Multiple sequence alignment - TraesCS3D01G042500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G042500 chr3D 100.000 4117 0 0 1 4117 16275067 16270951 0.000000e+00 7603.0
1 TraesCS3D01G042500 chr3D 94.638 690 33 4 3430 4117 591376002 591376689 0.000000e+00 1066.0
2 TraesCS3D01G042500 chr3D 93.687 697 39 4 3425 4117 335200726 335200031 0.000000e+00 1038.0
3 TraesCS3D01G042500 chr3D 93.084 694 45 3 3427 4117 47338869 47339562 0.000000e+00 1013.0
4 TraesCS3D01G042500 chr3D 94.118 85 3 2 1845 1928 31092856 31092939 1.200000e-25 128.0
5 TraesCS3D01G042500 chr3D 97.826 46 1 0 1249 1294 31092821 31092866 3.410000e-11 80.5
6 TraesCS3D01G042500 chr3B 93.182 2904 111 36 567 3439 23767559 23764712 0.000000e+00 4185.0
7 TraesCS3D01G042500 chr3B 84.756 164 7 5 2019 2182 809173160 809173305 9.220000e-32 148.0
8 TraesCS3D01G042500 chr3B 81.098 164 23 4 2810 2966 668892936 668893098 1.550000e-24 124.0
9 TraesCS3D01G042500 chr3A 92.476 2924 130 47 561 3433 20143119 20146003 0.000000e+00 4098.0
10 TraesCS3D01G042500 chr3A 94.167 120 5 2 415 534 20141183 20141300 9.090000e-42 182.0
11 TraesCS3D01G042500 chr3A 93.827 81 3 2 1845 1924 647803676 647803755 2.010000e-23 121.0
12 TraesCS3D01G042500 chr3A 100.000 36 0 0 1259 1294 647803651 647803686 2.660000e-07 67.6
13 TraesCS3D01G042500 chr4A 92.008 1464 101 7 1463 2915 643997853 643996395 0.000000e+00 2041.0
14 TraesCS3D01G042500 chr4A 92.771 83 6 0 1846 1928 602719353 602719435 2.010000e-23 121.0
15 TraesCS3D01G042500 chr4A 96.970 33 1 0 1460 1492 643996365 643996397 5.750000e-04 56.5
16 TraesCS3D01G042500 chr4D 94.477 688 34 3 3433 4117 446118647 446117961 0.000000e+00 1057.0
17 TraesCS3D01G042500 chr4D 91.457 398 23 7 2 388 80138691 80138294 1.680000e-148 536.0
18 TraesCS3D01G042500 chr4D 91.379 58 2 3 2715 2771 464156710 464156765 4.410000e-10 76.8
19 TraesCS3D01G042500 chr4D 94.000 50 1 2 2723 2771 443521053 443521101 1.590000e-09 75.0
20 TraesCS3D01G042500 chr2D 93.768 690 39 4 3431 4117 318417855 318417167 0.000000e+00 1033.0
21 TraesCS3D01G042500 chr2D 91.919 396 21 6 1 386 78076480 78076086 1.010000e-150 544.0
22 TraesCS3D01G042500 chr2D 97.973 148 3 0 2689 2836 519890341 519890194 1.470000e-64 257.0
23 TraesCS3D01G042500 chr2D 100.000 51 0 0 2530 2580 519890627 519890577 1.220000e-15 95.3
24 TraesCS3D01G042500 chr2D 96.970 33 1 0 1384 1416 506406098 506406066 5.750000e-04 56.5
25 TraesCS3D01G042500 chr6D 93.741 687 39 4 3431 4115 38882582 38881898 0.000000e+00 1027.0
26 TraesCS3D01G042500 chr6D 93.488 691 41 3 3431 4117 928126 927436 0.000000e+00 1024.0
27 TraesCS3D01G042500 chr6D 92.632 380 22 3 12 388 428661701 428661325 3.620000e-150 542.0
28 TraesCS3D01G042500 chr6D 91.436 397 23 6 1 386 45624463 45624859 6.060000e-148 534.0
29 TraesCS3D01G042500 chr6D 83.262 233 29 2 2041 2263 461702499 461702267 5.390000e-49 206.0
30 TraesCS3D01G042500 chr5D 93.459 688 41 4 3433 4117 256271016 256270330 0.000000e+00 1018.0
31 TraesCS3D01G042500 chr5D 91.538 390 27 4 3 386 212482742 212482353 2.180000e-147 532.0
32 TraesCS3D01G042500 chr5D 91.206 398 21 4 2 386 503736546 503736150 2.820000e-146 529.0
33 TraesCS3D01G042500 chr5D 100.000 148 0 0 2689 2836 373770032 373770179 1.460000e-69 274.0
34 TraesCS3D01G042500 chr5D 81.590 239 34 2 2035 2263 120792678 120792916 5.430000e-44 189.0
35 TraesCS3D01G042500 chr5D 90.541 148 0 1 2528 2675 373769533 373769666 2.530000e-42 183.0
36 TraesCS3D01G042500 chr5D 80.952 126 17 5 2811 2931 33022692 33022569 4.380000e-15 93.5
37 TraesCS3D01G042500 chr6A 93.033 689 47 1 3430 4117 301093920 301094608 0.000000e+00 1005.0
38 TraesCS3D01G042500 chr1B 92.765 387 26 2 1 386 601110898 601110513 3.590000e-155 558.0
39 TraesCS3D01G042500 chr1D 91.646 395 24 1 1 386 409814129 409814523 4.680000e-149 538.0
40 TraesCS3D01G042500 chr1D 84.922 451 31 13 1030 1478 471138099 471137684 4.920000e-114 422.0
41 TraesCS3D01G042500 chr1D 86.053 337 28 4 1846 2182 390266969 390267286 1.100000e-90 344.0
42 TraesCS3D01G042500 chr1D 100.000 70 0 0 2032 2101 471137522 471137453 3.340000e-26 130.0
43 TraesCS3D01G042500 chr1D 100.000 37 0 0 2033 2069 471137581 471137545 7.380000e-08 69.4
44 TraesCS3D01G042500 chr1D 95.238 42 1 1 2057 2097 471137692 471137651 9.550000e-07 65.8
45 TraesCS3D01G042500 chr7D 91.457 398 22 2 1 386 501382012 501382409 1.680000e-148 536.0
46 TraesCS3D01G042500 chr7B 84.047 257 22 6 1926 2182 667794169 667793932 3.200000e-56 230.0
47 TraesCS3D01G042500 chr6B 82.008 239 33 2 2035 2263 288647403 288647641 1.170000e-45 195.0
48 TraesCS3D01G042500 chr5A 79.000 200 28 7 1082 1267 491736979 491737178 1.550000e-24 124.0
49 TraesCS3D01G042500 chr5A 92.941 85 4 2 1845 1928 328711756 328711839 5.590000e-24 122.0
50 TraesCS3D01G042500 chr2A 93.827 81 3 2 1845 1924 211481745 211481666 2.010000e-23 121.0
51 TraesCS3D01G042500 chrUn 85.417 96 8 1 2174 2263 103107726 103107631 1.220000e-15 95.3
52 TraesCS3D01G042500 chr4B 92.593 54 2 2 2719 2771 579733600 579733652 4.410000e-10 76.8
53 TraesCS3D01G042500 chr4B 94.000 50 1 2 2723 2771 552846199 552846247 1.590000e-09 75.0
54 TraesCS3D01G042500 chr7A 88.333 60 7 0 2261 2320 200064847 200064788 5.710000e-09 73.1
55 TraesCS3D01G042500 chr7A 85.000 60 9 0 2261 2320 200032565 200032506 1.240000e-05 62.1
56 TraesCS3D01G042500 chr2B 100.000 36 0 0 1259 1294 153890101 153890066 2.660000e-07 67.6
57 TraesCS3D01G042500 chr1A 100.000 29 0 0 397 425 268914560 268914588 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G042500 chr3D 16270951 16275067 4116 True 7603.0 7603 100.0000 1 4117 1 chr3D.!!$R1 4116
1 TraesCS3D01G042500 chr3D 591376002 591376689 687 False 1066.0 1066 94.6380 3430 4117 1 chr3D.!!$F2 687
2 TraesCS3D01G042500 chr3D 335200031 335200726 695 True 1038.0 1038 93.6870 3425 4117 1 chr3D.!!$R2 692
3 TraesCS3D01G042500 chr3D 47338869 47339562 693 False 1013.0 1013 93.0840 3427 4117 1 chr3D.!!$F1 690
4 TraesCS3D01G042500 chr3B 23764712 23767559 2847 True 4185.0 4185 93.1820 567 3439 1 chr3B.!!$R1 2872
5 TraesCS3D01G042500 chr3A 20141183 20146003 4820 False 2140.0 4098 93.3215 415 3433 2 chr3A.!!$F1 3018
6 TraesCS3D01G042500 chr4A 643996395 643997853 1458 True 2041.0 2041 92.0080 1463 2915 1 chr4A.!!$R1 1452
7 TraesCS3D01G042500 chr4D 446117961 446118647 686 True 1057.0 1057 94.4770 3433 4117 1 chr4D.!!$R2 684
8 TraesCS3D01G042500 chr2D 318417167 318417855 688 True 1033.0 1033 93.7680 3431 4117 1 chr2D.!!$R2 686
9 TraesCS3D01G042500 chr6D 38881898 38882582 684 True 1027.0 1027 93.7410 3431 4115 1 chr6D.!!$R2 684
10 TraesCS3D01G042500 chr6D 927436 928126 690 True 1024.0 1024 93.4880 3431 4117 1 chr6D.!!$R1 686
11 TraesCS3D01G042500 chr5D 256270330 256271016 686 True 1018.0 1018 93.4590 3433 4117 1 chr5D.!!$R3 684
12 TraesCS3D01G042500 chr5D 373769533 373770179 646 False 228.5 274 95.2705 2528 2836 2 chr5D.!!$F2 308
13 TraesCS3D01G042500 chr6A 301093920 301094608 688 False 1005.0 1005 93.0330 3430 4117 1 chr6A.!!$F1 687

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
318 319 0.033405 TCCGTTTCACCCCAAACCAA 60.033 50.0 0.0 0.0 33.37 3.67 F
533 534 0.041238 CACTCCCTCCCACTAGGACA 59.959 60.0 0.0 0.0 40.93 4.02 F
541 542 0.109342 CCCACTAGGACATGATGCCC 59.891 60.0 0.0 0.0 38.24 5.36 F
851 2687 0.321671 CTGTTGAAAGCCGAGGAGGA 59.678 55.0 0.0 0.0 45.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1591 3450 0.745845 CTCCCCGCCAAGAGATTGTG 60.746 60.000 0.00 0.0 31.43 3.33 R
2330 4201 0.912486 AGAATTAAGCGGGGCAGAGT 59.088 50.000 0.00 0.0 0.00 3.24 R
2337 4208 1.308998 ATGGCGAAGAATTAAGCGGG 58.691 50.000 0.00 0.0 33.38 6.13 R
3131 5376 1.673923 GCCCCAAGTACTGTACCGAAC 60.674 57.143 14.05 0.0 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.530857 CGGCGGTCATGTCCCCTC 62.531 72.222 0.00 0.00 0.00 4.30
34 35 3.083997 GGCGGTCATGTCCCCTCT 61.084 66.667 3.24 0.00 0.00 3.69
35 36 2.187946 GCGGTCATGTCCCCTCTG 59.812 66.667 3.24 0.00 0.00 3.35
36 37 2.187946 CGGTCATGTCCCCTCTGC 59.812 66.667 3.24 0.00 0.00 4.26
37 38 2.592308 GGTCATGTCCCCTCTGCC 59.408 66.667 0.00 0.00 0.00 4.85
38 39 2.300967 GGTCATGTCCCCTCTGCCA 61.301 63.158 0.00 0.00 0.00 4.92
39 40 1.078143 GTCATGTCCCCTCTGCCAC 60.078 63.158 0.00 0.00 0.00 5.01
40 41 1.229625 TCATGTCCCCTCTGCCACT 60.230 57.895 0.00 0.00 0.00 4.00
41 42 1.077930 CATGTCCCCTCTGCCACTG 60.078 63.158 0.00 0.00 0.00 3.66
42 43 2.304056 ATGTCCCCTCTGCCACTGG 61.304 63.158 0.00 0.00 0.00 4.00
53 54 3.726517 CCACTGGCAAAGACGGCG 61.727 66.667 4.80 4.80 0.00 6.46
54 55 2.664851 CACTGGCAAAGACGGCGA 60.665 61.111 16.62 0.00 0.00 5.54
55 56 2.665185 ACTGGCAAAGACGGCGAC 60.665 61.111 16.62 7.87 0.00 5.19
68 69 4.699522 GCGACGGCCAAACCTCCT 62.700 66.667 2.24 0.00 35.61 3.69
69 70 2.434359 CGACGGCCAAACCTCCTC 60.434 66.667 2.24 0.00 35.61 3.71
70 71 2.046217 GACGGCCAAACCTCCTCC 60.046 66.667 2.24 0.00 35.61 4.30
71 72 3.952628 GACGGCCAAACCTCCTCCG 62.953 68.421 2.24 0.00 45.04 4.63
72 73 3.702048 CGGCCAAACCTCCTCCGA 61.702 66.667 2.24 0.00 42.43 4.55
73 74 2.998949 GGCCAAACCTCCTCCGAT 59.001 61.111 0.00 0.00 34.51 4.18
74 75 1.153147 GGCCAAACCTCCTCCGATC 60.153 63.158 0.00 0.00 34.51 3.69
75 76 1.521681 GCCAAACCTCCTCCGATCG 60.522 63.158 8.51 8.51 0.00 3.69
76 77 1.956629 GCCAAACCTCCTCCGATCGA 61.957 60.000 18.66 1.60 0.00 3.59
77 78 0.179108 CCAAACCTCCTCCGATCGAC 60.179 60.000 18.66 0.00 0.00 4.20
78 79 0.525668 CAAACCTCCTCCGATCGACG 60.526 60.000 18.66 6.66 42.18 5.12
87 88 3.870606 CGATCGACGGCCAAAACT 58.129 55.556 10.26 0.00 38.46 2.66
88 89 3.038946 CGATCGACGGCCAAAACTA 57.961 52.632 10.26 0.00 38.46 2.24
89 90 0.643820 CGATCGACGGCCAAAACTAC 59.356 55.000 10.26 0.00 38.46 2.73
90 91 0.643820 GATCGACGGCCAAAACTACG 59.356 55.000 2.24 0.00 0.00 3.51
91 92 0.244450 ATCGACGGCCAAAACTACGA 59.756 50.000 2.24 2.96 0.00 3.43
92 93 0.664166 TCGACGGCCAAAACTACGAC 60.664 55.000 2.24 0.00 0.00 4.34
93 94 1.620413 CGACGGCCAAAACTACGACC 61.620 60.000 2.24 0.00 0.00 4.79
94 95 0.600782 GACGGCCAAAACTACGACCA 60.601 55.000 2.24 0.00 0.00 4.02
95 96 0.179051 ACGGCCAAAACTACGACCAA 60.179 50.000 2.24 0.00 0.00 3.67
96 97 0.945813 CGGCCAAAACTACGACCAAA 59.054 50.000 2.24 0.00 0.00 3.28
97 98 1.069500 CGGCCAAAACTACGACCAAAG 60.069 52.381 2.24 0.00 0.00 2.77
98 99 1.335597 GGCCAAAACTACGACCAAAGC 60.336 52.381 0.00 0.00 0.00 3.51
99 100 1.662026 GCCAAAACTACGACCAAAGCG 60.662 52.381 0.00 0.00 0.00 4.68
100 101 1.662026 CCAAAACTACGACCAAAGCGC 60.662 52.381 0.00 0.00 0.00 5.92
101 102 0.233848 AAAACTACGACCAAAGCGCG 59.766 50.000 0.00 0.00 0.00 6.86
102 103 1.562575 AAACTACGACCAAAGCGCGG 61.563 55.000 8.83 0.00 0.00 6.46
103 104 3.186047 CTACGACCAAAGCGCGGG 61.186 66.667 8.83 13.20 0.00 6.13
125 126 4.451150 GTGGCGGCCATGTCGAGA 62.451 66.667 26.68 0.00 35.28 4.04
126 127 4.451150 TGGCGGCCATGTCGAGAC 62.451 66.667 19.77 0.00 29.41 3.36
128 129 4.796231 GCGGCCATGTCGAGACGT 62.796 66.667 2.24 0.00 29.41 4.34
129 130 2.880879 CGGCCATGTCGAGACGTG 60.881 66.667 16.25 16.25 45.43 4.49
135 136 0.790207 CATGTCGAGACGTGGTTTGG 59.210 55.000 15.59 0.00 42.91 3.28
136 137 0.391597 ATGTCGAGACGTGGTTTGGT 59.608 50.000 0.00 0.00 0.00 3.67
137 138 1.031235 TGTCGAGACGTGGTTTGGTA 58.969 50.000 0.00 0.00 0.00 3.25
138 139 1.614903 TGTCGAGACGTGGTTTGGTAT 59.385 47.619 0.00 0.00 0.00 2.73
139 140 1.990563 GTCGAGACGTGGTTTGGTATG 59.009 52.381 0.00 0.00 0.00 2.39
140 141 1.067425 TCGAGACGTGGTTTGGTATGG 60.067 52.381 0.00 0.00 0.00 2.74
141 142 1.067425 CGAGACGTGGTTTGGTATGGA 60.067 52.381 0.00 0.00 0.00 3.41
142 143 2.344025 GAGACGTGGTTTGGTATGGAC 58.656 52.381 0.00 0.00 0.00 4.02
143 144 1.073177 GACGTGGTTTGGTATGGACG 58.927 55.000 0.00 0.00 0.00 4.79
144 145 0.320946 ACGTGGTTTGGTATGGACGG 60.321 55.000 0.00 0.00 0.00 4.79
145 146 1.641123 CGTGGTTTGGTATGGACGGC 61.641 60.000 0.00 0.00 0.00 5.68
146 147 1.001887 TGGTTTGGTATGGACGGCC 60.002 57.895 0.00 0.00 0.00 6.13
147 148 2.110352 GGTTTGGTATGGACGGCCG 61.110 63.158 26.86 26.86 36.79 6.13
148 149 2.110352 GTTTGGTATGGACGGCCGG 61.110 63.158 31.76 11.88 36.79 6.13
149 150 3.332445 TTTGGTATGGACGGCCGGG 62.332 63.158 31.76 2.28 36.79 5.73
172 173 4.803426 CGCTGTGAGGAGGCGTCC 62.803 72.222 17.88 17.88 43.28 4.79
180 181 3.851955 GGAGGCGTCCGGAGAATA 58.148 61.111 3.06 0.00 31.37 1.75
181 182 1.660917 GGAGGCGTCCGGAGAATAG 59.339 63.158 3.06 0.00 31.37 1.73
182 183 1.007154 GAGGCGTCCGGAGAATAGC 60.007 63.158 3.06 5.78 0.00 2.97
183 184 2.354773 GGCGTCCGGAGAATAGCG 60.355 66.667 3.06 4.65 0.00 4.26
184 185 2.354773 GCGTCCGGAGAATAGCGG 60.355 66.667 3.06 0.00 0.00 5.52
185 186 3.117372 CGTCCGGAGAATAGCGGT 58.883 61.111 3.06 0.00 0.00 5.68
186 187 1.299165 CGTCCGGAGAATAGCGGTG 60.299 63.158 3.06 0.00 0.00 4.94
187 188 1.067582 GTCCGGAGAATAGCGGTGG 59.932 63.158 3.06 0.00 0.00 4.61
188 189 2.280186 CCGGAGAATAGCGGTGGC 60.280 66.667 0.00 0.00 40.37 5.01
189 190 2.658593 CGGAGAATAGCGGTGGCG 60.659 66.667 0.00 0.00 46.35 5.69
190 191 2.280186 GGAGAATAGCGGTGGCGG 60.280 66.667 0.00 0.00 46.35 6.13
191 192 2.280186 GAGAATAGCGGTGGCGGG 60.280 66.667 0.00 0.00 46.35 6.13
192 193 3.809374 GAGAATAGCGGTGGCGGGG 62.809 68.421 0.00 0.00 46.35 5.73
212 213 3.775654 GGGCGGGGAGAGAGTGTG 61.776 72.222 0.00 0.00 0.00 3.82
213 214 3.775654 GGCGGGGAGAGAGTGTGG 61.776 72.222 0.00 0.00 0.00 4.17
214 215 2.680352 GCGGGGAGAGAGTGTGGA 60.680 66.667 0.00 0.00 0.00 4.02
215 216 2.283529 GCGGGGAGAGAGTGTGGAA 61.284 63.158 0.00 0.00 0.00 3.53
216 217 1.893786 CGGGGAGAGAGTGTGGAAG 59.106 63.158 0.00 0.00 0.00 3.46
217 218 1.599576 GGGGAGAGAGTGTGGAAGC 59.400 63.158 0.00 0.00 0.00 3.86
218 219 1.216710 GGGAGAGAGTGTGGAAGCG 59.783 63.158 0.00 0.00 0.00 4.68
219 220 1.536943 GGGAGAGAGTGTGGAAGCGT 61.537 60.000 0.00 0.00 0.00 5.07
220 221 0.318762 GGAGAGAGTGTGGAAGCGTT 59.681 55.000 0.00 0.00 0.00 4.84
221 222 1.423395 GAGAGAGTGTGGAAGCGTTG 58.577 55.000 0.00 0.00 0.00 4.10
222 223 0.034059 AGAGAGTGTGGAAGCGTTGG 59.966 55.000 0.00 0.00 0.00 3.77
223 224 0.951040 GAGAGTGTGGAAGCGTTGGG 60.951 60.000 0.00 0.00 0.00 4.12
224 225 1.070786 GAGTGTGGAAGCGTTGGGA 59.929 57.895 0.00 0.00 0.00 4.37
225 226 0.951040 GAGTGTGGAAGCGTTGGGAG 60.951 60.000 0.00 0.00 0.00 4.30
226 227 2.281484 TGTGGAAGCGTTGGGAGC 60.281 61.111 0.00 0.00 0.00 4.70
227 228 3.423154 GTGGAAGCGTTGGGAGCG 61.423 66.667 0.00 0.00 40.04 5.03
228 229 4.697756 TGGAAGCGTTGGGAGCGG 62.698 66.667 0.00 0.00 40.04 5.52
229 230 4.388499 GGAAGCGTTGGGAGCGGA 62.388 66.667 0.00 0.00 40.04 5.54
230 231 2.815647 GAAGCGTTGGGAGCGGAG 60.816 66.667 0.00 0.00 40.04 4.63
231 232 4.394712 AAGCGTTGGGAGCGGAGG 62.395 66.667 0.00 0.00 40.04 4.30
234 235 4.452733 CGTTGGGAGCGGAGGGAC 62.453 72.222 0.00 0.00 0.00 4.46
236 237 3.003173 TTGGGAGCGGAGGGACTG 61.003 66.667 0.00 0.00 41.55 3.51
248 249 2.893398 GGACTGCTAGTGTCCCCG 59.107 66.667 19.74 0.00 46.01 5.73
249 250 1.681327 GGACTGCTAGTGTCCCCGA 60.681 63.158 19.74 0.00 46.01 5.14
250 251 1.511768 GACTGCTAGTGTCCCCGAC 59.488 63.158 6.72 0.00 0.00 4.79
251 252 1.228769 ACTGCTAGTGTCCCCGACA 60.229 57.895 0.00 0.00 40.50 4.35
252 253 1.251527 ACTGCTAGTGTCCCCGACAG 61.252 60.000 0.00 0.00 43.57 3.51
253 254 1.949847 CTGCTAGTGTCCCCGACAGG 61.950 65.000 0.00 0.00 43.57 4.00
254 255 2.893398 CTAGTGTCCCCGACAGGC 59.107 66.667 0.00 0.00 43.57 4.85
255 256 3.064987 CTAGTGTCCCCGACAGGCG 62.065 68.421 0.00 0.00 43.57 5.52
270 271 3.998672 GCGGGTCACGGGAGACAA 61.999 66.667 0.00 0.00 44.51 3.18
271 272 2.261671 CGGGTCACGGGAGACAAG 59.738 66.667 0.00 0.00 40.29 3.16
272 273 2.663196 GGGTCACGGGAGACAAGG 59.337 66.667 0.00 0.00 40.29 3.61
273 274 2.663196 GGTCACGGGAGACAAGGG 59.337 66.667 0.00 0.00 40.29 3.95
274 275 2.047179 GTCACGGGAGACAAGGGC 60.047 66.667 0.00 0.00 38.40 5.19
275 276 3.691342 TCACGGGAGACAAGGGCG 61.691 66.667 0.00 0.00 0.00 6.13
276 277 4.003788 CACGGGAGACAAGGGCGT 62.004 66.667 0.00 0.00 0.00 5.68
277 278 4.003788 ACGGGAGACAAGGGCGTG 62.004 66.667 0.00 0.00 0.00 5.34
280 281 4.681978 GGAGACAAGGGCGTGCGT 62.682 66.667 0.00 0.00 0.00 5.24
281 282 3.112709 GAGACAAGGGCGTGCGTC 61.113 66.667 2.70 2.70 0.00 5.19
312 313 4.973055 CGCGTCCGTTTCACCCCA 62.973 66.667 0.00 0.00 0.00 4.96
313 314 2.592287 GCGTCCGTTTCACCCCAA 60.592 61.111 0.00 0.00 0.00 4.12
314 315 2.188161 GCGTCCGTTTCACCCCAAA 61.188 57.895 0.00 0.00 0.00 3.28
315 316 1.650363 CGTCCGTTTCACCCCAAAC 59.350 57.895 0.00 0.00 33.57 2.93
316 317 1.788067 CGTCCGTTTCACCCCAAACC 61.788 60.000 0.00 0.00 33.37 3.27
317 318 0.752376 GTCCGTTTCACCCCAAACCA 60.752 55.000 0.00 0.00 33.37 3.67
318 319 0.033405 TCCGTTTCACCCCAAACCAA 60.033 50.000 0.00 0.00 33.37 3.67
319 320 0.387565 CCGTTTCACCCCAAACCAAG 59.612 55.000 0.00 0.00 33.37 3.61
320 321 0.249280 CGTTTCACCCCAAACCAAGC 60.249 55.000 0.00 0.00 33.37 4.01
321 322 0.827368 GTTTCACCCCAAACCAAGCA 59.173 50.000 0.00 0.00 31.10 3.91
322 323 0.827368 TTTCACCCCAAACCAAGCAC 59.173 50.000 0.00 0.00 0.00 4.40
323 324 0.324738 TTCACCCCAAACCAAGCACA 60.325 50.000 0.00 0.00 0.00 4.57
324 325 0.324738 TCACCCCAAACCAAGCACAA 60.325 50.000 0.00 0.00 0.00 3.33
325 326 0.104671 CACCCCAAACCAAGCACAAG 59.895 55.000 0.00 0.00 0.00 3.16
326 327 0.325203 ACCCCAAACCAAGCACAAGT 60.325 50.000 0.00 0.00 0.00 3.16
327 328 0.829990 CCCCAAACCAAGCACAAGTT 59.170 50.000 0.00 0.00 0.00 2.66
328 329 1.209261 CCCCAAACCAAGCACAAGTTT 59.791 47.619 0.00 0.00 34.13 2.66
329 330 2.278854 CCCAAACCAAGCACAAGTTTG 58.721 47.619 12.17 12.17 46.28 2.93
333 334 2.959507 ACCAAGCACAAGTTTGAACC 57.040 45.000 0.00 0.00 38.10 3.62
334 335 1.134175 ACCAAGCACAAGTTTGAACCG 59.866 47.619 0.00 0.00 38.10 4.44
335 336 1.535860 CCAAGCACAAGTTTGAACCGG 60.536 52.381 0.00 0.00 38.10 5.28
336 337 0.744281 AAGCACAAGTTTGAACCGGG 59.256 50.000 6.32 0.00 0.00 5.73
337 338 1.106944 AGCACAAGTTTGAACCGGGG 61.107 55.000 6.32 0.00 0.00 5.73
338 339 1.104577 GCACAAGTTTGAACCGGGGA 61.105 55.000 6.32 0.00 0.00 4.81
339 340 0.666374 CACAAGTTTGAACCGGGGAC 59.334 55.000 6.32 0.00 0.00 4.46
351 352 3.347168 GGGGACGGGTCAAAAACG 58.653 61.111 0.75 0.00 0.00 3.60
352 353 2.263021 GGGGACGGGTCAAAAACGG 61.263 63.158 0.75 0.00 0.00 4.44
353 354 1.227913 GGGACGGGTCAAAAACGGA 60.228 57.895 0.75 0.00 0.00 4.69
354 355 1.509644 GGGACGGGTCAAAAACGGAC 61.510 60.000 0.75 0.00 34.52 4.79
355 356 1.566077 GACGGGTCAAAAACGGACG 59.434 57.895 0.00 0.00 36.12 4.79
356 357 0.875474 GACGGGTCAAAAACGGACGA 60.875 55.000 0.00 0.00 36.12 4.20
357 358 0.461693 ACGGGTCAAAAACGGACGAA 60.462 50.000 0.00 0.00 36.12 3.85
358 359 0.656785 CGGGTCAAAAACGGACGAAA 59.343 50.000 0.00 0.00 36.12 3.46
359 360 1.264826 CGGGTCAAAAACGGACGAAAT 59.735 47.619 0.00 0.00 36.12 2.17
360 361 2.663606 CGGGTCAAAAACGGACGAAATC 60.664 50.000 0.00 0.00 36.12 2.17
361 362 2.351060 GGGTCAAAAACGGACGAAATCC 60.351 50.000 0.00 0.00 45.20 3.01
370 371 2.825086 GGACGAAATCCGGACATTTG 57.175 50.000 6.12 11.94 43.93 2.32
371 372 2.081462 GGACGAAATCCGGACATTTGT 58.919 47.619 19.73 19.73 43.93 2.83
372 373 2.095372 GGACGAAATCCGGACATTTGTC 59.905 50.000 28.56 28.56 43.93 3.18
382 383 2.331809 GACATTTGTCCGTTTGAGGC 57.668 50.000 0.00 0.00 39.07 4.70
383 384 0.958822 ACATTTGTCCGTTTGAGGCC 59.041 50.000 0.00 0.00 0.00 5.19
384 385 0.109781 CATTTGTCCGTTTGAGGCCG 60.110 55.000 0.00 0.00 0.00 6.13
385 386 1.862602 ATTTGTCCGTTTGAGGCCGC 61.863 55.000 0.00 0.00 0.00 6.53
386 387 3.758973 TTGTCCGTTTGAGGCCGCA 62.759 57.895 4.49 4.49 0.00 5.69
387 388 3.723348 GTCCGTTTGAGGCCGCAC 61.723 66.667 9.41 0.00 0.00 5.34
397 398 3.365535 GGCCGCACCTGAACAAAT 58.634 55.556 0.00 0.00 34.51 2.32
398 399 2.562125 GGCCGCACCTGAACAAATA 58.438 52.632 0.00 0.00 34.51 1.40
399 400 0.451783 GGCCGCACCTGAACAAATAG 59.548 55.000 0.00 0.00 34.51 1.73
400 401 0.451783 GCCGCACCTGAACAAATAGG 59.548 55.000 0.00 0.00 40.01 2.57
401 402 1.094785 CCGCACCTGAACAAATAGGG 58.905 55.000 0.00 0.00 38.42 3.53
402 403 1.613255 CCGCACCTGAACAAATAGGGT 60.613 52.381 0.00 0.00 38.42 4.34
403 404 1.737793 CGCACCTGAACAAATAGGGTC 59.262 52.381 0.00 0.00 38.42 4.46
404 405 1.737793 GCACCTGAACAAATAGGGTCG 59.262 52.381 0.00 0.00 38.42 4.79
405 406 1.737793 CACCTGAACAAATAGGGTCGC 59.262 52.381 0.00 0.00 38.42 5.19
406 407 1.006832 CCTGAACAAATAGGGTCGCG 58.993 55.000 0.00 0.00 0.00 5.87
407 408 0.373716 CTGAACAAATAGGGTCGCGC 59.626 55.000 0.00 0.00 0.00 6.86
408 409 1.347221 GAACAAATAGGGTCGCGCG 59.653 57.895 26.76 26.76 0.00 6.86
409 410 2.032185 GAACAAATAGGGTCGCGCGG 62.032 60.000 31.69 12.86 0.00 6.46
410 411 2.510691 CAAATAGGGTCGCGCGGT 60.511 61.111 31.69 14.72 0.00 5.68
411 412 2.510691 AAATAGGGTCGCGCGGTG 60.511 61.111 31.69 1.17 0.00 4.94
412 413 4.524318 AATAGGGTCGCGCGGTGG 62.524 66.667 31.69 0.71 0.00 4.61
462 463 1.439353 CGCATTTCCCACATCCCGAG 61.439 60.000 0.00 0.00 0.00 4.63
489 490 2.612493 TAAAGGGAGGGCAGGCACC 61.612 63.158 0.00 0.00 0.00 5.01
529 530 3.383698 TTACTCACTCCCTCCCACTAG 57.616 52.381 0.00 0.00 0.00 2.57
531 532 0.631753 CTCACTCCCTCCCACTAGGA 59.368 60.000 0.00 0.00 44.91 2.94
532 533 0.335361 TCACTCCCTCCCACTAGGAC 59.665 60.000 0.00 0.00 40.93 3.85
533 534 0.041238 CACTCCCTCCCACTAGGACA 59.959 60.000 0.00 0.00 40.93 4.02
534 535 1.019650 ACTCCCTCCCACTAGGACAT 58.980 55.000 0.00 0.00 40.93 3.06
535 536 1.343478 ACTCCCTCCCACTAGGACATG 60.343 57.143 0.00 0.00 40.93 3.21
536 537 1.015609 TCCCTCCCACTAGGACATGA 58.984 55.000 0.00 0.00 40.93 3.07
537 538 1.580658 TCCCTCCCACTAGGACATGAT 59.419 52.381 0.00 0.00 40.93 2.45
538 539 1.696336 CCCTCCCACTAGGACATGATG 59.304 57.143 0.00 0.00 40.93 3.07
539 540 1.071385 CCTCCCACTAGGACATGATGC 59.929 57.143 0.00 0.00 40.93 3.91
540 541 1.071385 CTCCCACTAGGACATGATGCC 59.929 57.143 0.00 0.00 40.93 4.40
541 542 0.109342 CCCACTAGGACATGATGCCC 59.891 60.000 0.00 0.00 38.24 5.36
542 543 0.839277 CCACTAGGACATGATGCCCA 59.161 55.000 0.00 0.00 36.89 5.36
543 544 1.212688 CCACTAGGACATGATGCCCAA 59.787 52.381 0.00 0.00 36.89 4.12
551 552 3.524541 GACATGATGCCCAAACAATTCC 58.475 45.455 0.00 0.00 0.00 3.01
553 554 1.274712 TGATGCCCAAACAATTCCCC 58.725 50.000 0.00 0.00 0.00 4.81
635 2447 2.663852 CAACGACCACACCGTCCC 60.664 66.667 0.00 0.00 39.57 4.46
664 2476 4.029186 CACGGACGAACGGACGGA 62.029 66.667 14.41 0.00 38.39 4.69
665 2477 4.030452 ACGGACGAACGGACGGAC 62.030 66.667 14.41 2.58 38.39 4.79
746 2568 4.694233 ACGAGCCCAGCAGTGCAG 62.694 66.667 19.20 9.58 0.00 4.41
747 2569 4.694233 CGAGCCCAGCAGTGCAGT 62.694 66.667 19.20 0.00 0.00 4.40
748 2570 3.054503 GAGCCCAGCAGTGCAGTG 61.055 66.667 19.20 17.56 0.00 3.66
843 2679 1.666023 GCGGTAAAGCTGTTGAAAGCC 60.666 52.381 0.00 0.00 44.68 4.35
850 2686 1.301677 GCTGTTGAAAGCCGAGGAGG 61.302 60.000 0.00 0.00 44.97 4.30
851 2687 0.321671 CTGTTGAAAGCCGAGGAGGA 59.678 55.000 0.00 0.00 45.00 3.71
852 2688 0.321671 TGTTGAAAGCCGAGGAGGAG 59.678 55.000 0.00 0.00 45.00 3.69
853 2689 0.321996 GTTGAAAGCCGAGGAGGAGT 59.678 55.000 0.00 0.00 45.00 3.85
854 2690 0.321671 TTGAAAGCCGAGGAGGAGTG 59.678 55.000 0.00 0.00 45.00 3.51
877 2713 0.960861 CGGAGGTGGAGAAAAAGGCC 60.961 60.000 0.00 0.00 0.00 5.19
881 2717 1.977009 GTGGAGAAAAAGGCCCGGG 60.977 63.158 19.09 19.09 0.00 5.73
882 2718 3.068691 GGAGAAAAAGGCCCGGGC 61.069 66.667 38.57 38.57 41.06 6.13
883 2719 2.282887 GAGAAAAAGGCCCGGGCA 60.283 61.111 44.46 0.00 44.11 5.36
884 2720 2.283173 AGAAAAAGGCCCGGGCAG 60.283 61.111 44.46 10.24 44.11 4.85
885 2721 2.282887 GAAAAAGGCCCGGGCAGA 60.283 61.111 44.46 0.00 44.11 4.26
886 2722 2.283173 AAAAAGGCCCGGGCAGAG 60.283 61.111 44.46 9.36 44.11 3.35
897 2733 4.828925 GGCAGAGGGCGACAGAGC 62.829 72.222 0.00 0.00 46.16 4.09
899 2735 3.753434 CAGAGGGCGACAGAGCGT 61.753 66.667 0.00 0.00 38.18 5.07
912 2755 2.101582 ACAGAGCGTGACAAGAAGAACT 59.898 45.455 0.00 0.00 0.00 3.01
917 2764 1.344763 CGTGACAAGAAGAACTCCCCT 59.655 52.381 0.00 0.00 0.00 4.79
918 2765 2.610727 CGTGACAAGAAGAACTCCCCTC 60.611 54.545 0.00 0.00 0.00 4.30
953 2800 1.303155 GCCTTGCCACTTCTGCTCT 60.303 57.895 0.00 0.00 0.00 4.09
954 2801 1.584380 GCCTTGCCACTTCTGCTCTG 61.584 60.000 0.00 0.00 0.00 3.35
992 2839 2.603473 CAGTCCACCTCCACCGGA 60.603 66.667 9.46 0.00 0.00 5.14
1004 2854 2.676471 ACCGGACAAAGCCATGCC 60.676 61.111 9.46 0.00 0.00 4.40
1591 3450 0.741221 GCAGGATCTCAACGTGTCCC 60.741 60.000 0.00 0.00 0.00 4.46
1603 3462 1.270839 ACGTGTCCCACAATCTCTTGG 60.271 52.381 0.00 0.00 36.64 3.61
2230 4101 3.897122 GCCTCCACCACCCCAACA 61.897 66.667 0.00 0.00 0.00 3.33
2294 4165 3.598678 TCGTCTACGAGTTCATGCG 57.401 52.632 0.14 0.00 44.22 4.73
2329 4200 4.785453 CCCTCCTCCACGGCAAGC 62.785 72.222 0.00 0.00 0.00 4.01
2330 4201 4.020617 CCTCCTCCACGGCAAGCA 62.021 66.667 0.00 0.00 0.00 3.91
2337 4208 3.730761 CACGGCAAGCACTCTGCC 61.731 66.667 3.69 3.69 46.52 4.85
2406 4290 4.344679 TGTTGCTGAATTGAAGGTGGAAAT 59.655 37.500 0.00 0.00 0.00 2.17
2409 4293 4.240096 GCTGAATTGAAGGTGGAAATGTG 58.760 43.478 0.00 0.00 0.00 3.21
2933 5169 3.411114 GATGCTGCAGCTGGCCCTA 62.411 63.158 36.61 17.39 43.89 3.53
3131 5376 2.538437 CAGTGATCGGAGAGAGCTTTG 58.462 52.381 0.00 0.00 43.63 2.77
3134 5379 2.926838 GTGATCGGAGAGAGCTTTGTTC 59.073 50.000 0.00 0.00 43.63 3.18
3140 5388 2.029290 GGAGAGAGCTTTGTTCGGTACA 60.029 50.000 0.00 0.00 34.12 2.90
3141 5389 3.246619 GAGAGAGCTTTGTTCGGTACAG 58.753 50.000 0.00 0.00 38.19 2.74
3142 5390 2.628657 AGAGAGCTTTGTTCGGTACAGT 59.371 45.455 0.00 0.00 38.19 3.55
3143 5391 3.825014 AGAGAGCTTTGTTCGGTACAGTA 59.175 43.478 0.00 0.00 38.19 2.74
3144 5392 3.910648 AGAGCTTTGTTCGGTACAGTAC 58.089 45.455 1.59 1.59 38.19 2.73
3145 5393 3.573110 AGAGCTTTGTTCGGTACAGTACT 59.427 43.478 10.62 0.00 38.19 2.73
3146 5394 4.038883 AGAGCTTTGTTCGGTACAGTACTT 59.961 41.667 10.62 0.00 38.19 2.24
3147 5395 4.056050 AGCTTTGTTCGGTACAGTACTTG 58.944 43.478 10.62 4.20 38.19 3.16
3148 5396 3.185797 GCTTTGTTCGGTACAGTACTTGG 59.814 47.826 10.62 1.33 38.19 3.61
3149 5397 3.389925 TTGTTCGGTACAGTACTTGGG 57.610 47.619 10.62 0.00 38.19 4.12
3150 5398 1.619827 TGTTCGGTACAGTACTTGGGG 59.380 52.381 10.62 0.00 31.68 4.96
3151 5399 0.609662 TTCGGTACAGTACTTGGGGC 59.390 55.000 10.62 0.00 0.00 5.80
3152 5400 0.251922 TCGGTACAGTACTTGGGGCT 60.252 55.000 10.62 0.00 0.00 5.19
3161 5409 3.441572 CAGTACTTGGGGCTTTGATTGAG 59.558 47.826 0.00 0.00 0.00 3.02
3162 5410 2.683211 ACTTGGGGCTTTGATTGAGT 57.317 45.000 0.00 0.00 0.00 3.41
3210 5458 0.395312 TTTGTCTTCGTCTGGGGGAC 59.605 55.000 0.00 0.00 41.28 4.46
3230 5478 0.250553 GATTGGTGTGGTCCGTTGGA 60.251 55.000 0.00 0.00 0.00 3.53
3231 5479 0.404040 ATTGGTGTGGTCCGTTGGAT 59.596 50.000 0.00 0.00 32.73 3.41
3232 5480 0.250553 TTGGTGTGGTCCGTTGGATC 60.251 55.000 0.00 0.00 32.73 3.36
3233 5481 1.125093 TGGTGTGGTCCGTTGGATCT 61.125 55.000 0.00 0.00 33.22 2.75
3234 5482 0.036306 GGTGTGGTCCGTTGGATCTT 59.964 55.000 0.00 0.00 33.22 2.40
3245 5493 4.281941 TCCGTTGGATCTTATCTGATCTGG 59.718 45.833 0.00 0.00 41.72 3.86
3302 5550 4.523173 TGATTAGAATAGCCGTACTGGGAG 59.477 45.833 6.00 0.00 38.63 4.30
3351 5599 4.297510 TGATCATGGCGTTTGTCTTTTTG 58.702 39.130 0.00 0.00 0.00 2.44
3405 5653 2.435372 ACACTGGCTTTCAACTTGGA 57.565 45.000 0.00 0.00 0.00 3.53
3448 5696 4.478206 CTCTTAGAGCAACTCCAATGGA 57.522 45.455 0.48 0.48 0.00 3.41
3565 5813 1.227102 CCTGCCAATCCATTCCCGA 59.773 57.895 0.00 0.00 0.00 5.14
3569 5817 1.922821 CCAATCCATTCCCGACCCT 59.077 57.895 0.00 0.00 0.00 4.34
3610 5860 2.126071 CGCGGACACAAGACGGAT 60.126 61.111 0.00 0.00 0.00 4.18
3616 5868 3.112075 CACAAGACGGATGCGCGT 61.112 61.111 6.51 0.00 0.00 6.01
3620 5874 4.742201 AGACGGATGCGCGTGCTT 62.742 61.111 23.16 16.45 43.34 3.91
3630 5884 2.908073 CGCGTGCTTGCCCTCTTTT 61.908 57.895 0.00 0.00 0.00 2.27
3687 5941 4.227134 CACTCGCCCGCCTGCTAT 62.227 66.667 0.00 0.00 0.00 2.97
3790 6046 2.553172 ACTACTCGTCGCTTTCTGACTT 59.447 45.455 0.00 0.00 34.17 3.01
3862 6118 2.612212 GCTCGTCTTCAAAGTTCCAACA 59.388 45.455 0.00 0.00 0.00 3.33
4008 6264 1.577421 TCGTCGACGATGTCTTGCA 59.423 52.632 34.97 11.39 44.22 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 4.530857 GAGGGGACATGACCGCCG 62.531 72.222 23.76 0.00 42.68 6.46
17 18 3.083997 AGAGGGGACATGACCGCC 61.084 66.667 23.76 18.89 42.68 6.13
18 19 2.187946 CAGAGGGGACATGACCGC 59.812 66.667 20.83 20.83 42.13 5.68
19 20 2.187946 GCAGAGGGGACATGACCG 59.812 66.667 8.14 0.00 0.00 4.79
20 21 2.300967 TGGCAGAGGGGACATGACC 61.301 63.158 5.56 5.56 0.00 4.02
21 22 1.078143 GTGGCAGAGGGGACATGAC 60.078 63.158 0.00 0.00 0.00 3.06
22 23 1.229625 AGTGGCAGAGGGGACATGA 60.230 57.895 0.00 0.00 0.00 3.07
23 24 1.077930 CAGTGGCAGAGGGGACATG 60.078 63.158 0.00 0.00 0.00 3.21
24 25 2.304056 CCAGTGGCAGAGGGGACAT 61.304 63.158 0.00 0.00 0.00 3.06
25 26 2.930019 CCAGTGGCAGAGGGGACA 60.930 66.667 0.00 0.00 0.00 4.02
36 37 3.726517 CGCCGTCTTTGCCAGTGG 61.727 66.667 4.20 4.20 0.00 4.00
37 38 2.664851 TCGCCGTCTTTGCCAGTG 60.665 61.111 0.00 0.00 0.00 3.66
38 39 2.665185 GTCGCCGTCTTTGCCAGT 60.665 61.111 0.00 0.00 0.00 4.00
39 40 3.777925 CGTCGCCGTCTTTGCCAG 61.778 66.667 0.00 0.00 0.00 4.85
51 52 4.699522 AGGAGGTTTGGCCGTCGC 62.700 66.667 0.00 0.00 43.70 5.19
52 53 2.434359 GAGGAGGTTTGGCCGTCG 60.434 66.667 0.00 0.00 43.70 5.12
53 54 2.046217 GGAGGAGGTTTGGCCGTC 60.046 66.667 0.00 0.00 43.70 4.79
54 55 4.016706 CGGAGGAGGTTTGGCCGT 62.017 66.667 0.00 0.00 43.70 5.68
55 56 2.925162 GATCGGAGGAGGTTTGGCCG 62.925 65.000 0.00 0.00 43.70 6.13
56 57 1.153147 GATCGGAGGAGGTTTGGCC 60.153 63.158 0.00 0.00 37.58 5.36
57 58 1.521681 CGATCGGAGGAGGTTTGGC 60.522 63.158 7.38 0.00 0.00 4.52
58 59 0.179108 GTCGATCGGAGGAGGTTTGG 60.179 60.000 16.41 0.00 0.00 3.28
59 60 0.525668 CGTCGATCGGAGGAGGTTTG 60.526 60.000 16.41 0.00 35.71 2.93
60 61 1.807886 CGTCGATCGGAGGAGGTTT 59.192 57.895 16.41 0.00 35.71 3.27
61 62 3.510846 CGTCGATCGGAGGAGGTT 58.489 61.111 16.41 0.00 35.71 3.50
70 71 0.643820 GTAGTTTTGGCCGTCGATCG 59.356 55.000 9.36 9.36 39.52 3.69
71 72 0.643820 CGTAGTTTTGGCCGTCGATC 59.356 55.000 0.00 0.00 0.00 3.69
72 73 0.244450 TCGTAGTTTTGGCCGTCGAT 59.756 50.000 0.00 0.00 0.00 3.59
73 74 0.664166 GTCGTAGTTTTGGCCGTCGA 60.664 55.000 0.00 0.00 0.00 4.20
74 75 1.620413 GGTCGTAGTTTTGGCCGTCG 61.620 60.000 0.00 0.00 0.00 5.12
75 76 0.600782 TGGTCGTAGTTTTGGCCGTC 60.601 55.000 0.00 0.00 0.00 4.79
76 77 0.179051 TTGGTCGTAGTTTTGGCCGT 60.179 50.000 0.00 0.00 0.00 5.68
77 78 0.945813 TTTGGTCGTAGTTTTGGCCG 59.054 50.000 0.00 0.00 0.00 6.13
78 79 1.335597 GCTTTGGTCGTAGTTTTGGCC 60.336 52.381 0.00 0.00 0.00 5.36
79 80 1.662026 CGCTTTGGTCGTAGTTTTGGC 60.662 52.381 0.00 0.00 0.00 4.52
80 81 1.662026 GCGCTTTGGTCGTAGTTTTGG 60.662 52.381 0.00 0.00 0.00 3.28
81 82 1.670326 GCGCTTTGGTCGTAGTTTTG 58.330 50.000 0.00 0.00 0.00 2.44
82 83 0.233848 CGCGCTTTGGTCGTAGTTTT 59.766 50.000 5.56 0.00 0.00 2.43
83 84 1.562575 CCGCGCTTTGGTCGTAGTTT 61.563 55.000 5.56 0.00 0.00 2.66
84 85 2.025418 CCGCGCTTTGGTCGTAGTT 61.025 57.895 5.56 0.00 0.00 2.24
85 86 2.431942 CCGCGCTTTGGTCGTAGT 60.432 61.111 5.56 0.00 0.00 2.73
86 87 3.186047 CCCGCGCTTTGGTCGTAG 61.186 66.667 5.56 0.00 0.00 3.51
108 109 4.451150 TCTCGACATGGCCGCCAC 62.451 66.667 16.16 0.61 35.80 5.01
109 110 4.451150 GTCTCGACATGGCCGCCA 62.451 66.667 16.17 16.17 38.19 5.69
111 112 4.796231 ACGTCTCGACATGGCCGC 62.796 66.667 0.00 0.00 0.00 6.53
112 113 2.880879 CACGTCTCGACATGGCCG 60.881 66.667 0.00 0.00 0.00 6.13
113 114 2.509336 CCACGTCTCGACATGGCC 60.509 66.667 0.00 0.00 37.88 5.36
116 117 0.790207 CCAAACCACGTCTCGACATG 59.210 55.000 0.00 0.00 0.00 3.21
117 118 0.391597 ACCAAACCACGTCTCGACAT 59.608 50.000 0.00 0.00 0.00 3.06
118 119 1.031235 TACCAAACCACGTCTCGACA 58.969 50.000 0.00 0.00 0.00 4.35
119 120 1.990563 CATACCAAACCACGTCTCGAC 59.009 52.381 0.00 0.00 0.00 4.20
120 121 1.067425 CCATACCAAACCACGTCTCGA 60.067 52.381 0.00 0.00 0.00 4.04
121 122 1.067425 TCCATACCAAACCACGTCTCG 60.067 52.381 0.00 0.00 0.00 4.04
122 123 2.344025 GTCCATACCAAACCACGTCTC 58.656 52.381 0.00 0.00 0.00 3.36
123 124 1.337447 CGTCCATACCAAACCACGTCT 60.337 52.381 0.00 0.00 0.00 4.18
124 125 1.073177 CGTCCATACCAAACCACGTC 58.927 55.000 0.00 0.00 0.00 4.34
125 126 0.320946 CCGTCCATACCAAACCACGT 60.321 55.000 0.00 0.00 0.00 4.49
126 127 1.641123 GCCGTCCATACCAAACCACG 61.641 60.000 0.00 0.00 0.00 4.94
127 128 1.310216 GGCCGTCCATACCAAACCAC 61.310 60.000 0.00 0.00 0.00 4.16
128 129 1.001887 GGCCGTCCATACCAAACCA 60.002 57.895 0.00 0.00 0.00 3.67
129 130 2.110352 CGGCCGTCCATACCAAACC 61.110 63.158 19.50 0.00 0.00 3.27
130 131 2.110352 CCGGCCGTCCATACCAAAC 61.110 63.158 26.12 0.00 0.00 2.93
131 132 2.269562 CCGGCCGTCCATACCAAA 59.730 61.111 26.12 0.00 0.00 3.28
132 133 3.788145 CCCGGCCGTCCATACCAA 61.788 66.667 26.12 0.00 0.00 3.67
156 157 4.803426 CGGACGCCTCCTCACAGC 62.803 72.222 0.07 0.00 33.79 4.40
157 158 4.135153 CCGGACGCCTCCTCACAG 62.135 72.222 0.00 0.00 33.79 3.66
158 159 4.671590 TCCGGACGCCTCCTCACA 62.672 66.667 0.00 0.00 33.79 3.58
159 160 3.827898 CTCCGGACGCCTCCTCAC 61.828 72.222 0.00 0.00 33.79 3.51
160 161 2.856039 ATTCTCCGGACGCCTCCTCA 62.856 60.000 0.00 0.00 33.79 3.86
161 162 0.822532 TATTCTCCGGACGCCTCCTC 60.823 60.000 0.00 0.00 33.79 3.71
162 163 0.824182 CTATTCTCCGGACGCCTCCT 60.824 60.000 0.00 0.00 33.79 3.69
163 164 1.660917 CTATTCTCCGGACGCCTCC 59.339 63.158 0.00 0.00 0.00 4.30
164 165 1.007154 GCTATTCTCCGGACGCCTC 60.007 63.158 0.00 0.00 0.00 4.70
165 166 2.846652 CGCTATTCTCCGGACGCCT 61.847 63.158 0.00 0.00 0.00 5.52
166 167 2.354773 CGCTATTCTCCGGACGCC 60.355 66.667 0.00 0.00 0.00 5.68
172 173 2.658593 CGCCACCGCTATTCTCCG 60.659 66.667 0.00 0.00 0.00 4.63
173 174 2.280186 CCGCCACCGCTATTCTCC 60.280 66.667 0.00 0.00 0.00 3.71
174 175 2.280186 CCCGCCACCGCTATTCTC 60.280 66.667 0.00 0.00 0.00 2.87
175 176 3.861797 CCCCGCCACCGCTATTCT 61.862 66.667 0.00 0.00 0.00 2.40
195 196 3.775654 CACACTCTCTCCCCGCCC 61.776 72.222 0.00 0.00 0.00 6.13
196 197 3.775654 CCACACTCTCTCCCCGCC 61.776 72.222 0.00 0.00 0.00 6.13
197 198 2.232298 CTTCCACACTCTCTCCCCGC 62.232 65.000 0.00 0.00 0.00 6.13
198 199 1.893786 CTTCCACACTCTCTCCCCG 59.106 63.158 0.00 0.00 0.00 5.73
199 200 1.599576 GCTTCCACACTCTCTCCCC 59.400 63.158 0.00 0.00 0.00 4.81
200 201 1.216710 CGCTTCCACACTCTCTCCC 59.783 63.158 0.00 0.00 0.00 4.30
201 202 0.318762 AACGCTTCCACACTCTCTCC 59.681 55.000 0.00 0.00 0.00 3.71
202 203 1.423395 CAACGCTTCCACACTCTCTC 58.577 55.000 0.00 0.00 0.00 3.20
203 204 0.034059 CCAACGCTTCCACACTCTCT 59.966 55.000 0.00 0.00 0.00 3.10
204 205 0.951040 CCCAACGCTTCCACACTCTC 60.951 60.000 0.00 0.00 0.00 3.20
205 206 1.071471 CCCAACGCTTCCACACTCT 59.929 57.895 0.00 0.00 0.00 3.24
206 207 0.951040 CTCCCAACGCTTCCACACTC 60.951 60.000 0.00 0.00 0.00 3.51
207 208 1.071471 CTCCCAACGCTTCCACACT 59.929 57.895 0.00 0.00 0.00 3.55
208 209 2.617274 GCTCCCAACGCTTCCACAC 61.617 63.158 0.00 0.00 0.00 3.82
209 210 2.281484 GCTCCCAACGCTTCCACA 60.281 61.111 0.00 0.00 0.00 4.17
210 211 3.423154 CGCTCCCAACGCTTCCAC 61.423 66.667 0.00 0.00 0.00 4.02
211 212 4.697756 CCGCTCCCAACGCTTCCA 62.698 66.667 0.00 0.00 0.00 3.53
212 213 4.388499 TCCGCTCCCAACGCTTCC 62.388 66.667 0.00 0.00 0.00 3.46
213 214 2.815647 CTCCGCTCCCAACGCTTC 60.816 66.667 0.00 0.00 0.00 3.86
214 215 4.394712 CCTCCGCTCCCAACGCTT 62.395 66.667 0.00 0.00 0.00 4.68
217 218 4.452733 GTCCCTCCGCTCCCAACG 62.453 72.222 0.00 0.00 0.00 4.10
218 219 3.003763 AGTCCCTCCGCTCCCAAC 61.004 66.667 0.00 0.00 0.00 3.77
219 220 3.003173 CAGTCCCTCCGCTCCCAA 61.003 66.667 0.00 0.00 0.00 4.12
222 223 2.442272 TAGCAGTCCCTCCGCTCC 60.442 66.667 0.00 0.00 37.20 4.70
223 224 1.755008 ACTAGCAGTCCCTCCGCTC 60.755 63.158 0.00 0.00 37.20 5.03
224 225 2.055042 CACTAGCAGTCCCTCCGCT 61.055 63.158 0.00 0.00 39.80 5.52
225 226 2.286127 GACACTAGCAGTCCCTCCGC 62.286 65.000 4.92 0.00 0.00 5.54
226 227 1.810532 GACACTAGCAGTCCCTCCG 59.189 63.158 4.92 0.00 0.00 4.63
232 233 1.248785 TGTCGGGGACACTAGCAGTC 61.249 60.000 7.26 7.26 37.67 3.51
233 234 1.228769 TGTCGGGGACACTAGCAGT 60.229 57.895 0.00 0.00 37.67 4.40
234 235 1.513158 CTGTCGGGGACACTAGCAG 59.487 63.158 0.00 0.00 37.67 4.24
235 236 1.982395 CCTGTCGGGGACACTAGCA 60.982 63.158 0.00 0.00 37.67 3.49
236 237 2.893398 CCTGTCGGGGACACTAGC 59.107 66.667 0.00 0.00 37.67 3.42
237 238 2.893398 GCCTGTCGGGGACACTAG 59.107 66.667 0.00 0.00 37.67 2.57
238 239 3.066190 CGCCTGTCGGGGACACTA 61.066 66.667 0.00 0.00 45.63 2.74
253 254 3.934391 CTTGTCTCCCGTGACCCGC 62.934 68.421 0.00 0.00 36.21 6.13
254 255 2.261671 CTTGTCTCCCGTGACCCG 59.738 66.667 0.00 0.00 36.21 5.28
255 256 2.663196 CCTTGTCTCCCGTGACCC 59.337 66.667 0.00 0.00 36.21 4.46
256 257 2.663196 CCCTTGTCTCCCGTGACC 59.337 66.667 0.00 0.00 36.21 4.02
257 258 2.047179 GCCCTTGTCTCCCGTGAC 60.047 66.667 0.00 0.00 37.47 3.67
258 259 3.691342 CGCCCTTGTCTCCCGTGA 61.691 66.667 0.00 0.00 0.00 4.35
259 260 4.003788 ACGCCCTTGTCTCCCGTG 62.004 66.667 0.00 0.00 0.00 4.94
260 261 4.003788 CACGCCCTTGTCTCCCGT 62.004 66.667 0.00 0.00 0.00 5.28
263 264 4.681978 ACGCACGCCCTTGTCTCC 62.682 66.667 0.00 0.00 0.00 3.71
264 265 3.112709 GACGCACGCCCTTGTCTC 61.113 66.667 0.00 0.00 0.00 3.36
295 296 4.973055 TGGGGTGAAACGGACGCG 62.973 66.667 3.53 3.53 38.12 6.01
296 297 2.188161 TTTGGGGTGAAACGGACGC 61.188 57.895 0.00 0.00 38.12 5.19
297 298 1.650363 GTTTGGGGTGAAACGGACG 59.350 57.895 0.00 0.00 38.12 4.79
298 299 0.752376 TGGTTTGGGGTGAAACGGAC 60.752 55.000 0.00 0.00 38.12 4.79
299 300 0.033405 TTGGTTTGGGGTGAAACGGA 60.033 50.000 0.00 0.00 38.12 4.69
300 301 0.387565 CTTGGTTTGGGGTGAAACGG 59.612 55.000 0.00 0.00 38.12 4.44
301 302 0.249280 GCTTGGTTTGGGGTGAAACG 60.249 55.000 0.00 0.00 38.12 3.60
302 303 0.827368 TGCTTGGTTTGGGGTGAAAC 59.173 50.000 0.00 0.00 35.45 2.78
303 304 0.827368 GTGCTTGGTTTGGGGTGAAA 59.173 50.000 0.00 0.00 0.00 2.69
304 305 0.324738 TGTGCTTGGTTTGGGGTGAA 60.325 50.000 0.00 0.00 0.00 3.18
305 306 0.324738 TTGTGCTTGGTTTGGGGTGA 60.325 50.000 0.00 0.00 0.00 4.02
306 307 0.104671 CTTGTGCTTGGTTTGGGGTG 59.895 55.000 0.00 0.00 0.00 4.61
307 308 0.325203 ACTTGTGCTTGGTTTGGGGT 60.325 50.000 0.00 0.00 0.00 4.95
308 309 0.829990 AACTTGTGCTTGGTTTGGGG 59.170 50.000 0.00 0.00 0.00 4.96
309 310 2.093764 TCAAACTTGTGCTTGGTTTGGG 60.094 45.455 14.79 0.00 45.41 4.12
310 311 3.244033 TCAAACTTGTGCTTGGTTTGG 57.756 42.857 14.79 1.45 45.41 3.28
311 312 3.370672 GGTTCAAACTTGTGCTTGGTTTG 59.629 43.478 10.36 10.36 46.18 2.93
312 313 3.595173 GGTTCAAACTTGTGCTTGGTTT 58.405 40.909 0.00 0.00 34.10 3.27
313 314 2.416701 CGGTTCAAACTTGTGCTTGGTT 60.417 45.455 0.00 0.00 0.00 3.67
314 315 1.134175 CGGTTCAAACTTGTGCTTGGT 59.866 47.619 0.00 0.00 0.00 3.67
315 316 1.535860 CCGGTTCAAACTTGTGCTTGG 60.536 52.381 0.00 0.00 0.00 3.61
316 317 1.535860 CCCGGTTCAAACTTGTGCTTG 60.536 52.381 0.00 0.00 0.00 4.01
317 318 0.744281 CCCGGTTCAAACTTGTGCTT 59.256 50.000 0.00 0.00 0.00 3.91
318 319 1.106944 CCCCGGTTCAAACTTGTGCT 61.107 55.000 0.00 0.00 0.00 4.40
319 320 1.104577 TCCCCGGTTCAAACTTGTGC 61.105 55.000 0.00 0.00 0.00 4.57
320 321 0.666374 GTCCCCGGTTCAAACTTGTG 59.334 55.000 0.00 0.00 0.00 3.33
321 322 0.816421 CGTCCCCGGTTCAAACTTGT 60.816 55.000 0.00 0.00 0.00 3.16
322 323 1.946267 CGTCCCCGGTTCAAACTTG 59.054 57.895 0.00 0.00 0.00 3.16
323 324 4.468007 CGTCCCCGGTTCAAACTT 57.532 55.556 0.00 0.00 0.00 2.66
333 334 2.609759 CGTTTTTGACCCGTCCCCG 61.610 63.158 0.00 0.00 0.00 5.73
334 335 2.263021 CCGTTTTTGACCCGTCCCC 61.263 63.158 0.00 0.00 0.00 4.81
335 336 1.227913 TCCGTTTTTGACCCGTCCC 60.228 57.895 0.00 0.00 0.00 4.46
336 337 1.834458 CGTCCGTTTTTGACCCGTCC 61.834 60.000 0.00 0.00 0.00 4.79
337 338 0.875474 TCGTCCGTTTTTGACCCGTC 60.875 55.000 0.00 0.00 0.00 4.79
338 339 0.461693 TTCGTCCGTTTTTGACCCGT 60.462 50.000 0.00 0.00 0.00 5.28
339 340 0.656785 TTTCGTCCGTTTTTGACCCG 59.343 50.000 0.00 0.00 0.00 5.28
340 341 2.351060 GGATTTCGTCCGTTTTTGACCC 60.351 50.000 0.00 0.00 37.23 4.46
341 342 2.924903 GGATTTCGTCCGTTTTTGACC 58.075 47.619 0.00 0.00 37.23 4.02
351 352 2.081462 ACAAATGTCCGGATTTCGTCC 58.919 47.619 7.81 0.00 44.10 4.79
352 353 3.385079 GACAAATGTCCGGATTTCGTC 57.615 47.619 7.81 11.43 39.07 4.20
363 364 1.068541 GGCCTCAAACGGACAAATGTC 60.069 52.381 4.96 4.96 44.04 3.06
364 365 0.958822 GGCCTCAAACGGACAAATGT 59.041 50.000 0.00 0.00 30.13 2.71
365 366 0.109781 CGGCCTCAAACGGACAAATG 60.110 55.000 0.00 0.00 30.13 2.32
366 367 1.862602 GCGGCCTCAAACGGACAAAT 61.863 55.000 0.00 0.00 30.13 2.32
367 368 2.548295 GCGGCCTCAAACGGACAAA 61.548 57.895 0.00 0.00 30.13 2.83
368 369 2.975799 GCGGCCTCAAACGGACAA 60.976 61.111 0.00 0.00 30.13 3.18
369 370 4.243008 TGCGGCCTCAAACGGACA 62.243 61.111 0.00 0.00 30.13 4.02
370 371 3.723348 GTGCGGCCTCAAACGGAC 61.723 66.667 0.00 0.00 43.62 4.79
373 374 3.726517 CAGGTGCGGCCTCAAACG 61.727 66.667 0.00 0.00 46.96 3.60
374 375 1.896660 TTCAGGTGCGGCCTCAAAC 60.897 57.895 0.00 0.00 46.96 2.93
375 376 1.896660 GTTCAGGTGCGGCCTCAAA 60.897 57.895 0.00 0.00 46.96 2.69
376 377 2.281484 GTTCAGGTGCGGCCTCAA 60.281 61.111 0.00 0.00 46.96 3.02
377 378 2.616797 TTTGTTCAGGTGCGGCCTCA 62.617 55.000 0.00 0.00 46.96 3.86
378 379 1.244019 ATTTGTTCAGGTGCGGCCTC 61.244 55.000 0.00 0.00 46.96 4.70
380 381 0.451783 CTATTTGTTCAGGTGCGGCC 59.548 55.000 0.00 0.00 37.58 6.13
381 382 0.451783 CCTATTTGTTCAGGTGCGGC 59.548 55.000 0.00 0.00 0.00 6.53
382 383 1.094785 CCCTATTTGTTCAGGTGCGG 58.905 55.000 0.00 0.00 0.00 5.69
383 384 1.737793 GACCCTATTTGTTCAGGTGCG 59.262 52.381 0.00 0.00 0.00 5.34
384 385 1.737793 CGACCCTATTTGTTCAGGTGC 59.262 52.381 0.00 0.00 0.00 5.01
385 386 1.737793 GCGACCCTATTTGTTCAGGTG 59.262 52.381 0.00 0.00 0.00 4.00
386 387 1.674817 CGCGACCCTATTTGTTCAGGT 60.675 52.381 0.00 0.00 0.00 4.00
387 388 1.006832 CGCGACCCTATTTGTTCAGG 58.993 55.000 0.00 0.00 0.00 3.86
388 389 0.373716 GCGCGACCCTATTTGTTCAG 59.626 55.000 12.10 0.00 0.00 3.02
389 390 1.355796 CGCGCGACCCTATTTGTTCA 61.356 55.000 28.94 0.00 0.00 3.18
390 391 1.347221 CGCGCGACCCTATTTGTTC 59.653 57.895 28.94 0.00 0.00 3.18
391 392 2.104253 CCGCGCGACCCTATTTGTT 61.104 57.895 34.63 0.00 0.00 2.83
392 393 2.510691 CCGCGCGACCCTATTTGT 60.511 61.111 34.63 0.00 0.00 2.83
393 394 2.510691 ACCGCGCGACCCTATTTG 60.511 61.111 34.63 13.76 0.00 2.32
394 395 2.510691 CACCGCGCGACCCTATTT 60.511 61.111 34.63 1.06 0.00 1.40
395 396 4.524318 CCACCGCGCGACCCTATT 62.524 66.667 34.63 2.64 0.00 1.73
405 406 3.599285 TAAGCCCAACTCCACCGCG 62.599 63.158 0.00 0.00 0.00 6.46
406 407 1.745489 CTAAGCCCAACTCCACCGC 60.745 63.158 0.00 0.00 0.00 5.68
407 408 0.036306 AACTAAGCCCAACTCCACCG 59.964 55.000 0.00 0.00 0.00 4.94
408 409 2.287977 AAACTAAGCCCAACTCCACC 57.712 50.000 0.00 0.00 0.00 4.61
409 410 2.747989 GCTAAACTAAGCCCAACTCCAC 59.252 50.000 0.00 0.00 36.45 4.02
410 411 3.067684 GCTAAACTAAGCCCAACTCCA 57.932 47.619 0.00 0.00 36.45 3.86
419 420 2.094700 GCCTGTTTGGGCTAAACTAAGC 60.095 50.000 24.04 19.37 46.96 3.09
420 421 3.850122 GCCTGTTTGGGCTAAACTAAG 57.150 47.619 24.04 15.16 46.96 2.18
446 447 1.227383 GCCTCGGGATGTGGGAAAT 59.773 57.895 0.00 0.00 0.00 2.17
462 463 2.818274 CTCCCTTTACGGCGTGCC 60.818 66.667 24.86 0.00 0.00 5.01
489 490 4.589216 AATAATTGTTGCATGGATCGGG 57.411 40.909 0.00 0.00 0.00 5.14
492 493 7.934457 AGTGAGTAATAATTGTTGCATGGATC 58.066 34.615 5.86 0.00 0.00 3.36
529 530 3.524541 GAATTGTTTGGGCATCATGTCC 58.475 45.455 0.00 0.00 43.98 4.02
531 532 2.236893 GGGAATTGTTTGGGCATCATGT 59.763 45.455 0.00 0.00 0.00 3.21
532 533 2.420408 GGGGAATTGTTTGGGCATCATG 60.420 50.000 0.00 0.00 0.00 3.07
533 534 1.839354 GGGGAATTGTTTGGGCATCAT 59.161 47.619 0.00 0.00 0.00 2.45
534 535 1.274712 GGGGAATTGTTTGGGCATCA 58.725 50.000 0.00 0.00 0.00 3.07
535 536 0.541392 GGGGGAATTGTTTGGGCATC 59.459 55.000 0.00 0.00 0.00 3.91
536 537 2.695561 GGGGGAATTGTTTGGGCAT 58.304 52.632 0.00 0.00 0.00 4.40
537 538 4.224105 GGGGGAATTGTTTGGGCA 57.776 55.556 0.00 0.00 0.00 5.36
551 552 0.963856 GGTAAGAAAAGCCGTGGGGG 60.964 60.000 0.00 0.00 39.58 5.40
553 554 0.879090 GTGGTAAGAAAAGCCGTGGG 59.121 55.000 0.00 0.00 0.00 4.61
565 566 1.509923 GACGGACGGAGGTGGTAAG 59.490 63.158 0.00 0.00 0.00 2.34
664 2476 3.231736 AGCAAGGGGACGACGTGT 61.232 61.111 4.58 0.00 0.00 4.49
665 2477 2.738521 CAGCAAGGGGACGACGTG 60.739 66.667 4.58 0.00 0.00 4.49
773 2595 2.842462 TCAGTCGCCACCACCACT 60.842 61.111 0.00 0.00 0.00 4.00
843 2679 3.522731 CCGGCTCACTCCTCCTCG 61.523 72.222 0.00 0.00 0.00 4.63
850 2686 2.680352 TCCACCTCCGGCTCACTC 60.680 66.667 0.00 0.00 0.00 3.51
851 2687 2.681778 CTCCACCTCCGGCTCACT 60.682 66.667 0.00 0.00 0.00 3.41
852 2688 1.827399 TTTCTCCACCTCCGGCTCAC 61.827 60.000 0.00 0.00 0.00 3.51
853 2689 1.125093 TTTTCTCCACCTCCGGCTCA 61.125 55.000 0.00 0.00 0.00 4.26
854 2690 0.036306 TTTTTCTCCACCTCCGGCTC 59.964 55.000 0.00 0.00 0.00 4.70
882 2718 3.753434 ACGCTCTGTCGCCCTCTG 61.753 66.667 0.00 0.00 0.00 3.35
883 2719 3.753434 CACGCTCTGTCGCCCTCT 61.753 66.667 0.00 0.00 0.00 3.69
884 2720 3.749064 TCACGCTCTGTCGCCCTC 61.749 66.667 0.00 0.00 0.00 4.30
885 2721 4.057428 GTCACGCTCTGTCGCCCT 62.057 66.667 0.00 0.00 0.00 5.19
886 2722 3.858868 TTGTCACGCTCTGTCGCCC 62.859 63.158 0.00 0.00 0.00 6.13
888 2724 0.939577 TTCTTGTCACGCTCTGTCGC 60.940 55.000 0.00 0.00 0.00 5.19
889 2725 1.056103 CTTCTTGTCACGCTCTGTCG 58.944 55.000 0.00 0.00 0.00 4.35
891 2727 2.101582 AGTTCTTCTTGTCACGCTCTGT 59.898 45.455 0.00 0.00 0.00 3.41
892 2728 2.728839 GAGTTCTTCTTGTCACGCTCTG 59.271 50.000 0.00 0.00 0.00 3.35
893 2729 2.288518 GGAGTTCTTCTTGTCACGCTCT 60.289 50.000 0.00 0.00 0.00 4.09
894 2730 2.062519 GGAGTTCTTCTTGTCACGCTC 58.937 52.381 0.00 0.00 0.00 5.03
897 2733 1.344763 AGGGGAGTTCTTCTTGTCACG 59.655 52.381 0.00 0.00 0.00 4.35
899 2735 1.978580 GGAGGGGAGTTCTTCTTGTCA 59.021 52.381 0.00 0.00 0.00 3.58
932 2779 3.058160 CAGAAGTGGCAAGGCGGG 61.058 66.667 0.00 0.00 0.00 6.13
935 2782 1.303155 AGAGCAGAAGTGGCAAGGC 60.303 57.895 0.00 0.00 0.00 4.35
992 2839 1.675641 GGACGAGGCATGGCTTTGT 60.676 57.895 24.18 23.21 34.92 2.83
1351 3210 2.338785 GCAGCTTGAGCCCTTGGAC 61.339 63.158 0.00 0.00 43.38 4.02
1353 3212 2.035312 AGCAGCTTGAGCCCTTGG 59.965 61.111 0.00 0.00 43.38 3.61
1591 3450 0.745845 CTCCCCGCCAAGAGATTGTG 60.746 60.000 0.00 0.00 31.43 3.33
1603 3462 4.547367 CACCGGAATCCTCCCCGC 62.547 72.222 9.46 0.00 44.07 6.13
1773 3641 1.821332 GCTCATCTTCCCCTTGCCG 60.821 63.158 0.00 0.00 0.00 5.69
1851 3719 2.344950 CAGAAGTAGCAGAACAGCAGG 58.655 52.381 0.00 0.00 36.85 4.85
1857 3725 1.362406 GCGGCCAGAAGTAGCAGAAC 61.362 60.000 2.24 0.00 0.00 3.01
2219 4090 2.282180 GCACGATGTTGGGGTGGT 60.282 61.111 0.00 0.00 32.42 4.16
2294 4165 2.359230 AGAAGAGGCTGCCGTTGC 60.359 61.111 13.96 4.09 38.26 4.17
2329 4200 1.017387 GAATTAAGCGGGGCAGAGTG 58.983 55.000 0.00 0.00 0.00 3.51
2330 4201 0.912486 AGAATTAAGCGGGGCAGAGT 59.088 50.000 0.00 0.00 0.00 3.24
2337 4208 1.308998 ATGGCGAAGAATTAAGCGGG 58.691 50.000 0.00 0.00 33.38 6.13
3131 5376 1.673923 GCCCCAAGTACTGTACCGAAC 60.674 57.143 14.05 0.00 0.00 3.95
3134 5379 0.611714 AAGCCCCAAGTACTGTACCG 59.388 55.000 14.05 6.22 0.00 4.02
3140 5388 3.074538 ACTCAATCAAAGCCCCAAGTACT 59.925 43.478 0.00 0.00 0.00 2.73
3141 5389 3.421844 ACTCAATCAAAGCCCCAAGTAC 58.578 45.455 0.00 0.00 0.00 2.73
3142 5390 3.806949 ACTCAATCAAAGCCCCAAGTA 57.193 42.857 0.00 0.00 0.00 2.24
3143 5391 2.629617 CAACTCAATCAAAGCCCCAAGT 59.370 45.455 0.00 0.00 0.00 3.16
3144 5392 2.629617 ACAACTCAATCAAAGCCCCAAG 59.370 45.455 0.00 0.00 0.00 3.61
3145 5393 2.364970 CACAACTCAATCAAAGCCCCAA 59.635 45.455 0.00 0.00 0.00 4.12
3146 5394 1.962807 CACAACTCAATCAAAGCCCCA 59.037 47.619 0.00 0.00 0.00 4.96
3147 5395 2.238521 TCACAACTCAATCAAAGCCCC 58.761 47.619 0.00 0.00 0.00 5.80
3148 5396 4.525912 AATCACAACTCAATCAAAGCCC 57.474 40.909 0.00 0.00 0.00 5.19
3149 5397 5.176223 CACAAATCACAACTCAATCAAAGCC 59.824 40.000 0.00 0.00 0.00 4.35
3150 5398 5.332808 GCACAAATCACAACTCAATCAAAGC 60.333 40.000 0.00 0.00 0.00 3.51
3151 5399 5.981315 AGCACAAATCACAACTCAATCAAAG 59.019 36.000 0.00 0.00 0.00 2.77
3152 5400 5.904941 AGCACAAATCACAACTCAATCAAA 58.095 33.333 0.00 0.00 0.00 2.69
3161 5409 5.810074 AGTTAACCAAAGCACAAATCACAAC 59.190 36.000 0.88 0.00 0.00 3.32
3162 5410 5.809562 CAGTTAACCAAAGCACAAATCACAA 59.190 36.000 0.88 0.00 0.00 3.33
3210 5458 1.573829 CCAACGGACCACACCAATCG 61.574 60.000 0.00 0.00 0.00 3.34
3230 5478 5.605908 ACACCATCACCAGATCAGATAAGAT 59.394 40.000 0.00 0.00 30.20 2.40
3231 5479 4.964897 ACACCATCACCAGATCAGATAAGA 59.035 41.667 0.00 0.00 30.20 2.10
3232 5480 5.287674 ACACCATCACCAGATCAGATAAG 57.712 43.478 0.00 0.00 30.20 1.73
3233 5481 5.045651 ACAACACCATCACCAGATCAGATAA 60.046 40.000 0.00 0.00 30.20 1.75
3234 5482 4.471025 ACAACACCATCACCAGATCAGATA 59.529 41.667 0.00 0.00 30.20 1.98
3245 5493 5.585844 TCATCATCATGTACAACACCATCAC 59.414 40.000 0.00 0.00 0.00 3.06
3302 5550 6.318648 TCAACTCACACAATAATAATCCAGCC 59.681 38.462 0.00 0.00 0.00 4.85
3351 5599 0.924090 GAGGATCACATCGACGCAAC 59.076 55.000 0.00 0.00 33.17 4.17
3448 5696 0.660595 CGCGGACGAAATAGATCGCT 60.661 55.000 0.00 0.00 46.51 4.93
3553 5801 2.919772 AAAAGGGTCGGGAATGGATT 57.080 45.000 0.00 0.00 0.00 3.01
3616 5868 1.609208 GTGAGAAAAGAGGGCAAGCA 58.391 50.000 0.00 0.00 0.00 3.91
3620 5874 1.374947 CCGGTGAGAAAAGAGGGCA 59.625 57.895 0.00 0.00 0.00 5.36
3740 5996 8.706035 TCTTTTTCTTTTATCTGTGTACGCTAC 58.294 33.333 8.10 0.00 0.00 3.58
3790 6046 1.064906 AGGAGGACATTACCGAGTCGA 60.065 52.381 15.64 0.00 35.63 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.