Multiple sequence alignment - TraesCS3D01G039600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G039600 chr3D 100.000 2321 0 0 1 2321 15100052 15097732 0.000000e+00 4287.0
1 TraesCS3D01G039600 chr3D 78.941 793 107 43 8 768 15212675 15213439 3.470000e-133 484.0
2 TraesCS3D01G039600 chr3A 96.988 1859 30 9 1 1855 21291399 21293235 0.000000e+00 3099.0
3 TraesCS3D01G039600 chr3A 95.973 298 9 2 1844 2141 21293262 21293556 4.490000e-132 481.0
4 TraesCS3D01G039600 chr3A 97.154 246 7 0 1 246 21316175 21316420 1.280000e-112 416.0
5 TraesCS3D01G039600 chr3A 95.620 137 4 1 2185 2321 21293557 21293691 3.880000e-53 219.0
6 TraesCS3D01G039600 chr1D 80.521 806 96 34 3 770 46361881 46362663 1.560000e-156 562.0
7 TraesCS3D01G039600 chr1B 85.561 374 44 7 8 379 65703388 65703023 1.300000e-102 383.0
8 TraesCS3D01G039600 chr5A 77.536 276 34 16 1958 2229 509983194 509983445 8.650000e-30 141.0
9 TraesCS3D01G039600 chr6B 74.468 376 59 23 1956 2310 143756757 143757116 6.730000e-26 128.0
10 TraesCS3D01G039600 chr7D 74.906 267 51 9 1958 2222 626573486 626573738 8.770000e-20 108.0
11 TraesCS3D01G039600 chr7A 75.194 258 39 12 1974 2227 722183852 722183616 5.280000e-17 99.0
12 TraesCS3D01G039600 chr2D 77.273 154 23 7 2132 2283 580455394 580455537 1.910000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G039600 chr3D 15097732 15100052 2320 True 4287.000000 4287 100.000000 1 2321 1 chr3D.!!$R1 2320
1 TraesCS3D01G039600 chr3D 15212675 15213439 764 False 484.000000 484 78.941000 8 768 1 chr3D.!!$F1 760
2 TraesCS3D01G039600 chr3A 21291399 21293691 2292 False 1266.333333 3099 96.193667 1 2321 3 chr3A.!!$F2 2320
3 TraesCS3D01G039600 chr1D 46361881 46362663 782 False 562.000000 562 80.521000 3 770 1 chr1D.!!$F1 767

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
793 847 0.473694 TATCCCCGGCCATGACTCAT 60.474 55.0 2.24 0.0 0.0 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2154 2248 0.944386 CCACTGTTTTGGGTCAGTCG 59.056 55.0 0.0 0.0 42.05 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
289 292 1.080025 GGTGTACTGCCGTGGTCTC 60.080 63.158 0.00 0.00 0.00 3.36
520 564 5.065218 GTCTACCACTTGGCATTGTTGATAG 59.935 44.000 0.00 0.00 39.32 2.08
597 644 1.438651 GCATCTCGTTGTGGTTAGCA 58.561 50.000 0.00 0.00 0.00 3.49
657 704 6.480763 TGGGTGATTAGCTTACTTTCAATCA 58.519 36.000 0.00 0.00 34.21 2.57
686 735 0.933047 TATGACGCACGAGCATACGC 60.933 55.000 5.50 0.00 42.27 4.42
725 774 9.793245 GACAATATAACAATACAATAGTGCGAC 57.207 33.333 0.00 0.00 0.00 5.19
770 824 4.137543 AGAGAACAAAGACCATTCCACAC 58.862 43.478 0.00 0.00 0.00 3.82
789 843 1.674057 CTCTATCCCCGGCCATGAC 59.326 63.158 2.24 0.00 0.00 3.06
790 844 0.833834 CTCTATCCCCGGCCATGACT 60.834 60.000 2.24 0.00 0.00 3.41
791 845 0.832135 TCTATCCCCGGCCATGACTC 60.832 60.000 2.24 0.00 0.00 3.36
792 846 1.074850 TATCCCCGGCCATGACTCA 60.075 57.895 2.24 0.00 0.00 3.41
793 847 0.473694 TATCCCCGGCCATGACTCAT 60.474 55.000 2.24 0.00 0.00 2.90
794 848 0.473694 ATCCCCGGCCATGACTCATA 60.474 55.000 2.24 0.00 0.00 2.15
795 849 1.121407 TCCCCGGCCATGACTCATAG 61.121 60.000 2.24 0.00 0.00 2.23
796 850 1.121407 CCCCGGCCATGACTCATAGA 61.121 60.000 2.24 0.00 0.00 1.98
802 856 3.201290 GGCCATGACTCATAGACTTGTG 58.799 50.000 0.00 0.00 0.00 3.33
1005 1059 4.261801 GTTGGAAGTAGCTAGCCATGAAA 58.738 43.478 12.13 0.00 0.00 2.69
1157 1211 1.505353 GCAAGCTAAGGTGCTGCAG 59.495 57.895 10.11 10.11 43.24 4.41
1194 1248 1.220749 GGGCCTCTACACATGCGAA 59.779 57.895 0.84 0.00 0.00 4.70
1391 1445 1.589630 TGCTACGGTGCACAGTAGG 59.410 57.895 39.69 27.96 42.36 3.18
1429 1483 4.144297 TGGGATTGGATGATTTTCGATCC 58.856 43.478 0.00 0.00 38.98 3.36
1489 1543 8.735303 TGTTTATTGACACAATAAAATCGGTG 57.265 30.769 22.46 0.00 34.87 4.94
1490 1544 8.353684 TGTTTATTGACACAATAAAATCGGTGT 58.646 29.630 22.46 0.00 46.31 4.16
1491 1545 9.187455 GTTTATTGACACAATAAAATCGGTGTT 57.813 29.630 22.46 0.00 43.91 3.32
1494 1548 7.731882 TTGACACAATAAAATCGGTGTTAGA 57.268 32.000 0.00 0.00 43.91 2.10
1495 1549 7.915293 TGACACAATAAAATCGGTGTTAGAT 57.085 32.000 0.00 0.00 43.91 1.98
1775 1829 6.220726 ACATTGTTTTGCAAGTTCCTTAGT 57.779 33.333 0.00 0.00 40.86 2.24
1790 1844 5.086104 TCCTTAGTTGTGTCTGCTTATCC 57.914 43.478 0.00 0.00 0.00 2.59
1795 1849 5.028549 AGTTGTGTCTGCTTATCCTATGG 57.971 43.478 0.00 0.00 0.00 2.74
1817 1871 2.663826 CTGGCTAGAGGTCAGTTGAC 57.336 55.000 3.67 3.67 42.28 3.18
1841 1895 9.528018 GACTGAAAATAAAATTTGGTCAGTTGA 57.472 29.630 15.58 0.00 36.26 3.18
1842 1896 9.313118 ACTGAAAATAAAATTTGGTCAGTTGAC 57.687 29.630 11.34 3.67 44.04 3.18
1843 1897 9.533253 CTGAAAATAAAATTTGGTCAGTTGACT 57.467 29.630 11.67 0.00 44.20 3.41
1869 1963 4.090786 CCACAAGTTTGTTTCGGTCAAAAC 59.909 41.667 0.00 0.00 39.91 2.43
1910 2004 1.601759 AGGGCATGCACACTCACAC 60.602 57.895 24.51 0.00 0.00 3.82
1973 2067 8.562892 CAGACGAGAGCATTCCAATATAATTTT 58.437 33.333 0.00 0.00 0.00 1.82
2037 2131 5.009631 CACTCAACATCCCAAAAGTATCCA 58.990 41.667 0.00 0.00 0.00 3.41
2038 2132 5.653769 CACTCAACATCCCAAAAGTATCCAT 59.346 40.000 0.00 0.00 0.00 3.41
2141 2235 2.997485 AAAGACGAAATGGCTTCAGC 57.003 45.000 0.00 0.00 41.14 4.26
2142 2236 0.798776 AAGACGAAATGGCTTCAGCG 59.201 50.000 0.00 0.00 43.26 5.18
2143 2237 1.226128 GACGAAATGGCTTCAGCGC 60.226 57.895 0.00 0.00 43.26 5.92
2144 2238 1.911293 GACGAAATGGCTTCAGCGCA 61.911 55.000 11.47 0.00 43.26 6.09
2145 2239 1.209898 CGAAATGGCTTCAGCGCAA 59.790 52.632 11.47 0.00 43.26 4.85
2146 2240 0.179156 CGAAATGGCTTCAGCGCAAT 60.179 50.000 11.47 0.00 43.26 3.56
2147 2241 1.063912 CGAAATGGCTTCAGCGCAATA 59.936 47.619 11.47 0.00 43.26 1.90
2148 2242 2.477694 CGAAATGGCTTCAGCGCAATAA 60.478 45.455 11.47 0.00 43.26 1.40
2149 2243 2.857592 AATGGCTTCAGCGCAATAAG 57.142 45.000 11.47 11.10 43.26 1.73
2150 2244 1.027357 ATGGCTTCAGCGCAATAAGG 58.973 50.000 11.47 0.00 43.26 2.69
2151 2245 0.035534 TGGCTTCAGCGCAATAAGGA 60.036 50.000 11.47 0.00 43.26 3.36
2152 2246 1.094785 GGCTTCAGCGCAATAAGGAA 58.905 50.000 11.47 2.37 43.26 3.36
2153 2247 1.678101 GGCTTCAGCGCAATAAGGAAT 59.322 47.619 11.47 0.00 43.26 3.01
2154 2248 2.287248 GGCTTCAGCGCAATAAGGAATC 60.287 50.000 11.47 0.00 43.26 2.52
2155 2249 2.600792 GCTTCAGCGCAATAAGGAATCG 60.601 50.000 11.47 0.00 0.00 3.34
2156 2250 2.595124 TCAGCGCAATAAGGAATCGA 57.405 45.000 11.47 0.00 0.00 3.59
2157 2251 2.201732 TCAGCGCAATAAGGAATCGAC 58.798 47.619 11.47 0.00 0.00 4.20
2158 2252 2.159099 TCAGCGCAATAAGGAATCGACT 60.159 45.455 11.47 0.00 0.00 4.18
2159 2253 2.033407 CAGCGCAATAAGGAATCGACTG 60.033 50.000 11.47 0.00 0.00 3.51
2160 2254 2.159099 AGCGCAATAAGGAATCGACTGA 60.159 45.455 11.47 0.00 0.00 3.41
2161 2255 2.033662 GCGCAATAAGGAATCGACTGAC 60.034 50.000 0.30 0.00 0.00 3.51
2162 2256 2.540101 CGCAATAAGGAATCGACTGACC 59.460 50.000 0.00 0.00 0.00 4.02
2163 2257 2.872858 GCAATAAGGAATCGACTGACCC 59.127 50.000 0.00 0.00 0.00 4.46
2164 2258 3.681594 GCAATAAGGAATCGACTGACCCA 60.682 47.826 0.00 0.00 0.00 4.51
2165 2259 4.513442 CAATAAGGAATCGACTGACCCAA 58.487 43.478 0.00 0.00 0.00 4.12
2166 2260 4.837093 ATAAGGAATCGACTGACCCAAA 57.163 40.909 0.00 0.00 0.00 3.28
2167 2261 3.502123 AAGGAATCGACTGACCCAAAA 57.498 42.857 0.00 0.00 0.00 2.44
2168 2262 2.779506 AGGAATCGACTGACCCAAAAC 58.220 47.619 0.00 0.00 0.00 2.43
2169 2263 2.105821 AGGAATCGACTGACCCAAAACA 59.894 45.455 0.00 0.00 0.00 2.83
2170 2264 2.484264 GGAATCGACTGACCCAAAACAG 59.516 50.000 0.00 0.00 39.65 3.16
2172 2266 1.948104 TCGACTGACCCAAAACAGTG 58.052 50.000 0.00 0.00 45.54 3.66
2173 2267 0.944386 CGACTGACCCAAAACAGTGG 59.056 55.000 0.00 0.00 45.54 4.00
2174 2268 1.745827 CGACTGACCCAAAACAGTGGT 60.746 52.381 0.00 0.00 45.54 4.16
2175 2269 1.947456 GACTGACCCAAAACAGTGGTC 59.053 52.381 0.00 0.00 45.54 4.02
2178 2272 2.052782 GACCCAAAACAGTGGTCAGT 57.947 50.000 3.14 0.00 46.29 3.41
2179 2273 1.947456 GACCCAAAACAGTGGTCAGTC 59.053 52.381 3.14 0.00 46.29 3.51
2180 2274 1.283613 ACCCAAAACAGTGGTCAGTCA 59.716 47.619 0.00 0.00 36.90 3.41
2181 2275 2.291282 ACCCAAAACAGTGGTCAGTCAA 60.291 45.455 0.00 0.00 36.90 3.18
2182 2276 2.757868 CCCAAAACAGTGGTCAGTCAAA 59.242 45.455 0.00 0.00 36.90 2.69
2183 2277 3.194542 CCCAAAACAGTGGTCAGTCAAAA 59.805 43.478 0.00 0.00 36.90 2.44
2205 2299 0.958091 TTCGGCCCAAAACATGACTG 59.042 50.000 0.00 0.00 0.00 3.51
2208 2302 1.468520 CGGCCCAAAACATGACTGTAG 59.531 52.381 0.00 0.00 33.36 2.74
2218 2312 4.937201 ACATGACTGTAGACACAACAGA 57.063 40.909 10.02 0.00 45.89 3.41
2219 2313 5.276461 ACATGACTGTAGACACAACAGAA 57.724 39.130 10.02 0.00 45.89 3.02
2284 2378 9.844257 AATTGACTGACCCAAATTTATTTTCAA 57.156 25.926 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
289 292 2.029290 ACAAGCCTGTACTGTACGAAGG 60.029 50.000 16.20 16.20 32.54 3.46
520 564 4.898829 TGCACACAGACATATTATTGGC 57.101 40.909 0.00 0.00 0.00 4.52
597 644 6.458232 AGTAAGCTGATCGTAATCAAGACT 57.542 37.500 0.00 0.00 41.33 3.24
657 704 2.879026 TCGTGCGTCATAGATTAGCTCT 59.121 45.455 0.00 0.00 38.06 4.09
686 735 6.322491 TGTTATATTGTCCGATCGAGCTATG 58.678 40.000 18.66 0.00 0.00 2.23
725 774 7.036829 TCTTTCATGTATTGCCATGTGATTTG 58.963 34.615 0.00 0.00 42.29 2.32
770 824 1.536418 TCATGGCCGGGGATAGAGG 60.536 63.158 2.18 0.00 0.00 3.69
802 856 8.439286 TGTTTTTCTTGTTTGAATGCTTGTTAC 58.561 29.630 0.00 0.00 0.00 2.50
1157 1211 1.294659 CGAGGAGGAGTTGCAGTTGC 61.295 60.000 0.00 0.00 42.50 4.17
1194 1248 1.669265 TCGCATATCTTCACGACGTCT 59.331 47.619 14.70 0.00 0.00 4.18
1239 1293 3.248602 CCTTGACAAGGTTCTTCTTCACG 59.751 47.826 23.92 0.00 43.95 4.35
1429 1483 4.802039 ACTTACTGTTCCGCGTATAACATG 59.198 41.667 16.13 13.10 35.21 3.21
1483 1537 5.367945 AACCACCAATATCTAACACCGAT 57.632 39.130 0.00 0.00 0.00 4.18
1484 1538 4.829872 AACCACCAATATCTAACACCGA 57.170 40.909 0.00 0.00 0.00 4.69
1485 1539 8.092068 TGATATAACCACCAATATCTAACACCG 58.908 37.037 0.00 0.00 36.47 4.94
1486 1540 9.959721 ATGATATAACCACCAATATCTAACACC 57.040 33.333 0.00 0.00 36.47 4.16
1488 1542 9.958180 CCATGATATAACCACCAATATCTAACA 57.042 33.333 0.00 0.00 36.47 2.41
1489 1543 8.893727 GCCATGATATAACCACCAATATCTAAC 58.106 37.037 0.00 0.00 36.47 2.34
1490 1544 8.610369 TGCCATGATATAACCACCAATATCTAA 58.390 33.333 0.00 0.00 36.47 2.10
1491 1545 8.156822 TGCCATGATATAACCACCAATATCTA 57.843 34.615 0.00 0.00 36.47 1.98
1492 1546 7.031415 TGCCATGATATAACCACCAATATCT 57.969 36.000 0.00 0.00 36.47 1.98
1493 1547 7.701539 TTGCCATGATATAACCACCAATATC 57.298 36.000 0.00 0.00 36.19 1.63
1494 1548 8.117956 AGATTGCCATGATATAACCACCAATAT 58.882 33.333 0.00 0.00 0.00 1.28
1495 1549 7.469343 AGATTGCCATGATATAACCACCAATA 58.531 34.615 0.00 0.00 0.00 1.90
1559 1613 3.055819 ACAACATCGTGACTCAAGCCTAT 60.056 43.478 0.00 0.00 0.00 2.57
1775 1829 4.037222 TCCCATAGGATAAGCAGACACAA 58.963 43.478 0.00 0.00 37.19 3.33
1790 1844 2.243810 GACCTCTAGCCAGTCCCATAG 58.756 57.143 0.00 0.00 0.00 2.23
1795 1849 1.205893 CAACTGACCTCTAGCCAGTCC 59.794 57.143 0.00 0.00 39.93 3.85
1817 1871 9.533253 AGTCAACTGACCAAATTTTATTTTCAG 57.467 29.630 6.23 10.23 45.85 3.02
1841 1895 2.422127 CCGAAACAAACTTGTGGTCAGT 59.578 45.455 0.00 0.00 41.31 3.41
1842 1896 2.422127 ACCGAAACAAACTTGTGGTCAG 59.578 45.455 0.00 0.00 41.31 3.51
1843 1897 2.420722 GACCGAAACAAACTTGTGGTCA 59.579 45.455 18.65 0.00 44.64 4.02
1845 1899 2.438411 TGACCGAAACAAACTTGTGGT 58.562 42.857 3.44 3.44 41.31 4.16
1869 1963 7.063074 CCCTGAACACGTACAACTAATCTAAAG 59.937 40.741 0.00 0.00 0.00 1.85
1973 2067 9.320352 ACACGCAAATACTATATAACATGTGAA 57.680 29.630 0.00 0.00 0.00 3.18
2010 2104 5.304686 ACTTTTGGGATGTTGAGTGAGTA 57.695 39.130 0.00 0.00 0.00 2.59
2014 2108 5.009631 TGGATACTTTTGGGATGTTGAGTG 58.990 41.667 0.00 0.00 37.61 3.51
2064 2158 6.887626 TTCGTATACCTTTTTGGCTTTTCT 57.112 33.333 0.00 0.00 40.22 2.52
2105 2199 5.046591 TCGTCTTTTCATAGAGGGACAATGT 60.047 40.000 0.00 0.00 32.37 2.71
2141 2235 2.540101 GGTCAGTCGATTCCTTATTGCG 59.460 50.000 0.00 0.00 0.00 4.85
2142 2236 2.872858 GGGTCAGTCGATTCCTTATTGC 59.127 50.000 0.00 0.00 0.00 3.56
2143 2237 4.137116 TGGGTCAGTCGATTCCTTATTG 57.863 45.455 0.00 0.00 0.00 1.90
2144 2238 4.837093 TTGGGTCAGTCGATTCCTTATT 57.163 40.909 0.00 0.00 0.00 1.40
2145 2239 4.837093 TTTGGGTCAGTCGATTCCTTAT 57.163 40.909 0.00 0.00 0.00 1.73
2146 2240 4.202377 TGTTTTGGGTCAGTCGATTCCTTA 60.202 41.667 0.00 0.00 0.00 2.69
2147 2241 3.146847 GTTTTGGGTCAGTCGATTCCTT 58.853 45.455 0.00 0.00 0.00 3.36
2148 2242 2.105821 TGTTTTGGGTCAGTCGATTCCT 59.894 45.455 0.00 0.00 0.00 3.36
2149 2243 2.484264 CTGTTTTGGGTCAGTCGATTCC 59.516 50.000 0.00 0.00 0.00 3.01
2150 2244 3.058914 CACTGTTTTGGGTCAGTCGATTC 60.059 47.826 0.00 0.00 42.05 2.52
2151 2245 2.878406 CACTGTTTTGGGTCAGTCGATT 59.122 45.455 0.00 0.00 42.05 3.34
2152 2246 2.494059 CACTGTTTTGGGTCAGTCGAT 58.506 47.619 0.00 0.00 42.05 3.59
2153 2247 1.474320 CCACTGTTTTGGGTCAGTCGA 60.474 52.381 0.00 0.00 42.05 4.20
2154 2248 0.944386 CCACTGTTTTGGGTCAGTCG 59.056 55.000 0.00 0.00 42.05 4.18
2155 2249 2.052782 ACCACTGTTTTGGGTCAGTC 57.947 50.000 0.00 0.00 42.05 3.51
2160 2254 1.283613 TGACTGACCACTGTTTTGGGT 59.716 47.619 0.00 0.00 41.49 4.51
2161 2255 2.051334 TGACTGACCACTGTTTTGGG 57.949 50.000 0.00 0.00 41.49 4.12
2162 2256 4.448537 TTTTGACTGACCACTGTTTTGG 57.551 40.909 0.00 0.00 43.04 3.28
2163 2257 6.966435 AATTTTTGACTGACCACTGTTTTG 57.034 33.333 0.00 0.00 0.00 2.44
2164 2258 6.310224 CGAAATTTTTGACTGACCACTGTTTT 59.690 34.615 0.00 0.00 0.00 2.43
2165 2259 5.804979 CGAAATTTTTGACTGACCACTGTTT 59.195 36.000 0.00 0.00 0.00 2.83
2166 2260 5.339990 CGAAATTTTTGACTGACCACTGTT 58.660 37.500 0.00 0.00 0.00 3.16
2167 2261 4.202010 CCGAAATTTTTGACTGACCACTGT 60.202 41.667 0.00 0.00 0.00 3.55
2168 2262 4.290155 CCGAAATTTTTGACTGACCACTG 58.710 43.478 0.00 0.00 0.00 3.66
2169 2263 3.243401 GCCGAAATTTTTGACTGACCACT 60.243 43.478 0.00 0.00 0.00 4.00
2170 2264 3.049912 GCCGAAATTTTTGACTGACCAC 58.950 45.455 0.00 0.00 0.00 4.16
2171 2265 2.035321 GGCCGAAATTTTTGACTGACCA 59.965 45.455 0.00 0.00 0.00 4.02
2172 2266 2.609491 GGGCCGAAATTTTTGACTGACC 60.609 50.000 0.00 0.00 0.00 4.02
2173 2267 2.035321 TGGGCCGAAATTTTTGACTGAC 59.965 45.455 0.00 0.00 0.00 3.51
2174 2268 2.311463 TGGGCCGAAATTTTTGACTGA 58.689 42.857 0.00 0.00 0.00 3.41
2175 2269 2.810439 TGGGCCGAAATTTTTGACTG 57.190 45.000 0.00 0.00 0.00 3.51
2176 2270 3.828875 TTTGGGCCGAAATTTTTGACT 57.171 38.095 9.10 0.00 0.00 3.41
2177 2271 3.623510 TGTTTTGGGCCGAAATTTTTGAC 59.376 39.130 21.52 8.46 0.00 3.18
2178 2272 3.873910 TGTTTTGGGCCGAAATTTTTGA 58.126 36.364 21.52 0.00 0.00 2.69
2179 2273 4.274459 TCATGTTTTGGGCCGAAATTTTTG 59.726 37.500 21.52 15.45 0.00 2.44
2180 2274 4.274705 GTCATGTTTTGGGCCGAAATTTTT 59.725 37.500 21.52 5.03 0.00 1.94
2181 2275 3.812609 GTCATGTTTTGGGCCGAAATTTT 59.187 39.130 21.52 7.37 0.00 1.82
2182 2276 3.070878 AGTCATGTTTTGGGCCGAAATTT 59.929 39.130 21.52 9.75 0.00 1.82
2183 2277 2.632512 AGTCATGTTTTGGGCCGAAATT 59.367 40.909 21.52 10.09 0.00 1.82
2234 2328 2.839486 TTCAGCTCCAAGATTCGTGT 57.161 45.000 0.00 0.00 0.00 4.49
2284 2378 6.453092 ACACTTTAGCTACATGTAAGTCGTT 58.547 36.000 7.06 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.