D01G043800 chr1A 83.174 838 92 26 2990 3784 586117794 586116963 0.000000e+00 721.0
26 TraesCS3D01G043800 chr1A 89.580 547 29 16 1138 1658 586120875 586120331 0.000000e+00 669.0
27 TraesCS3D01G043800 chr2A 91.370 533 27 4 1138 1658 27111788 27111263 0.000000e+00 712.0
28 TraesCS3D01G043800 chr2A 87.923 414 21 13 1273 1658 546771812 546772224 1.380000e-125 460.0
29 TraesCS3D01G043800 chr5D 93.684 95 4 2 1 93 33446542 33446448 2.050000e-29 141.0
30 TraesCS3D01G043800 chr5D 94.595 37 2 0 4834 4870 503180907 503180943 2.120000e-04 58.4
31 TraesCS3D01G043800 chr6D 93.407 91 4 2 4 92 384355332 384355242 3.420000e-27 134.0
32 TraesCS3D01G043800 chr4D 93.407 91 4 2 4 92 15054732 15054642 3.420000e-27 134.0
33 TraesCS3D01G043800 chr4D 91.489 94 6 2 1 92 15060138 15060231 1.590000e-25 128.0
34 TraesCS3D01G043800 chr4A 91.489 94 6 2 1 92 43355246 43355153 1.590000e-25 128.0
35 TraesCS3D01G043800 chr7A 90.426 94 7 2 1 92 538244077 538244170 7.410000e-24 122.0
36 TraesCS3D01G043800 chr1D 88.298 94 9 2 1 92 458343745 458343652 1.600000e-20 111.0
37 TraesCS3D01G043800 chr1D 94.595 37 1 1 4834 4870 51766881 51766846 7.620000e-04 56.5
38 TraesCS3D01G043800 chr7D 97.297 37 0 1 4834 4870 15401843 15401878 1.640000e-05 62.1
39 TraesCS3D01G043800 chr6A 88.000 50 5 1 4821 4870 18838734 18838686 2.120000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G043800 chr3D 16630095 16635541 5446 True 10059.000000 10059 100.000000 1 5447 1 chr3D.!!$R1 5446
1 TraesCS3D01G043800 chr3B 24056238 24061113 4875 True 3038.500000 5818 89.601500 331 5447 2 chr3B.!!$R2 5116
2 TraesCS3D01G043800 chr3B 20999704 21000253 549 False 640.000000 640 88.566000 1138 1658 1 chr3B.!!$F1 520
3 TraesCS3D01G043800 chr3A 19969620 19975163 5543 False 1164.600000 3301 87.157200 93 5446 5 chr3A.!!$F1 5353
4 TraesCS3D01G043800 chr1B 170582887 170584155 1268 False 1382.000000 1382 86.688000 3333 4579 1 chr1B.!!$F1 1246
5 TraesCS3D01G043800 chr1B 170577616 170578853 1237 False 509.000000 604 86.785000 1138 3301 2 chr1B.!!$F3 2163
6 TraesCS3D01G043800 chr2B 603915990 603918629 2639 False 768.666667 1315 87.379667 1138 4579 3 chr2B.!!$F1 3441
7 TraesCS3D01G043800 chr5A 708967987 708969227 1240 True 1147.000000 1147 84.122000 2919 4108 1 chr5A.!!$R2 1189
8 TraesCS3D01G043800 chr1A 586115001 586120875 5874 True 825.000000 1085 87.936667 1138 4579 3 chr1A.!!$R1 3441
9 TraesCS3D01G043800 chr2A 27111263 27111788 525 True 712.000000 712 91.370000 1138 1658 1 chr2A.!!$R1 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.039180 GGGATTTGGAGTTCGGGGTT 59.961 55.0 0.00 0.0 0.00 4.11 F
542 555 0.105453 TAGCTAGCCCTTCTCCCCAG 60.105 60.0 12.13 0.0 0.00 4.45 F
2058 2143 0.394899 GGCCAGATGTTCCAAGGAGG 60.395 60.0 0.00 0.0 39.47 4.30 F
2440 2528 0.110644 CGACGGCAAAGTTTCAGAGC 60.111 55.0 0.00 0.0 0.00 4.09 F
2839 2927 0.940126 CTTGCTGCTTCGTGTTGTCT 59.060 50.0 0.00 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1857 1942 0.109458 TCGTGTGTGCATCGTAGGAC 60.109 55.000 0.00 0.00 0.00 3.85 R
2421 2509 0.110644 GCTCTGAAACTTTGCCGTCG 60.111 55.000 0.00 0.00 0.00 5.12 R
3978 7748 0.528017 TACTGTCCAGAAGCAGCTCG 59.472 55.000 0.00 0.00 36.26 5.03 R
4128 7898 0.657368 CGAACAGAAAGTTGGTGCGC 60.657 55.000 0.00 0.00 41.51 6.09 R
4747 8532 1.066858 ACAACATACACAGGAGCTCCG 60.067 52.381 26.95 22.44 42.08 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.642171 TAGAGAGTTGGGGTGTGGAT 57.358 50.000 0.00 0.00 0.00 3.41
21 22 1.747444 AGAGAGTTGGGGTGTGGATT 58.253 50.000 0.00 0.00 0.00 3.01
22 23 2.065799 AGAGAGTTGGGGTGTGGATTT 58.934 47.619 0.00 0.00 0.00 2.17
23 24 2.040412 AGAGAGTTGGGGTGTGGATTTC 59.960 50.000 0.00 0.00 0.00 2.17
24 25 1.780309 AGAGTTGGGGTGTGGATTTCA 59.220 47.619 0.00 0.00 0.00 2.69
25 26 2.162681 GAGTTGGGGTGTGGATTTCAG 58.837 52.381 0.00 0.00 0.00 3.02
26 27 1.203050 AGTTGGGGTGTGGATTTCAGG 60.203 52.381 0.00 0.00 0.00 3.86
27 28 0.114168 TTGGGGTGTGGATTTCAGGG 59.886 55.000 0.00 0.00 0.00 4.45
28 29 0.774096 TGGGGTGTGGATTTCAGGGA 60.774 55.000 0.00 0.00 0.00 4.20
29 30 0.631212 GGGGTGTGGATTTCAGGGAT 59.369 55.000 0.00 0.00 0.00 3.85
30 31 1.007118 GGGGTGTGGATTTCAGGGATT 59.993 52.381 0.00 0.00 0.00 3.01
31 32 2.559705 GGGGTGTGGATTTCAGGGATTT 60.560 50.000 0.00 0.00 0.00 2.17
32 33 2.497273 GGGTGTGGATTTCAGGGATTTG 59.503 50.000 0.00 0.00 0.00 2.32
33 34 2.497273 GGTGTGGATTTCAGGGATTTGG 59.503 50.000 0.00 0.00 0.00 3.28
34 35 3.430453 GTGTGGATTTCAGGGATTTGGA 58.570 45.455 0.00 0.00 0.00 3.53
35 36 3.445096 GTGTGGATTTCAGGGATTTGGAG 59.555 47.826 0.00 0.00 0.00 3.86
36 37 3.075882 TGTGGATTTCAGGGATTTGGAGT 59.924 43.478 0.00 0.00 0.00 3.85
37 38 4.089361 GTGGATTTCAGGGATTTGGAGTT 58.911 43.478 0.00 0.00 0.00 3.01
38 39 4.158579 GTGGATTTCAGGGATTTGGAGTTC 59.841 45.833 0.00 0.00 0.00 3.01
39 40 3.378427 GGATTTCAGGGATTTGGAGTTCG 59.622 47.826 0.00 0.00 0.00 3.95
40 41 2.489938 TTCAGGGATTTGGAGTTCGG 57.510 50.000 0.00 0.00 0.00 4.30
41 42 0.618458 TCAGGGATTTGGAGTTCGGG 59.382 55.000 0.00 0.00 0.00 5.14
42 43 0.394352 CAGGGATTTGGAGTTCGGGG 60.394 60.000 0.00 0.00 0.00 5.73
43 44 0.845102 AGGGATTTGGAGTTCGGGGT 60.845 55.000 0.00 0.00 0.00 4.95
44 45 0.039180 GGGATTTGGAGTTCGGGGTT 59.961 55.000 0.00 0.00 0.00 4.11
45 46 1.282738 GGGATTTGGAGTTCGGGGTTA 59.717 52.381 0.00 0.00 0.00 2.85
46 47 2.291089 GGGATTTGGAGTTCGGGGTTAA 60.291 50.000 0.00 0.00 0.00 2.01
47 48 3.423749 GGATTTGGAGTTCGGGGTTAAA 58.576 45.455 0.00 0.00 0.00 1.52
48 49 3.827876 GGATTTGGAGTTCGGGGTTAAAA 59.172 43.478 0.00 0.00 0.00 1.52
49 50 4.321452 GGATTTGGAGTTCGGGGTTAAAAC 60.321 45.833 0.00 0.00 0.00 2.43
59 60 1.783434 GGTTAAAACCGACGAGGCG 59.217 57.895 0.00 0.00 46.52 5.52
60 61 0.945743 GGTTAAAACCGACGAGGCGT 60.946 55.000 0.00 0.00 46.52 5.68
61 62 1.668628 GGTTAAAACCGACGAGGCGTA 60.669 52.381 0.00 0.00 46.52 4.42
62 63 1.386748 GTTAAAACCGACGAGGCGTAC 59.613 52.381 0.00 0.00 46.52 3.67
63 64 0.454285 TAAAACCGACGAGGCGTACG 60.454 55.000 11.84 11.84 46.52 3.67
64 65 2.128853 AAAACCGACGAGGCGTACGA 62.129 55.000 21.65 0.00 46.52 3.43
65 66 2.128853 AAACCGACGAGGCGTACGAA 62.129 55.000 21.65 0.00 46.52 3.85
66 67 1.926511 AACCGACGAGGCGTACGAAT 61.927 55.000 21.65 5.81 46.52 3.34
67 68 1.226491 CCGACGAGGCGTACGAATT 60.226 57.895 21.65 2.47 41.37 2.17
68 69 1.198608 CCGACGAGGCGTACGAATTC 61.199 60.000 21.65 11.40 41.37 2.17
69 70 0.521867 CGACGAGGCGTACGAATTCA 60.522 55.000 21.65 0.00 41.37 2.57
70 71 1.621107 GACGAGGCGTACGAATTCAA 58.379 50.000 21.65 0.00 41.37 2.69
71 72 1.582502 GACGAGGCGTACGAATTCAAG 59.417 52.381 21.65 5.26 41.37 3.02
72 73 0.921347 CGAGGCGTACGAATTCAAGG 59.079 55.000 21.65 0.00 0.00 3.61
73 74 1.734707 CGAGGCGTACGAATTCAAGGT 60.735 52.381 21.65 0.00 0.00 3.50
74 75 2.344025 GAGGCGTACGAATTCAAGGTT 58.656 47.619 21.65 0.00 0.00 3.50
75 76 2.740447 GAGGCGTACGAATTCAAGGTTT 59.260 45.455 21.65 0.00 0.00 3.27
76 77 3.928375 GAGGCGTACGAATTCAAGGTTTA 59.072 43.478 21.65 0.00 0.00 2.01
77 78 4.317488 AGGCGTACGAATTCAAGGTTTAA 58.683 39.130 21.65 0.00 0.00 1.52
78 79 4.756135 AGGCGTACGAATTCAAGGTTTAAA 59.244 37.500 21.65 0.00 0.00 1.52
79 80 5.239087 AGGCGTACGAATTCAAGGTTTAAAA 59.761 36.000 21.65 0.00 0.00 1.52
80 81 6.072342 AGGCGTACGAATTCAAGGTTTAAAAT 60.072 34.615 21.65 0.00 0.00 1.82
81 82 7.119553 AGGCGTACGAATTCAAGGTTTAAAATA 59.880 33.333 21.65 0.00 0.00 1.40
82 83 7.911727 GGCGTACGAATTCAAGGTTTAAAATAT 59.088 33.333 21.65 0.00 0.00 1.28
83 84 9.919348 GCGTACGAATTCAAGGTTTAAAATATA 57.081 29.630 21.65 0.00 0.00 0.86
104 105 4.067944 ACTTTACTCTGGTCAGGGAGAT 57.932 45.455 4.68 0.00 34.11 2.75
113 114 0.970937 GTCAGGGAGATGGGTCGTGA 60.971 60.000 0.00 0.00 0.00 4.35
118 119 0.250513 GGAGATGGGTCGTGAAAGCT 59.749 55.000 0.00 0.00 0.00 3.74
122 123 0.739813 ATGGGTCGTGAAAGCTACGC 60.740 55.000 2.58 0.00 41.08 4.42
128 129 1.295423 GTGAAAGCTACGCAGGGGA 59.705 57.895 0.00 0.00 0.00 4.81
130 131 0.902984 TGAAAGCTACGCAGGGGAGA 60.903 55.000 0.00 0.00 0.00 3.71
205 206 4.897140 TGGCTTTTCCATCAATTTTCTGG 58.103 39.130 0.00 0.00 40.72 3.86
206 207 4.256110 GGCTTTTCCATCAATTTTCTGGG 58.744 43.478 0.00 0.00 34.01 4.45
207 208 3.686241 GCTTTTCCATCAATTTTCTGGGC 59.314 43.478 0.00 0.00 0.00 5.36
208 209 3.591196 TTTCCATCAATTTTCTGGGCG 57.409 42.857 0.00 0.00 0.00 6.13
209 210 2.214376 TCCATCAATTTTCTGGGCGT 57.786 45.000 0.00 0.00 0.00 5.68
210 211 2.524306 TCCATCAATTTTCTGGGCGTT 58.476 42.857 0.00 0.00 0.00 4.84
211 212 2.896685 TCCATCAATTTTCTGGGCGTTT 59.103 40.909 0.00 0.00 0.00 3.60
212 213 3.056891 TCCATCAATTTTCTGGGCGTTTC 60.057 43.478 0.00 0.00 0.00 2.78
213 214 3.056607 CCATCAATTTTCTGGGCGTTTCT 60.057 43.478 0.00 0.00 0.00 2.52
214 215 3.915437 TCAATTTTCTGGGCGTTTCTC 57.085 42.857 0.00 0.00 0.00 2.87
215 216 2.225491 TCAATTTTCTGGGCGTTTCTCG 59.775 45.455 0.00 0.00 43.12 4.04
262 263 2.520686 AATCTAAACGAAAAGCCGCG 57.479 45.000 0.00 0.00 0.00 6.46
268 269 2.499732 CGAAAAGCCGCGCACTTC 60.500 61.111 8.75 5.88 0.00 3.01
298 299 3.636231 CCCCCAACGGCACAGAGA 61.636 66.667 0.00 0.00 0.00 3.10
309 310 3.244422 ACGGCACAGAGAAATAACTCCAA 60.244 43.478 0.00 0.00 37.60 3.53
323 324 6.994421 ATAACTCCAAAACCAATTCCACTT 57.006 33.333 0.00 0.00 0.00 3.16
328 333 3.052036 CAAAACCAATTCCACTTGCTCG 58.948 45.455 0.00 0.00 0.00 5.03
357 362 3.929002 GCATCCAGCATTCCAGCA 58.071 55.556 0.00 0.00 44.79 4.41
367 372 1.850377 CATTCCAGCAGCTAGACTCG 58.150 55.000 0.00 0.00 0.00 4.18
374 379 1.226435 CAGCTAGACTCGCCACGAC 60.226 63.158 0.00 0.00 0.00 4.34
375 380 1.674651 AGCTAGACTCGCCACGACA 60.675 57.895 0.00 0.00 0.00 4.35
379 384 0.520404 TAGACTCGCCACGACAAGAC 59.480 55.000 0.00 0.00 0.00 3.01
388 393 1.901948 ACGACAAGACCTCCGAGCA 60.902 57.895 0.00 0.00 0.00 4.26
425 438 2.360350 CGTCCATGGCAACCAGCT 60.360 61.111 6.96 0.00 44.79 4.24
426 439 2.693762 CGTCCATGGCAACCAGCTG 61.694 63.158 6.96 6.78 44.79 4.24
432 445 3.608662 GGCAACCAGCTGCAGCAA 61.609 61.111 38.24 0.00 44.52 3.91
433 446 2.355481 GCAACCAGCTGCAGCAAC 60.355 61.111 38.24 17.54 45.16 4.17
435 448 1.007734 CAACCAGCTGCAGCAACAG 60.008 57.895 38.24 24.88 45.16 3.16
441 454 2.483745 CTGCAGCAACAGCCGATG 59.516 61.111 0.00 0.00 0.00 3.84
512 525 1.615883 ACTCACACCAGTAGCTCTGTG 59.384 52.381 10.86 7.56 42.19 3.66
518 531 2.039418 ACCAGTAGCTCTGTGTGAACA 58.961 47.619 10.86 0.00 42.19 3.18
520 533 2.408050 CAGTAGCTCTGTGTGAACACC 58.592 52.381 10.92 0.00 45.88 4.16
521 534 2.039418 AGTAGCTCTGTGTGAACACCA 58.961 47.619 10.92 2.15 45.88 4.17
522 535 2.434336 AGTAGCTCTGTGTGAACACCAA 59.566 45.455 10.92 0.00 45.88 3.67
524 537 3.769739 AGCTCTGTGTGAACACCAATA 57.230 42.857 10.92 0.00 45.88 1.90
525 538 3.668447 AGCTCTGTGTGAACACCAATAG 58.332 45.455 10.92 2.21 45.88 1.73
527 540 3.668447 CTCTGTGTGAACACCAATAGCT 58.332 45.455 10.92 0.00 45.88 3.32
528 541 4.820897 CTCTGTGTGAACACCAATAGCTA 58.179 43.478 10.92 0.00 45.88 3.32
529 542 4.820897 TCTGTGTGAACACCAATAGCTAG 58.179 43.478 10.92 0.00 45.88 3.42
530 543 3.334691 TGTGTGAACACCAATAGCTAGC 58.665 45.455 6.62 6.62 45.88 3.42
532 545 2.289565 GTGAACACCAATAGCTAGCCC 58.710 52.381 12.13 0.00 0.00 5.19
533 546 2.092914 GTGAACACCAATAGCTAGCCCT 60.093 50.000 12.13 0.00 0.00 5.19
535 548 3.206964 GAACACCAATAGCTAGCCCTTC 58.793 50.000 12.13 0.00 0.00 3.46
536 549 2.482494 ACACCAATAGCTAGCCCTTCT 58.518 47.619 12.13 0.00 0.00 2.85
540 553 1.349357 CAATAGCTAGCCCTTCTCCCC 59.651 57.143 12.13 0.00 0.00 4.81
541 554 0.568192 ATAGCTAGCCCTTCTCCCCA 59.432 55.000 12.13 0.00 0.00 4.96
542 555 0.105453 TAGCTAGCCCTTCTCCCCAG 60.105 60.000 12.13 0.00 0.00 4.45
600 624 3.194308 GAGAGAAGGCTGCTGCGC 61.194 66.667 0.00 0.00 40.82 6.09
884 915 1.593933 GTCGGCGAAAACAAGTACACA 59.406 47.619 12.92 0.00 0.00 3.72
887 918 2.032377 CGGCGAAAACAAGTACACACAT 60.032 45.455 0.00 0.00 0.00 3.21
888 919 3.551551 GGCGAAAACAAGTACACACATC 58.448 45.455 0.00 0.00 0.00 3.06
889 920 3.002862 GGCGAAAACAAGTACACACATCA 59.997 43.478 0.00 0.00 0.00 3.07
890 921 4.320202 GGCGAAAACAAGTACACACATCAT 60.320 41.667 0.00 0.00 0.00 2.45
891 922 4.846137 GCGAAAACAAGTACACACATCATC 59.154 41.667 0.00 0.00 0.00 2.92
892 923 5.382303 CGAAAACAAGTACACACATCATCC 58.618 41.667 0.00 0.00 0.00 3.51
893 924 5.616866 CGAAAACAAGTACACACATCATCCC 60.617 44.000 0.00 0.00 0.00 3.85
927 958 2.997897 AGCCGGACCTGACCTGAC 60.998 66.667 5.05 0.00 0.00 3.51
929 960 2.283966 CCGGACCTGACCTGACCT 60.284 66.667 0.00 0.00 0.00 3.85
930 961 2.650116 CCGGACCTGACCTGACCTG 61.650 68.421 0.00 0.00 0.00 4.00
931 962 1.606601 CGGACCTGACCTGACCTGA 60.607 63.158 0.00 0.00 0.00 3.86
932 963 1.878656 CGGACCTGACCTGACCTGAC 61.879 65.000 0.00 0.00 0.00 3.51
933 964 1.545706 GGACCTGACCTGACCTGACC 61.546 65.000 0.00 0.00 0.00 4.02
934 965 1.878656 GACCTGACCTGACCTGACCG 61.879 65.000 0.00 0.00 0.00 4.79
935 966 2.650116 CCTGACCTGACCTGACCGG 61.650 68.421 0.00 0.00 39.35 5.28
936 967 1.606601 CTGACCTGACCTGACCGGA 60.607 63.158 9.46 0.00 36.31 5.14
938 969 2.997897 ACCTGACCTGACCGGAGC 60.998 66.667 9.46 0.00 36.31 4.70
939 970 4.135153 CCTGACCTGACCGGAGCG 62.135 72.222 9.46 0.00 36.31 5.03
940 971 3.062466 CTGACCTGACCGGAGCGA 61.062 66.667 9.46 0.00 36.31 4.93
942 973 4.500116 GACCTGACCGGAGCGAGC 62.500 72.222 9.46 0.00 36.31 5.03
944 975 3.764466 CCTGACCGGAGCGAGCTT 61.764 66.667 9.46 0.00 33.16 3.74
945 976 2.202676 CTGACCGGAGCGAGCTTC 60.203 66.667 9.46 0.00 0.00 3.86
946 977 4.116328 TGACCGGAGCGAGCTTCG 62.116 66.667 18.09 18.09 44.16 3.79
1095 1134 1.374758 CGTGCTGTTCCACCTCCTC 60.375 63.158 0.00 0.00 32.10 3.71
1366 1426 0.980423 GAAGCAGAGGAAGGTGGAGT 59.020 55.000 0.00 0.00 0.00 3.85
1369 1429 1.251527 GCAGAGGAAGGTGGAGTCGA 61.252 60.000 0.00 0.00 0.00 4.20
1701 1777 0.666913 GCTCCGATAGCCTGTCGTTA 59.333 55.000 10.02 0.00 46.25 3.18
1874 1959 1.630148 GAGTCCTACGATGCACACAC 58.370 55.000 0.00 0.00 0.00 3.82
1951 2036 0.555769 TGGGGGAATGGGCAGTTATC 59.444 55.000 0.00 0.00 0.00 1.75
1969 2054 2.415010 CTGGGGTCAGATCGAGCG 59.585 66.667 0.00 0.00 43.49 5.03
2058 2143 0.394899 GGCCAGATGTTCCAAGGAGG 60.395 60.000 0.00 0.00 39.47 4.30
2219 2304 4.496670 GATGAGTTCGACCACCCG 57.503 61.111 0.00 0.00 0.00 5.28
2332 2417 1.225376 ACGCAAGAAAATCGACCGCA 61.225 50.000 0.00 0.00 43.62 5.69
2361 2449 1.546961 CCAGTAACAGAGGAGGTCGT 58.453 55.000 0.00 0.00 0.00 4.34
2418 2506 1.450312 GGTGTCCAGGGCTTCATCG 60.450 63.158 0.00 0.00 0.00 3.84
2421 2509 1.153349 GTCCAGGGCTTCATCGGAC 60.153 63.158 0.00 0.00 39.42 4.79
2422 2510 2.202932 CCAGGGCTTCATCGGACG 60.203 66.667 0.00 0.00 0.00 4.79
2423 2511 2.721167 CCAGGGCTTCATCGGACGA 61.721 63.158 0.00 0.00 0.00 4.20
2424 2512 1.519455 CAGGGCTTCATCGGACGAC 60.519 63.158 0.00 0.00 0.00 4.34
2440 2528 0.110644 CGACGGCAAAGTTTCAGAGC 60.111 55.000 0.00 0.00 0.00 4.09
2442 2530 1.537202 GACGGCAAAGTTTCAGAGCAT 59.463 47.619 0.00 0.00 0.00 3.79
2486 2574 1.127951 CGATACCGGTTGCACAAGAAC 59.872 52.381 15.04 0.00 0.00 3.01
2490 2578 2.829206 CGGTTGCACAAGAACGCCA 61.829 57.895 0.00 0.00 0.00 5.69
2491 2579 1.659794 GGTTGCACAAGAACGCCAT 59.340 52.632 0.00 0.00 0.00 4.40
2568 2656 7.123547 TCTGAGAAAGAGGAATTTAGGAGACTC 59.876 40.741 0.00 0.00 43.67 3.36
2585 2673 2.550180 GACTCCTGAAAGCAAAGGTGAC 59.450 50.000 0.00 0.00 34.94 3.67
2617 2705 3.369892 CCTGTCTGATAGGGTTGAACCAG 60.370 52.174 17.27 4.47 41.02 4.00
2706 2794 1.171308 CAAACACCTCAGCATCCCAG 58.829 55.000 0.00 0.00 0.00 4.45
2737 2825 3.853355 ATTCGGATTCATCAGCTCCTT 57.147 42.857 0.00 0.00 0.00 3.36
2784 2872 6.370453 TGATTCCAATGATCAATCACCTGAT 58.630 36.000 0.00 0.00 40.03 2.90
2794 2882 2.919229 CAATCACCTGATTTTCGCAAGC 59.081 45.455 0.00 0.00 42.41 4.01
2805 2893 1.075542 TTCGCAAGCGTTATCAGGTG 58.924 50.000 14.57 0.00 40.74 4.00
2831 2919 2.350522 AGATGTTACCTTGCTGCTTCG 58.649 47.619 0.00 0.00 0.00 3.79
2839 2927 0.940126 CTTGCTGCTTCGTGTTGTCT 59.060 50.000 0.00 0.00 0.00 3.41
2943 3103 1.824230 TCCATGCCTGGTACATTTTGC 59.176 47.619 7.98 0.00 43.61 3.68
2999 5329 7.119699 TGCCTGATCTTTACTGAAGTAATTGTG 59.880 37.037 3.84 0.00 39.89 3.33
3033 5364 2.749076 TGACCTGCATTCATTGTACTGC 59.251 45.455 0.00 0.00 35.21 4.40
3039 5370 2.476185 GCATTCATTGTACTGCGGTCAC 60.476 50.000 0.00 0.00 0.00 3.67
3041 5372 3.945981 TTCATTGTACTGCGGTCACTA 57.054 42.857 0.00 0.00 0.00 2.74
3347 5891 1.688735 AGCTTGGTTGAAAGGCCTTTC 59.311 47.619 39.96 39.96 46.71 2.62
3348 5892 1.688735 GCTTGGTTGAAAGGCCTTTCT 59.311 47.619 42.87 22.77 46.67 2.52
3349 5893 2.546584 GCTTGGTTGAAAGGCCTTTCTG 60.547 50.000 42.87 29.30 46.67 3.02
3350 5894 2.746279 TGGTTGAAAGGCCTTTCTGA 57.254 45.000 42.87 32.76 46.67 3.27
3354 5902 3.636764 GGTTGAAAGGCCTTTCTGAAAGA 59.363 43.478 42.87 27.61 46.67 2.52
3371 5919 5.308825 TGAAAGAGAAAAGTGGGCTAGAAG 58.691 41.667 0.00 0.00 0.00 2.85
3400 5948 5.708697 ACTTCCCCCTTTATTTGTTTACTCG 59.291 40.000 0.00 0.00 0.00 4.18
3486 6044 1.882198 CGTAGAACGCATTTGGCAAG 58.118 50.000 0.00 0.00 45.17 4.01
3531 6097 3.011818 TCTTGACGCTGTATCGAGGTAA 58.988 45.455 0.00 0.00 0.00 2.85
3536 6102 2.100916 ACGCTGTATCGAGGTAAGCATT 59.899 45.455 11.28 0.00 33.41 3.56
3595 6161 6.868864 ACATGTATCGCTGATATTGGAACTAC 59.131 38.462 0.00 0.00 0.00 2.73
3605 6178 9.765795 GCTGATATTGGAACTACTATAACAGTT 57.234 33.333 0.00 0.00 38.80 3.16
3654 6239 8.836268 TCGGCTTAAATTAACACTTCTTAGAA 57.164 30.769 0.00 0.00 0.00 2.10
3758 6347 6.705825 GGTAATGCATGGTTTCTTCTTTTGTT 59.294 34.615 0.00 0.00 0.00 2.83
3978 7748 2.068277 GAGAGGCCATTGCGAATGCC 62.068 60.000 5.01 8.69 41.78 4.40
3996 7766 1.291588 CGAGCTGCTTCTGGACAGT 59.708 57.895 2.53 0.00 36.26 3.55
4128 7898 3.381272 TCAAGGAAGAAAACAACTGCCAG 59.619 43.478 0.00 0.00 35.61 4.85
4140 7910 2.832661 TGCCAGCGCACCAACTTT 60.833 55.556 11.47 0.00 41.12 2.66
4290 8060 1.880340 CGGCAACTGGAGCGAGATC 60.880 63.158 0.00 0.00 0.00 2.75
4301 8071 3.809423 CGAGATCTCGTCGGACCA 58.191 61.111 32.23 0.00 46.99 4.02
4320 8090 4.459089 GCCGCCGAGAAGGAGCTT 62.459 66.667 0.00 0.00 45.00 3.74
4428 8198 2.372690 CGTCGGTGAGTTCGCCTTG 61.373 63.158 9.81 0.00 44.11 3.61
4441 8211 1.980772 GCCTTGGACCAATGCTGCT 60.981 57.895 22.91 0.00 33.43 4.24
4442 8212 0.680921 GCCTTGGACCAATGCTGCTA 60.681 55.000 22.91 0.00 33.43 3.49
4443 8213 1.098050 CCTTGGACCAATGCTGCTAC 58.902 55.000 7.54 0.00 0.00 3.58
4492 8262 0.394762 GGCATTGGTCAGGCATGAGA 60.395 55.000 0.00 0.00 35.66 3.27
4553 8325 3.571571 TGTTGTACAGCGTCATGTAGTC 58.428 45.455 5.18 0.00 36.36 2.59
4690 8475 5.692115 TCACTGAATAATGCCAAGGACTA 57.308 39.130 0.00 0.00 0.00 2.59
4722 8507 6.772360 TTATGGTACGGTTGTAGTACATCA 57.228 37.500 3.28 0.00 44.45 3.07
4724 8509 5.001237 TGGTACGGTTGTAGTACATCATG 57.999 43.478 3.28 3.01 44.45 3.07
4728 8513 6.369615 GGTACGGTTGTAGTACATCATGTTTT 59.630 38.462 3.28 0.00 44.45 2.43
4762 8547 1.264749 TTGCCGGAGCTCCTGTGTAT 61.265 55.000 29.73 0.00 40.80 2.29
4829 8628 8.146412 AGAAATCAAGGTGGATCTTTTCTTTTG 58.854 33.333 0.00 0.00 0.00 2.44
4832 8631 3.510459 AGGTGGATCTTTTCTTTTGGGG 58.490 45.455 0.00 0.00 0.00 4.96
4836 8635 4.832823 GTGGATCTTTTCTTTTGGGGAAGA 59.167 41.667 0.00 0.00 34.00 2.87
4844 8643 7.400627 TCTTTTCTTTTGGGGAAGAAGGTTAAA 59.599 33.333 1.03 0.00 44.05 1.52
4906 8711 8.980596 ACCTTTTGCTATGAATATCCAATTTGA 58.019 29.630 0.00 0.00 0.00 2.69
4912 8717 9.112725 TGCTATGAATATCCAATTTGATATCCG 57.887 33.333 11.37 2.60 37.03 4.18
4915 8720 8.868522 ATGAATATCCAATTTGATATCCGTGT 57.131 30.769 11.37 0.00 37.03 4.49
4927 8732 1.198713 ATCCGTGTTCAGATGAGCCT 58.801 50.000 0.00 0.00 0.00 4.58
4929 8734 0.742281 CCGTGTTCAGATGAGCCTGG 60.742 60.000 0.00 0.00 34.99 4.45
4943 8748 1.897398 GCCTGGTGAACAGTAACGCG 61.897 60.000 3.53 3.53 46.06 6.01
4952 8757 6.081693 GGTGAACAGTAACGCGATTAAAAAT 58.918 36.000 15.93 0.00 0.00 1.82
4965 8770 9.834628 ACGCGATTAAAAATAGAAAAATTCTGA 57.165 25.926 15.93 0.00 40.94 3.27
5019 8826 5.821470 TGATGTTTGTGCAAAATTTGGTGAT 59.179 32.000 7.89 0.00 31.33 3.06
5040 8847 2.751436 TGGCCATTCCAAGAGCGC 60.751 61.111 0.00 0.00 43.21 5.92
5043 8850 2.787249 CCATTCCAAGAGCGCACG 59.213 61.111 11.47 0.00 0.00 5.34
5044 8851 2.753966 CCATTCCAAGAGCGCACGG 61.754 63.158 11.47 3.83 0.00 4.94
5045 8852 2.034879 CATTCCAAGAGCGCACGGT 61.035 57.895 11.47 0.00 0.00 4.83
5071 8878 3.446442 AGACAAATCCAGGCATGAACT 57.554 42.857 0.00 0.00 0.00 3.01
5132 8942 2.910688 TTTTTCTGTCACGAGCTCCT 57.089 45.000 8.47 0.00 0.00 3.69
5133 8943 2.440539 TTTTCTGTCACGAGCTCCTC 57.559 50.000 8.47 0.00 0.00 3.71
5148 8958 6.221858 GAGCTCCTCGAATGTTCAAATATC 57.778 41.667 0.87 0.00 0.00 1.63
5171 8981 2.945008 CCAAATCTGGCACGTACATCAT 59.055 45.455 0.00 0.00 35.39 2.45
5172 8982 3.242837 CCAAATCTGGCACGTACATCATG 60.243 47.826 0.00 0.00 35.39 3.07
5174 8984 0.805711 TCTGGCACGTACATCATGCG 60.806 55.000 0.00 0.00 40.37 4.73
5189 8999 3.076621 TCATGCGCTCAAACATCTTTCT 58.923 40.909 9.73 0.00 0.00 2.52
5192 9002 1.198637 GCGCTCAAACATCTTTCTGCT 59.801 47.619 0.00 0.00 0.00 4.24
5194 9004 3.486584 CGCTCAAACATCTTTCTGCTTC 58.513 45.455 0.00 0.00 0.00 3.86
5197 9104 4.077822 CTCAAACATCTTTCTGCTTCCCT 58.922 43.478 0.00 0.00 0.00 4.20
5201 9108 4.861102 ACATCTTTCTGCTTCCCTTTTG 57.139 40.909 0.00 0.00 0.00 2.44
5206 9113 2.949177 TCTGCTTCCCTTTTGTGCTA 57.051 45.000 0.00 0.00 0.00 3.49
5212 9119 4.225042 TGCTTCCCTTTTGTGCTAGATCTA 59.775 41.667 1.69 1.69 0.00 1.98
5214 9121 5.468409 GCTTCCCTTTTGTGCTAGATCTATC 59.532 44.000 2.11 0.00 0.00 2.08
5240 9147 2.555227 GGACCTTGCAAATCCCTCTGAA 60.555 50.000 15.66 0.00 0.00 3.02
5259 9166 4.976987 TGAAAAACGAGAACACCTTTGTC 58.023 39.130 0.00 0.00 33.55 3.18
5264 9171 3.458189 ACGAGAACACCTTTGTCTCAAG 58.542 45.455 0.00 0.00 33.55 3.02
5317 9225 2.432628 CGTGAACGAGCTCCCACC 60.433 66.667 8.47 0.00 43.02 4.61
5318 9226 2.932234 CGTGAACGAGCTCCCACCT 61.932 63.158 8.47 0.00 43.02 4.00
5319 9227 1.371558 GTGAACGAGCTCCCACCTT 59.628 57.895 8.47 0.00 0.00 3.50
5321 9229 2.032681 AACGAGCTCCCACCTTGC 59.967 61.111 8.47 0.00 0.00 4.01
5326 9234 4.704833 GCTCCCACCTTGCGAGCA 62.705 66.667 7.75 0.00 46.63 4.26
5327 9235 2.270205 CTCCCACCTTGCGAGCAT 59.730 61.111 0.00 0.00 0.00 3.79
5329 9237 3.136123 CCCACCTTGCGAGCATGG 61.136 66.667 23.14 23.14 44.08 3.66
5349 9257 3.008157 TGGTGGAATTTTCAATGCTGCAT 59.992 39.130 9.81 9.81 0.00 3.96
5374 9283 1.528586 CTGGACTTGCTCGAGTTGTTG 59.471 52.381 15.13 3.16 0.00 3.33
5380 9289 4.632153 ACTTGCTCGAGTTGTTGAAGTAT 58.368 39.130 15.13 0.00 0.00 2.12
5383 9292 6.874134 ACTTGCTCGAGTTGTTGAAGTATAAT 59.126 34.615 15.13 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.409064 TCCACACCCCAACTCTCTAA 57.591 50.000 0.00 0.00 0.00 2.10
2 3 1.747444 AATCCACACCCCAACTCTCT 58.253 50.000 0.00 0.00 0.00 3.10
3 4 2.224769 TGAAATCCACACCCCAACTCTC 60.225 50.000 0.00 0.00 0.00 3.20
4 5 1.780309 TGAAATCCACACCCCAACTCT 59.220 47.619 0.00 0.00 0.00 3.24
5 6 2.162681 CTGAAATCCACACCCCAACTC 58.837 52.381 0.00 0.00 0.00 3.01
6 7 1.203050 CCTGAAATCCACACCCCAACT 60.203 52.381 0.00 0.00 0.00 3.16
7 8 1.256812 CCTGAAATCCACACCCCAAC 58.743 55.000 0.00 0.00 0.00 3.77
8 9 0.114168 CCCTGAAATCCACACCCCAA 59.886 55.000 0.00 0.00 0.00 4.12
9 10 0.774096 TCCCTGAAATCCACACCCCA 60.774 55.000 0.00 0.00 0.00 4.96
11 12 2.497273 CAAATCCCTGAAATCCACACCC 59.503 50.000 0.00 0.00 0.00 4.61
13 14 3.430453 TCCAAATCCCTGAAATCCACAC 58.570 45.455 0.00 0.00 0.00 3.82
14 15 3.075882 ACTCCAAATCCCTGAAATCCACA 59.924 43.478 0.00 0.00 0.00 4.17
15 16 3.701664 ACTCCAAATCCCTGAAATCCAC 58.298 45.455 0.00 0.00 0.00 4.02
16 17 4.344104 GAACTCCAAATCCCTGAAATCCA 58.656 43.478 0.00 0.00 0.00 3.41
18 19 3.378427 CCGAACTCCAAATCCCTGAAATC 59.622 47.826 0.00 0.00 0.00 2.17
20 21 2.554344 CCCGAACTCCAAATCCCTGAAA 60.554 50.000 0.00 0.00 0.00 2.69
21 22 1.004277 CCCGAACTCCAAATCCCTGAA 59.996 52.381 0.00 0.00 0.00 3.02
22 23 0.618458 CCCGAACTCCAAATCCCTGA 59.382 55.000 0.00 0.00 0.00 3.86
23 24 0.394352 CCCCGAACTCCAAATCCCTG 60.394 60.000 0.00 0.00 0.00 4.45
24 25 0.845102 ACCCCGAACTCCAAATCCCT 60.845 55.000 0.00 0.00 0.00 4.20
25 26 0.039180 AACCCCGAACTCCAAATCCC 59.961 55.000 0.00 0.00 0.00 3.85
26 27 2.793288 TAACCCCGAACTCCAAATCC 57.207 50.000 0.00 0.00 0.00 3.01
27 28 4.321452 GGTTTTAACCCCGAACTCCAAATC 60.321 45.833 0.00 0.00 43.43 2.17
28 29 3.575256 GGTTTTAACCCCGAACTCCAAAT 59.425 43.478 0.00 0.00 43.43 2.32
29 30 2.957680 GGTTTTAACCCCGAACTCCAAA 59.042 45.455 0.00 0.00 43.43 3.28
30 31 2.585330 GGTTTTAACCCCGAACTCCAA 58.415 47.619 0.00 0.00 43.43 3.53
31 32 2.275134 GGTTTTAACCCCGAACTCCA 57.725 50.000 0.00 0.00 43.43 3.86
38 39 1.015607 CCTCGTCGGTTTTAACCCCG 61.016 60.000 6.09 8.61 46.53 5.73
39 40 1.300971 GCCTCGTCGGTTTTAACCCC 61.301 60.000 6.09 0.00 46.53 4.95
40 41 1.629345 CGCCTCGTCGGTTTTAACCC 61.629 60.000 6.09 0.00 46.53 4.11
41 42 0.945743 ACGCCTCGTCGGTTTTAACC 60.946 55.000 1.42 1.42 37.45 2.85
42 43 1.386748 GTACGCCTCGTCGGTTTTAAC 59.613 52.381 0.00 0.00 41.54 2.01
43 44 1.696988 GTACGCCTCGTCGGTTTTAA 58.303 50.000 0.00 0.00 41.54 1.52
44 45 0.454285 CGTACGCCTCGTCGGTTTTA 60.454 55.000 0.52 0.00 41.54 1.52
45 46 1.730547 CGTACGCCTCGTCGGTTTT 60.731 57.895 0.52 0.00 41.54 2.43
46 47 2.126734 CGTACGCCTCGTCGGTTT 60.127 61.111 0.52 0.00 41.54 3.27
47 48 1.926511 ATTCGTACGCCTCGTCGGTT 61.927 55.000 11.24 0.00 41.54 4.44
48 49 1.926511 AATTCGTACGCCTCGTCGGT 61.927 55.000 11.24 0.00 41.54 4.69
49 50 1.198608 GAATTCGTACGCCTCGTCGG 61.199 60.000 11.24 0.00 41.54 4.79
50 51 0.521867 TGAATTCGTACGCCTCGTCG 60.522 55.000 11.24 0.57 41.54 5.12
51 52 1.582502 CTTGAATTCGTACGCCTCGTC 59.417 52.381 11.24 4.03 41.54 4.20
52 53 1.625616 CTTGAATTCGTACGCCTCGT 58.374 50.000 11.24 0.00 44.35 4.18
53 54 0.921347 CCTTGAATTCGTACGCCTCG 59.079 55.000 11.24 0.00 0.00 4.63
54 55 2.005971 ACCTTGAATTCGTACGCCTC 57.994 50.000 11.24 7.23 0.00 4.70
55 56 2.467566 AACCTTGAATTCGTACGCCT 57.532 45.000 11.24 0.00 0.00 5.52
56 57 4.666928 TTAAACCTTGAATTCGTACGCC 57.333 40.909 11.24 0.14 0.00 5.68
57 58 8.831000 ATATTTTAAACCTTGAATTCGTACGC 57.169 30.769 11.24 0.00 0.00 4.42
75 76 9.496710 TCCCTGACCAGAGTAAAGTATATTTTA 57.503 33.333 0.00 0.00 0.00 1.52
76 77 8.388656 TCCCTGACCAGAGTAAAGTATATTTT 57.611 34.615 0.00 0.00 0.00 1.82
77 78 7.844779 TCTCCCTGACCAGAGTAAAGTATATTT 59.155 37.037 0.00 0.00 0.00 1.40
78 79 7.363031 TCTCCCTGACCAGAGTAAAGTATATT 58.637 38.462 0.00 0.00 0.00 1.28
79 80 6.923670 TCTCCCTGACCAGAGTAAAGTATAT 58.076 40.000 0.00 0.00 0.00 0.86
80 81 6.337185 TCTCCCTGACCAGAGTAAAGTATA 57.663 41.667 0.00 0.00 0.00 1.47
81 82 5.208294 TCTCCCTGACCAGAGTAAAGTAT 57.792 43.478 0.00 0.00 0.00 2.12
82 83 4.669866 TCTCCCTGACCAGAGTAAAGTA 57.330 45.455 0.00 0.00 0.00 2.24
83 84 3.544698 TCTCCCTGACCAGAGTAAAGT 57.455 47.619 0.00 0.00 0.00 2.66
84 85 3.133721 CCATCTCCCTGACCAGAGTAAAG 59.866 52.174 0.00 0.00 0.00 1.85
85 86 3.107601 CCATCTCCCTGACCAGAGTAAA 58.892 50.000 0.00 0.00 0.00 2.01
86 87 2.626950 CCCATCTCCCTGACCAGAGTAA 60.627 54.545 0.00 0.00 0.00 2.24
87 88 1.062886 CCCATCTCCCTGACCAGAGTA 60.063 57.143 0.00 0.00 0.00 2.59
88 89 0.326048 CCCATCTCCCTGACCAGAGT 60.326 60.000 0.00 0.00 0.00 3.24
89 90 0.326048 ACCCATCTCCCTGACCAGAG 60.326 60.000 0.00 0.00 0.00 3.35
90 91 0.325671 GACCCATCTCCCTGACCAGA 60.326 60.000 0.00 0.00 0.00 3.86
91 92 1.680522 CGACCCATCTCCCTGACCAG 61.681 65.000 0.00 0.00 0.00 4.00
98 99 0.744771 GCTTTCACGACCCATCTCCC 60.745 60.000 0.00 0.00 0.00 4.30
104 105 4.979204 CGTAGCTTTCACGACCCA 57.021 55.556 1.15 0.00 41.91 4.51
118 119 3.161450 GCCCATCTCCCCTGCGTA 61.161 66.667 0.00 0.00 0.00 4.42
136 137 2.032681 ACAGGAACAAGCGAGCCC 59.967 61.111 0.00 0.00 0.00 5.19
138 139 2.383527 CCGACAGGAACAAGCGAGC 61.384 63.158 0.00 0.00 41.02 5.03
139 140 1.006102 ACCGACAGGAACAAGCGAG 60.006 57.895 0.00 0.00 41.02 5.03
140 141 1.300620 CACCGACAGGAACAAGCGA 60.301 57.895 0.00 0.00 41.02 4.93
141 142 2.317609 CCACCGACAGGAACAAGCG 61.318 63.158 0.00 0.00 41.02 4.68
142 143 1.227853 ACCACCGACAGGAACAAGC 60.228 57.895 0.00 0.00 41.02 4.01
143 144 0.602905 GGACCACCGACAGGAACAAG 60.603 60.000 0.00 0.00 41.02 3.16
144 145 1.448497 GGACCACCGACAGGAACAA 59.552 57.895 0.00 0.00 41.02 2.83
145 146 3.144285 GGACCACCGACAGGAACA 58.856 61.111 0.00 0.00 41.02 3.18
191 192 3.056607 AGAAACGCCCAGAAAATTGATGG 60.057 43.478 0.00 0.00 0.00 3.51
262 263 2.892425 CCTGGCGATCCGAAGTGC 60.892 66.667 0.00 0.00 34.14 4.40
291 292 6.633500 TGGTTTTGGAGTTATTTCTCTGTG 57.367 37.500 0.00 0.00 35.11 3.66
292 293 7.839680 ATTGGTTTTGGAGTTATTTCTCTGT 57.160 32.000 0.00 0.00 35.11 3.41
293 294 7.814587 GGAATTGGTTTTGGAGTTATTTCTCTG 59.185 37.037 0.00 0.00 35.11 3.35
298 299 7.373617 AGTGGAATTGGTTTTGGAGTTATTT 57.626 32.000 0.00 0.00 0.00 1.40
309 310 2.293399 GACGAGCAAGTGGAATTGGTTT 59.707 45.455 0.00 0.00 40.78 3.27
323 324 0.819582 TGCTGATGATGAGACGAGCA 59.180 50.000 0.00 0.00 34.16 4.26
328 333 2.144730 GCTGGATGCTGATGATGAGAC 58.855 52.381 0.00 0.00 38.95 3.36
350 355 1.513158 GCGAGTCTAGCTGCTGGAA 59.487 57.895 17.61 0.00 0.00 3.53
351 356 2.418910 GGCGAGTCTAGCTGCTGGA 61.419 63.158 11.98 11.98 34.52 3.86
352 357 2.105930 GGCGAGTCTAGCTGCTGG 59.894 66.667 13.43 9.98 34.52 4.85
353 358 1.518133 GTGGCGAGTCTAGCTGCTG 60.518 63.158 13.43 2.51 34.52 4.41
354 359 2.888863 GTGGCGAGTCTAGCTGCT 59.111 61.111 7.57 7.57 34.52 4.24
355 360 2.580867 CGTGGCGAGTCTAGCTGC 60.581 66.667 4.87 0.00 34.52 5.25
356 361 1.226435 GTCGTGGCGAGTCTAGCTG 60.226 63.158 4.87 0.00 36.23 4.24
357 362 1.241990 TTGTCGTGGCGAGTCTAGCT 61.242 55.000 4.87 0.00 36.23 3.32
367 372 2.432628 CGGAGGTCTTGTCGTGGC 60.433 66.667 0.00 0.00 0.00 5.01
374 379 1.216710 GGACTGCTCGGAGGTCTTG 59.783 63.158 7.20 0.00 0.00 3.02
375 380 1.228894 TGGACTGCTCGGAGGTCTT 60.229 57.895 7.20 0.00 0.00 3.01
379 384 1.142748 GATGTGGACTGCTCGGAGG 59.857 63.158 7.20 0.00 0.00 4.30
388 393 0.613777 GGGAACGGAAGATGTGGACT 59.386 55.000 0.00 0.00 0.00 3.85
425 438 2.032376 TCATCGGCTGTTGCTGCA 59.968 55.556 0.00 0.00 44.83 4.41
426 439 2.789917 CTCATCGGCTGTTGCTGC 59.210 61.111 0.00 0.00 44.83 5.25
435 448 3.285215 CATGGCAGGCTCATCGGC 61.285 66.667 0.00 0.00 38.75 5.54
436 449 1.890979 GACATGGCAGGCTCATCGG 60.891 63.158 0.00 0.00 0.00 4.18
437 450 1.890979 GGACATGGCAGGCTCATCG 60.891 63.158 0.00 0.00 0.00 3.84
440 453 2.189191 GACTGGACATGGCAGGCTCA 62.189 60.000 0.00 0.00 0.00 4.26
441 454 1.451028 GACTGGACATGGCAGGCTC 60.451 63.158 0.00 0.00 0.00 4.70
512 525 2.092914 AGGGCTAGCTATTGGTGTTCAC 60.093 50.000 15.72 0.00 0.00 3.18
518 531 2.050918 GGAGAAGGGCTAGCTATTGGT 58.949 52.381 15.72 0.00 0.00 3.67
520 533 1.349357 GGGGAGAAGGGCTAGCTATTG 59.651 57.143 15.72 0.00 0.00 1.90
521 534 1.061346 TGGGGAGAAGGGCTAGCTATT 60.061 52.381 15.72 9.65 0.00 1.73
522 535 0.568192 TGGGGAGAAGGGCTAGCTAT 59.432 55.000 15.72 0.00 0.00 2.97
524 537 1.383803 CTGGGGAGAAGGGCTAGCT 60.384 63.158 15.72 0.00 0.00 3.32
525 538 3.113514 GCTGGGGAGAAGGGCTAGC 62.114 68.421 6.04 6.04 0.00 3.42
527 540 2.366972 GGCTGGGGAGAAGGGCTA 60.367 66.667 0.00 0.00 0.00 3.93
530 543 3.415087 CTGGGCTGGGGAGAAGGG 61.415 72.222 0.00 0.00 0.00 3.95
532 545 3.013932 AGCTGGGCTGGGGAGAAG 61.014 66.667 0.00 0.00 37.57 2.85
533 546 3.011517 GAGCTGGGCTGGGGAGAA 61.012 66.667 0.00 0.00 39.88 2.87
565 580 4.659172 CCTGGCTGGCACGGGAAA 62.659 66.667 0.00 0.00 36.43 3.13
730 761 4.109675 CGGGGGTGGGTGATGACC 62.110 72.222 0.00 0.00 42.27 4.02
884 915 2.501128 CCGTGCGAGGGATGATGT 59.499 61.111 0.00 0.00 0.00 3.06
924 955 3.062466 CTCGCTCCGGTCAGGTCA 61.062 66.667 0.00 0.00 41.99 4.02
927 958 3.708220 GAAGCTCGCTCCGGTCAGG 62.708 68.421 0.00 0.00 42.97 3.86
929 960 4.116328 CGAAGCTCGCTCCGGTCA 62.116 66.667 0.00 0.00 31.14 4.02
930 961 4.856607 CCGAAGCTCGCTCCGGTC 62.857 72.222 8.51 0.00 38.82 4.79
932 963 4.856607 GTCCGAAGCTCGCTCCGG 62.857 72.222 10.51 10.51 43.02 5.14
934 965 3.812019 TCGTCCGAAGCTCGCTCC 61.812 66.667 0.00 0.00 38.82 4.70
935 966 2.577378 GTCGTCCGAAGCTCGCTC 60.577 66.667 0.00 0.00 38.82 5.03
936 967 4.462417 CGTCGTCCGAAGCTCGCT 62.462 66.667 0.00 0.00 38.82 4.93
938 969 3.720106 CTCCGTCGTCCGAAGCTCG 62.720 68.421 0.00 0.00 39.56 5.03
939 970 2.100603 CTCCGTCGTCCGAAGCTC 59.899 66.667 0.00 0.00 39.56 4.09
940 971 3.441290 CCTCCGTCGTCCGAAGCT 61.441 66.667 0.00 0.00 39.56 3.74
942 973 2.792599 CTCCTCCGTCGTCCGAAG 59.207 66.667 0.00 0.00 39.56 3.79
943 974 3.437795 GCTCCTCCGTCGTCCGAA 61.438 66.667 0.00 0.00 39.56 4.30
946 977 3.878519 CTCGCTCCTCCGTCGTCC 61.879 72.222 0.00 0.00 0.00 4.79
947 978 4.539881 GCTCGCTCCTCCGTCGTC 62.540 72.222 0.00 0.00 0.00 4.20
1380 1440 2.037367 TCACTGTCTCCTCCCCCG 59.963 66.667 0.00 0.00 0.00 5.73
1722 1798 2.037620 GATCTGCATCCAGCTCCGGT 62.038 60.000 0.00 0.00 45.94 5.28
1815 1900 3.056107 TGGTATGACTAGTGCTTGTCACC 60.056 47.826 16.13 14.24 45.11 4.02
1857 1942 0.109458 TCGTGTGTGCATCGTAGGAC 60.109 55.000 0.00 0.00 0.00 3.85
1874 1959 1.065600 GAGCTGCTGCCTCTACTCG 59.934 63.158 7.01 0.00 40.80 4.18
1951 2036 2.818132 GCTCGATCTGACCCCAGG 59.182 66.667 0.00 0.00 40.76 4.45
2058 2143 0.890996 CCAAGTTCCCAGACACAGCC 60.891 60.000 0.00 0.00 0.00 4.85
2125 2210 1.135333 GTGTGCTGCTCTCCTACTACC 59.865 57.143 0.00 0.00 0.00 3.18
2136 2221 0.824595 TGCCAGAATTGTGTGCTGCT 60.825 50.000 14.18 0.00 0.00 4.24
2178 2263 0.912486 CCCTCCTCGGACCAGAATTT 59.088 55.000 0.00 0.00 33.16 1.82
2219 2304 3.187432 GTCTCTTAGTGTGCTTCTTTGCC 59.813 47.826 0.00 0.00 0.00 4.52
2262 2347 1.755380 GTATCCCTACTTGTGGACGCT 59.245 52.381 0.00 0.00 32.36 5.07
2332 2417 0.246635 CTGTTACTGGCTGCGGTACT 59.753 55.000 0.00 0.00 0.00 2.73
2361 2449 3.221771 AGAGGCAAATGCAACTGTGTTA 58.778 40.909 7.80 0.00 44.36 2.41
2403 2491 1.153349 GTCCGATGAAGCCCTGGAC 60.153 63.158 0.00 0.00 41.98 4.02
2418 2506 0.234884 CTGAAACTTTGCCGTCGTCC 59.765 55.000 0.00 0.00 0.00 4.79
2421 2509 0.110644 GCTCTGAAACTTTGCCGTCG 60.111 55.000 0.00 0.00 0.00 5.12
2422 2510 0.944386 TGCTCTGAAACTTTGCCGTC 59.056 50.000 0.00 0.00 0.00 4.79
2423 2511 1.609208 ATGCTCTGAAACTTTGCCGT 58.391 45.000 0.00 0.00 0.00 5.68
2424 2512 3.002791 TCTATGCTCTGAAACTTTGCCG 58.997 45.455 0.00 0.00 0.00 5.69
2440 2528 1.834378 TGCCTCGGAGCCCTCTATG 60.834 63.158 0.00 0.00 0.00 2.23
2442 2530 2.442272 GTGCCTCGGAGCCCTCTA 60.442 66.667 0.00 0.00 0.00 2.43
2568 2656 0.593128 CGGTCACCTTTGCTTTCAGG 59.407 55.000 0.00 0.00 36.10 3.86
2585 2673 2.249413 ATCAGACAGGCCAAGCTCGG 62.249 60.000 5.01 0.00 0.00 4.63
2617 2705 0.671251 TTTGCCGAACAACCATCACC 59.329 50.000 0.00 0.00 38.23 4.02
2706 2794 7.539366 GCTGATGAATCCGAATAGTTACTACTC 59.461 40.741 0.00 0.00 35.78 2.59
2737 2825 7.666623 TCATATACAGTCTCGGCATTATTCAA 58.333 34.615 0.00 0.00 0.00 2.69
2784 2872 2.095969 CACCTGATAACGCTTGCGAAAA 60.096 45.455 22.03 6.59 0.00 2.29
2794 2882 7.222224 GGTAACATCTAAACTCACCTGATAACG 59.778 40.741 0.00 0.00 0.00 3.18
2805 2893 4.938226 AGCAGCAAGGTAACATCTAAACTC 59.062 41.667 0.00 0.00 41.41 3.01
2908 3052 6.651086 CAGGCATGGATTCATCAGTCTATAT 58.349 40.000 0.00 0.00 0.00 0.86
2911 3055 4.347360 CAGGCATGGATTCATCAGTCTA 57.653 45.455 0.00 0.00 0.00 2.59
2968 3143 4.226427 TCAGTAAAGATCAGGCAGCATT 57.774 40.909 0.00 0.00 0.00 3.56
2972 3147 7.335422 ACAATTACTTCAGTAAAGATCAGGCAG 59.665 37.037 3.54 0.00 42.93 4.85
2999 5329 2.084546 GCAGGTCATCCAAGTTGGTAC 58.915 52.381 21.35 16.55 39.03 3.34
3168 5499 2.200067 CATGCTTCGAGGACTGATGTC 58.800 52.381 0.00 0.00 42.22 3.06
3302 5759 7.476540 TTGTAGATAACTACTCCTTTGCTGA 57.523 36.000 11.04 0.00 46.33 4.26
3347 5891 4.899502 TCTAGCCCACTTTTCTCTTTCAG 58.100 43.478 0.00 0.00 0.00 3.02
3348 5892 4.974645 TCTAGCCCACTTTTCTCTTTCA 57.025 40.909 0.00 0.00 0.00 2.69
3349 5893 5.552178 TCTTCTAGCCCACTTTTCTCTTTC 58.448 41.667 0.00 0.00 0.00 2.62
3350 5894 5.568620 TCTTCTAGCCCACTTTTCTCTTT 57.431 39.130 0.00 0.00 0.00 2.52
3354 5902 7.021998 AGTTTATCTTCTAGCCCACTTTTCT 57.978 36.000 0.00 0.00 0.00 2.52
3355 5903 7.689446 AAGTTTATCTTCTAGCCCACTTTTC 57.311 36.000 0.00 0.00 0.00 2.29
3371 5919 9.865321 GTAAACAAATAAAGGGGGAAGTTTATC 57.135 33.333 0.00 0.00 34.15 1.75
3400 5948 2.929531 TCAGATCAGCGACAGAAGTC 57.070 50.000 0.00 0.00 41.46 3.01
3531 6097 3.491619 CCTGTGCTACTCATCGTAATGCT 60.492 47.826 0.00 0.00 32.58 3.79
3536 6102 3.508402 TGTTTCCTGTGCTACTCATCGTA 59.492 43.478 0.00 0.00 0.00 3.43
3621 6202 9.968870 AAGTGTTAATTTAAGCCGAACAAATTA 57.031 25.926 0.00 0.00 34.57 1.40
3628 6209 8.836268 TCTAAGAAGTGTTAATTTAAGCCGAA 57.164 30.769 0.00 0.00 0.00 4.30
3692 6277 5.464057 TCACACACGTCAAAACCTACTAATG 59.536 40.000 0.00 0.00 0.00 1.90
3758 6347 9.507329 AAATAAAGAATTCTGTACTCTCTGCAA 57.493 29.630 9.17 0.00 0.00 4.08
3930 7700 1.135960 GGAGCCTGCCTTCTAGGAAT 58.864 55.000 0.00 0.00 37.67 3.01
3972 7742 1.712977 CCAGAAGCAGCTCGGCATTC 61.713 60.000 0.00 0.00 35.83 2.67
3978 7748 0.528017 TACTGTCCAGAAGCAGCTCG 59.472 55.000 0.00 0.00 36.26 5.03
4128 7898 0.657368 CGAACAGAAAGTTGGTGCGC 60.657 55.000 0.00 0.00 41.51 6.09
4428 8198 2.113860 TTCAGTAGCAGCATTGGTCC 57.886 50.000 0.00 0.00 36.27 4.46
4441 8211 6.053005 CCAGTAAACTTCCACACTTTCAGTA 58.947 40.000 0.00 0.00 0.00 2.74
4442 8212 4.881850 CCAGTAAACTTCCACACTTTCAGT 59.118 41.667 0.00 0.00 0.00 3.41
4443 8213 4.881850 ACCAGTAAACTTCCACACTTTCAG 59.118 41.667 0.00 0.00 0.00 3.02
4492 8262 9.672673 AATAGAGTACATATCTGCAAAGTGTTT 57.327 29.630 0.00 0.00 0.00 2.83
4569 8345 2.901192 CAAAAGGGAAAATAACCGGGGT 59.099 45.455 6.32 0.00 0.00 4.95
4690 8475 3.067684 ACCGTACCATAAAAGCTTGCT 57.932 42.857 0.00 0.00 0.00 3.91
4747 8532 1.066858 ACAACATACACAGGAGCTCCG 60.067 52.381 26.95 22.44 42.08 4.63
4762 8547 1.202627 GCAAAATGGCCTTGGACAACA 60.203 47.619 3.32 0.00 0.00 3.33
4829 8628 2.226962 GGGGTTTAACCTTCTTCCCC 57.773 55.000 14.27 0.76 46.11 4.81
4832 8631 1.830279 CCGGGGGTTTAACCTTCTTC 58.170 55.000 14.27 0.00 38.64 2.87
4836 8635 2.146146 GAGGCCGGGGGTTTAACCTT 62.146 60.000 14.27 0.00 38.64 3.50
4889 8694 9.958180 ACACGGATATCAAATTGGATATTCATA 57.042 29.630 17.85 0.00 39.85 2.15
4894 8699 8.156820 TCTGAACACGGATATCAAATTGGATAT 58.843 33.333 14.18 14.18 41.87 1.63
4906 8711 2.968574 AGGCTCATCTGAACACGGATAT 59.031 45.455 0.00 0.00 0.00 1.63
4908 8713 1.134580 CAGGCTCATCTGAACACGGAT 60.135 52.381 0.00 0.00 36.93 4.18
4912 8717 1.002430 TCACCAGGCTCATCTGAACAC 59.998 52.381 0.00 0.00 36.93 3.32
4915 8720 1.699083 TGTTCACCAGGCTCATCTGAA 59.301 47.619 0.00 0.00 36.93 3.02
4927 8732 2.157834 AATCGCGTTACTGTTCACCA 57.842 45.000 5.77 0.00 0.00 4.17
4929 8734 8.164153 TCTATTTTTAATCGCGTTACTGTTCAC 58.836 33.333 5.77 0.00 0.00 3.18
4960 8765 6.867816 ACATCGCTTGCAAAATAAATTCAGAA 59.132 30.769 0.00 0.00 0.00 3.02
4961 8766 6.308524 CACATCGCTTGCAAAATAAATTCAGA 59.691 34.615 0.00 0.00 0.00 3.27
4962 8767 6.463478 CACATCGCTTGCAAAATAAATTCAG 58.537 36.000 0.00 0.00 0.00 3.02
4963 8768 5.163972 GCACATCGCTTGCAAAATAAATTCA 60.164 36.000 0.00 0.00 39.93 2.57
4965 8770 4.689812 TGCACATCGCTTGCAAAATAAATT 59.310 33.333 0.00 0.00 46.90 1.82
4970 8775 3.890145 TGCACATCGCTTGCAAAAT 57.110 42.105 0.00 0.00 46.90 1.82
4994 8801 5.064452 TCACCAAATTTTGCACAAACATCAC 59.936 36.000 3.50 0.00 0.00 3.06
5055 8862 3.159213 TCACAGTTCATGCCTGGATTT 57.841 42.857 14.33 0.00 34.16 2.17
5059 8866 1.901591 ACTTCACAGTTCATGCCTGG 58.098 50.000 14.33 0.00 34.16 4.45
5130 8940 6.435430 TTGGTGATATTTGAACATTCGAGG 57.565 37.500 0.00 0.00 0.00 4.63
5132 8942 8.183536 CAGATTTGGTGATATTTGAACATTCGA 58.816 33.333 0.00 0.00 0.00 3.71
5133 8943 7.433131 CCAGATTTGGTGATATTTGAACATTCG 59.567 37.037 0.00 0.00 39.79 3.34
5148 8958 1.518325 TGTACGTGCCAGATTTGGTG 58.482 50.000 3.90 0.00 46.80 4.17
5164 8974 3.534554 AGATGTTTGAGCGCATGATGTA 58.465 40.909 11.47 0.00 0.00 2.29
5171 8981 1.069022 GCAGAAAGATGTTTGAGCGCA 60.069 47.619 11.47 0.00 0.00 6.09
5172 8982 1.198637 AGCAGAAAGATGTTTGAGCGC 59.801 47.619 0.00 0.00 30.82 5.92
5174 8984 3.366781 GGGAAGCAGAAAGATGTTTGAGC 60.367 47.826 0.00 0.00 0.00 4.26
5189 8999 2.949177 TCTAGCACAAAAGGGAAGCA 57.051 45.000 0.00 0.00 0.00 3.91
5192 9002 6.814954 AGATAGATCTAGCACAAAAGGGAA 57.185 37.500 19.62 0.00 34.85 3.97
5194 9004 5.238214 GCAAGATAGATCTAGCACAAAAGGG 59.762 44.000 19.62 1.85 35.76 3.95
5197 9104 4.811024 CCGCAAGATAGATCTAGCACAAAA 59.189 41.667 19.62 0.00 43.02 2.44
5201 9108 3.570559 GTCCGCAAGATAGATCTAGCAC 58.429 50.000 19.62 7.98 43.02 4.40
5206 9113 2.224161 GCAAGGTCCGCAAGATAGATCT 60.224 50.000 0.00 0.00 43.02 2.75
5212 9119 4.819783 TTGCAAGGTCCGCAAGAT 57.180 50.000 0.00 0.00 44.13 2.40
5222 9129 4.309933 GTTTTTCAGAGGGATTTGCAAGG 58.690 43.478 0.00 0.00 0.00 3.61
5231 9138 3.463944 GTGTTCTCGTTTTTCAGAGGGA 58.536 45.455 0.00 0.00 35.34 4.20
5240 9147 4.258543 TGAGACAAAGGTGTTCTCGTTTT 58.741 39.130 0.00 0.00 38.41 2.43
5259 9166 2.412847 CGGAAAGGTTAAAGCGCTTGAG 60.413 50.000 25.80 0.00 0.00 3.02
5264 9171 1.154093 GCCGGAAAGGTTAAAGCGC 60.154 57.895 5.05 0.00 43.70 5.92
5317 9225 0.813184 AATTCCACCATGCTCGCAAG 59.187 50.000 0.00 0.00 0.00 4.01
5318 9226 1.255882 AAATTCCACCATGCTCGCAA 58.744 45.000 0.00 0.00 0.00 4.85
5319 9227 1.202114 GAAAATTCCACCATGCTCGCA 59.798 47.619 0.00 0.00 0.00 5.10
5321 9229 3.574284 TTGAAAATTCCACCATGCTCG 57.426 42.857 0.00 0.00 0.00 5.03
5326 9234 3.008157 TGCAGCATTGAAAATTCCACCAT 59.992 39.130 0.00 0.00 0.00 3.55
5327 9235 2.367894 TGCAGCATTGAAAATTCCACCA 59.632 40.909 0.00 0.00 0.00 4.17
5329 9237 5.616488 AAATGCAGCATTGAAAATTCCAC 57.384 34.783 21.56 0.00 34.04 4.02
5349 9257 1.416401 ACTCGAGCAAGTCCAGGAAAA 59.584 47.619 13.61 0.00 0.00 2.29
5374 9283 6.759827 TGTTTCCTGCCGAGTTATTATACTTC 59.240 38.462 0.00 0.00 0.00 3.01
5380 9289 3.869065 CCTGTTTCCTGCCGAGTTATTA 58.131 45.455 0.00 0.00 0.00 0.98
5383 9292 0.321298 GCCTGTTTCCTGCCGAGTTA 60.321 55.000 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.