Multiple sequence alignment - TraesCS3D01G040400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G040400 chr3D 100.000 2724 0 0 1 2724 15367088 15364365 0.000000e+00 5031.0
1 TraesCS3D01G040400 chr3D 91.577 1211 84 7 772 1977 15387882 15386685 0.000000e+00 1655.0
2 TraesCS3D01G040400 chr3D 88.918 776 44 8 1 772 15388655 15387918 0.000000e+00 918.0
3 TraesCS3D01G040400 chr3D 83.735 664 91 12 774 1433 15342050 15341400 1.790000e-171 612.0
4 TraesCS3D01G040400 chr3D 88.530 279 29 2 495 770 15342371 15342093 4.350000e-88 335.0
5 TraesCS3D01G040400 chr3D 77.033 209 44 2 1653 1861 15341389 15341185 1.710000e-22 117.0
6 TraesCS3D01G040400 chr3D 89.024 82 7 1 2199 2280 600660501 600660580 1.730000e-17 100.0
7 TraesCS3D01G040400 chr3B 94.051 2219 102 15 1 2208 22517610 22519809 0.000000e+00 3339.0
8 TraesCS3D01G040400 chr3B 81.793 1093 164 21 774 1861 22459170 22458108 0.000000e+00 883.0
9 TraesCS3D01G040400 chr3B 81.593 1092 167 21 774 1861 22321271 22320210 0.000000e+00 872.0
10 TraesCS3D01G040400 chr3B 84.257 451 50 14 1 436 22322155 22321711 1.170000e-113 420.0
11 TraesCS3D01G040400 chr3B 88.889 279 28 2 495 770 22459491 22459213 9.340000e-90 340.0
12 TraesCS3D01G040400 chr3A 93.336 2206 121 12 1 2206 20915046 20917225 0.000000e+00 3236.0
13 TraesCS3D01G040400 chr3A 91.247 1211 88 8 772 1977 20843546 20844743 0.000000e+00 1633.0
14 TraesCS3D01G040400 chr3A 90.402 771 46 13 1 769 20842763 20843507 0.000000e+00 989.0
15 TraesCS3D01G040400 chr3A 83.267 1004 143 14 774 1775 20938666 20939646 0.000000e+00 900.0
16 TraesCS3D01G040400 chr3A 91.935 248 20 0 524 771 20938377 20938624 5.580000e-92 348.0
17 TraesCS3D01G040400 chr3A 82.324 413 59 11 1 403 20937814 20938222 2.010000e-91 346.0
18 TraesCS3D01G040400 chr3A 93.976 83 5 0 2639 2721 20929901 20929983 2.850000e-25 126.0
19 TraesCS3D01G040400 chr5D 83.911 1212 162 22 519 1727 558340694 558339513 0.000000e+00 1127.0
20 TraesCS3D01G040400 chr5D 80.818 391 46 14 1 371 558341264 558340883 2.070000e-71 279.0
21 TraesCS3D01G040400 chr5D 88.889 63 7 0 2218 2280 543473227 543473165 8.090000e-11 78.7
22 TraesCS3D01G040400 chr4A 83.593 1219 155 28 519 1727 611265364 611264181 0.000000e+00 1101.0
23 TraesCS3D01G040400 chr4A 82.474 388 42 12 1 371 611265934 611265556 1.570000e-82 316.0
24 TraesCS3D01G040400 chr5B 83.320 1217 165 25 516 1727 704311695 704312878 0.000000e+00 1088.0
25 TraesCS3D01G040400 chr5B 81.395 387 46 13 3 371 704311130 704311508 2.650000e-75 292.0
26 TraesCS3D01G040400 chr5B 86.842 76 9 1 2212 2287 482988819 482988745 1.740000e-12 84.2
27 TraesCS3D01G040400 chr2D 78.865 899 150 23 827 1706 2449310 2448433 3.040000e-159 571.0
28 TraesCS3D01G040400 chr2D 85.802 162 19 3 199 358 2450240 2450081 4.660000e-38 169.0
29 TraesCS3D01G040400 chr6B 90.870 230 18 2 2410 2638 54413261 54413034 3.410000e-79 305.0
30 TraesCS3D01G040400 chr5A 93.671 79 5 0 2206 2284 181418131 181418053 4.760000e-23 119.0
31 TraesCS3D01G040400 chr5A 92.405 79 6 0 2206 2284 181418414 181418336 2.220000e-21 113.0
32 TraesCS3D01G040400 chr2B 90.789 76 6 1 2206 2281 560438186 560438260 1.730000e-17 100.0
33 TraesCS3D01G040400 chr4B 89.474 76 8 0 2206 2281 552025338 552025413 2.230000e-16 97.1
34 TraesCS3D01G040400 chr4D 89.333 75 8 0 2206 2280 71378677 71378603 8.030000e-16 95.3
35 TraesCS3D01G040400 chr7B 84.810 79 12 0 2202 2280 256179159 256179081 2.250000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G040400 chr3D 15364365 15367088 2723 True 5031.000000 5031 100.000000 1 2724 1 chr3D.!!$R1 2723
1 TraesCS3D01G040400 chr3D 15386685 15388655 1970 True 1286.500000 1655 90.247500 1 1977 2 chr3D.!!$R3 1976
2 TraesCS3D01G040400 chr3D 15341185 15342371 1186 True 354.666667 612 83.099333 495 1861 3 chr3D.!!$R2 1366
3 TraesCS3D01G040400 chr3B 22517610 22519809 2199 False 3339.000000 3339 94.051000 1 2208 1 chr3B.!!$F1 2207
4 TraesCS3D01G040400 chr3B 22320210 22322155 1945 True 646.000000 872 82.925000 1 1861 2 chr3B.!!$R1 1860
5 TraesCS3D01G040400 chr3B 22458108 22459491 1383 True 611.500000 883 85.341000 495 1861 2 chr3B.!!$R2 1366
6 TraesCS3D01G040400 chr3A 20915046 20917225 2179 False 3236.000000 3236 93.336000 1 2206 1 chr3A.!!$F1 2205
7 TraesCS3D01G040400 chr3A 20842763 20844743 1980 False 1311.000000 1633 90.824500 1 1977 2 chr3A.!!$F3 1976
8 TraesCS3D01G040400 chr3A 20937814 20939646 1832 False 531.333333 900 85.842000 1 1775 3 chr3A.!!$F4 1774
9 TraesCS3D01G040400 chr5D 558339513 558341264 1751 True 703.000000 1127 82.364500 1 1727 2 chr5D.!!$R2 1726
10 TraesCS3D01G040400 chr4A 611264181 611265934 1753 True 708.500000 1101 83.033500 1 1727 2 chr4A.!!$R1 1726
11 TraesCS3D01G040400 chr5B 704311130 704312878 1748 False 690.000000 1088 82.357500 3 1727 2 chr5B.!!$F1 1724
12 TraesCS3D01G040400 chr2D 2448433 2450240 1807 True 370.000000 571 82.333500 199 1706 2 chr2D.!!$R1 1507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
418 481 2.615447 AGGCAAGATAACATGCATCACG 59.385 45.455 0.0 0.0 41.66 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2313 2696 0.030369 CTATCCACCACTACGTCCGC 59.97 60.0 0.0 0.0 0.0 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
225 257 5.047021 TCACGAGTTTCAAGAAGGAGATGAT 60.047 40.000 0.00 0.00 0.00 2.45
276 308 5.383130 GCCGAGTTTTCAGTATTTGACTTC 58.617 41.667 0.00 0.00 35.64 3.01
418 481 2.615447 AGGCAAGATAACATGCATCACG 59.385 45.455 0.00 0.00 41.66 4.35
436 500 7.970614 TGCATCACGATTATCATCAGAGTATAC 59.029 37.037 0.00 0.00 0.00 1.47
701 966 6.133356 AGGAGAGGAGAAAATACTGGTCTAG 58.867 44.000 0.00 0.00 0.00 2.43
811 1160 8.548721 TCTCGTCTTTTGATTGTTTCTTTAGAC 58.451 33.333 0.00 0.00 0.00 2.59
812 1161 8.203937 TCGTCTTTTGATTGTTTCTTTAGACA 57.796 30.769 0.00 0.00 31.56 3.41
861 1211 8.824159 TTAACTTATGAGCAGATGAAGATAGC 57.176 34.615 0.00 0.00 0.00 2.97
1005 1355 6.037610 ACATTCTCTTGGATAGCGAAATGAAC 59.962 38.462 0.00 0.00 31.77 3.18
1213 1566 0.839946 ACCTGAGTATGCATCCCACC 59.160 55.000 0.19 0.00 0.00 4.61
1214 1567 0.839277 CCTGAGTATGCATCCCACCA 59.161 55.000 0.19 0.00 0.00 4.17
1466 1837 1.739466 GGAGCGAACTCATTGATGCAA 59.261 47.619 0.00 0.00 45.42 4.08
1558 1929 2.183478 ATGCAGTTGATCGACCAACA 57.817 45.000 24.32 4.53 46.48 3.33
1565 1936 4.024133 CAGTTGATCGACCAACAATGTTGA 60.024 41.667 24.32 7.65 46.48 3.18
1810 2185 1.195674 GAAGCGCACAACTTCTTCTCC 59.804 52.381 11.47 0.00 40.33 3.71
1867 2242 7.622713 TGGATGTAGCCAATCAAAATCAAAAT 58.377 30.769 0.00 0.00 34.31 1.82
1934 2309 5.552870 ATGGTTCTAGGCGATCAAACTAT 57.447 39.130 0.00 0.00 0.00 2.12
1954 2331 6.783162 ACTATCGATAGTTGTATGGTATCGC 58.217 40.000 28.45 0.00 43.33 4.58
1957 2334 4.276431 TCGATAGTTGTATGGTATCGCACA 59.724 41.667 6.18 0.00 43.33 4.57
1977 2354 3.054802 ACAAACTCTCCACCATCCAGATC 60.055 47.826 0.00 0.00 0.00 2.75
1993 2370 4.770531 TCCAGATCACGTCCTCTCTTTTTA 59.229 41.667 0.00 0.00 0.00 1.52
2010 2387 7.174946 TCTCTTTTTAAACCATGTAGCTTGGAG 59.825 37.037 9.96 0.00 37.69 3.86
2071 2452 6.893759 TGAAATTAAGTTGATGTACACCGTG 58.106 36.000 0.00 0.00 0.00 4.94
2131 2513 1.202770 AGAAGGAAGTGGTTTGACCGG 60.203 52.381 0.00 0.00 42.58 5.28
2217 2600 7.867445 AATAAAATACAAAAGCTGGAACACG 57.133 32.000 0.00 0.00 0.00 4.49
2218 2601 4.911514 AAATACAAAAGCTGGAACACGT 57.088 36.364 0.00 0.00 0.00 4.49
2219 2602 4.483476 AATACAAAAGCTGGAACACGTC 57.517 40.909 0.00 0.00 0.00 4.34
2220 2603 0.655733 ACAAAAGCTGGAACACGTCG 59.344 50.000 0.00 0.00 0.00 5.12
2221 2604 0.657368 CAAAAGCTGGAACACGTCGC 60.657 55.000 0.00 0.00 0.00 5.19
2222 2605 0.814010 AAAAGCTGGAACACGTCGCT 60.814 50.000 0.00 0.00 0.00 4.93
2223 2606 1.498865 AAAGCTGGAACACGTCGCTG 61.499 55.000 0.00 0.00 0.00 5.18
2224 2607 2.644555 AAGCTGGAACACGTCGCTGT 62.645 55.000 0.00 0.00 0.00 4.40
2225 2608 2.658707 GCTGGAACACGTCGCTGTC 61.659 63.158 0.00 0.00 0.00 3.51
2226 2609 2.022129 CTGGAACACGTCGCTGTCC 61.022 63.158 0.00 0.00 0.00 4.02
2227 2610 2.737376 GGAACACGTCGCTGTCCC 60.737 66.667 0.00 0.00 0.00 4.46
2228 2611 3.103911 GAACACGTCGCTGTCCCG 61.104 66.667 0.00 0.00 0.00 5.14
2229 2612 3.836176 GAACACGTCGCTGTCCCGT 62.836 63.158 0.00 0.00 34.71 5.28
2230 2613 3.435030 AACACGTCGCTGTCCCGTT 62.435 57.895 0.00 0.00 31.46 4.44
2231 2614 3.403057 CACGTCGCTGTCCCGTTG 61.403 66.667 0.00 0.00 31.46 4.10
2232 2615 4.657824 ACGTCGCTGTCCCGTTGG 62.658 66.667 0.00 0.00 0.00 3.77
2233 2616 4.657824 CGTCGCTGTCCCGTTGGT 62.658 66.667 0.00 0.00 0.00 3.67
2234 2617 2.652530 GTCGCTGTCCCGTTGGTA 59.347 61.111 0.00 0.00 0.00 3.25
2235 2618 1.445582 GTCGCTGTCCCGTTGGTAG 60.446 63.158 0.00 0.00 0.00 3.18
2236 2619 2.125673 CGCTGTCCCGTTGGTAGG 60.126 66.667 0.00 0.00 0.00 3.18
2237 2620 2.436115 GCTGTCCCGTTGGTAGGC 60.436 66.667 0.00 0.00 0.00 3.93
2238 2621 3.065306 CTGTCCCGTTGGTAGGCA 58.935 61.111 0.00 0.00 0.00 4.75
2239 2622 1.373435 CTGTCCCGTTGGTAGGCAA 59.627 57.895 0.00 0.00 0.00 4.52
2240 2623 0.250553 CTGTCCCGTTGGTAGGCAAA 60.251 55.000 0.00 0.00 0.00 3.68
2241 2624 0.535553 TGTCCCGTTGGTAGGCAAAC 60.536 55.000 0.00 0.00 0.00 2.93
2242 2625 1.073548 TCCCGTTGGTAGGCAAACC 59.926 57.895 2.29 2.29 40.19 3.27
2264 2647 4.521062 GCAGGCGAGCTCGTCCAT 62.521 66.667 34.89 20.90 46.54 3.41
2265 2648 3.120105 CAGGCGAGCTCGTCCATA 58.880 61.111 34.89 0.00 46.54 2.74
2266 2649 1.299468 CAGGCGAGCTCGTCCATAC 60.299 63.158 34.89 21.29 46.54 2.39
2267 2650 2.027751 GGCGAGCTCGTCCATACC 59.972 66.667 34.46 22.80 42.22 2.73
2268 2651 2.782222 GGCGAGCTCGTCCATACCA 61.782 63.158 34.46 0.00 42.22 3.25
2269 2652 1.364171 GCGAGCTCGTCCATACCAT 59.636 57.895 34.46 0.00 42.22 3.55
2270 2653 0.664767 GCGAGCTCGTCCATACCATC 60.665 60.000 34.46 12.23 42.22 3.51
2271 2654 0.386100 CGAGCTCGTCCATACCATCG 60.386 60.000 27.79 0.00 34.11 3.84
2272 2655 0.664767 GAGCTCGTCCATACCATCGC 60.665 60.000 0.00 0.00 0.00 4.58
2273 2656 1.664965 GCTCGTCCATACCATCGCC 60.665 63.158 0.00 0.00 0.00 5.54
2274 2657 1.371758 CTCGTCCATACCATCGCCG 60.372 63.158 0.00 0.00 0.00 6.46
2275 2658 3.036084 CGTCCATACCATCGCCGC 61.036 66.667 0.00 0.00 0.00 6.53
2276 2659 2.421739 GTCCATACCATCGCCGCT 59.578 61.111 0.00 0.00 0.00 5.52
2277 2660 1.664965 GTCCATACCATCGCCGCTC 60.665 63.158 0.00 0.00 0.00 5.03
2278 2661 1.832608 TCCATACCATCGCCGCTCT 60.833 57.895 0.00 0.00 0.00 4.09
2279 2662 1.373497 CCATACCATCGCCGCTCTC 60.373 63.158 0.00 0.00 0.00 3.20
2280 2663 1.730902 CATACCATCGCCGCTCTCG 60.731 63.158 0.00 0.00 0.00 4.04
2281 2664 2.194212 ATACCATCGCCGCTCTCGT 61.194 57.895 0.00 0.00 0.00 4.18
2282 2665 0.887836 ATACCATCGCCGCTCTCGTA 60.888 55.000 0.00 0.00 0.00 3.43
2283 2666 1.779025 TACCATCGCCGCTCTCGTAC 61.779 60.000 0.00 0.00 0.00 3.67
2284 2667 2.722548 CATCGCCGCTCTCGTACG 60.723 66.667 9.53 9.53 35.55 3.67
2285 2668 3.200593 ATCGCCGCTCTCGTACGT 61.201 61.111 16.05 0.00 35.67 3.57
2286 2669 3.450559 ATCGCCGCTCTCGTACGTG 62.451 63.158 16.05 13.38 35.67 4.49
2288 2671 3.807538 GCCGCTCTCGTACGTGGA 61.808 66.667 16.05 13.36 32.59 4.02
2289 2672 2.872557 CCGCTCTCGTACGTGGAA 59.127 61.111 16.05 0.00 32.59 3.53
2290 2673 1.226323 CCGCTCTCGTACGTGGAAG 60.226 63.158 16.05 8.29 32.59 3.46
2291 2674 1.642037 CCGCTCTCGTACGTGGAAGA 61.642 60.000 16.05 9.59 32.59 2.87
2292 2675 0.247735 CGCTCTCGTACGTGGAAGAG 60.248 60.000 21.25 21.25 0.00 2.85
2293 2676 0.523757 GCTCTCGTACGTGGAAGAGC 60.524 60.000 29.35 29.35 41.23 4.09
2294 2677 1.088306 CTCTCGTACGTGGAAGAGCT 58.912 55.000 16.05 0.00 0.00 4.09
2295 2678 2.277969 CTCTCGTACGTGGAAGAGCTA 58.722 52.381 16.05 0.00 0.00 3.32
2296 2679 2.676839 CTCTCGTACGTGGAAGAGCTAA 59.323 50.000 16.05 0.00 0.00 3.09
2297 2680 2.417933 TCTCGTACGTGGAAGAGCTAAC 59.582 50.000 16.05 0.00 0.00 2.34
2298 2681 2.419324 CTCGTACGTGGAAGAGCTAACT 59.581 50.000 16.05 0.00 0.00 2.24
2299 2682 3.599343 TCGTACGTGGAAGAGCTAACTA 58.401 45.455 16.05 0.00 0.00 2.24
2300 2683 4.002982 TCGTACGTGGAAGAGCTAACTAA 58.997 43.478 16.05 0.00 0.00 2.24
2301 2684 4.093998 TCGTACGTGGAAGAGCTAACTAAG 59.906 45.833 16.05 0.00 0.00 2.18
2302 2685 4.093998 CGTACGTGGAAGAGCTAACTAAGA 59.906 45.833 7.22 0.00 0.00 2.10
2303 2686 4.705337 ACGTGGAAGAGCTAACTAAGAG 57.295 45.455 0.00 0.00 0.00 2.85
2304 2687 4.080687 ACGTGGAAGAGCTAACTAAGAGT 58.919 43.478 0.00 0.00 0.00 3.24
2305 2688 4.082679 ACGTGGAAGAGCTAACTAAGAGTG 60.083 45.833 0.00 0.00 0.00 3.51
2306 2689 4.082679 CGTGGAAGAGCTAACTAAGAGTGT 60.083 45.833 0.00 0.00 0.00 3.55
2307 2690 5.164954 GTGGAAGAGCTAACTAAGAGTGTG 58.835 45.833 0.00 0.00 0.00 3.82
2308 2691 5.047943 GTGGAAGAGCTAACTAAGAGTGTGA 60.048 44.000 0.00 0.00 0.00 3.58
2309 2692 5.717178 TGGAAGAGCTAACTAAGAGTGTGAT 59.283 40.000 0.00 0.00 0.00 3.06
2310 2693 6.211584 TGGAAGAGCTAACTAAGAGTGTGATT 59.788 38.462 0.00 0.00 0.00 2.57
2311 2694 7.396339 TGGAAGAGCTAACTAAGAGTGTGATTA 59.604 37.037 0.00 0.00 0.00 1.75
2312 2695 8.251721 GGAAGAGCTAACTAAGAGTGTGATTAA 58.748 37.037 0.00 0.00 0.00 1.40
2313 2696 9.296400 GAAGAGCTAACTAAGAGTGTGATTAAG 57.704 37.037 0.00 0.00 0.00 1.85
2314 2697 7.262048 AGAGCTAACTAAGAGTGTGATTAAGC 58.738 38.462 0.00 0.00 0.00 3.09
2315 2698 6.037098 AGCTAACTAAGAGTGTGATTAAGCG 58.963 40.000 0.00 0.00 0.00 4.68
2316 2699 5.232414 GCTAACTAAGAGTGTGATTAAGCGG 59.768 44.000 0.00 0.00 0.00 5.52
2317 2700 5.401531 AACTAAGAGTGTGATTAAGCGGA 57.598 39.130 0.00 0.00 0.00 5.54
2318 2701 4.745649 ACTAAGAGTGTGATTAAGCGGAC 58.254 43.478 0.00 0.00 0.00 4.79
2319 2702 2.279582 AGAGTGTGATTAAGCGGACG 57.720 50.000 0.00 0.00 0.00 4.79
2320 2703 1.544691 AGAGTGTGATTAAGCGGACGT 59.455 47.619 0.00 0.00 0.00 4.34
2321 2704 2.751259 AGAGTGTGATTAAGCGGACGTA 59.249 45.455 0.00 0.00 0.00 3.57
2322 2705 3.106672 GAGTGTGATTAAGCGGACGTAG 58.893 50.000 0.00 0.00 0.00 3.51
2337 2720 2.532843 ACGTAGTGGTGGATAGTTGGT 58.467 47.619 0.00 0.00 42.51 3.67
2338 2721 2.901839 ACGTAGTGGTGGATAGTTGGTT 59.098 45.455 0.00 0.00 42.51 3.67
2339 2722 3.325716 ACGTAGTGGTGGATAGTTGGTTT 59.674 43.478 0.00 0.00 42.51 3.27
2340 2723 3.682858 CGTAGTGGTGGATAGTTGGTTTG 59.317 47.826 0.00 0.00 0.00 2.93
2341 2724 3.154827 AGTGGTGGATAGTTGGTTTGG 57.845 47.619 0.00 0.00 0.00 3.28
2342 2725 2.167662 GTGGTGGATAGTTGGTTTGGG 58.832 52.381 0.00 0.00 0.00 4.12
2343 2726 1.076350 TGGTGGATAGTTGGTTTGGGG 59.924 52.381 0.00 0.00 0.00 4.96
2344 2727 1.618616 GGTGGATAGTTGGTTTGGGGG 60.619 57.143 0.00 0.00 0.00 5.40
2345 2728 1.076513 GTGGATAGTTGGTTTGGGGGT 59.923 52.381 0.00 0.00 0.00 4.95
2346 2729 1.076350 TGGATAGTTGGTTTGGGGGTG 59.924 52.381 0.00 0.00 0.00 4.61
2347 2730 1.618616 GGATAGTTGGTTTGGGGGTGG 60.619 57.143 0.00 0.00 0.00 4.61
2348 2731 0.252057 ATAGTTGGTTTGGGGGTGGC 60.252 55.000 0.00 0.00 0.00 5.01
2349 2732 2.700407 TAGTTGGTTTGGGGGTGGCG 62.700 60.000 0.00 0.00 0.00 5.69
2350 2733 4.924187 TTGGTTTGGGGGTGGCGG 62.924 66.667 0.00 0.00 0.00 6.13
2361 2744 4.564110 GTGGCGGCCAGGGGATAC 62.564 72.222 24.58 4.67 32.34 2.24
2362 2745 4.815973 TGGCGGCCAGGGGATACT 62.816 66.667 19.77 0.00 0.00 2.12
2363 2746 3.489513 GGCGGCCAGGGGATACTT 61.490 66.667 15.62 0.00 0.00 2.24
2364 2747 2.595655 GCGGCCAGGGGATACTTT 59.404 61.111 2.24 0.00 0.00 2.66
2365 2748 1.076995 GCGGCCAGGGGATACTTTT 60.077 57.895 2.24 0.00 0.00 2.27
2366 2749 0.683179 GCGGCCAGGGGATACTTTTT 60.683 55.000 2.24 0.00 0.00 1.94
2389 2772 8.776061 TTTTATTAATTGGAGGGTAAGGATGG 57.224 34.615 0.00 0.00 0.00 3.51
2390 2773 4.806952 TTAATTGGAGGGTAAGGATGGG 57.193 45.455 0.00 0.00 0.00 4.00
2391 2774 0.853530 ATTGGAGGGTAAGGATGGGC 59.146 55.000 0.00 0.00 0.00 5.36
2392 2775 0.551377 TTGGAGGGTAAGGATGGGCA 60.551 55.000 0.00 0.00 0.00 5.36
2393 2776 0.551377 TGGAGGGTAAGGATGGGCAA 60.551 55.000 0.00 0.00 0.00 4.52
2394 2777 0.183731 GGAGGGTAAGGATGGGCAAG 59.816 60.000 0.00 0.00 0.00 4.01
2395 2778 1.213296 GAGGGTAAGGATGGGCAAGA 58.787 55.000 0.00 0.00 0.00 3.02
2396 2779 0.919710 AGGGTAAGGATGGGCAAGAC 59.080 55.000 0.00 0.00 0.00 3.01
2397 2780 0.463833 GGGTAAGGATGGGCAAGACG 60.464 60.000 0.00 0.00 0.00 4.18
2398 2781 1.095807 GGTAAGGATGGGCAAGACGC 61.096 60.000 0.00 0.00 41.28 5.19
2407 2790 3.961729 GCAAGACGCCGTTTAGGT 58.038 55.556 0.00 0.00 43.70 3.08
2408 2791 1.785951 GCAAGACGCCGTTTAGGTC 59.214 57.895 0.00 0.00 43.70 3.85
2409 2792 0.947180 GCAAGACGCCGTTTAGGTCA 60.947 55.000 0.00 0.00 43.70 4.02
2410 2793 1.504359 CAAGACGCCGTTTAGGTCAA 58.496 50.000 0.00 0.00 43.70 3.18
2411 2794 2.073816 CAAGACGCCGTTTAGGTCAAT 58.926 47.619 0.00 0.00 43.70 2.57
2412 2795 3.255725 CAAGACGCCGTTTAGGTCAATA 58.744 45.455 0.00 0.00 43.70 1.90
2413 2796 2.884827 AGACGCCGTTTAGGTCAATAC 58.115 47.619 0.00 0.00 43.70 1.89
2414 2797 1.585214 GACGCCGTTTAGGTCAATACG 59.415 52.381 0.00 0.00 43.70 3.06
2417 2800 2.304751 CCGTTTAGGTCAATACGGCT 57.695 50.000 0.00 0.00 45.75 5.52
2418 2801 2.199236 CCGTTTAGGTCAATACGGCTC 58.801 52.381 0.00 0.00 45.75 4.70
2419 2802 2.417651 CCGTTTAGGTCAATACGGCTCA 60.418 50.000 0.00 0.00 45.75 4.26
2420 2803 2.858344 CGTTTAGGTCAATACGGCTCAG 59.142 50.000 0.00 0.00 0.00 3.35
2421 2804 3.195661 GTTTAGGTCAATACGGCTCAGG 58.804 50.000 0.00 0.00 0.00 3.86
2422 2805 2.154567 TAGGTCAATACGGCTCAGGT 57.845 50.000 0.00 0.00 0.00 4.00
2423 2806 0.537188 AGGTCAATACGGCTCAGGTG 59.463 55.000 0.00 0.00 0.00 4.00
2424 2807 0.462047 GGTCAATACGGCTCAGGTGG 60.462 60.000 0.00 0.00 0.00 4.61
2425 2808 0.462047 GTCAATACGGCTCAGGTGGG 60.462 60.000 0.00 0.00 0.00 4.61
2426 2809 1.819632 CAATACGGCTCAGGTGGGC 60.820 63.158 0.00 0.00 0.00 5.36
2427 2810 1.995626 AATACGGCTCAGGTGGGCT 60.996 57.895 1.02 0.00 0.00 5.19
2428 2811 1.972660 AATACGGCTCAGGTGGGCTC 61.973 60.000 1.02 0.00 0.00 4.70
2429 2812 3.897681 TACGGCTCAGGTGGGCTCA 62.898 63.158 1.02 0.00 0.00 4.26
2430 2813 4.463879 CGGCTCAGGTGGGCTCAG 62.464 72.222 1.02 0.00 0.00 3.35
2431 2814 4.106925 GGCTCAGGTGGGCTCAGG 62.107 72.222 1.02 0.00 0.00 3.86
2432 2815 3.005539 GCTCAGGTGGGCTCAGGA 61.006 66.667 0.00 0.00 0.00 3.86
2433 2816 2.373707 GCTCAGGTGGGCTCAGGAT 61.374 63.158 0.00 0.00 0.00 3.24
2434 2817 1.525923 CTCAGGTGGGCTCAGGATG 59.474 63.158 0.00 0.00 37.54 3.51
2435 2818 1.229625 TCAGGTGGGCTCAGGATGT 60.230 57.895 0.00 0.00 37.40 3.06
2436 2819 0.042581 TCAGGTGGGCTCAGGATGTA 59.957 55.000 0.00 0.00 37.40 2.29
2437 2820 1.135094 CAGGTGGGCTCAGGATGTAT 58.865 55.000 0.00 0.00 37.40 2.29
2438 2821 1.071385 CAGGTGGGCTCAGGATGTATC 59.929 57.143 0.00 0.00 37.40 2.24
2447 2830 4.295119 GGATGTATCCCGCGCCGT 62.295 66.667 0.00 0.00 41.20 5.68
2448 2831 3.036084 GATGTATCCCGCGCCGTG 61.036 66.667 0.00 0.00 0.00 4.94
2449 2832 4.602259 ATGTATCCCGCGCCGTGG 62.602 66.667 10.35 10.35 0.00 4.94
2461 2844 3.691342 CCGTGGCTGTCTTCCCGA 61.691 66.667 0.00 0.00 0.00 5.14
2462 2845 2.125912 CGTGGCTGTCTTCCCGAG 60.126 66.667 0.00 0.00 0.00 4.63
2463 2846 2.435059 GTGGCTGTCTTCCCGAGC 60.435 66.667 0.00 0.00 0.00 5.03
2465 2848 4.821589 GGCTGTCTTCCCGAGCCG 62.822 72.222 0.00 0.00 42.84 5.52
2466 2849 4.070552 GCTGTCTTCCCGAGCCGT 62.071 66.667 0.00 0.00 0.00 5.68
2467 2850 2.125912 CTGTCTTCCCGAGCCGTG 60.126 66.667 0.00 0.00 0.00 4.94
2468 2851 4.373116 TGTCTTCCCGAGCCGTGC 62.373 66.667 0.00 0.00 0.00 5.34
2485 2868 2.789917 CGAGAGCATTGCTGGTGC 59.210 61.111 17.51 0.96 39.88 5.01
2486 2869 2.789917 GAGAGCATTGCTGGTGCG 59.210 61.111 17.51 0.00 46.86 5.34
2487 2870 2.749044 AGAGCATTGCTGGTGCGG 60.749 61.111 17.51 0.00 46.86 5.69
2488 2871 4.487412 GAGCATTGCTGGTGCGGC 62.487 66.667 17.51 0.00 46.86 6.53
2495 2878 4.602259 GCTGGTGCGGCCGCTATA 62.602 66.667 45.79 30.56 42.51 1.31
2496 2879 2.108157 CTGGTGCGGCCGCTATAA 59.892 61.111 45.79 27.40 42.51 0.98
2497 2880 1.522806 CTGGTGCGGCCGCTATAAA 60.523 57.895 45.79 26.98 42.51 1.40
2498 2881 0.884704 CTGGTGCGGCCGCTATAAAT 60.885 55.000 45.79 0.00 42.51 1.40
2499 2882 1.163420 TGGTGCGGCCGCTATAAATG 61.163 55.000 45.79 8.01 42.51 2.32
2500 2883 1.164041 GGTGCGGCCGCTATAAATGT 61.164 55.000 45.79 0.00 42.51 2.71
2501 2884 0.041312 GTGCGGCCGCTATAAATGTG 60.041 55.000 45.79 6.59 42.51 3.21
2502 2885 1.082104 GCGGCCGCTATAAATGTGC 60.082 57.895 41.71 9.20 38.26 4.57
2503 2886 1.507141 GCGGCCGCTATAAATGTGCT 61.507 55.000 41.71 0.00 38.26 4.40
2504 2887 0.512952 CGGCCGCTATAAATGTGCTC 59.487 55.000 14.67 0.00 0.00 4.26
2505 2888 1.593196 GGCCGCTATAAATGTGCTCA 58.407 50.000 0.00 0.00 0.00 4.26
2506 2889 2.154462 GGCCGCTATAAATGTGCTCAT 58.846 47.619 0.00 0.00 35.59 2.90
2507 2890 2.095567 GGCCGCTATAAATGTGCTCATG 60.096 50.000 1.29 0.00 34.19 3.07
2508 2891 2.095567 GCCGCTATAAATGTGCTCATGG 60.096 50.000 1.29 0.00 34.19 3.66
2509 2892 2.095567 CCGCTATAAATGTGCTCATGGC 60.096 50.000 1.29 0.00 42.22 4.40
2510 2893 2.095567 CGCTATAAATGTGCTCATGGCC 60.096 50.000 1.29 0.00 40.92 5.36
2511 2894 2.229784 GCTATAAATGTGCTCATGGCCC 59.770 50.000 0.00 0.00 40.92 5.80
2512 2895 2.457813 ATAAATGTGCTCATGGCCCA 57.542 45.000 0.00 0.00 40.92 5.36
2513 2896 1.473258 TAAATGTGCTCATGGCCCAC 58.527 50.000 0.00 0.26 40.92 4.61
2514 2897 1.259840 AAATGTGCTCATGGCCCACC 61.260 55.000 0.00 0.00 40.92 4.61
2515 2898 4.720902 TGTGCTCATGGCCCACCG 62.721 66.667 0.00 0.00 40.92 4.94
2516 2899 4.722700 GTGCTCATGGCCCACCGT 62.723 66.667 0.00 0.00 40.92 4.83
2517 2900 3.965258 TGCTCATGGCCCACCGTT 61.965 61.111 0.00 0.00 40.92 4.44
2518 2901 2.676471 GCTCATGGCCCACCGTTT 60.676 61.111 0.00 0.00 39.70 3.60
2519 2902 2.275380 GCTCATGGCCCACCGTTTT 61.275 57.895 0.00 0.00 39.70 2.43
2520 2903 1.815817 GCTCATGGCCCACCGTTTTT 61.816 55.000 0.00 0.00 39.70 1.94
2537 2920 0.863144 TTTTGGTTCGAGTACGCAGC 59.137 50.000 0.00 0.00 39.58 5.25
2538 2921 1.279527 TTTGGTTCGAGTACGCAGCG 61.280 55.000 14.82 14.82 36.14 5.18
2539 2922 2.879462 GGTTCGAGTACGCAGCGG 60.879 66.667 21.15 0.00 39.58 5.52
2540 2923 2.177531 GTTCGAGTACGCAGCGGA 59.822 61.111 21.15 8.06 39.58 5.54
2541 2924 1.443194 GTTCGAGTACGCAGCGGAA 60.443 57.895 21.15 9.56 39.58 4.30
2542 2925 0.801067 GTTCGAGTACGCAGCGGAAT 60.801 55.000 21.15 10.64 39.58 3.01
2543 2926 0.734309 TTCGAGTACGCAGCGGAATA 59.266 50.000 21.15 0.00 39.58 1.75
2544 2927 0.028505 TCGAGTACGCAGCGGAATAC 59.971 55.000 21.15 12.65 39.58 1.89
2545 2928 0.248336 CGAGTACGCAGCGGAATACA 60.248 55.000 21.15 0.00 0.00 2.29
2546 2929 1.478137 GAGTACGCAGCGGAATACAG 58.522 55.000 21.15 0.00 0.00 2.74
2547 2930 0.527817 AGTACGCAGCGGAATACAGC 60.528 55.000 21.15 0.00 37.48 4.40
2549 2932 0.174845 TACGCAGCGGAATACAGCTT 59.825 50.000 21.15 0.00 44.32 3.74
2550 2933 1.084370 ACGCAGCGGAATACAGCTTC 61.084 55.000 21.15 0.00 44.32 3.86
2551 2934 1.638467 GCAGCGGAATACAGCTTCG 59.362 57.895 0.00 0.00 44.32 3.79
2552 2935 0.806102 GCAGCGGAATACAGCTTCGA 60.806 55.000 0.00 0.00 44.32 3.71
2553 2936 1.640428 CAGCGGAATACAGCTTCGAA 58.360 50.000 0.00 0.00 44.32 3.71
2554 2937 2.205074 CAGCGGAATACAGCTTCGAAT 58.795 47.619 0.00 0.00 44.32 3.34
2555 2938 3.381045 CAGCGGAATACAGCTTCGAATA 58.619 45.455 0.00 0.00 44.32 1.75
2556 2939 3.182572 CAGCGGAATACAGCTTCGAATAC 59.817 47.826 0.00 0.00 44.32 1.89
2557 2940 3.068307 AGCGGAATACAGCTTCGAATACT 59.932 43.478 0.00 0.00 44.32 2.12
2558 2941 3.802685 GCGGAATACAGCTTCGAATACTT 59.197 43.478 0.00 0.00 34.59 2.24
2559 2942 4.085004 GCGGAATACAGCTTCGAATACTTC 60.085 45.833 0.00 0.00 34.59 3.01
2560 2943 5.282510 CGGAATACAGCTTCGAATACTTCT 58.717 41.667 0.00 0.00 0.00 2.85
2561 2944 5.174035 CGGAATACAGCTTCGAATACTTCTG 59.826 44.000 0.00 4.38 0.00 3.02
2562 2945 5.050702 GGAATACAGCTTCGAATACTTCTGC 60.051 44.000 0.00 0.00 0.00 4.26
2563 2946 3.319137 ACAGCTTCGAATACTTCTGCA 57.681 42.857 0.00 0.00 0.00 4.41
2564 2947 2.996621 ACAGCTTCGAATACTTCTGCAC 59.003 45.455 0.00 0.00 0.00 4.57
2565 2948 2.028523 CAGCTTCGAATACTTCTGCACG 59.971 50.000 0.00 0.00 0.00 5.34
2566 2949 1.267087 GCTTCGAATACTTCTGCACGC 60.267 52.381 0.00 0.00 0.00 5.34
2567 2950 1.992667 CTTCGAATACTTCTGCACGCA 59.007 47.619 0.00 0.00 0.00 5.24
2568 2951 1.346365 TCGAATACTTCTGCACGCAC 58.654 50.000 0.00 0.00 0.00 5.34
2569 2952 1.067693 CGAATACTTCTGCACGCACA 58.932 50.000 0.00 0.00 0.00 4.57
2570 2953 1.059692 CGAATACTTCTGCACGCACAG 59.940 52.381 0.00 0.00 39.12 3.66
2571 2954 2.337583 GAATACTTCTGCACGCACAGA 58.662 47.619 3.98 3.98 44.84 3.41
2572 2955 2.680312 ATACTTCTGCACGCACAGAT 57.320 45.000 8.62 0.00 45.75 2.90
2573 2956 1.996292 TACTTCTGCACGCACAGATC 58.004 50.000 8.62 0.00 45.75 2.75
2574 2957 0.671781 ACTTCTGCACGCACAGATCC 60.672 55.000 8.62 0.00 45.75 3.36
2575 2958 0.671472 CTTCTGCACGCACAGATCCA 60.671 55.000 8.62 0.00 45.75 3.41
2576 2959 0.671472 TTCTGCACGCACAGATCCAG 60.671 55.000 8.62 0.00 45.75 3.86
2577 2960 1.079612 CTGCACGCACAGATCCAGA 60.080 57.895 0.00 0.00 40.25 3.86
2578 2961 0.461516 CTGCACGCACAGATCCAGAT 60.462 55.000 0.00 0.00 40.25 2.90
2579 2962 0.741927 TGCACGCACAGATCCAGATG 60.742 55.000 0.00 0.00 0.00 2.90
2580 2963 2.012237 CACGCACAGATCCAGATGC 58.988 57.895 0.00 0.00 34.66 3.91
2581 2964 0.741927 CACGCACAGATCCAGATGCA 60.742 55.000 0.00 0.00 37.97 3.96
2582 2965 0.461516 ACGCACAGATCCAGATGCAG 60.462 55.000 0.00 4.58 37.97 4.41
2583 2966 1.773054 CGCACAGATCCAGATGCAGC 61.773 60.000 0.00 0.00 37.97 5.25
2584 2967 0.464013 GCACAGATCCAGATGCAGCT 60.464 55.000 0.00 0.00 38.00 4.24
2585 2968 1.300481 CACAGATCCAGATGCAGCTG 58.700 55.000 24.93 24.93 35.66 4.24
2586 2969 1.134491 CACAGATCCAGATGCAGCTGA 60.134 52.381 32.59 18.60 38.14 4.26
2587 2970 1.558294 ACAGATCCAGATGCAGCTGAA 59.442 47.619 32.59 14.88 38.14 3.02
2588 2971 2.026542 ACAGATCCAGATGCAGCTGAAA 60.027 45.455 32.59 20.05 38.14 2.69
2589 2972 2.614520 CAGATCCAGATGCAGCTGAAAG 59.385 50.000 32.59 16.39 38.14 2.62
2590 2973 1.948145 GATCCAGATGCAGCTGAAAGG 59.052 52.381 32.59 16.45 38.14 3.11
2592 2975 1.074405 TCCAGATGCAGCTGAAAGGTT 59.926 47.619 32.59 0.00 46.63 3.50
2593 2976 1.201647 CCAGATGCAGCTGAAAGGTTG 59.798 52.381 32.59 10.56 46.63 3.77
2594 2977 1.884579 CAGATGCAGCTGAAAGGTTGT 59.115 47.619 27.60 0.00 46.63 3.32
2595 2978 1.884579 AGATGCAGCTGAAAGGTTGTG 59.115 47.619 20.43 0.00 46.63 3.33
2596 2979 1.881973 GATGCAGCTGAAAGGTTGTGA 59.118 47.619 20.43 0.00 46.63 3.58
2597 2980 1.985473 TGCAGCTGAAAGGTTGTGAT 58.015 45.000 20.43 0.00 46.63 3.06
2598 2981 3.138884 TGCAGCTGAAAGGTTGTGATA 57.861 42.857 20.43 0.00 46.63 2.15
2599 2982 3.689347 TGCAGCTGAAAGGTTGTGATAT 58.311 40.909 20.43 0.00 46.63 1.63
2600 2983 3.691118 TGCAGCTGAAAGGTTGTGATATC 59.309 43.478 20.43 0.00 46.63 1.63
2601 2984 3.691118 GCAGCTGAAAGGTTGTGATATCA 59.309 43.478 20.43 0.00 46.63 2.15
2602 2985 4.201891 GCAGCTGAAAGGTTGTGATATCAG 60.202 45.833 20.43 0.00 46.63 2.90
2603 2986 4.334759 CAGCTGAAAGGTTGTGATATCAGG 59.665 45.833 8.42 0.00 46.63 3.86
2604 2987 4.018960 AGCTGAAAGGTTGTGATATCAGGT 60.019 41.667 5.42 0.00 46.63 4.00
2605 2988 4.333926 GCTGAAAGGTTGTGATATCAGGTC 59.666 45.833 5.42 0.00 35.87 3.85
2606 2989 4.843728 TGAAAGGTTGTGATATCAGGTCC 58.156 43.478 5.42 8.55 0.00 4.46
2607 2990 4.288366 TGAAAGGTTGTGATATCAGGTCCA 59.712 41.667 5.42 0.00 0.00 4.02
2608 2991 5.044919 TGAAAGGTTGTGATATCAGGTCCAT 60.045 40.000 5.42 0.00 0.00 3.41
2609 2992 4.696479 AGGTTGTGATATCAGGTCCATC 57.304 45.455 5.42 0.05 0.00 3.51
2610 2993 4.302067 AGGTTGTGATATCAGGTCCATCT 58.698 43.478 5.42 0.00 0.00 2.90
2611 2994 4.102210 AGGTTGTGATATCAGGTCCATCTG 59.898 45.833 5.42 0.00 36.17 2.90
2612 2995 4.101585 GGTTGTGATATCAGGTCCATCTGA 59.898 45.833 5.42 0.00 46.32 3.27
2613 2996 5.295950 GTTGTGATATCAGGTCCATCTGAG 58.704 45.833 5.42 0.00 45.60 3.35
2614 2997 3.323115 TGTGATATCAGGTCCATCTGAGC 59.677 47.826 5.42 0.00 45.60 4.26
2615 2998 3.323115 GTGATATCAGGTCCATCTGAGCA 59.677 47.826 5.42 0.00 45.60 4.26
2616 2999 3.323115 TGATATCAGGTCCATCTGAGCAC 59.677 47.826 0.00 0.00 45.60 4.40
2617 3000 0.463204 ATCAGGTCCATCTGAGCACG 59.537 55.000 0.00 0.00 45.60 5.34
2618 3001 1.153489 CAGGTCCATCTGAGCACGG 60.153 63.158 0.00 0.00 44.10 4.94
2619 3002 2.187946 GGTCCATCTGAGCACGGG 59.812 66.667 0.00 0.00 41.24 5.28
2620 3003 2.512515 GTCCATCTGAGCACGGGC 60.513 66.667 0.00 0.00 41.61 6.13
2635 3018 5.500645 GCACGGGCTTAGATTAGAATTTT 57.499 39.130 0.00 0.00 36.96 1.82
2636 3019 5.511571 GCACGGGCTTAGATTAGAATTTTC 58.488 41.667 0.00 0.00 36.96 2.29
2637 3020 5.738370 CACGGGCTTAGATTAGAATTTTCG 58.262 41.667 0.00 0.00 0.00 3.46
2638 3021 5.522460 CACGGGCTTAGATTAGAATTTTCGA 59.478 40.000 0.00 0.00 0.00 3.71
2639 3022 6.202954 CACGGGCTTAGATTAGAATTTTCGAT 59.797 38.462 0.00 0.00 0.00 3.59
2640 3023 7.384115 CACGGGCTTAGATTAGAATTTTCGATA 59.616 37.037 0.00 0.00 0.00 2.92
2641 3024 7.599245 ACGGGCTTAGATTAGAATTTTCGATAG 59.401 37.037 0.00 0.00 0.00 2.08
2642 3025 7.412020 CGGGCTTAGATTAGAATTTTCGATAGC 60.412 40.741 0.00 0.00 0.00 2.97
2643 3026 7.604545 GGGCTTAGATTAGAATTTTCGATAGCT 59.395 37.037 0.00 0.00 0.00 3.32
2644 3027 8.439286 GGCTTAGATTAGAATTTTCGATAGCTG 58.561 37.037 0.00 0.00 0.00 4.24
2645 3028 8.439286 GCTTAGATTAGAATTTTCGATAGCTGG 58.561 37.037 0.00 0.00 0.00 4.85
2646 3029 9.698309 CTTAGATTAGAATTTTCGATAGCTGGA 57.302 33.333 0.00 0.00 0.00 3.86
2648 3031 8.545229 AGATTAGAATTTTCGATAGCTGGATG 57.455 34.615 0.00 0.00 0.00 3.51
2649 3032 7.605691 AGATTAGAATTTTCGATAGCTGGATGG 59.394 37.037 0.00 0.00 0.00 3.51
2650 3033 3.817647 AGAATTTTCGATAGCTGGATGGC 59.182 43.478 0.00 0.00 0.00 4.40
2651 3034 2.708216 TTTTCGATAGCTGGATGGCA 57.292 45.000 0.00 0.00 34.17 4.92
2652 3035 2.936919 TTTCGATAGCTGGATGGCAT 57.063 45.000 0.00 0.00 34.17 4.40
2653 3036 4.350368 TTTTCGATAGCTGGATGGCATA 57.650 40.909 0.00 0.00 34.17 3.14
2654 3037 3.319137 TTCGATAGCTGGATGGCATAC 57.681 47.619 1.67 1.67 34.17 2.39
2655 3038 2.247358 TCGATAGCTGGATGGCATACA 58.753 47.619 12.76 12.76 34.17 2.29
2656 3039 2.833943 TCGATAGCTGGATGGCATACAT 59.166 45.455 13.90 1.42 44.18 2.29
2657 3040 2.934553 CGATAGCTGGATGGCATACATG 59.065 50.000 13.90 8.69 40.72 3.21
2669 3052 1.971962 GCATACATGCGCGAATAAAGC 59.028 47.619 12.10 3.46 44.67 3.51
2684 3067 8.722342 GCGAATAAAGCGGATAATTCAATAAA 57.278 30.769 0.00 0.00 0.00 1.40
2685 3068 9.341899 GCGAATAAAGCGGATAATTCAATAAAT 57.658 29.630 0.00 0.00 0.00 1.40
2720 3103 7.834068 TTCATTAGTACTGTGAAAGATCTGC 57.166 36.000 17.91 0.00 0.00 4.26
2721 3104 6.341316 TCATTAGTACTGTGAAAGATCTGCC 58.659 40.000 5.39 0.00 0.00 4.85
2722 3105 6.155221 TCATTAGTACTGTGAAAGATCTGCCT 59.845 38.462 5.39 0.00 0.00 4.75
2723 3106 4.899352 AGTACTGTGAAAGATCTGCCTT 57.101 40.909 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
225 257 4.959210 TCTGTTTCCATTTCCCAAACTTGA 59.041 37.500 0.00 0.00 32.28 3.02
276 308 6.018589 TCTGTCGCCTCTAATATCTGATTG 57.981 41.667 0.00 0.00 0.00 2.67
436 500 7.775093 TCTTATCCACTGTTCCAAATTCCTATG 59.225 37.037 0.00 0.00 0.00 2.23
701 966 6.372981 CAAGCTTTTGTTTGGCAAATATTCC 58.627 36.000 16.74 3.21 45.38 3.01
811 1160 5.185454 TGTTGGTATAGCAGAGGACAAATG 58.815 41.667 4.57 0.00 0.00 2.32
812 1161 5.435686 TGTTGGTATAGCAGAGGACAAAT 57.564 39.130 4.57 0.00 0.00 2.32
846 1196 4.128643 GAGCTTTGCTATCTTCATCTGCT 58.871 43.478 0.00 0.00 39.88 4.24
861 1211 3.274288 GTCCCAGTCCAATAGAGCTTTG 58.726 50.000 0.00 0.00 0.00 2.77
1005 1355 9.334693 GCTAATCCAAAATCTGATATTTTAGCG 57.665 33.333 0.00 0.00 30.85 4.26
1041 1391 5.673337 TTGTGTCAGTGTTATTTGAGCTC 57.327 39.130 6.82 6.82 0.00 4.09
1180 1533 1.002257 CAGGTGCCATGTAGCCACA 60.002 57.895 0.00 0.00 39.52 4.17
1213 1566 7.923888 ACATCCGATTTGATAGAGAAAATGTG 58.076 34.615 0.00 0.00 0.00 3.21
1214 1567 9.784531 ATACATCCGATTTGATAGAGAAAATGT 57.215 29.630 0.00 0.00 0.00 2.71
1558 1929 8.774890 TTAGCATTGCAATTACATTCAACATT 57.225 26.923 9.83 0.00 0.00 2.71
1743 2115 7.388712 CACTACCGAACATCTAAATTAACACG 58.611 38.462 0.00 0.00 0.00 4.49
1918 2293 6.184580 ACTATCGATAGTTTGATCGCCTAG 57.815 41.667 28.45 6.41 46.62 3.02
1934 2309 4.276431 TGTGCGATACCATACAACTATCGA 59.724 41.667 9.81 0.00 41.06 3.59
1954 2331 2.038952 TCTGGATGGTGGAGAGTTTGTG 59.961 50.000 0.00 0.00 0.00 3.33
1957 2334 3.054802 GTGATCTGGATGGTGGAGAGTTT 60.055 47.826 0.00 0.00 0.00 2.66
1977 2354 5.238650 ACATGGTTTAAAAAGAGAGGACGTG 59.761 40.000 0.00 0.00 0.00 4.49
1993 2370 5.324409 TGATTTCTCCAAGCTACATGGTTT 58.676 37.500 2.88 0.00 39.09 3.27
2010 2387 2.026262 TGGGAGTGCCTACCTTGATTTC 60.026 50.000 1.06 0.00 34.99 2.17
2071 2452 2.165030 TCGGAGATGGTTCGGTTTCTAC 59.835 50.000 0.00 0.00 0.00 2.59
2131 2513 2.525105 TATTTTTCCCTGCACCCCTC 57.475 50.000 0.00 0.00 0.00 4.30
2208 2591 2.022129 GGACAGCGACGTGTTCCAG 61.022 63.158 0.00 0.00 0.00 3.86
2209 2592 2.028484 GGACAGCGACGTGTTCCA 59.972 61.111 0.00 0.00 0.00 3.53
2210 2593 2.737376 GGGACAGCGACGTGTTCC 60.737 66.667 10.75 10.75 39.00 3.62
2211 2594 3.103911 CGGGACAGCGACGTGTTC 61.104 66.667 0.00 0.00 0.00 3.18
2212 2595 3.435030 AACGGGACAGCGACGTGTT 62.435 57.895 0.00 0.00 41.12 3.32
2213 2596 3.908081 AACGGGACAGCGACGTGT 61.908 61.111 0.00 0.00 41.12 4.49
2214 2597 3.403057 CAACGGGACAGCGACGTG 61.403 66.667 0.00 0.00 41.12 4.49
2215 2598 4.657824 CCAACGGGACAGCGACGT 62.658 66.667 0.00 0.00 43.43 4.34
2216 2599 3.271706 TACCAACGGGACAGCGACG 62.272 63.158 0.00 0.00 38.05 5.12
2217 2600 1.445582 CTACCAACGGGACAGCGAC 60.446 63.158 0.00 0.00 38.05 5.19
2218 2601 2.642254 CCTACCAACGGGACAGCGA 61.642 63.158 0.00 0.00 38.05 4.93
2219 2602 2.125673 CCTACCAACGGGACAGCG 60.126 66.667 0.00 0.00 38.05 5.18
2220 2603 2.436115 GCCTACCAACGGGACAGC 60.436 66.667 0.00 0.00 38.05 4.40
2221 2604 0.250553 TTTGCCTACCAACGGGACAG 60.251 55.000 0.00 0.00 38.05 3.51
2222 2605 0.535553 GTTTGCCTACCAACGGGACA 60.536 55.000 0.00 0.00 38.05 4.02
2223 2606 1.239296 GGTTTGCCTACCAACGGGAC 61.239 60.000 0.00 0.00 38.12 4.46
2224 2607 1.073548 GGTTTGCCTACCAACGGGA 59.926 57.895 0.00 0.00 38.12 5.14
2225 2608 1.074248 AGGTTTGCCTACCAACGGG 59.926 57.895 7.05 0.00 44.90 5.28
2226 2609 1.241315 CCAGGTTTGCCTACCAACGG 61.241 60.000 7.05 1.31 44.97 4.44
2227 2610 0.250553 TCCAGGTTTGCCTACCAACG 60.251 55.000 7.05 0.00 44.97 4.10
2228 2611 1.534729 CTCCAGGTTTGCCTACCAAC 58.465 55.000 7.05 0.00 44.97 3.77
2229 2612 0.251165 GCTCCAGGTTTGCCTACCAA 60.251 55.000 7.05 0.00 44.97 3.67
2230 2613 1.378762 GCTCCAGGTTTGCCTACCA 59.621 57.895 7.05 0.00 44.97 3.25
2231 2614 0.678048 CTGCTCCAGGTTTGCCTACC 60.678 60.000 0.00 0.00 44.97 3.18
2232 2615 0.678048 CCTGCTCCAGGTTTGCCTAC 60.678 60.000 3.09 0.00 45.82 3.18
2233 2616 1.685224 CCTGCTCCAGGTTTGCCTA 59.315 57.895 3.09 0.00 45.82 3.93
2234 2617 2.437897 CCTGCTCCAGGTTTGCCT 59.562 61.111 3.09 0.00 45.82 4.75
2247 2630 3.138930 TATGGACGAGCTCGCCTGC 62.139 63.158 33.81 24.27 44.43 4.85
2248 2631 1.299468 GTATGGACGAGCTCGCCTG 60.299 63.158 33.81 15.57 44.43 4.85
2249 2632 2.491022 GGTATGGACGAGCTCGCCT 61.491 63.158 33.81 25.45 44.43 5.52
2250 2633 2.027751 GGTATGGACGAGCTCGCC 59.972 66.667 34.83 32.25 44.43 5.54
2251 2634 0.664767 GATGGTATGGACGAGCTCGC 60.665 60.000 34.83 25.65 44.43 5.03
2252 2635 0.386100 CGATGGTATGGACGAGCTCG 60.386 60.000 33.45 33.45 46.33 5.03
2253 2636 0.664767 GCGATGGTATGGACGAGCTC 60.665 60.000 2.73 2.73 0.00 4.09
2254 2637 1.364171 GCGATGGTATGGACGAGCT 59.636 57.895 0.00 0.00 0.00 4.09
2255 2638 1.664965 GGCGATGGTATGGACGAGC 60.665 63.158 0.00 0.00 0.00 5.03
2256 2639 1.371758 CGGCGATGGTATGGACGAG 60.372 63.158 0.00 0.00 42.54 4.18
2257 2640 2.725641 CGGCGATGGTATGGACGA 59.274 61.111 0.00 0.00 42.54 4.20
2258 2641 3.036084 GCGGCGATGGTATGGACG 61.036 66.667 12.98 0.00 42.83 4.79
2259 2642 1.664965 GAGCGGCGATGGTATGGAC 60.665 63.158 12.98 0.00 0.00 4.02
2260 2643 1.806461 GAGAGCGGCGATGGTATGGA 61.806 60.000 12.98 0.00 0.00 3.41
2261 2644 1.373497 GAGAGCGGCGATGGTATGG 60.373 63.158 12.98 0.00 0.00 2.74
2262 2645 1.730902 CGAGAGCGGCGATGGTATG 60.731 63.158 12.98 0.00 0.00 2.39
2263 2646 0.887836 TACGAGAGCGGCGATGGTAT 60.888 55.000 12.98 0.00 43.17 2.73
2264 2647 1.524393 TACGAGAGCGGCGATGGTA 60.524 57.895 12.98 3.37 43.17 3.25
2265 2648 2.827190 TACGAGAGCGGCGATGGT 60.827 61.111 12.98 4.51 43.17 3.55
2266 2649 2.353607 GTACGAGAGCGGCGATGG 60.354 66.667 12.98 0.00 43.17 3.51
2267 2650 2.722548 CGTACGAGAGCGGCGATG 60.723 66.667 12.98 0.00 43.17 3.84
2268 2651 3.200593 ACGTACGAGAGCGGCGAT 61.201 61.111 24.41 2.76 43.17 4.58
2269 2652 4.156622 CACGTACGAGAGCGGCGA 62.157 66.667 24.41 0.00 43.17 5.54
2271 2654 3.332493 TTCCACGTACGAGAGCGGC 62.332 63.158 24.41 0.00 43.17 6.53
2272 2655 1.226323 CTTCCACGTACGAGAGCGG 60.226 63.158 24.41 13.35 43.17 5.52
2273 2656 0.247735 CTCTTCCACGTACGAGAGCG 60.248 60.000 24.41 12.33 44.79 5.03
2274 2657 3.607777 CTCTTCCACGTACGAGAGC 57.392 57.895 24.41 0.00 30.39 4.09
2275 2658 1.088306 AGCTCTTCCACGTACGAGAG 58.912 55.000 24.41 22.46 38.87 3.20
2276 2659 2.391616 TAGCTCTTCCACGTACGAGA 57.608 50.000 24.41 15.21 0.00 4.04
2277 2660 2.419324 AGTTAGCTCTTCCACGTACGAG 59.581 50.000 24.41 14.76 0.00 4.18
2278 2661 2.430465 AGTTAGCTCTTCCACGTACGA 58.570 47.619 24.41 0.00 0.00 3.43
2279 2662 2.915738 AGTTAGCTCTTCCACGTACG 57.084 50.000 15.01 15.01 0.00 3.67
2280 2663 5.123661 ACTCTTAGTTAGCTCTTCCACGTAC 59.876 44.000 0.00 0.00 0.00 3.67
2281 2664 5.123502 CACTCTTAGTTAGCTCTTCCACGTA 59.876 44.000 0.00 0.00 0.00 3.57
2282 2665 4.080687 ACTCTTAGTTAGCTCTTCCACGT 58.919 43.478 0.00 0.00 0.00 4.49
2283 2666 4.082679 ACACTCTTAGTTAGCTCTTCCACG 60.083 45.833 0.00 0.00 0.00 4.94
2284 2667 5.047943 TCACACTCTTAGTTAGCTCTTCCAC 60.048 44.000 0.00 0.00 0.00 4.02
2285 2668 5.077564 TCACACTCTTAGTTAGCTCTTCCA 58.922 41.667 0.00 0.00 0.00 3.53
2286 2669 5.646577 TCACACTCTTAGTTAGCTCTTCC 57.353 43.478 0.00 0.00 0.00 3.46
2287 2670 9.296400 CTTAATCACACTCTTAGTTAGCTCTTC 57.704 37.037 0.00 0.00 0.00 2.87
2288 2671 7.762159 GCTTAATCACACTCTTAGTTAGCTCTT 59.238 37.037 0.00 0.00 0.00 2.85
2289 2672 7.262048 GCTTAATCACACTCTTAGTTAGCTCT 58.738 38.462 0.00 0.00 0.00 4.09
2290 2673 6.197468 CGCTTAATCACACTCTTAGTTAGCTC 59.803 42.308 0.00 0.00 0.00 4.09
2291 2674 6.037098 CGCTTAATCACACTCTTAGTTAGCT 58.963 40.000 0.00 0.00 0.00 3.32
2292 2675 5.232414 CCGCTTAATCACACTCTTAGTTAGC 59.768 44.000 0.00 0.00 0.00 3.09
2293 2676 6.472808 GTCCGCTTAATCACACTCTTAGTTAG 59.527 42.308 0.00 0.00 0.00 2.34
2294 2677 6.327934 GTCCGCTTAATCACACTCTTAGTTA 58.672 40.000 0.00 0.00 0.00 2.24
2295 2678 5.169295 GTCCGCTTAATCACACTCTTAGTT 58.831 41.667 0.00 0.00 0.00 2.24
2296 2679 4.674623 CGTCCGCTTAATCACACTCTTAGT 60.675 45.833 0.00 0.00 0.00 2.24
2297 2680 3.791887 CGTCCGCTTAATCACACTCTTAG 59.208 47.826 0.00 0.00 0.00 2.18
2298 2681 3.192001 ACGTCCGCTTAATCACACTCTTA 59.808 43.478 0.00 0.00 0.00 2.10
2299 2682 2.029290 ACGTCCGCTTAATCACACTCTT 60.029 45.455 0.00 0.00 0.00 2.85
2300 2683 1.544691 ACGTCCGCTTAATCACACTCT 59.455 47.619 0.00 0.00 0.00 3.24
2301 2684 1.992170 ACGTCCGCTTAATCACACTC 58.008 50.000 0.00 0.00 0.00 3.51
2302 2685 2.490903 ACTACGTCCGCTTAATCACACT 59.509 45.455 0.00 0.00 0.00 3.55
2303 2686 2.597305 CACTACGTCCGCTTAATCACAC 59.403 50.000 0.00 0.00 0.00 3.82
2304 2687 2.416296 CCACTACGTCCGCTTAATCACA 60.416 50.000 0.00 0.00 0.00 3.58
2305 2688 2.190981 CCACTACGTCCGCTTAATCAC 58.809 52.381 0.00 0.00 0.00 3.06
2306 2689 1.820519 ACCACTACGTCCGCTTAATCA 59.179 47.619 0.00 0.00 0.00 2.57
2307 2690 2.190981 CACCACTACGTCCGCTTAATC 58.809 52.381 0.00 0.00 0.00 1.75
2308 2691 1.134907 CCACCACTACGTCCGCTTAAT 60.135 52.381 0.00 0.00 0.00 1.40
2309 2692 0.244450 CCACCACTACGTCCGCTTAA 59.756 55.000 0.00 0.00 0.00 1.85
2310 2693 0.608856 TCCACCACTACGTCCGCTTA 60.609 55.000 0.00 0.00 0.00 3.09
2311 2694 1.255667 ATCCACCACTACGTCCGCTT 61.256 55.000 0.00 0.00 0.00 4.68
2312 2695 0.394762 TATCCACCACTACGTCCGCT 60.395 55.000 0.00 0.00 0.00 5.52
2313 2696 0.030369 CTATCCACCACTACGTCCGC 59.970 60.000 0.00 0.00 0.00 5.54
2314 2697 1.386533 ACTATCCACCACTACGTCCG 58.613 55.000 0.00 0.00 0.00 4.79
2315 2698 2.159142 CCAACTATCCACCACTACGTCC 60.159 54.545 0.00 0.00 0.00 4.79
2316 2699 2.494870 ACCAACTATCCACCACTACGTC 59.505 50.000 0.00 0.00 0.00 4.34
2317 2700 2.532843 ACCAACTATCCACCACTACGT 58.467 47.619 0.00 0.00 0.00 3.57
2318 2701 3.604875 AACCAACTATCCACCACTACG 57.395 47.619 0.00 0.00 0.00 3.51
2319 2702 4.007659 CCAAACCAACTATCCACCACTAC 58.992 47.826 0.00 0.00 0.00 2.73
2320 2703 3.009695 CCCAAACCAACTATCCACCACTA 59.990 47.826 0.00 0.00 0.00 2.74
2321 2704 2.225017 CCCAAACCAACTATCCACCACT 60.225 50.000 0.00 0.00 0.00 4.00
2322 2705 2.167662 CCCAAACCAACTATCCACCAC 58.832 52.381 0.00 0.00 0.00 4.16
2323 2706 1.076350 CCCCAAACCAACTATCCACCA 59.924 52.381 0.00 0.00 0.00 4.17
2324 2707 1.618616 CCCCCAAACCAACTATCCACC 60.619 57.143 0.00 0.00 0.00 4.61
2325 2708 1.076513 ACCCCCAAACCAACTATCCAC 59.923 52.381 0.00 0.00 0.00 4.02
2326 2709 1.076350 CACCCCCAAACCAACTATCCA 59.924 52.381 0.00 0.00 0.00 3.41
2327 2710 1.618616 CCACCCCCAAACCAACTATCC 60.619 57.143 0.00 0.00 0.00 2.59
2328 2711 1.847328 CCACCCCCAAACCAACTATC 58.153 55.000 0.00 0.00 0.00 2.08
2329 2712 0.252057 GCCACCCCCAAACCAACTAT 60.252 55.000 0.00 0.00 0.00 2.12
2330 2713 1.154221 GCCACCCCCAAACCAACTA 59.846 57.895 0.00 0.00 0.00 2.24
2331 2714 2.123033 GCCACCCCCAAACCAACT 60.123 61.111 0.00 0.00 0.00 3.16
2332 2715 3.611674 CGCCACCCCCAAACCAAC 61.612 66.667 0.00 0.00 0.00 3.77
2333 2716 4.924187 CCGCCACCCCCAAACCAA 62.924 66.667 0.00 0.00 0.00 3.67
2344 2727 4.564110 GTATCCCCTGGCCGCCAC 62.564 72.222 8.43 0.00 0.00 5.01
2345 2728 4.815973 AGTATCCCCTGGCCGCCA 62.816 66.667 12.67 12.67 0.00 5.69
2346 2729 2.567664 AAAAGTATCCCCTGGCCGCC 62.568 60.000 1.04 1.04 0.00 6.13
2347 2730 0.683179 AAAAAGTATCCCCTGGCCGC 60.683 55.000 0.00 0.00 0.00 6.53
2348 2731 3.588742 AAAAAGTATCCCCTGGCCG 57.411 52.632 0.00 0.00 0.00 6.13
2363 2746 9.207868 CCATCCTTACCCTCCAATTAATAAAAA 57.792 33.333 0.00 0.00 0.00 1.94
2364 2747 7.787424 CCCATCCTTACCCTCCAATTAATAAAA 59.213 37.037 0.00 0.00 0.00 1.52
2365 2748 7.302184 CCCATCCTTACCCTCCAATTAATAAA 58.698 38.462 0.00 0.00 0.00 1.40
2366 2749 6.695656 GCCCATCCTTACCCTCCAATTAATAA 60.696 42.308 0.00 0.00 0.00 1.40
2367 2750 5.222254 GCCCATCCTTACCCTCCAATTAATA 60.222 44.000 0.00 0.00 0.00 0.98
2368 2751 4.449229 GCCCATCCTTACCCTCCAATTAAT 60.449 45.833 0.00 0.00 0.00 1.40
2369 2752 3.117284 GCCCATCCTTACCCTCCAATTAA 60.117 47.826 0.00 0.00 0.00 1.40
2370 2753 2.445525 GCCCATCCTTACCCTCCAATTA 59.554 50.000 0.00 0.00 0.00 1.40
2371 2754 1.217942 GCCCATCCTTACCCTCCAATT 59.782 52.381 0.00 0.00 0.00 2.32
2372 2755 0.853530 GCCCATCCTTACCCTCCAAT 59.146 55.000 0.00 0.00 0.00 3.16
2373 2756 0.551377 TGCCCATCCTTACCCTCCAA 60.551 55.000 0.00 0.00 0.00 3.53
2374 2757 0.551377 TTGCCCATCCTTACCCTCCA 60.551 55.000 0.00 0.00 0.00 3.86
2375 2758 0.183731 CTTGCCCATCCTTACCCTCC 59.816 60.000 0.00 0.00 0.00 4.30
2376 2759 1.134068 GTCTTGCCCATCCTTACCCTC 60.134 57.143 0.00 0.00 0.00 4.30
2377 2760 0.919710 GTCTTGCCCATCCTTACCCT 59.080 55.000 0.00 0.00 0.00 4.34
2378 2761 0.463833 CGTCTTGCCCATCCTTACCC 60.464 60.000 0.00 0.00 0.00 3.69
2379 2762 1.095807 GCGTCTTGCCCATCCTTACC 61.096 60.000 0.00 0.00 37.76 2.85
2380 2763 2.394604 GCGTCTTGCCCATCCTTAC 58.605 57.895 0.00 0.00 37.76 2.34
2381 2764 4.954933 GCGTCTTGCCCATCCTTA 57.045 55.556 0.00 0.00 37.76 2.69
2390 2773 0.947180 TGACCTAAACGGCGTCTTGC 60.947 55.000 15.17 1.61 45.38 4.01
2391 2774 1.504359 TTGACCTAAACGGCGTCTTG 58.496 50.000 15.17 0.00 35.61 3.02
2392 2775 2.467566 ATTGACCTAAACGGCGTCTT 57.532 45.000 15.17 12.55 35.61 3.01
2393 2776 2.733227 CGTATTGACCTAAACGGCGTCT 60.733 50.000 15.17 0.09 35.61 4.18
2394 2777 1.585214 CGTATTGACCTAAACGGCGTC 59.415 52.381 15.17 0.00 35.61 5.19
2395 2778 1.632422 CGTATTGACCTAAACGGCGT 58.368 50.000 6.77 6.77 35.61 5.68
2399 2782 2.858344 CTGAGCCGTATTGACCTAAACG 59.142 50.000 0.00 0.00 35.20 3.60
2400 2783 3.195661 CCTGAGCCGTATTGACCTAAAC 58.804 50.000 0.00 0.00 0.00 2.01
2401 2784 2.835764 ACCTGAGCCGTATTGACCTAAA 59.164 45.455 0.00 0.00 0.00 1.85
2402 2785 2.167693 CACCTGAGCCGTATTGACCTAA 59.832 50.000 0.00 0.00 0.00 2.69
2403 2786 1.754803 CACCTGAGCCGTATTGACCTA 59.245 52.381 0.00 0.00 0.00 3.08
2404 2787 0.537188 CACCTGAGCCGTATTGACCT 59.463 55.000 0.00 0.00 0.00 3.85
2405 2788 0.462047 CCACCTGAGCCGTATTGACC 60.462 60.000 0.00 0.00 0.00 4.02
2406 2789 0.462047 CCCACCTGAGCCGTATTGAC 60.462 60.000 0.00 0.00 0.00 3.18
2407 2790 1.904771 CCCACCTGAGCCGTATTGA 59.095 57.895 0.00 0.00 0.00 2.57
2408 2791 1.819632 GCCCACCTGAGCCGTATTG 60.820 63.158 0.00 0.00 0.00 1.90
2409 2792 1.972660 GAGCCCACCTGAGCCGTATT 61.973 60.000 0.00 0.00 0.00 1.89
2410 2793 2.365635 AGCCCACCTGAGCCGTAT 60.366 61.111 0.00 0.00 0.00 3.06
2411 2794 3.075005 GAGCCCACCTGAGCCGTA 61.075 66.667 0.00 0.00 0.00 4.02
2413 2796 4.463879 CTGAGCCCACCTGAGCCG 62.464 72.222 0.00 0.00 0.00 5.52
2414 2797 4.106925 CCTGAGCCCACCTGAGCC 62.107 72.222 0.00 0.00 0.00 4.70
2415 2798 2.373707 ATCCTGAGCCCACCTGAGC 61.374 63.158 0.00 0.00 0.00 4.26
2416 2799 1.270414 ACATCCTGAGCCCACCTGAG 61.270 60.000 0.00 0.00 0.00 3.35
2417 2800 0.042581 TACATCCTGAGCCCACCTGA 59.957 55.000 0.00 0.00 0.00 3.86
2418 2801 1.071385 GATACATCCTGAGCCCACCTG 59.929 57.143 0.00 0.00 0.00 4.00
2419 2802 1.428869 GATACATCCTGAGCCCACCT 58.571 55.000 0.00 0.00 0.00 4.00
2420 2803 0.398318 GGATACATCCTGAGCCCACC 59.602 60.000 0.72 0.00 43.73 4.61
2421 2804 0.398318 GGGATACATCCTGAGCCCAC 59.602 60.000 8.14 0.00 46.35 4.61
2422 2805 2.854253 GGGATACATCCTGAGCCCA 58.146 57.895 8.14 0.00 46.35 5.36
2429 2812 3.991051 CGGCGCGGGATACATCCT 61.991 66.667 8.83 0.00 46.35 3.24
2430 2813 4.295119 ACGGCGCGGGATACATCC 62.295 66.667 19.75 0.00 46.41 3.51
2431 2814 3.036084 CACGGCGCGGGATACATC 61.036 66.667 19.75 0.00 39.74 3.06
2432 2815 4.602259 CCACGGCGCGGGATACAT 62.602 66.667 19.75 0.00 39.74 2.29
2444 2827 3.649277 CTCGGGAAGACAGCCACGG 62.649 68.421 0.00 0.00 0.00 4.94
2445 2828 2.125912 CTCGGGAAGACAGCCACG 60.126 66.667 0.00 0.00 0.00 4.94
2446 2829 2.435059 GCTCGGGAAGACAGCCAC 60.435 66.667 0.00 0.00 0.00 5.01
2447 2830 3.706373 GGCTCGGGAAGACAGCCA 61.706 66.667 4.27 0.00 44.42 4.75
2448 2831 4.821589 CGGCTCGGGAAGACAGCC 62.822 72.222 0.00 0.00 41.84 4.85
2449 2832 4.070552 ACGGCTCGGGAAGACAGC 62.071 66.667 0.00 0.00 29.11 4.40
2450 2833 2.125912 CACGGCTCGGGAAGACAG 60.126 66.667 0.00 0.00 29.11 3.51
2451 2834 4.373116 GCACGGCTCGGGAAGACA 62.373 66.667 0.75 0.00 29.11 3.41
2467 2850 2.789917 CACCAGCAATGCTCTCGC 59.210 61.111 4.03 0.00 36.40 5.03
2468 2851 2.789917 GCACCAGCAATGCTCTCG 59.210 61.111 4.03 0.00 40.08 4.04
2469 2852 2.758089 CCGCACCAGCAATGCTCTC 61.758 63.158 4.03 0.00 41.10 3.20
2470 2853 2.749044 CCGCACCAGCAATGCTCT 60.749 61.111 4.03 0.00 41.10 4.09
2471 2854 4.487412 GCCGCACCAGCAATGCTC 62.487 66.667 4.03 0.00 41.10 4.26
2484 2867 1.082104 GCACATTTATAGCGGCCGC 60.082 57.895 42.34 42.34 42.33 6.53
2485 2868 0.512952 GAGCACATTTATAGCGGCCG 59.487 55.000 24.05 24.05 0.00 6.13
2486 2869 1.593196 TGAGCACATTTATAGCGGCC 58.407 50.000 0.00 0.00 0.00 6.13
2487 2870 2.095567 CCATGAGCACATTTATAGCGGC 60.096 50.000 0.00 0.00 34.15 6.53
2488 2871 2.095567 GCCATGAGCACATTTATAGCGG 60.096 50.000 0.00 0.00 42.97 5.52
2489 2872 2.095567 GGCCATGAGCACATTTATAGCG 60.096 50.000 0.00 0.00 46.50 4.26
2490 2873 3.565905 GGCCATGAGCACATTTATAGC 57.434 47.619 0.00 0.00 46.50 2.97
2500 2883 2.992817 AAAACGGTGGGCCATGAGCA 62.993 55.000 10.70 0.00 46.50 4.26
2501 2884 1.815817 AAAAACGGTGGGCCATGAGC 61.816 55.000 10.70 0.00 42.60 4.26
2502 2885 2.350738 AAAAACGGTGGGCCATGAG 58.649 52.632 10.70 6.92 34.09 2.90
2503 2886 4.609098 AAAAACGGTGGGCCATGA 57.391 50.000 10.70 0.00 34.09 3.07
2517 2900 1.262151 GCTGCGTACTCGAACCAAAAA 59.738 47.619 0.00 0.00 39.71 1.94
2518 2901 0.863144 GCTGCGTACTCGAACCAAAA 59.137 50.000 0.00 0.00 39.71 2.44
2519 2902 1.279527 CGCTGCGTACTCGAACCAAA 61.280 55.000 14.93 0.00 39.71 3.28
2520 2903 1.731613 CGCTGCGTACTCGAACCAA 60.732 57.895 14.93 0.00 39.71 3.67
2521 2904 2.126618 CGCTGCGTACTCGAACCA 60.127 61.111 14.93 0.00 39.71 3.67
2522 2905 2.807631 TTCCGCTGCGTACTCGAACC 62.808 60.000 21.59 0.00 39.71 3.62
2523 2906 0.801067 ATTCCGCTGCGTACTCGAAC 60.801 55.000 21.59 0.00 39.71 3.95
2524 2907 0.734309 TATTCCGCTGCGTACTCGAA 59.266 50.000 21.59 16.11 39.71 3.71
2525 2908 0.028505 GTATTCCGCTGCGTACTCGA 59.971 55.000 21.59 7.58 39.71 4.04
2526 2909 0.248336 TGTATTCCGCTGCGTACTCG 60.248 55.000 21.59 5.05 40.37 4.18
2527 2910 1.478137 CTGTATTCCGCTGCGTACTC 58.522 55.000 21.59 7.77 0.00 2.59
2528 2911 0.527817 GCTGTATTCCGCTGCGTACT 60.528 55.000 21.59 1.48 0.00 2.73
2529 2912 0.527817 AGCTGTATTCCGCTGCGTAC 60.528 55.000 21.59 16.48 34.69 3.67
2530 2913 0.174845 AAGCTGTATTCCGCTGCGTA 59.825 50.000 21.59 8.94 36.45 4.42
2531 2914 1.079127 AAGCTGTATTCCGCTGCGT 60.079 52.632 21.59 4.99 36.45 5.24
2532 2915 1.638467 GAAGCTGTATTCCGCTGCG 59.362 57.895 16.34 16.34 36.45 5.18
2533 2916 0.806102 TCGAAGCTGTATTCCGCTGC 60.806 55.000 0.00 0.00 36.45 5.25
2534 2917 1.640428 TTCGAAGCTGTATTCCGCTG 58.360 50.000 0.00 0.00 36.45 5.18
2535 2918 2.604046 ATTCGAAGCTGTATTCCGCT 57.396 45.000 3.35 0.00 38.30 5.52
2536 2919 3.381949 AGTATTCGAAGCTGTATTCCGC 58.618 45.455 3.35 0.00 0.00 5.54
2537 2920 5.562705 GAAGTATTCGAAGCTGTATTCCG 57.437 43.478 3.35 0.00 34.17 4.30
2551 2934 2.932614 ATCTGTGCGTGCAGAAGTATTC 59.067 45.455 13.38 0.00 46.93 1.75
2552 2935 2.455674 TCTGTGCGTGCAGAAGTATT 57.544 45.000 8.27 0.00 41.93 1.89
2553 2936 2.544685 GATCTGTGCGTGCAGAAGTAT 58.455 47.619 13.38 0.00 46.93 2.12
2554 2937 1.404181 GGATCTGTGCGTGCAGAAGTA 60.404 52.381 13.38 0.00 46.93 2.24
2555 2938 0.671781 GGATCTGTGCGTGCAGAAGT 60.672 55.000 13.38 0.90 46.93 3.01
2556 2939 0.671472 TGGATCTGTGCGTGCAGAAG 60.671 55.000 13.38 0.00 46.93 2.85
2557 2940 0.671472 CTGGATCTGTGCGTGCAGAA 60.671 55.000 13.38 0.00 46.93 3.02
2559 2942 0.461516 ATCTGGATCTGTGCGTGCAG 60.462 55.000 0.00 2.61 37.81 4.41
2560 2943 0.741927 CATCTGGATCTGTGCGTGCA 60.742 55.000 0.00 0.00 0.00 4.57
2561 2944 2.012237 CATCTGGATCTGTGCGTGC 58.988 57.895 0.00 0.00 0.00 5.34
2562 2945 0.741927 TGCATCTGGATCTGTGCGTG 60.742 55.000 0.00 0.00 40.34 5.34
2563 2946 0.461516 CTGCATCTGGATCTGTGCGT 60.462 55.000 0.00 0.00 40.34 5.24
2564 2947 1.773054 GCTGCATCTGGATCTGTGCG 61.773 60.000 0.00 0.00 40.34 5.34
2565 2948 0.464013 AGCTGCATCTGGATCTGTGC 60.464 55.000 1.02 0.00 38.05 4.57
2566 2949 1.134491 TCAGCTGCATCTGGATCTGTG 60.134 52.381 17.06 0.00 32.57 3.66
2567 2950 1.201424 TCAGCTGCATCTGGATCTGT 58.799 50.000 17.06 0.00 32.57 3.41
2568 2951 2.327200 TTCAGCTGCATCTGGATCTG 57.673 50.000 17.06 2.64 34.91 2.90
2569 2952 2.421670 CCTTTCAGCTGCATCTGGATCT 60.422 50.000 17.06 0.00 34.91 2.75
2570 2953 1.948145 CCTTTCAGCTGCATCTGGATC 59.052 52.381 17.06 0.00 34.91 3.36
2571 2954 1.284198 ACCTTTCAGCTGCATCTGGAT 59.716 47.619 17.06 0.00 34.91 3.41
2572 2955 0.694771 ACCTTTCAGCTGCATCTGGA 59.305 50.000 17.06 6.03 34.91 3.86
2573 2956 1.201647 CAACCTTTCAGCTGCATCTGG 59.798 52.381 17.06 8.97 34.91 3.86
2574 2957 1.884579 ACAACCTTTCAGCTGCATCTG 59.115 47.619 11.37 11.37 35.46 2.90
2575 2958 1.884579 CACAACCTTTCAGCTGCATCT 59.115 47.619 9.47 0.00 0.00 2.90
2576 2959 1.881973 TCACAACCTTTCAGCTGCATC 59.118 47.619 9.47 0.00 0.00 3.91
2577 2960 1.985473 TCACAACCTTTCAGCTGCAT 58.015 45.000 9.47 0.00 0.00 3.96
2578 2961 1.985473 ATCACAACCTTTCAGCTGCA 58.015 45.000 9.47 0.00 0.00 4.41
2579 2962 3.691118 TGATATCACAACCTTTCAGCTGC 59.309 43.478 9.47 0.00 0.00 5.25
2580 2963 4.334759 CCTGATATCACAACCTTTCAGCTG 59.665 45.833 7.63 7.63 31.45 4.24
2581 2964 4.018960 ACCTGATATCACAACCTTTCAGCT 60.019 41.667 0.00 0.00 31.45 4.24
2582 2965 4.265073 ACCTGATATCACAACCTTTCAGC 58.735 43.478 0.00 0.00 31.45 4.26
2583 2966 4.878397 GGACCTGATATCACAACCTTTCAG 59.122 45.833 0.00 0.00 0.00 3.02
2584 2967 4.288366 TGGACCTGATATCACAACCTTTCA 59.712 41.667 0.00 0.00 0.00 2.69
2585 2968 4.843728 TGGACCTGATATCACAACCTTTC 58.156 43.478 0.00 0.00 0.00 2.62
2586 2969 4.927267 TGGACCTGATATCACAACCTTT 57.073 40.909 0.00 0.00 0.00 3.11
2587 2970 4.723789 AGATGGACCTGATATCACAACCTT 59.276 41.667 0.00 3.79 0.00 3.50
2588 2971 4.102210 CAGATGGACCTGATATCACAACCT 59.898 45.833 0.00 0.00 36.29 3.50
2589 2972 4.101585 TCAGATGGACCTGATATCACAACC 59.898 45.833 0.00 5.92 38.18 3.77
2590 2973 5.282055 TCAGATGGACCTGATATCACAAC 57.718 43.478 0.00 0.00 38.18 3.32
2591 2974 4.202295 GCTCAGATGGACCTGATATCACAA 60.202 45.833 0.00 0.00 41.79 3.33
2592 2975 3.323115 GCTCAGATGGACCTGATATCACA 59.677 47.826 0.00 0.00 41.79 3.58
2593 2976 3.323115 TGCTCAGATGGACCTGATATCAC 59.677 47.826 0.00 0.00 41.79 3.06
2594 2977 3.323115 GTGCTCAGATGGACCTGATATCA 59.677 47.826 5.07 5.07 41.79 2.15
2595 2978 3.613671 CGTGCTCAGATGGACCTGATATC 60.614 52.174 0.00 0.00 41.79 1.63
2596 2979 2.298446 CGTGCTCAGATGGACCTGATAT 59.702 50.000 0.00 0.00 41.79 1.63
2597 2980 1.683385 CGTGCTCAGATGGACCTGATA 59.317 52.381 0.00 0.00 41.79 2.15
2598 2981 0.463204 CGTGCTCAGATGGACCTGAT 59.537 55.000 0.00 0.00 41.79 2.90
2599 2982 1.607801 CCGTGCTCAGATGGACCTGA 61.608 60.000 0.00 0.00 40.57 3.86
2600 2983 1.153489 CCGTGCTCAGATGGACCTG 60.153 63.158 0.00 0.00 35.55 4.00
2601 2984 2.362369 CCCGTGCTCAGATGGACCT 61.362 63.158 0.00 0.00 0.00 3.85
2602 2985 2.187946 CCCGTGCTCAGATGGACC 59.812 66.667 0.00 0.00 0.00 4.46
2603 2986 2.512515 GCCCGTGCTCAGATGGAC 60.513 66.667 0.00 0.00 33.53 4.02
2613 2996 5.500645 AAAATTCTAATCTAAGCCCGTGC 57.499 39.130 0.00 0.00 37.95 5.34
2614 2997 5.522460 TCGAAAATTCTAATCTAAGCCCGTG 59.478 40.000 0.00 0.00 0.00 4.94
2615 2998 5.667466 TCGAAAATTCTAATCTAAGCCCGT 58.333 37.500 0.00 0.00 0.00 5.28
2616 2999 6.787085 ATCGAAAATTCTAATCTAAGCCCG 57.213 37.500 0.00 0.00 0.00 6.13
2617 3000 7.604545 AGCTATCGAAAATTCTAATCTAAGCCC 59.395 37.037 0.00 0.00 0.00 5.19
2618 3001 8.439286 CAGCTATCGAAAATTCTAATCTAAGCC 58.561 37.037 0.00 0.00 0.00 4.35
2619 3002 8.439286 CCAGCTATCGAAAATTCTAATCTAAGC 58.561 37.037 0.00 0.00 0.00 3.09
2620 3003 9.698309 TCCAGCTATCGAAAATTCTAATCTAAG 57.302 33.333 0.00 0.00 0.00 2.18
2622 3005 9.645059 CATCCAGCTATCGAAAATTCTAATCTA 57.355 33.333 0.00 0.00 0.00 1.98
2623 3006 7.605691 CCATCCAGCTATCGAAAATTCTAATCT 59.394 37.037 0.00 0.00 0.00 2.40
2624 3007 7.625185 GCCATCCAGCTATCGAAAATTCTAATC 60.625 40.741 0.00 0.00 0.00 1.75
2625 3008 6.150140 GCCATCCAGCTATCGAAAATTCTAAT 59.850 38.462 0.00 0.00 0.00 1.73
2626 3009 5.470098 GCCATCCAGCTATCGAAAATTCTAA 59.530 40.000 0.00 0.00 0.00 2.10
2627 3010 4.997395 GCCATCCAGCTATCGAAAATTCTA 59.003 41.667 0.00 0.00 0.00 2.10
2628 3011 3.817647 GCCATCCAGCTATCGAAAATTCT 59.182 43.478 0.00 0.00 0.00 2.40
2629 3012 3.565482 TGCCATCCAGCTATCGAAAATTC 59.435 43.478 0.00 0.00 0.00 2.17
2630 3013 3.554934 TGCCATCCAGCTATCGAAAATT 58.445 40.909 0.00 0.00 0.00 1.82
2631 3014 3.213206 TGCCATCCAGCTATCGAAAAT 57.787 42.857 0.00 0.00 0.00 1.82
2632 3015 2.708216 TGCCATCCAGCTATCGAAAA 57.292 45.000 0.00 0.00 0.00 2.29
2633 3016 2.936919 ATGCCATCCAGCTATCGAAA 57.063 45.000 0.00 0.00 0.00 3.46
2634 3017 2.632512 TGTATGCCATCCAGCTATCGAA 59.367 45.455 0.00 0.00 0.00 3.71
2635 3018 2.247358 TGTATGCCATCCAGCTATCGA 58.753 47.619 0.00 0.00 0.00 3.59
2636 3019 2.749280 TGTATGCCATCCAGCTATCG 57.251 50.000 0.00 0.00 0.00 2.92
2650 3033 2.225086 CGCTTTATTCGCGCATGTATG 58.775 47.619 8.75 0.00 44.33 2.39
2651 3034 2.577300 CGCTTTATTCGCGCATGTAT 57.423 45.000 8.75 0.00 44.33 2.29
2653 3036 4.974468 CGCTTTATTCGCGCATGT 57.026 50.000 8.75 0.00 44.33 3.21
2659 3042 8.722342 TTTATTGAATTATCCGCTTTATTCGC 57.278 30.769 0.00 0.00 31.29 4.70
2694 3077 8.887717 GCAGATCTTTCACAGTACTAATGAAAT 58.112 33.333 24.24 15.94 40.54 2.17
2695 3078 7.334421 GGCAGATCTTTCACAGTACTAATGAAA 59.666 37.037 23.26 23.26 39.42 2.69
2696 3079 6.818644 GGCAGATCTTTCACAGTACTAATGAA 59.181 38.462 14.73 14.73 0.00 2.57
2697 3080 6.155221 AGGCAGATCTTTCACAGTACTAATGA 59.845 38.462 0.00 0.00 0.00 2.57
2698 3081 6.344500 AGGCAGATCTTTCACAGTACTAATG 58.656 40.000 0.00 0.00 0.00 1.90
2699 3082 6.552445 AGGCAGATCTTTCACAGTACTAAT 57.448 37.500 0.00 0.00 0.00 1.73
2700 3083 6.360370 AAGGCAGATCTTTCACAGTACTAA 57.640 37.500 0.00 0.00 0.00 2.24
2702 3085 4.899352 AAGGCAGATCTTTCACAGTACT 57.101 40.909 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.