Multiple sequence alignment - TraesCS3D01G043700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G043700 chr3D 100.000 2914 0 0 1 2914 16627898 16630811 0.000000e+00 5382.0
1 TraesCS3D01G043700 chr3A 84.321 2143 150 76 307 2386 19976996 19974977 0.000000e+00 1925.0
2 TraesCS3D01G043700 chr3A 83.778 487 47 14 2456 2914 19974835 19974353 1.600000e-117 433.0
3 TraesCS3D01G043700 chr3A 100.000 40 0 0 269 308 19977058 19977019 1.120000e-09 75.0
4 TraesCS3D01G043700 chr3B 85.783 1674 105 58 778 2411 24054874 24056454 0.000000e+00 1650.0
5 TraesCS3D01G043700 chr3B 79.126 412 22 24 201 561 24054336 24054734 2.920000e-55 226.0
6 TraesCS3D01G043700 chr7D 97.297 37 0 1 2775 2811 15401878 15401843 8.720000e-06 62.1
7 TraesCS3D01G043700 chr2B 86.207 58 6 2 2775 2831 446046935 446046991 8.720000e-06 62.1
8 TraesCS3D01G043700 chr6A 88.000 50 5 1 2775 2824 18838686 18838734 1.130000e-04 58.4
9 TraesCS3D01G043700 chr5D 94.595 37 2 0 2775 2811 503180943 503180907 1.130000e-04 58.4
10 TraesCS3D01G043700 chr1B 90.698 43 4 0 2783 2825 352388927 352388885 1.130000e-04 58.4
11 TraesCS3D01G043700 chr5A 81.944 72 7 5 2587 2655 451884502 451884570 4.060000e-04 56.5
12 TraesCS3D01G043700 chr1D 94.595 37 1 1 2775 2811 51766846 51766881 4.060000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G043700 chr3D 16627898 16630811 2913 False 5382 5382 100.000000 1 2914 1 chr3D.!!$F1 2913
1 TraesCS3D01G043700 chr3A 19974353 19977058 2705 True 811 1925 89.366333 269 2914 3 chr3A.!!$R1 2645
2 TraesCS3D01G043700 chr3B 24054336 24056454 2118 False 938 1650 82.454500 201 2411 2 chr3B.!!$F1 2210

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
177 178 0.032678 CAAGGCGTCAGTCAGTCACT 59.967 55.0 0.0 0.0 34.67 3.41 F
693 772 0.035056 GCTGTACTCCACAAGCCCAT 60.035 55.0 0.0 0.0 36.48 4.00 F
805 885 0.106521 GCCAGGAAGCCAGAGAGATC 59.893 60.0 0.0 0.0 0.00 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1545 1660 0.178935 CATCCTCCTCCTCCTCCTCC 60.179 65.0 0.0 0.0 0.00 4.30 R
1548 1663 0.178935 CCTCATCCTCCTCCTCCTCC 60.179 65.0 0.0 0.0 0.00 4.30 R
2641 2920 0.667453 TGTGCATGTGCGTGATGTTT 59.333 45.0 0.0 0.0 45.83 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.513895 AACCACAACCACCCGAGG 59.486 61.111 0.00 0.00 0.00 4.63
18 19 3.128032 AACCACAACCACCCGAGGG 62.128 63.158 6.63 6.63 42.03 4.30
19 20 3.246112 CCACAACCACCCGAGGGA 61.246 66.667 16.26 0.00 38.96 4.20
20 21 2.032071 CACAACCACCCGAGGGAC 59.968 66.667 16.26 0.00 38.96 4.46
22 23 2.347490 CAACCACCCGAGGGACTG 59.653 66.667 16.26 3.37 41.55 3.51
23 24 2.928396 AACCACCCGAGGGACTGG 60.928 66.667 16.26 15.12 41.55 4.00
24 25 3.477956 AACCACCCGAGGGACTGGA 62.478 63.158 20.77 0.00 41.55 3.86
25 26 3.077556 CCACCCGAGGGACTGGAG 61.078 72.222 16.26 0.00 41.55 3.86
26 27 2.283966 CACCCGAGGGACTGGAGT 60.284 66.667 16.26 0.00 41.55 3.85
27 28 2.283966 ACCCGAGGGACTGGAGTG 60.284 66.667 16.26 0.00 41.55 3.51
28 29 2.037367 CCCGAGGGACTGGAGTGA 59.963 66.667 0.84 0.00 41.55 3.41
29 30 1.609501 CCCGAGGGACTGGAGTGAA 60.610 63.158 0.84 0.00 41.55 3.18
30 31 0.978146 CCCGAGGGACTGGAGTGAAT 60.978 60.000 0.84 0.00 41.55 2.57
31 32 0.176680 CCGAGGGACTGGAGTGAATG 59.823 60.000 0.00 0.00 41.55 2.67
32 33 0.460987 CGAGGGACTGGAGTGAATGC 60.461 60.000 0.00 0.00 41.55 3.56
33 34 0.460987 GAGGGACTGGAGTGAATGCG 60.461 60.000 0.00 0.00 41.55 4.73
34 35 1.450312 GGGACTGGAGTGAATGCGG 60.450 63.158 0.00 0.00 0.00 5.69
35 36 1.596934 GGACTGGAGTGAATGCGGA 59.403 57.895 0.00 0.00 0.00 5.54
36 37 0.179000 GGACTGGAGTGAATGCGGAT 59.821 55.000 0.00 0.00 0.00 4.18
37 38 1.576356 GACTGGAGTGAATGCGGATC 58.424 55.000 0.00 0.00 0.00 3.36
38 39 0.179000 ACTGGAGTGAATGCGGATCC 59.821 55.000 0.00 0.00 0.00 3.36
39 40 0.178767 CTGGAGTGAATGCGGATCCA 59.821 55.000 13.41 0.00 37.71 3.41
40 41 0.178767 TGGAGTGAATGCGGATCCAG 59.821 55.000 13.41 5.88 35.16 3.86
41 42 1.162800 GGAGTGAATGCGGATCCAGC 61.163 60.000 13.41 16.21 0.00 4.85
42 43 1.493950 GAGTGAATGCGGATCCAGCG 61.494 60.000 13.41 0.00 37.44 5.18
43 44 1.521457 GTGAATGCGGATCCAGCGA 60.521 57.895 13.41 7.67 37.44 4.93
44 45 1.521457 TGAATGCGGATCCAGCGAC 60.521 57.895 13.41 11.22 37.44 5.19
45 46 1.227380 GAATGCGGATCCAGCGACT 60.227 57.895 13.41 4.80 37.44 4.18
46 47 1.493950 GAATGCGGATCCAGCGACTG 61.494 60.000 13.41 0.00 37.44 3.51
47 48 1.960040 AATGCGGATCCAGCGACTGA 61.960 55.000 13.41 0.62 37.44 3.41
48 49 1.960040 ATGCGGATCCAGCGACTGAA 61.960 55.000 13.41 0.00 37.44 3.02
49 50 1.227380 GCGGATCCAGCGACTGAAT 60.227 57.895 13.41 0.00 32.44 2.57
50 51 0.811616 GCGGATCCAGCGACTGAATT 60.812 55.000 13.41 0.00 32.44 2.17
51 52 1.212616 CGGATCCAGCGACTGAATTC 58.787 55.000 13.41 0.00 32.44 2.17
52 53 1.471501 CGGATCCAGCGACTGAATTCA 60.472 52.381 13.41 8.12 32.44 2.57
61 62 3.403277 CTGAATTCAGCCGGCGAG 58.597 61.111 23.20 18.47 37.15 5.03
62 63 2.125147 TGAATTCAGCCGGCGAGG 60.125 61.111 23.20 15.29 44.97 4.63
63 64 2.186903 GAATTCAGCCGGCGAGGA 59.813 61.111 23.20 17.57 45.00 3.71
64 65 1.449601 GAATTCAGCCGGCGAGGAA 60.450 57.895 25.84 25.84 45.00 3.36
65 66 1.706287 GAATTCAGCCGGCGAGGAAC 61.706 60.000 26.06 15.01 45.00 3.62
66 67 4.735132 TTCAGCCGGCGAGGAACG 62.735 66.667 23.20 4.83 45.00 3.95
68 69 4.735132 CAGCCGGCGAGGAACGAA 62.735 66.667 23.20 0.00 45.00 3.85
69 70 4.736896 AGCCGGCGAGGAACGAAC 62.737 66.667 23.20 0.00 45.00 3.95
71 72 4.712425 CCGGCGAGGAACGAACGT 62.712 66.667 9.30 0.00 45.00 3.99
72 73 2.176546 CGGCGAGGAACGAACGTA 59.823 61.111 0.00 0.00 45.77 3.57
73 74 2.148365 CGGCGAGGAACGAACGTAC 61.148 63.158 0.00 0.00 45.77 3.67
74 75 2.148365 GGCGAGGAACGAACGTACG 61.148 63.158 15.01 15.01 45.77 3.67
75 76 2.148365 GCGAGGAACGAACGTACGG 61.148 63.158 21.06 4.19 45.77 4.02
76 77 2.148365 CGAGGAACGAACGTACGGC 61.148 63.158 21.06 10.21 45.77 5.68
77 78 1.803117 GAGGAACGAACGTACGGCC 60.803 63.158 21.06 9.56 37.61 6.13
78 79 2.049248 GGAACGAACGTACGGCCA 60.049 61.111 21.06 0.00 37.61 5.36
79 80 2.090524 GGAACGAACGTACGGCCAG 61.091 63.158 21.06 10.20 37.61 4.85
80 81 2.048877 AACGAACGTACGGCCAGG 60.049 61.111 21.06 6.38 37.61 4.45
81 82 4.729856 ACGAACGTACGGCCAGGC 62.730 66.667 21.06 1.26 37.61 4.85
82 83 4.430765 CGAACGTACGGCCAGGCT 62.431 66.667 21.06 0.00 0.00 4.58
83 84 2.813908 GAACGTACGGCCAGGCTG 60.814 66.667 19.77 19.77 41.29 4.85
99 100 2.740438 TGCCGAAGCAGCAGTACA 59.260 55.556 0.00 0.00 46.52 2.90
100 101 1.667830 TGCCGAAGCAGCAGTACAC 60.668 57.895 0.00 0.00 46.52 2.90
101 102 2.730672 GCCGAAGCAGCAGTACACG 61.731 63.158 0.00 0.00 39.53 4.49
102 103 1.372997 CCGAAGCAGCAGTACACGT 60.373 57.895 0.00 0.00 0.00 4.49
103 104 0.109458 CCGAAGCAGCAGTACACGTA 60.109 55.000 0.00 0.00 0.00 3.57
104 105 0.982673 CGAAGCAGCAGTACACGTAC 59.017 55.000 0.00 0.00 36.35 3.67
105 106 0.982673 GAAGCAGCAGTACACGTACG 59.017 55.000 15.01 15.01 40.80 3.67
106 107 0.313043 AAGCAGCAGTACACGTACGT 59.687 50.000 16.72 16.72 40.80 3.57
117 118 4.746951 CGTACGTGCGTGCTCGGA 62.747 66.667 18.32 9.09 37.27 4.55
118 119 2.202570 GTACGTGCGTGCTCGGAT 60.203 61.111 18.77 3.45 39.88 4.18
119 120 2.101575 TACGTGCGTGCTCGGATC 59.898 61.111 18.77 1.71 39.88 3.36
120 121 2.404186 TACGTGCGTGCTCGGATCT 61.404 57.895 18.77 2.47 39.88 2.75
121 122 2.592623 TACGTGCGTGCTCGGATCTG 62.593 60.000 18.77 0.00 39.88 2.90
122 123 2.181777 GTGCGTGCTCGGATCTGA 59.818 61.111 10.52 3.71 39.88 3.27
123 124 1.446099 GTGCGTGCTCGGATCTGAA 60.446 57.895 10.52 0.00 39.88 3.02
124 125 1.153765 TGCGTGCTCGGATCTGAAG 60.154 57.895 10.52 1.49 37.56 3.02
125 126 1.139734 GCGTGCTCGGATCTGAAGA 59.860 57.895 10.52 0.00 37.56 2.87
126 127 0.249238 GCGTGCTCGGATCTGAAGAT 60.249 55.000 10.52 0.00 36.06 2.40
127 128 1.001268 GCGTGCTCGGATCTGAAGATA 60.001 52.381 10.52 0.00 34.60 1.98
128 129 2.543861 GCGTGCTCGGATCTGAAGATAA 60.544 50.000 10.52 0.00 34.60 1.75
129 130 3.706698 CGTGCTCGGATCTGAAGATAAA 58.293 45.455 5.58 0.00 34.37 1.40
130 131 4.302455 CGTGCTCGGATCTGAAGATAAAT 58.698 43.478 5.58 0.00 34.37 1.40
131 132 4.747108 CGTGCTCGGATCTGAAGATAAATT 59.253 41.667 5.58 0.00 34.37 1.82
132 133 5.235186 CGTGCTCGGATCTGAAGATAAATTT 59.765 40.000 5.58 0.00 34.37 1.82
133 134 6.563010 CGTGCTCGGATCTGAAGATAAATTTC 60.563 42.308 5.58 0.00 34.37 2.17
134 135 5.463392 TGCTCGGATCTGAAGATAAATTTCG 59.537 40.000 5.58 0.00 34.37 3.46
135 136 5.463724 GCTCGGATCTGAAGATAAATTTCGT 59.536 40.000 5.58 0.00 34.37 3.85
136 137 6.641314 GCTCGGATCTGAAGATAAATTTCGTA 59.359 38.462 5.58 0.00 34.37 3.43
137 138 7.329717 GCTCGGATCTGAAGATAAATTTCGTAT 59.670 37.037 5.58 0.00 34.37 3.06
138 139 8.520835 TCGGATCTGAAGATAAATTTCGTATG 57.479 34.615 0.39 0.00 34.37 2.39
139 140 7.116376 TCGGATCTGAAGATAAATTTCGTATGC 59.884 37.037 0.39 0.00 34.37 3.14
140 141 7.522374 GGATCTGAAGATAAATTTCGTATGCC 58.478 38.462 0.00 0.00 34.37 4.40
141 142 7.173218 GGATCTGAAGATAAATTTCGTATGCCA 59.827 37.037 0.00 0.00 34.37 4.92
142 143 7.482654 TCTGAAGATAAATTTCGTATGCCAG 57.517 36.000 0.00 0.00 0.00 4.85
143 144 6.483307 TCTGAAGATAAATTTCGTATGCCAGG 59.517 38.462 0.00 0.00 0.00 4.45
144 145 6.119536 TGAAGATAAATTTCGTATGCCAGGT 58.880 36.000 0.00 0.00 0.00 4.00
145 146 6.260050 TGAAGATAAATTTCGTATGCCAGGTC 59.740 38.462 0.00 0.00 0.00 3.85
146 147 5.063880 AGATAAATTTCGTATGCCAGGTCC 58.936 41.667 0.00 0.00 0.00 4.46
147 148 1.663695 AATTTCGTATGCCAGGTCCG 58.336 50.000 0.00 0.00 0.00 4.79
148 149 0.179056 ATTTCGTATGCCAGGTCCGG 60.179 55.000 0.00 0.00 0.00 5.14
149 150 1.546589 TTTCGTATGCCAGGTCCGGT 61.547 55.000 0.00 0.00 0.00 5.28
150 151 1.952102 TTCGTATGCCAGGTCCGGTC 61.952 60.000 0.00 0.00 0.00 4.79
151 152 2.717044 CGTATGCCAGGTCCGGTCA 61.717 63.158 0.00 0.00 0.00 4.02
152 153 1.144057 GTATGCCAGGTCCGGTCAG 59.856 63.158 0.00 0.00 0.00 3.51
153 154 2.063979 TATGCCAGGTCCGGTCAGG 61.064 63.158 0.00 2.94 42.97 3.86
154 155 2.815684 TATGCCAGGTCCGGTCAGGT 62.816 60.000 0.00 0.00 41.99 4.00
155 156 4.394712 GCCAGGTCCGGTCAGGTG 62.395 72.222 0.00 0.00 41.99 4.00
156 157 3.706373 CCAGGTCCGGTCAGGTGG 61.706 72.222 0.00 0.08 41.99 4.61
157 158 4.394712 CAGGTCCGGTCAGGTGGC 62.395 72.222 0.00 0.00 41.99 5.01
160 161 3.948719 GTCCGGTCAGGTGGCCAA 61.949 66.667 7.24 0.00 40.62 4.52
161 162 3.636231 TCCGGTCAGGTGGCCAAG 61.636 66.667 7.24 0.00 40.62 3.61
162 163 4.722700 CCGGTCAGGTGGCCAAGG 62.723 72.222 7.24 0.00 40.62 3.61
165 166 4.643387 GTCAGGTGGCCAAGGCGT 62.643 66.667 7.24 0.00 43.06 5.68
166 167 4.329545 TCAGGTGGCCAAGGCGTC 62.330 66.667 7.24 0.00 43.06 5.19
167 168 4.641645 CAGGTGGCCAAGGCGTCA 62.642 66.667 7.24 0.00 43.06 4.35
168 169 4.335647 AGGTGGCCAAGGCGTCAG 62.336 66.667 7.24 0.00 43.06 3.51
169 170 4.643387 GGTGGCCAAGGCGTCAGT 62.643 66.667 7.24 0.00 43.06 3.41
170 171 3.050275 GTGGCCAAGGCGTCAGTC 61.050 66.667 7.24 0.00 43.06 3.51
171 172 3.555324 TGGCCAAGGCGTCAGTCA 61.555 61.111 0.61 0.00 43.06 3.41
172 173 2.743928 GGCCAAGGCGTCAGTCAG 60.744 66.667 4.80 0.00 43.06 3.51
173 174 2.031163 GCCAAGGCGTCAGTCAGT 59.969 61.111 0.00 0.00 0.00 3.41
174 175 2.029844 GCCAAGGCGTCAGTCAGTC 61.030 63.158 0.00 0.00 0.00 3.51
175 176 1.367471 CCAAGGCGTCAGTCAGTCA 59.633 57.895 0.00 0.00 0.00 3.41
176 177 0.946221 CCAAGGCGTCAGTCAGTCAC 60.946 60.000 0.00 0.00 0.00 3.67
177 178 0.032678 CAAGGCGTCAGTCAGTCACT 59.967 55.000 0.00 0.00 34.67 3.41
178 179 0.315568 AAGGCGTCAGTCAGTCACTC 59.684 55.000 0.00 0.00 30.26 3.51
179 180 0.538516 AGGCGTCAGTCAGTCACTCT 60.539 55.000 0.00 0.00 30.26 3.24
180 181 0.387878 GGCGTCAGTCAGTCACTCTG 60.388 60.000 0.00 0.00 44.85 3.35
181 182 0.312416 GCGTCAGTCAGTCACTCTGT 59.688 55.000 0.00 0.00 43.97 3.41
182 183 1.928152 GCGTCAGTCAGTCACTCTGTG 60.928 57.143 0.00 0.00 43.97 3.66
183 184 1.335182 CGTCAGTCAGTCACTCTGTGT 59.665 52.381 0.00 0.00 43.97 3.72
185 186 2.099921 GTCAGTCAGTCACTCTGTGTGT 59.900 50.000 9.41 0.00 46.27 3.72
186 187 2.099756 TCAGTCAGTCACTCTGTGTGTG 59.900 50.000 9.41 2.65 46.27 3.82
187 188 1.202463 AGTCAGTCACTCTGTGTGTGC 60.202 52.381 9.41 4.88 46.27 4.57
188 189 0.249031 TCAGTCACTCTGTGTGTGCG 60.249 55.000 9.41 0.72 46.27 5.34
189 190 1.592669 AGTCACTCTGTGTGTGCGC 60.593 57.895 0.00 0.00 46.27 6.09
190 191 2.658268 TCACTCTGTGTGTGCGCG 60.658 61.111 0.00 0.00 46.27 6.86
191 192 4.360027 CACTCTGTGTGTGCGCGC 62.360 66.667 27.26 27.26 41.53 6.86
211 212 2.383527 CGAGCGTGGCCAGAAAGTC 61.384 63.158 5.11 0.00 0.00 3.01
217 218 2.046217 GGCCAGAAAGTCGGGGAC 60.046 66.667 0.00 0.00 32.07 4.46
254 255 2.689175 GCATGGGGATGGGGTTCA 59.311 61.111 0.00 0.00 0.00 3.18
260 261 0.407918 GGGGATGGGGTTCACTTTGA 59.592 55.000 0.00 0.00 0.00 2.69
262 263 1.616994 GGGATGGGGTTCACTTTGAGG 60.617 57.143 0.00 0.00 0.00 3.86
264 265 0.779997 ATGGGGTTCACTTTGAGGCT 59.220 50.000 0.00 0.00 0.00 4.58
266 267 0.609406 GGGGTTCACTTTGAGGCTCC 60.609 60.000 12.86 0.00 0.00 4.70
379 404 4.736896 GCGACCCCACGAGTCCAC 62.737 72.222 0.00 0.00 35.09 4.02
483 527 1.901085 GAGTCTTGAGCCCCACGAT 59.099 57.895 0.00 0.00 0.00 3.73
485 529 1.153349 GTCTTGAGCCCCACGATCC 60.153 63.158 0.00 0.00 0.00 3.36
490 534 1.301009 GAGCCCCACGATCCGAATC 60.301 63.158 0.00 0.00 0.00 2.52
517 567 0.096802 TGCAATCACGCACGCATTAG 59.903 50.000 0.00 0.00 36.86 1.73
537 595 4.895668 AGTTCATCACCGTAACCCTAAA 57.104 40.909 0.00 0.00 0.00 1.85
549 613 4.153835 CGTAACCCTAAACCGTATGCAAAA 59.846 41.667 0.00 0.00 0.00 2.44
590 654 2.388232 CCCTTGCTAACACGGACGC 61.388 63.158 0.00 0.00 37.39 5.19
670 749 5.950758 AAATTACACATTTACACTGCCGA 57.049 34.783 0.00 0.00 0.00 5.54
671 750 4.939509 ATTACACATTTACACTGCCGAC 57.060 40.909 0.00 0.00 0.00 4.79
672 751 2.543777 ACACATTTACACTGCCGACT 57.456 45.000 0.00 0.00 0.00 4.18
673 752 2.143122 ACACATTTACACTGCCGACTG 58.857 47.619 0.00 0.00 0.00 3.51
674 753 1.464608 CACATTTACACTGCCGACTGG 59.535 52.381 0.00 0.00 38.77 4.00
689 768 0.035458 ACTGGCTGTACTCCACAAGC 59.965 55.000 0.00 0.00 36.48 4.01
693 772 0.035056 GCTGTACTCCACAAGCCCAT 60.035 55.000 0.00 0.00 36.48 4.00
694 773 1.209504 GCTGTACTCCACAAGCCCATA 59.790 52.381 0.00 0.00 36.48 2.74
695 774 2.906354 CTGTACTCCACAAGCCCATAC 58.094 52.381 0.00 0.00 36.48 2.39
721 800 6.954487 TCCTACTGTCTTCGCATTAAGATA 57.046 37.500 0.00 0.00 37.78 1.98
722 801 7.526142 TCCTACTGTCTTCGCATTAAGATAT 57.474 36.000 0.00 0.00 37.78 1.63
772 852 4.436998 GAGGCCTGCGTGCGTACT 62.437 66.667 12.00 0.00 0.00 2.73
773 853 4.436998 AGGCCTGCGTGCGTACTC 62.437 66.667 3.11 0.00 0.00 2.59
775 855 4.436998 GCCTGCGTGCGTACTCCT 62.437 66.667 1.24 0.00 0.00 3.69
776 856 3.060020 GCCTGCGTGCGTACTCCTA 62.060 63.158 1.24 0.00 0.00 2.94
795 875 3.488090 GTGCGTACGCCAGGAAGC 61.488 66.667 35.11 13.71 41.09 3.86
805 885 0.106521 GCCAGGAAGCCAGAGAGATC 59.893 60.000 0.00 0.00 0.00 2.75
824 907 2.447443 TCTCGTCAGGCAGTAATGAGT 58.553 47.619 0.00 0.00 0.00 3.41
867 958 2.044946 AGCCCCGAGATGCAAACC 60.045 61.111 0.00 0.00 0.00 3.27
904 995 0.998727 CGCAACGCAAAGCTTTCCTC 60.999 55.000 9.23 0.66 0.00 3.71
909 1000 1.270147 ACGCAAAGCTTTCCTCTACGT 60.270 47.619 9.23 9.50 0.00 3.57
925 1016 2.872925 GTACGCACGCACGATCGT 60.873 61.111 16.60 16.60 44.35 3.73
926 1017 2.574999 TACGCACGCACGATCGTC 60.575 61.111 19.84 12.31 41.21 4.20
986 1080 0.610785 ATAAAACCACCCCACCTGCG 60.611 55.000 0.00 0.00 0.00 5.18
1107 1207 0.462759 CCATGCCGAGGTCTTCTTCC 60.463 60.000 0.00 0.00 0.00 3.46
1108 1208 0.539051 CATGCCGAGGTCTTCTTCCT 59.461 55.000 0.00 0.00 38.09 3.36
1109 1209 0.827368 ATGCCGAGGTCTTCTTCCTC 59.173 55.000 2.27 2.27 45.56 3.71
1110 1210 1.258445 TGCCGAGGTCTTCTTCCTCC 61.258 60.000 6.42 0.00 46.09 4.30
1111 1211 1.962321 GCCGAGGTCTTCTTCCTCCC 61.962 65.000 6.42 0.00 46.09 4.30
1112 1212 1.331399 CCGAGGTCTTCTTCCTCCCC 61.331 65.000 6.42 0.00 46.09 4.81
1113 1213 1.668101 CGAGGTCTTCTTCCTCCCCG 61.668 65.000 6.42 0.00 46.09 5.73
1114 1214 0.615261 GAGGTCTTCTTCCTCCCCGT 60.615 60.000 0.98 0.00 43.90 5.28
1115 1215 0.615261 AGGTCTTCTTCCTCCCCGTC 60.615 60.000 0.00 0.00 0.00 4.79
1116 1216 1.615165 GGTCTTCTTCCTCCCCGTCC 61.615 65.000 0.00 0.00 0.00 4.79
1117 1217 0.615261 GTCTTCTTCCTCCCCGTCCT 60.615 60.000 0.00 0.00 0.00 3.85
1118 1218 0.324460 TCTTCTTCCTCCCCGTCCTC 60.324 60.000 0.00 0.00 0.00 3.71
1119 1219 1.305887 TTCTTCCTCCCCGTCCTCC 60.306 63.158 0.00 0.00 0.00 4.30
1120 1220 1.812113 TTCTTCCTCCCCGTCCTCCT 61.812 60.000 0.00 0.00 0.00 3.69
1121 1221 2.038975 TTCCTCCCCGTCCTCCTG 59.961 66.667 0.00 0.00 0.00 3.86
1176 1276 4.504916 CTCTCCCTGCCGCTCACG 62.505 72.222 0.00 0.00 39.67 4.35
1485 1597 4.803426 CGGGCTCTGCAGGACGAC 62.803 72.222 15.13 4.83 0.00 4.34
1486 1598 4.803426 GGGCTCTGCAGGACGACG 62.803 72.222 15.13 0.00 0.00 5.12
1487 1599 3.749064 GGCTCTGCAGGACGACGA 61.749 66.667 15.13 0.00 0.00 4.20
1488 1600 2.258591 GCTCTGCAGGACGACGAA 59.741 61.111 15.13 0.00 0.00 3.85
1535 1650 2.202518 GTACGGCGAGCAAGCGTA 60.203 61.111 16.62 0.00 38.18 4.42
1537 1652 3.688475 TACGGCGAGCAAGCGTACC 62.688 63.158 16.62 0.00 38.18 3.34
1545 1660 3.179265 CAAGCGTACCACGGCGAG 61.179 66.667 16.62 5.31 42.82 5.03
1546 1661 4.430765 AAGCGTACCACGGCGAGG 62.431 66.667 21.92 21.92 42.82 4.63
1548 1663 4.849329 GCGTACCACGGCGAGGAG 62.849 72.222 29.75 19.35 42.82 3.69
1549 1664 4.189188 CGTACCACGGCGAGGAGG 62.189 72.222 29.75 18.72 38.08 4.30
1550 1665 2.753043 GTACCACGGCGAGGAGGA 60.753 66.667 29.75 11.42 0.00 3.71
1551 1666 2.439701 TACCACGGCGAGGAGGAG 60.440 66.667 29.75 3.07 0.00 3.69
1554 1669 3.522731 CACGGCGAGGAGGAGGAG 61.523 72.222 16.62 0.00 0.00 3.69
1563 1678 0.330431 AGGAGGAGGAGGAGGAGGAT 60.330 60.000 0.00 0.00 0.00 3.24
1583 1698 0.610687 GAGGAAGTGGAGGTGGAGTG 59.389 60.000 0.00 0.00 0.00 3.51
1590 1705 4.459089 GAGGTGGAGTGCGAGGGC 62.459 72.222 0.00 0.00 40.52 5.19
1686 1801 0.610785 GGCGCCTCCTCTAGCTCTAT 60.611 60.000 22.15 0.00 0.00 1.98
1741 1861 2.584791 CATTTCGCCTTCGTTTCTTGG 58.415 47.619 0.00 0.00 36.96 3.61
1748 1872 1.266989 CCTTCGTTTCTTGGTCTTGGC 59.733 52.381 0.00 0.00 0.00 4.52
1807 1931 3.243068 GGTTACAGTGTGTTTGCTCTTGG 60.243 47.826 5.88 0.00 0.00 3.61
1814 1938 2.092429 TGTGTTTGCTCTTGGTTCCTCT 60.092 45.455 0.00 0.00 0.00 3.69
1815 1939 2.550180 GTGTTTGCTCTTGGTTCCTCTC 59.450 50.000 0.00 0.00 0.00 3.20
1827 1951 0.880278 TTCCTCTCGCACAGTGTTGC 60.880 55.000 1.61 0.00 39.28 4.17
1841 1965 5.330271 CAGTGTTGCTGTTCAAGTAGTAC 57.670 43.478 0.00 0.00 40.27 2.73
1894 2018 4.469586 ACCCAAAATTCCTTGTTGTTGACT 59.530 37.500 0.00 0.00 0.00 3.41
1898 2022 6.371271 CCAAAATTCCTTGTTGTTGACTTTGT 59.629 34.615 0.00 0.00 0.00 2.83
1906 2030 2.645730 TGTTGACTTTGTTGTGGTGC 57.354 45.000 0.00 0.00 0.00 5.01
1914 2038 4.932146 ACTTTGTTGTGGTGCTGATAAAC 58.068 39.130 0.00 0.00 0.00 2.01
1918 2042 3.002862 TGTTGTGGTGCTGATAAACGTTC 59.997 43.478 0.00 0.00 0.00 3.95
1940 2064 7.360101 CGTTCTCCGAGTTCAAATCTGTATTTT 60.360 37.037 0.00 0.00 39.56 1.82
1947 2071 7.478667 CGAGTTCAAATCTGTATTTTGTGCTAC 59.521 37.037 0.00 0.00 35.90 3.58
1963 2094 5.111989 TGTGCTACTATTCTTCAGTCATGC 58.888 41.667 0.00 0.00 0.00 4.06
1968 2099 4.511527 ACTATTCTTCAGTCATGCCAGTG 58.488 43.478 0.00 0.00 0.00 3.66
1971 2102 1.642037 CTTCAGTCATGCCAGTGCGG 61.642 60.000 0.00 0.00 41.78 5.69
1990 2126 1.267532 GGCACGCGTTACAGATTCATG 60.268 52.381 10.22 0.00 0.00 3.07
2019 2155 5.681982 CCGTTCGAGTTCAGTTGTCTATATC 59.318 44.000 0.00 0.00 0.00 1.63
2020 2156 5.681982 CGTTCGAGTTCAGTTGTCTATATCC 59.318 44.000 0.00 0.00 0.00 2.59
2021 2157 6.561614 GTTCGAGTTCAGTTGTCTATATCCA 58.438 40.000 0.00 0.00 0.00 3.41
2024 2160 7.782049 TCGAGTTCAGTTGTCTATATCCATTT 58.218 34.615 0.00 0.00 0.00 2.32
2025 2161 8.909923 TCGAGTTCAGTTGTCTATATCCATTTA 58.090 33.333 0.00 0.00 0.00 1.40
2026 2162 9.529325 CGAGTTCAGTTGTCTATATCCATTTAA 57.471 33.333 0.00 0.00 0.00 1.52
2086 2246 1.283613 TCATGGGAAAGTTGGCCGTAT 59.716 47.619 0.00 0.00 0.00 3.06
2135 2297 3.217231 CGGTTGCCGTATCTCCCT 58.783 61.111 0.00 0.00 42.73 4.20
2260 2437 0.321298 GCCTGTTTCCTGCCGAGTTA 60.321 55.000 0.00 0.00 0.00 2.24
2263 2440 3.869065 CCTGTTTCCTGCCGAGTTATTA 58.131 45.455 0.00 0.00 0.00 0.98
2269 2446 6.759827 TGTTTCCTGCCGAGTTATTATACTTC 59.240 38.462 0.00 0.00 0.00 3.01
2294 2472 1.416401 ACTCGAGCAAGTCCAGGAAAA 59.584 47.619 13.61 0.00 0.00 2.29
2314 2492 5.616488 AAATGCAGCATTGAAAATTCCAC 57.384 34.783 21.56 0.00 34.04 4.02
2316 2494 2.367894 TGCAGCATTGAAAATTCCACCA 59.632 40.909 0.00 0.00 0.00 4.17
2317 2495 3.008157 TGCAGCATTGAAAATTCCACCAT 59.992 39.130 0.00 0.00 0.00 3.55
2322 2500 3.574284 TTGAAAATTCCACCATGCTCG 57.426 42.857 0.00 0.00 0.00 5.03
2324 2502 1.202114 GAAAATTCCACCATGCTCGCA 59.798 47.619 0.00 0.00 0.00 5.10
2325 2503 1.255882 AAATTCCACCATGCTCGCAA 58.744 45.000 0.00 0.00 0.00 4.85
2326 2504 0.813184 AATTCCACCATGCTCGCAAG 59.187 50.000 0.00 0.00 0.00 4.01
2403 2582 4.258543 TGAGACAAAGGTGTTCTCGTTTT 58.741 39.130 0.00 0.00 38.41 2.43
2411 2590 2.548480 GGTGTTCTCGTTTTTCAGAGGG 59.452 50.000 0.00 0.00 35.34 4.30
2412 2591 3.463944 GTGTTCTCGTTTTTCAGAGGGA 58.536 45.455 0.00 0.00 35.34 4.20
2421 2600 4.309933 GTTTTTCAGAGGGATTTGCAAGG 58.690 43.478 0.00 0.00 0.00 3.61
2431 2610 4.819783 TTGCAAGGTCCGCAAGAT 57.180 50.000 0.00 0.00 44.13 2.40
2437 2616 2.224161 GCAAGGTCCGCAAGATAGATCT 60.224 50.000 0.00 0.00 43.02 2.75
2442 2621 3.570559 GTCCGCAAGATAGATCTAGCAC 58.429 50.000 19.62 7.98 43.02 4.40
2446 2625 4.811024 CCGCAAGATAGATCTAGCACAAAA 59.189 41.667 19.62 0.00 43.02 2.44
2449 2628 5.238214 GCAAGATAGATCTAGCACAAAAGGG 59.762 44.000 19.62 1.85 35.76 3.95
2451 2630 6.814954 AGATAGATCTAGCACAAAAGGGAA 57.185 37.500 19.62 0.00 34.85 3.97
2452 2631 6.825610 AGATAGATCTAGCACAAAAGGGAAG 58.174 40.000 19.62 0.00 34.85 3.46
2453 2632 3.615155 AGATCTAGCACAAAAGGGAAGC 58.385 45.455 0.00 0.00 0.00 3.86
2454 2633 2.949177 TCTAGCACAAAAGGGAAGCA 57.051 45.000 0.00 0.00 0.00 3.91
2469 2745 3.366781 GGGAAGCAGAAAGATGTTTGAGC 60.367 47.826 0.00 0.00 0.00 4.26
2471 2747 1.198637 AGCAGAAAGATGTTTGAGCGC 59.801 47.619 0.00 0.00 30.82 5.92
2472 2748 1.069022 GCAGAAAGATGTTTGAGCGCA 60.069 47.619 11.47 0.00 0.00 6.09
2479 2755 3.534554 AGATGTTTGAGCGCATGATGTA 58.465 40.909 11.47 0.00 0.00 2.29
2495 2771 1.518325 TGTACGTGCCAGATTTGGTG 58.482 50.000 3.90 0.00 46.80 4.17
2510 2786 7.433131 CCAGATTTGGTGATATTTGAACATTCG 59.567 37.037 0.00 0.00 39.79 3.34
2511 2787 8.183536 CAGATTTGGTGATATTTGAACATTCGA 58.816 33.333 0.00 0.00 0.00 3.71
2513 2789 6.435430 TTGGTGATATTTGAACATTCGAGG 57.565 37.500 0.00 0.00 0.00 4.63
2562 2841 9.574458 TTCGTGTCAAGAAATATTTGAAAAACA 57.426 25.926 5.17 1.27 36.41 2.83
2563 2842 9.574458 TCGTGTCAAGAAATATTTGAAAAACAA 57.426 25.926 5.17 0.00 36.41 2.83
2584 2863 1.901591 ACTTCACAGTTCATGCCTGG 58.098 50.000 14.33 0.00 34.16 4.45
2588 2867 3.159213 TCACAGTTCATGCCTGGATTT 57.841 42.857 14.33 0.00 34.16 2.17
2617 2896 2.753966 CCGTGCGCTCTTGGAATGG 61.754 63.158 9.73 0.00 0.00 3.16
2641 2920 4.334759 CCAAACATCACCAAATTTTGCACA 59.665 37.500 3.50 0.00 0.00 4.57
2649 2928 5.064452 TCACCAAATTTTGCACAAACATCAC 59.936 36.000 3.50 0.00 0.00 3.06
2673 2954 3.890145 TGCACATCGCTTGCAAAAT 57.110 42.105 0.00 0.00 46.90 1.82
2678 2959 4.689812 TGCACATCGCTTGCAAAATAAATT 59.310 33.333 0.00 0.00 46.90 1.82
2680 2961 5.163972 GCACATCGCTTGCAAAATAAATTCA 60.164 36.000 0.00 0.00 39.93 2.57
2681 2962 6.463478 CACATCGCTTGCAAAATAAATTCAG 58.537 36.000 0.00 0.00 0.00 3.02
2682 2963 6.308524 CACATCGCTTGCAAAATAAATTCAGA 59.691 34.615 0.00 0.00 0.00 3.27
2683 2964 6.867816 ACATCGCTTGCAAAATAAATTCAGAA 59.132 30.769 0.00 0.00 0.00 3.02
2714 2995 8.164153 TCTATTTTTAATCGCGTTACTGTTCAC 58.836 33.333 5.77 0.00 0.00 3.18
2716 2997 2.157834 AATCGCGTTACTGTTCACCA 57.842 45.000 5.77 0.00 0.00 4.17
2728 3009 1.699083 TGTTCACCAGGCTCATCTGAA 59.301 47.619 0.00 0.00 36.93 3.02
2731 3012 1.002430 TCACCAGGCTCATCTGAACAC 59.998 52.381 0.00 0.00 36.93 3.32
2735 3016 1.134580 CAGGCTCATCTGAACACGGAT 60.135 52.381 0.00 0.00 36.93 4.18
2737 3018 2.968574 AGGCTCATCTGAACACGGATAT 59.031 45.455 0.00 0.00 0.00 1.63
2749 3030 8.156820 TCTGAACACGGATATCAAATTGGATAT 58.843 33.333 14.18 14.18 41.87 1.63
2754 3035 9.958180 ACACGGATATCAAATTGGATATTCATA 57.042 29.630 17.85 0.00 39.85 2.15
2807 3094 2.146146 GAGGCCGGGGGTTTAACCTT 62.146 60.000 14.27 0.00 38.64 3.50
2811 3098 1.830279 CCGGGGGTTTAACCTTCTTC 58.170 55.000 14.27 0.00 38.64 2.87
2814 3101 2.226962 GGGGTTTAACCTTCTTCCCC 57.773 55.000 14.27 0.76 46.11 4.81
2881 3182 1.202627 GCAAAATGGCCTTGGACAACA 60.203 47.619 3.32 0.00 0.00 3.33
2896 3197 1.066858 ACAACATACACAGGAGCTCCG 60.067 52.381 26.95 22.44 42.08 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.513895 CCTCGGGTGGTTGTGGTT 59.486 61.111 0.00 0.00 0.00 3.67
1 2 3.566210 CCCTCGGGTGGTTGTGGT 61.566 66.667 0.00 0.00 0.00 4.16
2 3 3.246112 TCCCTCGGGTGGTTGTGG 61.246 66.667 1.18 0.00 36.47 4.17
3 4 2.032071 GTCCCTCGGGTGGTTGTG 59.968 66.667 1.18 0.00 36.47 3.33
4 5 2.122547 AGTCCCTCGGGTGGTTGT 60.123 61.111 1.18 0.00 36.47 3.32
5 6 2.347490 CAGTCCCTCGGGTGGTTG 59.653 66.667 1.18 0.00 36.47 3.77
6 7 2.928396 CCAGTCCCTCGGGTGGTT 60.928 66.667 1.18 0.00 36.47 3.67
7 8 3.907027 CTCCAGTCCCTCGGGTGGT 62.907 68.421 10.48 0.00 36.47 4.16
8 9 3.077556 CTCCAGTCCCTCGGGTGG 61.078 72.222 1.18 3.63 36.47 4.61
9 10 2.283966 ACTCCAGTCCCTCGGGTG 60.284 66.667 1.18 0.00 36.47 4.61
10 11 2.283966 CACTCCAGTCCCTCGGGT 60.284 66.667 1.18 0.00 36.47 5.28
11 12 0.978146 ATTCACTCCAGTCCCTCGGG 60.978 60.000 0.00 0.00 0.00 5.14
12 13 0.176680 CATTCACTCCAGTCCCTCGG 59.823 60.000 0.00 0.00 0.00 4.63
13 14 0.460987 GCATTCACTCCAGTCCCTCG 60.461 60.000 0.00 0.00 0.00 4.63
14 15 0.460987 CGCATTCACTCCAGTCCCTC 60.461 60.000 0.00 0.00 0.00 4.30
15 16 1.599047 CGCATTCACTCCAGTCCCT 59.401 57.895 0.00 0.00 0.00 4.20
16 17 1.450312 CCGCATTCACTCCAGTCCC 60.450 63.158 0.00 0.00 0.00 4.46
17 18 0.179000 ATCCGCATTCACTCCAGTCC 59.821 55.000 0.00 0.00 0.00 3.85
18 19 1.576356 GATCCGCATTCACTCCAGTC 58.424 55.000 0.00 0.00 0.00 3.51
19 20 0.179000 GGATCCGCATTCACTCCAGT 59.821 55.000 0.00 0.00 0.00 4.00
20 21 0.178767 TGGATCCGCATTCACTCCAG 59.821 55.000 7.39 0.00 32.39 3.86
21 22 0.178767 CTGGATCCGCATTCACTCCA 59.821 55.000 7.39 0.00 34.88 3.86
22 23 1.162800 GCTGGATCCGCATTCACTCC 61.163 60.000 19.44 0.00 0.00 3.85
23 24 1.493950 CGCTGGATCCGCATTCACTC 61.494 60.000 22.50 0.00 0.00 3.51
24 25 1.522355 CGCTGGATCCGCATTCACT 60.522 57.895 22.50 0.00 0.00 3.41
25 26 1.521457 TCGCTGGATCCGCATTCAC 60.521 57.895 22.50 1.99 0.00 3.18
26 27 1.521457 GTCGCTGGATCCGCATTCA 60.521 57.895 22.50 6.10 0.00 2.57
27 28 1.227380 AGTCGCTGGATCCGCATTC 60.227 57.895 22.50 14.02 0.00 2.67
28 29 1.522355 CAGTCGCTGGATCCGCATT 60.522 57.895 22.50 9.03 0.00 3.56
29 30 1.960040 TTCAGTCGCTGGATCCGCAT 61.960 55.000 22.50 9.58 31.51 4.73
30 31 1.960040 ATTCAGTCGCTGGATCCGCA 61.960 55.000 22.50 11.06 31.51 5.69
31 32 0.811616 AATTCAGTCGCTGGATCCGC 60.812 55.000 15.81 15.81 26.49 5.54
32 33 1.212616 GAATTCAGTCGCTGGATCCG 58.787 55.000 7.39 3.14 26.49 4.18
33 34 2.208431 CTGAATTCAGTCGCTGGATCC 58.792 52.381 24.65 4.20 39.09 3.36
34 35 1.596727 GCTGAATTCAGTCGCTGGATC 59.403 52.381 30.88 11.68 45.45 3.36
35 36 1.661341 GCTGAATTCAGTCGCTGGAT 58.339 50.000 30.88 1.58 45.45 3.41
36 37 0.391661 GGCTGAATTCAGTCGCTGGA 60.392 55.000 30.88 0.00 45.45 3.86
37 38 2.093216 GGCTGAATTCAGTCGCTGG 58.907 57.895 30.88 10.26 45.45 4.85
42 43 1.424493 CTCGCCGGCTGAATTCAGTC 61.424 60.000 30.88 28.93 45.45 3.51
43 44 1.448540 CTCGCCGGCTGAATTCAGT 60.449 57.895 30.88 0.00 45.45 3.41
44 45 2.176273 CCTCGCCGGCTGAATTCAG 61.176 63.158 27.82 27.82 46.40 3.02
45 46 2.125147 CCTCGCCGGCTGAATTCA 60.125 61.111 26.68 8.12 0.00 2.57
46 47 1.449601 TTCCTCGCCGGCTGAATTC 60.450 57.895 26.68 0.00 0.00 2.17
47 48 1.745489 GTTCCTCGCCGGCTGAATT 60.745 57.895 26.68 0.00 0.00 2.17
48 49 2.125106 GTTCCTCGCCGGCTGAAT 60.125 61.111 26.68 0.00 0.00 2.57
49 50 4.735132 CGTTCCTCGCCGGCTGAA 62.735 66.667 26.68 20.47 0.00 3.02
51 52 4.735132 TTCGTTCCTCGCCGGCTG 62.735 66.667 26.68 18.23 39.67 4.85
52 53 4.736896 GTTCGTTCCTCGCCGGCT 62.737 66.667 26.68 0.00 39.67 5.52
54 55 3.326889 TACGTTCGTTCCTCGCCGG 62.327 63.158 0.00 0.00 39.67 6.13
55 56 2.148365 GTACGTTCGTTCCTCGCCG 61.148 63.158 2.62 0.00 39.67 6.46
56 57 2.148365 CGTACGTTCGTTCCTCGCC 61.148 63.158 7.22 0.00 39.67 5.54
57 58 2.148365 CCGTACGTTCGTTCCTCGC 61.148 63.158 15.21 0.00 39.67 5.03
58 59 2.148365 GCCGTACGTTCGTTCCTCG 61.148 63.158 15.21 0.00 41.41 4.63
59 60 1.803117 GGCCGTACGTTCGTTCCTC 60.803 63.158 15.21 0.00 0.00 3.71
60 61 2.259511 GGCCGTACGTTCGTTCCT 59.740 61.111 15.21 0.00 0.00 3.36
61 62 2.049248 TGGCCGTACGTTCGTTCC 60.049 61.111 15.21 13.53 0.00 3.62
62 63 2.090524 CCTGGCCGTACGTTCGTTC 61.091 63.158 15.21 5.76 0.00 3.95
63 64 2.048877 CCTGGCCGTACGTTCGTT 60.049 61.111 15.21 0.00 0.00 3.85
64 65 4.729856 GCCTGGCCGTACGTTCGT 62.730 66.667 15.21 2.91 0.00 3.85
65 66 4.430765 AGCCTGGCCGTACGTTCG 62.431 66.667 16.57 7.68 0.00 3.95
66 67 2.813908 CAGCCTGGCCGTACGTTC 60.814 66.667 16.57 6.34 0.00 3.95
83 84 2.730672 CGTGTACTGCTGCTTCGGC 61.731 63.158 0.00 0.00 42.19 5.54
84 85 0.109458 TACGTGTACTGCTGCTTCGG 60.109 55.000 0.00 0.00 0.00 4.30
85 86 0.982673 GTACGTGTACTGCTGCTTCG 59.017 55.000 0.00 0.00 33.45 3.79
86 87 0.982673 CGTACGTGTACTGCTGCTTC 59.017 55.000 7.22 0.00 34.04 3.86
87 88 0.313043 ACGTACGTGTACTGCTGCTT 59.687 50.000 22.14 0.00 34.04 3.91
88 89 0.386858 CACGTACGTGTACTGCTGCT 60.387 55.000 34.48 0.25 40.91 4.24
89 90 1.941476 GCACGTACGTGTACTGCTGC 61.941 60.000 39.56 24.48 46.90 5.25
90 91 1.661948 CGCACGTACGTGTACTGCTG 61.662 60.000 39.56 21.61 46.90 4.41
91 92 1.441515 CGCACGTACGTGTACTGCT 60.442 57.895 39.56 7.59 46.90 4.24
92 93 1.727022 ACGCACGTACGTGTACTGC 60.727 57.895 39.56 27.88 46.28 4.40
93 94 4.520618 ACGCACGTACGTGTACTG 57.479 55.556 39.56 29.77 46.28 2.74
100 101 4.746951 TCCGAGCACGCACGTACG 62.747 66.667 15.01 15.01 38.29 3.67
101 102 2.202570 ATCCGAGCACGCACGTAC 60.203 61.111 8.01 0.00 38.29 3.67
102 103 2.101575 GATCCGAGCACGCACGTA 59.898 61.111 8.01 0.00 38.29 3.57
103 104 3.749064 AGATCCGAGCACGCACGT 61.749 61.111 8.01 0.00 38.29 4.49
104 105 3.250323 CAGATCCGAGCACGCACG 61.250 66.667 0.00 1.68 38.29 5.34
105 106 1.416813 CTTCAGATCCGAGCACGCAC 61.417 60.000 0.00 0.00 38.29 5.34
106 107 1.153765 CTTCAGATCCGAGCACGCA 60.154 57.895 0.00 0.00 38.29 5.24
107 108 0.249238 ATCTTCAGATCCGAGCACGC 60.249 55.000 0.00 0.00 38.29 5.34
108 109 3.355626 TTATCTTCAGATCCGAGCACG 57.644 47.619 0.00 0.00 36.05 5.34
109 110 6.563010 CGAAATTTATCTTCAGATCCGAGCAC 60.563 42.308 0.00 0.00 36.05 4.40
110 111 5.463392 CGAAATTTATCTTCAGATCCGAGCA 59.537 40.000 0.00 0.00 36.05 4.26
111 112 5.463724 ACGAAATTTATCTTCAGATCCGAGC 59.536 40.000 0.00 0.00 36.05 5.03
112 113 8.642885 CATACGAAATTTATCTTCAGATCCGAG 58.357 37.037 0.00 0.00 36.05 4.63
113 114 7.116376 GCATACGAAATTTATCTTCAGATCCGA 59.884 37.037 0.00 0.00 36.05 4.55
114 115 7.230222 GCATACGAAATTTATCTTCAGATCCG 58.770 38.462 0.00 0.00 36.05 4.18
115 116 7.173218 TGGCATACGAAATTTATCTTCAGATCC 59.827 37.037 0.00 0.00 36.05 3.36
116 117 8.087982 TGGCATACGAAATTTATCTTCAGATC 57.912 34.615 0.00 0.00 36.05 2.75
117 118 7.173907 CCTGGCATACGAAATTTATCTTCAGAT 59.826 37.037 0.00 0.00 38.51 2.90
118 119 6.483307 CCTGGCATACGAAATTTATCTTCAGA 59.517 38.462 0.00 0.00 0.00 3.27
119 120 6.260936 ACCTGGCATACGAAATTTATCTTCAG 59.739 38.462 0.00 0.00 0.00 3.02
120 121 6.119536 ACCTGGCATACGAAATTTATCTTCA 58.880 36.000 0.00 0.00 0.00 3.02
121 122 6.293462 GGACCTGGCATACGAAATTTATCTTC 60.293 42.308 0.00 0.00 0.00 2.87
122 123 5.531287 GGACCTGGCATACGAAATTTATCTT 59.469 40.000 0.00 0.00 0.00 2.40
123 124 5.063880 GGACCTGGCATACGAAATTTATCT 58.936 41.667 0.00 0.00 0.00 1.98
124 125 4.084013 CGGACCTGGCATACGAAATTTATC 60.084 45.833 0.00 0.00 0.00 1.75
125 126 3.813166 CGGACCTGGCATACGAAATTTAT 59.187 43.478 0.00 0.00 0.00 1.40
126 127 3.199677 CGGACCTGGCATACGAAATTTA 58.800 45.455 0.00 0.00 0.00 1.40
127 128 2.014128 CGGACCTGGCATACGAAATTT 58.986 47.619 0.00 0.00 0.00 1.82
128 129 1.663695 CGGACCTGGCATACGAAATT 58.336 50.000 0.00 0.00 0.00 1.82
129 130 0.179056 CCGGACCTGGCATACGAAAT 60.179 55.000 0.00 0.00 0.00 2.17
130 131 1.219664 CCGGACCTGGCATACGAAA 59.780 57.895 0.00 0.00 0.00 3.46
131 132 1.952102 GACCGGACCTGGCATACGAA 61.952 60.000 9.46 0.00 0.00 3.85
132 133 2.363276 ACCGGACCTGGCATACGA 60.363 61.111 9.46 0.00 0.00 3.43
133 134 2.106332 GACCGGACCTGGCATACG 59.894 66.667 9.46 0.00 0.00 3.06
134 135 1.144057 CTGACCGGACCTGGCATAC 59.856 63.158 9.46 0.00 0.00 2.39
135 136 2.063979 CCTGACCGGACCTGGCATA 61.064 63.158 9.46 0.00 33.16 3.14
136 137 3.402681 CCTGACCGGACCTGGCAT 61.403 66.667 9.46 0.00 33.16 4.40
137 138 4.954118 ACCTGACCGGACCTGGCA 62.954 66.667 9.46 0.00 36.31 4.92
138 139 4.394712 CACCTGACCGGACCTGGC 62.395 72.222 9.46 0.00 36.31 4.85
139 140 3.706373 CCACCTGACCGGACCTGG 61.706 72.222 9.46 15.21 36.31 4.45
140 141 4.394712 GCCACCTGACCGGACCTG 62.395 72.222 9.46 3.33 36.31 4.00
143 144 3.901797 CTTGGCCACCTGACCGGAC 62.902 68.421 9.46 1.07 36.31 4.79
144 145 3.636231 CTTGGCCACCTGACCGGA 61.636 66.667 9.46 0.00 36.31 5.14
145 146 4.722700 CCTTGGCCACCTGACCGG 62.723 72.222 3.88 0.00 39.35 5.28
148 149 4.643387 ACGCCTTGGCCACCTGAC 62.643 66.667 3.88 0.00 0.00 3.51
149 150 4.329545 GACGCCTTGGCCACCTGA 62.330 66.667 3.88 0.00 0.00 3.86
150 151 4.641645 TGACGCCTTGGCCACCTG 62.642 66.667 3.88 0.00 0.00 4.00
151 152 4.335647 CTGACGCCTTGGCCACCT 62.336 66.667 3.88 0.00 0.00 4.00
152 153 4.643387 ACTGACGCCTTGGCCACC 62.643 66.667 3.88 0.00 0.00 4.61
153 154 3.050275 GACTGACGCCTTGGCCAC 61.050 66.667 3.88 0.00 0.00 5.01
154 155 3.535629 CTGACTGACGCCTTGGCCA 62.536 63.158 0.00 0.00 0.00 5.36
155 156 2.743928 CTGACTGACGCCTTGGCC 60.744 66.667 6.02 0.00 0.00 5.36
156 157 2.029844 GACTGACTGACGCCTTGGC 61.030 63.158 0.75 0.75 0.00 4.52
157 158 0.946221 GTGACTGACTGACGCCTTGG 60.946 60.000 0.00 0.00 0.00 3.61
158 159 0.032678 AGTGACTGACTGACGCCTTG 59.967 55.000 0.00 0.00 31.75 3.61
159 160 0.315568 GAGTGACTGACTGACGCCTT 59.684 55.000 0.00 0.00 33.83 4.35
160 161 0.538516 AGAGTGACTGACTGACGCCT 60.539 55.000 0.00 0.00 33.83 5.52
161 162 1.960612 AGAGTGACTGACTGACGCC 59.039 57.895 0.00 0.00 33.83 5.68
192 193 3.793144 CTTTCTGGCCACGCTCGC 61.793 66.667 0.00 0.00 0.00 5.03
193 194 2.357517 ACTTTCTGGCCACGCTCG 60.358 61.111 0.00 0.00 0.00 5.03
194 195 2.383527 CGACTTTCTGGCCACGCTC 61.384 63.158 0.00 0.00 0.00 5.03
195 196 2.357517 CGACTTTCTGGCCACGCT 60.358 61.111 0.00 0.00 0.00 5.07
196 197 3.423154 CCGACTTTCTGGCCACGC 61.423 66.667 0.00 0.00 0.00 5.34
197 198 2.742372 CCCGACTTTCTGGCCACG 60.742 66.667 0.00 1.93 0.00 4.94
198 199 2.359975 CCCCGACTTTCTGGCCAC 60.360 66.667 0.00 0.00 0.00 5.01
199 200 2.528127 TCCCCGACTTTCTGGCCA 60.528 61.111 4.71 4.71 0.00 5.36
245 246 0.779997 AGCCTCAAAGTGAACCCCAT 59.220 50.000 0.00 0.00 0.00 4.00
247 248 0.609406 GGAGCCTCAAAGTGAACCCC 60.609 60.000 0.00 0.00 0.00 4.95
248 249 0.110486 TGGAGCCTCAAAGTGAACCC 59.890 55.000 0.00 0.00 0.00 4.11
254 255 1.682257 GCCTCTGGAGCCTCAAAGT 59.318 57.895 0.00 0.00 0.00 2.66
343 368 2.815647 GCCTGGAAAGCGTCTCCG 60.816 66.667 0.00 0.00 35.55 4.63
345 370 2.394563 GCAGCCTGGAAAGCGTCTC 61.395 63.158 0.00 0.00 34.64 3.36
346 371 2.359230 GCAGCCTGGAAAGCGTCT 60.359 61.111 0.00 0.00 34.64 4.18
375 400 2.523168 TCTCGTGCTGGTGGTGGA 60.523 61.111 0.00 0.00 0.00 4.02
376 401 2.047844 CTCTCGTGCTGGTGGTGG 60.048 66.667 0.00 0.00 0.00 4.61
378 403 4.008933 GGCTCTCGTGCTGGTGGT 62.009 66.667 0.00 0.00 0.00 4.16
379 404 4.767255 GGGCTCTCGTGCTGGTGG 62.767 72.222 0.00 0.00 0.00 4.61
483 527 0.250684 TTGCACCAGCTTGATTCGGA 60.251 50.000 0.00 0.00 42.74 4.55
485 529 1.469703 TGATTGCACCAGCTTGATTCG 59.530 47.619 0.00 0.00 42.74 3.34
490 534 1.443194 GCGTGATTGCACCAGCTTG 60.443 57.895 0.00 0.00 42.09 4.01
517 567 3.686241 GGTTTAGGGTTACGGTGATGAAC 59.314 47.826 0.00 0.00 0.00 3.18
571 635 1.290955 CGTCCGTGTTAGCAAGGGA 59.709 57.895 11.37 4.31 43.17 4.20
670 749 0.035458 GCTTGTGGAGTACAGCCAGT 59.965 55.000 7.64 0.00 41.10 4.00
671 750 0.674895 GGCTTGTGGAGTACAGCCAG 60.675 60.000 13.31 2.48 45.25 4.85
672 751 1.374947 GGCTTGTGGAGTACAGCCA 59.625 57.895 13.31 8.77 45.25 4.75
673 752 1.377333 GGGCTTGTGGAGTACAGCC 60.377 63.158 10.45 10.45 45.22 4.85
674 753 0.035056 ATGGGCTTGTGGAGTACAGC 60.035 55.000 0.00 0.00 41.10 4.40
689 768 4.082679 GCGAAGACAGTAGGATAGTATGGG 60.083 50.000 0.00 0.00 0.00 4.00
693 772 7.718314 TCTTAATGCGAAGACAGTAGGATAGTA 59.282 37.037 0.00 0.00 30.36 1.82
694 773 6.546403 TCTTAATGCGAAGACAGTAGGATAGT 59.454 38.462 0.00 0.00 30.36 2.12
695 774 6.971602 TCTTAATGCGAAGACAGTAGGATAG 58.028 40.000 0.00 0.00 30.36 2.08
721 800 1.342474 ACTCACTCGGATCAGTGGGAT 60.342 52.381 17.58 2.32 46.56 3.85
722 801 0.039764 ACTCACTCGGATCAGTGGGA 59.960 55.000 17.58 9.48 46.56 4.37
768 848 3.498840 CGTACGCACGTAGGAGTAC 57.501 57.895 15.65 9.07 43.31 2.73
790 870 1.336755 GACGAGATCTCTCTGGCTTCC 59.663 57.143 20.26 0.00 40.75 3.46
795 875 0.667993 GCCTGACGAGATCTCTCTGG 59.332 60.000 26.25 26.25 40.75 3.86
805 885 2.534298 CACTCATTACTGCCTGACGAG 58.466 52.381 0.00 0.00 0.00 4.18
824 907 1.060553 GACGAAATCGAAATCTGCGCA 59.939 47.619 10.98 10.98 43.02 6.09
848 931 2.751436 TTTGCATCTCGGGGCTGC 60.751 61.111 0.00 0.00 36.45 5.25
849 932 2.409870 GGTTTGCATCTCGGGGCTG 61.410 63.158 0.00 0.00 0.00 4.85
850 933 2.044946 GGTTTGCATCTCGGGGCT 60.045 61.111 0.00 0.00 0.00 5.19
867 958 1.526384 GCGTCTTAAAGCGCCTTTACG 60.526 52.381 2.29 9.98 46.93 3.18
909 1000 2.574999 GACGATCGTGCGTGCGTA 60.575 61.111 28.12 0.00 45.72 4.42
921 1012 4.189188 CCGTTCGCCCGAGACGAT 62.189 66.667 19.15 0.00 39.65 3.73
925 1016 3.515286 CTAGCCGTTCGCCCGAGA 61.515 66.667 0.00 0.00 38.78 4.04
953 1047 0.609151 TTTTATGGGCTCGTGGTCGA 59.391 50.000 0.00 0.00 44.12 4.20
986 1080 4.912395 TGGTGGTGGTTGCTGGCC 62.912 66.667 0.00 0.00 0.00 5.36
1064 1164 2.118294 GGGTTCTTGGCTTGGGCT 59.882 61.111 0.00 0.00 38.73 5.19
1065 1165 3.373565 CGGGTTCTTGGCTTGGGC 61.374 66.667 0.00 0.00 37.82 5.36
1066 1166 2.676471 CCGGGTTCTTGGCTTGGG 60.676 66.667 0.00 0.00 0.00 4.12
1107 1207 3.151022 GAGCAGGAGGACGGGGAG 61.151 72.222 0.00 0.00 0.00 4.30
1108 1208 4.779733 GGAGCAGGAGGACGGGGA 62.780 72.222 0.00 0.00 0.00 4.81
1486 1598 4.754667 GTCCTCACCGGCCCGTTC 62.755 72.222 0.00 0.00 0.00 3.95
1528 1640 3.179265 CTCGCCGTGGTACGCTTG 61.179 66.667 0.00 0.00 40.91 4.01
1537 1652 3.522731 CTCCTCCTCCTCGCCGTG 61.523 72.222 0.00 0.00 0.00 4.94
1543 1658 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
1544 1659 0.330431 ATCCTCCTCCTCCTCCTCCT 60.330 60.000 0.00 0.00 0.00 3.69
1545 1660 0.178935 CATCCTCCTCCTCCTCCTCC 60.179 65.000 0.00 0.00 0.00 4.30
1546 1661 0.856982 TCATCCTCCTCCTCCTCCTC 59.143 60.000 0.00 0.00 0.00 3.71
1547 1662 0.859760 CTCATCCTCCTCCTCCTCCT 59.140 60.000 0.00 0.00 0.00 3.69
1548 1663 0.178935 CCTCATCCTCCTCCTCCTCC 60.179 65.000 0.00 0.00 0.00 4.30
1549 1664 0.856982 TCCTCATCCTCCTCCTCCTC 59.143 60.000 0.00 0.00 0.00 3.71
1550 1665 1.220236 CTTCCTCATCCTCCTCCTCCT 59.780 57.143 0.00 0.00 0.00 3.69
1551 1666 1.062505 ACTTCCTCATCCTCCTCCTCC 60.063 57.143 0.00 0.00 0.00 4.30
1552 1667 2.038659 CACTTCCTCATCCTCCTCCTC 58.961 57.143 0.00 0.00 0.00 3.71
1553 1668 1.343884 CCACTTCCTCATCCTCCTCCT 60.344 57.143 0.00 0.00 0.00 3.69
1554 1669 1.127343 CCACTTCCTCATCCTCCTCC 58.873 60.000 0.00 0.00 0.00 4.30
1563 1678 0.191064 ACTCCACCTCCACTTCCTCA 59.809 55.000 0.00 0.00 0.00 3.86
1593 1708 4.393778 TCCACCTCCTCGTCCCCC 62.394 72.222 0.00 0.00 0.00 5.40
1594 1709 3.075641 GTCCACCTCCTCGTCCCC 61.076 72.222 0.00 0.00 0.00 4.81
1595 1710 3.450115 CGTCCACCTCCTCGTCCC 61.450 72.222 0.00 0.00 0.00 4.46
1617 1732 4.508128 TCGATGAACCGCTCCGCC 62.508 66.667 0.00 0.00 0.00 6.13
1741 1861 1.160137 AGCGACAATTCTGCCAAGAC 58.840 50.000 0.00 0.00 29.98 3.01
1748 1872 4.447054 CCAAGATAGCTAGCGACAATTCTG 59.553 45.833 9.55 1.00 0.00 3.02
1807 1931 0.861837 CAACACTGTGCGAGAGGAAC 59.138 55.000 7.90 0.00 0.00 3.62
1827 1951 7.753580 TGAACATGATACGTACTACTTGAACAG 59.246 37.037 0.00 0.00 0.00 3.16
1883 2007 4.302455 CACCACAACAAAGTCAACAACAA 58.698 39.130 0.00 0.00 0.00 2.83
1894 2018 3.378742 ACGTTTATCAGCACCACAACAAA 59.621 39.130 0.00 0.00 0.00 2.83
1898 2022 3.472652 AGAACGTTTATCAGCACCACAA 58.527 40.909 0.46 0.00 0.00 3.33
1906 2030 4.482386 TGAACTCGGAGAACGTTTATCAG 58.518 43.478 12.86 5.29 44.69 2.90
1914 2038 3.318017 ACAGATTTGAACTCGGAGAACG 58.682 45.455 12.86 0.00 46.11 3.95
1918 2042 7.017645 CACAAAATACAGATTTGAACTCGGAG 58.982 38.462 2.83 2.83 39.56 4.63
1940 2064 5.111989 GCATGACTGAAGAATAGTAGCACA 58.888 41.667 0.00 0.00 0.00 4.57
1947 2071 3.311871 GCACTGGCATGACTGAAGAATAG 59.688 47.826 13.07 0.00 40.72 1.73
1971 2102 1.658596 TCATGAATCTGTAACGCGTGC 59.341 47.619 14.98 10.13 0.00 5.34
1975 2106 3.426859 CGGAGATCATGAATCTGTAACGC 59.573 47.826 0.00 0.00 45.06 4.84
1977 2108 5.174035 CGAACGGAGATCATGAATCTGTAAC 59.826 44.000 20.28 16.64 45.06 2.50
1978 2109 5.067283 TCGAACGGAGATCATGAATCTGTAA 59.933 40.000 20.28 10.48 45.06 2.41
1979 2110 4.578928 TCGAACGGAGATCATGAATCTGTA 59.421 41.667 20.28 7.72 45.06 2.74
1990 2126 2.917971 CAACTGAACTCGAACGGAGATC 59.082 50.000 0.00 0.00 46.23 2.75
2086 2246 6.887376 GAGAAACGCTCTTATCACATTGTA 57.113 37.500 0.00 0.00 40.61 2.41
2188 2358 2.512057 GCAGAGCAGAGCAGAGCC 60.512 66.667 0.00 0.00 0.00 4.70
2260 2437 6.874134 ACTTGCTCGAGTTGTTGAAGTATAAT 59.126 34.615 15.13 0.00 0.00 1.28
2263 2440 4.632153 ACTTGCTCGAGTTGTTGAAGTAT 58.368 39.130 15.13 0.00 0.00 2.12
2269 2446 1.528586 CTGGACTTGCTCGAGTTGTTG 59.471 52.381 15.13 3.16 0.00 3.33
2294 2472 3.008157 TGGTGGAATTTTCAATGCTGCAT 59.992 39.130 9.81 9.81 0.00 3.96
2314 2492 3.136123 CCCACCTTGCGAGCATGG 61.136 66.667 23.14 23.14 44.08 3.66
2316 2494 2.270205 CTCCCACCTTGCGAGCAT 59.730 61.111 0.00 0.00 0.00 3.79
2317 2495 4.704833 GCTCCCACCTTGCGAGCA 62.705 66.667 7.75 0.00 46.63 4.26
2322 2500 2.032681 AACGAGCTCCCACCTTGC 59.967 61.111 8.47 0.00 0.00 4.01
2324 2502 1.371558 GTGAACGAGCTCCCACCTT 59.628 57.895 8.47 0.00 0.00 3.50
2325 2503 2.932234 CGTGAACGAGCTCCCACCT 61.932 63.158 8.47 0.00 43.02 4.00
2326 2504 2.432628 CGTGAACGAGCTCCCACC 60.433 66.667 8.47 0.00 43.02 4.61
2403 2582 2.555227 GGACCTTGCAAATCCCTCTGAA 60.555 50.000 15.66 0.00 0.00 3.02
2429 2608 5.468409 GCTTCCCTTTTGTGCTAGATCTATC 59.532 44.000 2.11 0.00 0.00 2.08
2431 2610 4.225042 TGCTTCCCTTTTGTGCTAGATCTA 59.775 41.667 1.69 1.69 0.00 1.98
2437 2616 2.949177 TCTGCTTCCCTTTTGTGCTA 57.051 45.000 0.00 0.00 0.00 3.49
2442 2621 4.861102 ACATCTTTCTGCTTCCCTTTTG 57.139 40.909 0.00 0.00 0.00 2.44
2446 2625 4.077822 CTCAAACATCTTTCTGCTTCCCT 58.922 43.478 0.00 0.00 0.00 4.20
2449 2628 3.486584 CGCTCAAACATCTTTCTGCTTC 58.513 45.455 0.00 0.00 0.00 3.86
2451 2630 1.198637 GCGCTCAAACATCTTTCTGCT 59.801 47.619 0.00 0.00 0.00 4.24
2452 2631 1.069022 TGCGCTCAAACATCTTTCTGC 60.069 47.619 9.73 0.00 0.00 4.26
2453 2632 2.975410 TGCGCTCAAACATCTTTCTG 57.025 45.000 9.73 0.00 0.00 3.02
2454 2633 3.076621 TCATGCGCTCAAACATCTTTCT 58.923 40.909 9.73 0.00 0.00 2.52
2469 2745 0.805711 TCTGGCACGTACATCATGCG 60.806 55.000 0.00 0.00 40.37 4.73
2471 2747 3.242837 CCAAATCTGGCACGTACATCATG 60.243 47.826 0.00 0.00 35.39 3.07
2472 2748 2.945008 CCAAATCTGGCACGTACATCAT 59.055 45.455 0.00 0.00 35.39 2.45
2495 2771 6.221858 GAGCTCCTCGAATGTTCAAATATC 57.778 41.667 0.87 0.00 0.00 1.63
2510 2786 2.440539 TTTTCTGTCACGAGCTCCTC 57.559 50.000 8.47 0.00 0.00 3.71
2511 2787 2.910688 TTTTTCTGTCACGAGCTCCT 57.089 45.000 8.47 0.00 0.00 3.69
2559 2838 5.048504 CAGGCATGAACTGTGAAGTATTGTT 60.049 40.000 0.00 0.00 0.00 2.83
2560 2839 4.456911 CAGGCATGAACTGTGAAGTATTGT 59.543 41.667 0.00 0.00 0.00 2.71
2562 2841 4.012374 CCAGGCATGAACTGTGAAGTATT 58.988 43.478 0.00 0.00 34.16 1.89
2563 2842 3.264193 TCCAGGCATGAACTGTGAAGTAT 59.736 43.478 0.00 0.00 34.16 2.12
2564 2843 2.637382 TCCAGGCATGAACTGTGAAGTA 59.363 45.455 0.00 0.00 34.16 2.24
2566 2845 2.189594 TCCAGGCATGAACTGTGAAG 57.810 50.000 0.00 2.64 34.16 3.02
2572 2851 3.446442 AGACAAATCCAGGCATGAACT 57.554 42.857 0.00 0.00 0.00 3.01
2598 2877 2.034879 CATTCCAAGAGCGCACGGT 61.035 57.895 11.47 0.00 0.00 4.83
2599 2878 2.753966 CCATTCCAAGAGCGCACGG 61.754 63.158 11.47 3.83 0.00 4.94
2600 2879 2.787249 CCATTCCAAGAGCGCACG 59.213 61.111 11.47 0.00 0.00 5.34
2601 2880 2.486966 GCCATTCCAAGAGCGCAC 59.513 61.111 11.47 2.25 0.00 5.34
2602 2881 2.751436 GGCCATTCCAAGAGCGCA 60.751 61.111 11.47 0.00 34.01 6.09
2603 2882 2.751436 TGGCCATTCCAAGAGCGC 60.751 61.111 0.00 0.00 43.21 5.92
2617 2896 3.314635 TGCAAAATTTGGTGATGTTTGGC 59.685 39.130 7.89 0.00 32.46 4.52
2624 2903 5.821470 TGATGTTTGTGCAAAATTTGGTGAT 59.179 32.000 7.89 0.00 31.33 3.06
2641 2920 0.667453 TGTGCATGTGCGTGATGTTT 59.333 45.000 0.00 0.00 45.83 2.83
2678 2959 9.834628 ACGCGATTAAAAATAGAAAAATTCTGA 57.165 25.926 15.93 0.00 40.94 3.27
2691 2972 6.081693 GGTGAACAGTAACGCGATTAAAAAT 58.918 36.000 15.93 0.00 0.00 1.82
2700 2981 1.897398 GCCTGGTGAACAGTAACGCG 61.897 60.000 3.53 3.53 46.06 6.01
2714 2995 0.742281 CCGTGTTCAGATGAGCCTGG 60.742 60.000 0.00 0.00 34.99 4.45
2716 2997 1.198713 ATCCGTGTTCAGATGAGCCT 58.801 50.000 0.00 0.00 0.00 4.58
2728 3009 8.868522 ATGAATATCCAATTTGATATCCGTGT 57.131 30.769 11.37 0.00 37.03 4.49
2731 3012 9.112725 TGCTATGAATATCCAATTTGATATCCG 57.887 33.333 11.37 2.60 37.03 4.18
2737 3018 8.980596 ACCTTTTGCTATGAATATCCAATTTGA 58.019 29.630 0.00 0.00 0.00 2.69
2799 3085 7.400627 TCTTTTCTTTTGGGGAAGAAGGTTAAA 59.599 33.333 1.03 0.00 44.05 1.52
2807 3094 4.832823 GTGGATCTTTTCTTTTGGGGAAGA 59.167 41.667 0.00 0.00 34.00 2.87
2811 3098 3.510459 AGGTGGATCTTTTCTTTTGGGG 58.490 45.455 0.00 0.00 0.00 4.96
2814 3101 8.146412 AGAAATCAAGGTGGATCTTTTCTTTTG 58.854 33.333 0.00 0.00 0.00 2.44
2881 3182 1.264749 TTGCCGGAGCTCCTGTGTAT 61.265 55.000 29.73 0.00 40.80 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.