Multiple sequence alignment - TraesCS3D01G039500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G039500 chr3D 100.000 6455 0 0 1 6455 15024785 15031239 0.000000e+00 11921.0
1 TraesCS3D01G039500 chr3D 85.380 2476 294 43 3126 5573 11818016 11815581 0.000000e+00 2505.0
2 TraesCS3D01G039500 chr3D 85.982 1705 210 15 981 2680 11819712 11818032 0.000000e+00 1797.0
3 TraesCS3D01G039500 chr3D 85.445 797 43 20 4906 5677 15125672 15126420 0.000000e+00 761.0
4 TraesCS3D01G039500 chr3D 83.705 583 82 4 2394 2973 11853699 11854271 7.360000e-149 538.0
5 TraesCS3D01G039500 chr3D 82.724 492 64 12 5775 6261 15126439 15126914 1.000000e-112 418.0
6 TraesCS3D01G039500 chr3D 97.727 132 2 1 6324 6455 15125232 15125362 6.510000e-55 226.0
7 TraesCS3D01G039500 chr3D 91.358 81 4 1 2057 2137 11854346 11854269 2.460000e-19 108.0
8 TraesCS3D01G039500 chr3B 86.852 4670 539 37 954 5599 17087730 17083112 0.000000e+00 5153.0
9 TraesCS3D01G039500 chr3B 86.962 813 90 10 2 803 706776766 706775959 0.000000e+00 900.0
10 TraesCS3D01G039500 chr3B 83.864 973 103 27 5313 6261 22167903 22168845 0.000000e+00 878.0
11 TraesCS3D01G039500 chr3B 84.021 582 82 3 2394 2973 17118240 17118812 3.400000e-152 549.0
12 TraesCS3D01G039500 chr3B 91.034 290 15 3 5041 5320 22167539 22167827 1.310000e-101 381.0
13 TraesCS3D01G039500 chr3B 95.455 132 6 0 6324 6455 22167010 22167141 1.820000e-50 211.0
14 TraesCS3D01G039500 chr3B 94.366 71 4 0 2057 2127 17118877 17118807 6.840000e-20 110.0
15 TraesCS3D01G039500 chr3B 90.323 62 6 0 4920 4981 22167452 22167513 1.490000e-11 82.4
16 TraesCS3D01G039500 chr3A 87.273 3143 361 22 2128 5258 25183232 25186347 0.000000e+00 3552.0
17 TraesCS3D01G039500 chr3A 82.609 713 101 12 953 1644 25153149 25153859 5.530000e-170 608.0
18 TraesCS3D01G039500 chr3A 90.952 420 38 0 1644 2063 25164914 25165333 3.380000e-157 566.0
19 TraesCS3D01G039500 chr3A 85.828 501 35 9 5238 5713 21274974 21274485 3.480000e-137 499.0
20 TraesCS3D01G039500 chr3A 82.927 492 62 14 5775 6261 21274481 21274007 2.150000e-114 424.0
21 TraesCS3D01G039500 chr3A 90.141 284 13 1 4906 5189 21275247 21274979 7.960000e-94 355.0
22 TraesCS3D01G039500 chr3A 79.056 339 37 16 5244 5578 25186363 25186671 1.100000e-47 202.0
23 TraesCS3D01G039500 chr3A 94.845 97 4 1 6324 6420 21275671 21275576 4.030000e-32 150.0
24 TraesCS3D01G039500 chr7A 90.550 836 52 3 1 809 543962062 543961227 0.000000e+00 1081.0
25 TraesCS3D01G039500 chr1D 90.568 827 55 2 1 804 410251441 410250615 0.000000e+00 1074.0
26 TraesCS3D01G039500 chr2D 90.470 829 54 10 2 805 75740256 75739428 0.000000e+00 1070.0
27 TraesCS3D01G039500 chr6D 90.640 812 65 11 1 805 397035571 397036378 0.000000e+00 1068.0
28 TraesCS3D01G039500 chr6D 86.182 275 35 3 533 805 7331740 7331467 1.760000e-75 294.0
29 TraesCS3D01G039500 chr6D 85.446 213 18 1 608 807 141141750 141141962 6.560000e-50 209.0
30 TraesCS3D01G039500 chr4D 90.580 828 45 3 1 805 480977644 480978461 0.000000e+00 1066.0
31 TraesCS3D01G039500 chr2A 89.390 820 63 6 1 797 635720567 635721385 0.000000e+00 1011.0
32 TraesCS3D01G039500 chr2A 88.235 816 80 11 2 805 495941679 495940868 0.000000e+00 961.0
33 TraesCS3D01G039500 chr2A 91.379 58 3 2 2076 2132 710356134 710356190 1.930000e-10 78.7
34 TraesCS3D01G039500 chr5B 87.624 808 90 8 5 805 454692587 454691783 0.000000e+00 929.0
35 TraesCS3D01G039500 chr1B 87.500 808 94 5 1 805 623456402 623455599 0.000000e+00 926.0
36 TraesCS3D01G039500 chr5D 87.317 820 78 9 3 805 15428831 15429641 0.000000e+00 915.0
37 TraesCS3D01G039500 chr5D 87.544 281 19 11 541 805 275980562 275980842 1.750000e-80 311.0
38 TraesCS3D01G039500 chr2B 90.581 637 43 7 5832 6453 74899985 74900619 0.000000e+00 828.0
39 TraesCS3D01G039500 chr2B 89.921 635 48 6 5832 6453 276675294 276674663 0.000000e+00 804.0
40 TraesCS3D01G039500 chr2B 77.632 152 29 5 1981 2130 686812031 686812179 3.210000e-13 87.9
41 TraesCS3D01G039500 chr2B 91.379 58 3 2 2076 2132 683753045 683753101 1.930000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G039500 chr3D 15024785 15031239 6454 False 11921.000000 11921 100.00000 1 6455 1 chr3D.!!$F2 6454
1 TraesCS3D01G039500 chr3D 11815581 11819712 4131 True 2151.000000 2505 85.68100 981 5573 2 chr3D.!!$R2 4592
2 TraesCS3D01G039500 chr3D 11853699 11854271 572 False 538.000000 538 83.70500 2394 2973 1 chr3D.!!$F1 579
3 TraesCS3D01G039500 chr3D 15125232 15126914 1682 False 468.333333 761 88.63200 4906 6455 3 chr3D.!!$F3 1549
4 TraesCS3D01G039500 chr3B 17083112 17087730 4618 True 5153.000000 5153 86.85200 954 5599 1 chr3B.!!$R1 4645
5 TraesCS3D01G039500 chr3B 706775959 706776766 807 True 900.000000 900 86.96200 2 803 1 chr3B.!!$R3 801
6 TraesCS3D01G039500 chr3B 17118240 17118812 572 False 549.000000 549 84.02100 2394 2973 1 chr3B.!!$F1 579
7 TraesCS3D01G039500 chr3B 22167010 22168845 1835 False 388.100000 878 90.16900 4920 6455 4 chr3B.!!$F2 1535
8 TraesCS3D01G039500 chr3A 25183232 25186671 3439 False 1877.000000 3552 83.16450 2128 5578 2 chr3A.!!$F3 3450
9 TraesCS3D01G039500 chr3A 25153149 25153859 710 False 608.000000 608 82.60900 953 1644 1 chr3A.!!$F1 691
10 TraesCS3D01G039500 chr3A 21274007 21275671 1664 True 357.000000 499 88.43525 4906 6420 4 chr3A.!!$R1 1514
11 TraesCS3D01G039500 chr7A 543961227 543962062 835 True 1081.000000 1081 90.55000 1 809 1 chr7A.!!$R1 808
12 TraesCS3D01G039500 chr1D 410250615 410251441 826 True 1074.000000 1074 90.56800 1 804 1 chr1D.!!$R1 803
13 TraesCS3D01G039500 chr2D 75739428 75740256 828 True 1070.000000 1070 90.47000 2 805 1 chr2D.!!$R1 803
14 TraesCS3D01G039500 chr6D 397035571 397036378 807 False 1068.000000 1068 90.64000 1 805 1 chr6D.!!$F2 804
15 TraesCS3D01G039500 chr4D 480977644 480978461 817 False 1066.000000 1066 90.58000 1 805 1 chr4D.!!$F1 804
16 TraesCS3D01G039500 chr2A 635720567 635721385 818 False 1011.000000 1011 89.39000 1 797 1 chr2A.!!$F1 796
17 TraesCS3D01G039500 chr2A 495940868 495941679 811 True 961.000000 961 88.23500 2 805 1 chr2A.!!$R1 803
18 TraesCS3D01G039500 chr5B 454691783 454692587 804 True 929.000000 929 87.62400 5 805 1 chr5B.!!$R1 800
19 TraesCS3D01G039500 chr1B 623455599 623456402 803 True 926.000000 926 87.50000 1 805 1 chr1B.!!$R1 804
20 TraesCS3D01G039500 chr5D 15428831 15429641 810 False 915.000000 915 87.31700 3 805 1 chr5D.!!$F1 802
21 TraesCS3D01G039500 chr2B 74899985 74900619 634 False 828.000000 828 90.58100 5832 6453 1 chr2B.!!$F1 621
22 TraesCS3D01G039500 chr2B 276674663 276675294 631 True 804.000000 804 89.92100 5832 6453 1 chr2B.!!$R1 621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
818 864 0.039911 AGGGTCAGTCGCTCTTACCT 59.960 55.0 9.46 0.00 39.61 3.08 F
1572 1638 0.108992 CAGCTTACGTTACCGAGCCA 60.109 55.0 0.00 0.00 35.24 4.75 F
2401 2467 0.532115 GGGTCACATGTTTGATGGGC 59.468 55.0 0.00 0.00 0.00 5.36 F
2867 2939 0.605319 TTGAGGTTGCCCACGCTAAG 60.605 55.0 0.00 0.00 35.36 2.18 F
4259 4334 0.106819 GCTGGGAATGTGAGCTCCAT 60.107 55.0 12.15 11.32 32.95 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1815 1881 0.316204 GCTTGCTTGCACCAGTTGAT 59.684 50.0 0.00 0.0 0.00 2.57 R
2949 3021 0.400213 TAACCTCTGGCAAGGGTGTG 59.600 55.0 14.17 0.0 41.04 3.82 R
3720 3795 0.030235 TGTTGACACGACGGAGACAG 59.970 55.0 0.00 0.0 0.00 3.51 R
4761 4839 0.034186 GGTCCTGCCCATGTGATGAA 60.034 55.0 0.00 0.0 0.00 2.57 R
5988 6243 0.761187 TCTCTGCTATGGACATGCCC 59.239 55.0 0.00 0.0 34.97 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 4.452733 GGGCGAGGAAGTGGACCG 62.453 72.222 0.00 0.00 0.00 4.79
605 613 7.349330 ACCCCTCTAGTACTAGTACTGATGTAA 59.651 40.741 35.52 19.41 45.25 2.41
729 775 4.879545 TCATCTATAGTTTTTGTTCGGCCC 59.120 41.667 0.00 0.00 0.00 5.80
754 800 1.666700 CGTTCTCGACCCACAAACAAA 59.333 47.619 0.00 0.00 39.71 2.83
805 851 2.235402 GGGTCGAGATTTTACAGGGTCA 59.765 50.000 0.00 0.00 0.00 4.02
809 855 3.119602 TCGAGATTTTACAGGGTCAGTCG 60.120 47.826 0.00 0.00 0.00 4.18
810 856 2.930682 GAGATTTTACAGGGTCAGTCGC 59.069 50.000 0.00 0.00 0.00 5.19
811 857 2.567615 AGATTTTACAGGGTCAGTCGCT 59.432 45.455 0.00 0.00 40.00 4.93
812 858 2.450609 TTTTACAGGGTCAGTCGCTC 57.549 50.000 0.00 0.00 37.22 5.03
813 859 1.629043 TTTACAGGGTCAGTCGCTCT 58.371 50.000 0.00 0.00 37.22 4.09
814 860 1.629043 TTACAGGGTCAGTCGCTCTT 58.371 50.000 0.00 0.00 37.22 2.85
815 861 2.502142 TACAGGGTCAGTCGCTCTTA 57.498 50.000 0.00 0.00 37.22 2.10
816 862 0.889306 ACAGGGTCAGTCGCTCTTAC 59.111 55.000 0.00 0.00 37.22 2.34
817 863 0.173708 CAGGGTCAGTCGCTCTTACC 59.826 60.000 3.34 3.34 39.12 2.85
818 864 0.039911 AGGGTCAGTCGCTCTTACCT 59.960 55.000 9.46 0.00 39.61 3.08
819 865 0.896226 GGGTCAGTCGCTCTTACCTT 59.104 55.000 9.46 0.00 39.61 3.50
820 866 1.275573 GGGTCAGTCGCTCTTACCTTT 59.724 52.381 9.46 0.00 39.61 3.11
821 867 2.608268 GGTCAGTCGCTCTTACCTTTC 58.392 52.381 4.37 0.00 37.44 2.62
822 868 2.608268 GTCAGTCGCTCTTACCTTTCC 58.392 52.381 0.00 0.00 0.00 3.13
823 869 2.029290 GTCAGTCGCTCTTACCTTTCCA 60.029 50.000 0.00 0.00 0.00 3.53
824 870 2.832129 TCAGTCGCTCTTACCTTTCCAT 59.168 45.455 0.00 0.00 0.00 3.41
825 871 3.260884 TCAGTCGCTCTTACCTTTCCATT 59.739 43.478 0.00 0.00 0.00 3.16
826 872 4.464951 TCAGTCGCTCTTACCTTTCCATTA 59.535 41.667 0.00 0.00 0.00 1.90
827 873 5.046878 TCAGTCGCTCTTACCTTTCCATTAA 60.047 40.000 0.00 0.00 0.00 1.40
828 874 5.817816 CAGTCGCTCTTACCTTTCCATTAAT 59.182 40.000 0.00 0.00 0.00 1.40
829 875 5.817816 AGTCGCTCTTACCTTTCCATTAATG 59.182 40.000 8.58 8.58 0.00 1.90
830 876 4.574828 TCGCTCTTACCTTTCCATTAATGC 59.425 41.667 10.11 0.00 0.00 3.56
831 877 4.335315 CGCTCTTACCTTTCCATTAATGCA 59.665 41.667 10.11 0.00 0.00 3.96
832 878 5.504665 CGCTCTTACCTTTCCATTAATGCAG 60.505 44.000 10.11 5.42 0.00 4.41
833 879 5.358160 GCTCTTACCTTTCCATTAATGCAGT 59.642 40.000 10.11 0.00 0.00 4.40
834 880 6.127619 GCTCTTACCTTTCCATTAATGCAGTT 60.128 38.462 10.11 0.00 0.00 3.16
835 881 7.391148 TCTTACCTTTCCATTAATGCAGTTC 57.609 36.000 10.11 0.00 0.00 3.01
836 882 6.377146 TCTTACCTTTCCATTAATGCAGTTCC 59.623 38.462 10.11 0.00 0.00 3.62
837 883 3.769300 ACCTTTCCATTAATGCAGTTCCC 59.231 43.478 10.11 0.00 0.00 3.97
838 884 3.132824 CCTTTCCATTAATGCAGTTCCCC 59.867 47.826 10.11 0.00 0.00 4.81
839 885 2.452600 TCCATTAATGCAGTTCCCCC 57.547 50.000 10.11 0.00 0.00 5.40
867 913 8.831715 AAAAATTAATGCAGTTCCTTCGAATT 57.168 26.923 0.00 0.00 0.00 2.17
868 914 8.831715 AAAATTAATGCAGTTCCTTCGAATTT 57.168 26.923 0.00 0.00 0.00 1.82
869 915 8.831715 AAATTAATGCAGTTCCTTCGAATTTT 57.168 26.923 0.00 0.00 0.00 1.82
870 916 8.466086 AATTAATGCAGTTCCTTCGAATTTTC 57.534 30.769 0.00 0.00 0.00 2.29
871 917 5.452078 AATGCAGTTCCTTCGAATTTTCA 57.548 34.783 0.00 0.00 0.00 2.69
872 918 4.223320 TGCAGTTCCTTCGAATTTTCAC 57.777 40.909 0.00 0.00 0.00 3.18
873 919 3.004315 TGCAGTTCCTTCGAATTTTCACC 59.996 43.478 0.00 0.00 0.00 4.02
874 920 3.611766 GCAGTTCCTTCGAATTTTCACCC 60.612 47.826 0.00 0.00 0.00 4.61
875 921 3.568007 CAGTTCCTTCGAATTTTCACCCA 59.432 43.478 0.00 0.00 0.00 4.51
876 922 3.821033 AGTTCCTTCGAATTTTCACCCAG 59.179 43.478 0.00 0.00 0.00 4.45
877 923 3.502123 TCCTTCGAATTTTCACCCAGT 57.498 42.857 0.00 0.00 0.00 4.00
878 924 4.627284 TCCTTCGAATTTTCACCCAGTA 57.373 40.909 0.00 0.00 0.00 2.74
879 925 4.320870 TCCTTCGAATTTTCACCCAGTAC 58.679 43.478 0.00 0.00 0.00 2.73
880 926 3.439129 CCTTCGAATTTTCACCCAGTACC 59.561 47.826 0.00 0.00 0.00 3.34
881 927 4.324267 CTTCGAATTTTCACCCAGTACCT 58.676 43.478 0.00 0.00 0.00 3.08
882 928 3.934068 TCGAATTTTCACCCAGTACCTC 58.066 45.455 0.00 0.00 0.00 3.85
883 929 3.325425 TCGAATTTTCACCCAGTACCTCA 59.675 43.478 0.00 0.00 0.00 3.86
884 930 3.435671 CGAATTTTCACCCAGTACCTCAC 59.564 47.826 0.00 0.00 0.00 3.51
885 931 4.394729 GAATTTTCACCCAGTACCTCACA 58.605 43.478 0.00 0.00 0.00 3.58
886 932 2.922740 TTTCACCCAGTACCTCACAC 57.077 50.000 0.00 0.00 0.00 3.82
887 933 1.796017 TTCACCCAGTACCTCACACA 58.204 50.000 0.00 0.00 0.00 3.72
888 934 1.045407 TCACCCAGTACCTCACACAC 58.955 55.000 0.00 0.00 0.00 3.82
889 935 1.048601 CACCCAGTACCTCACACACT 58.951 55.000 0.00 0.00 0.00 3.55
890 936 1.000955 CACCCAGTACCTCACACACTC 59.999 57.143 0.00 0.00 0.00 3.51
891 937 1.338107 CCCAGTACCTCACACACTCA 58.662 55.000 0.00 0.00 0.00 3.41
892 938 1.273606 CCCAGTACCTCACACACTCAG 59.726 57.143 0.00 0.00 0.00 3.35
893 939 2.239400 CCAGTACCTCACACACTCAGA 58.761 52.381 0.00 0.00 0.00 3.27
894 940 2.029828 CCAGTACCTCACACACTCAGAC 60.030 54.545 0.00 0.00 0.00 3.51
895 941 2.887783 CAGTACCTCACACACTCAGACT 59.112 50.000 0.00 0.00 0.00 3.24
896 942 4.072839 CAGTACCTCACACACTCAGACTA 58.927 47.826 0.00 0.00 0.00 2.59
897 943 4.155099 CAGTACCTCACACACTCAGACTAG 59.845 50.000 0.00 0.00 0.00 2.57
898 944 3.510531 ACCTCACACACTCAGACTAGA 57.489 47.619 0.00 0.00 0.00 2.43
899 945 3.150767 ACCTCACACACTCAGACTAGAC 58.849 50.000 0.00 0.00 0.00 2.59
900 946 2.160615 CCTCACACACTCAGACTAGACG 59.839 54.545 0.00 0.00 0.00 4.18
901 947 2.152016 TCACACACTCAGACTAGACGG 58.848 52.381 0.00 0.00 0.00 4.79
902 948 0.882474 ACACACTCAGACTAGACGGC 59.118 55.000 0.00 0.00 0.00 5.68
903 949 0.179187 CACACTCAGACTAGACGGCG 60.179 60.000 4.80 4.80 0.00 6.46
904 950 0.321387 ACACTCAGACTAGACGGCGA 60.321 55.000 16.62 0.00 0.00 5.54
905 951 0.803117 CACTCAGACTAGACGGCGAA 59.197 55.000 16.62 0.00 0.00 4.70
906 952 1.402259 CACTCAGACTAGACGGCGAAT 59.598 52.381 16.62 3.45 0.00 3.34
907 953 2.093106 ACTCAGACTAGACGGCGAATT 58.907 47.619 16.62 0.12 0.00 2.17
908 954 2.097791 ACTCAGACTAGACGGCGAATTC 59.902 50.000 16.62 0.00 0.00 2.17
909 955 1.063616 TCAGACTAGACGGCGAATTCG 59.936 52.381 23.34 23.34 43.27 3.34
910 956 0.381089 AGACTAGACGGCGAATTCGG 59.619 55.000 27.78 15.30 40.23 4.30
918 964 4.110493 GCGAATTCGGCTACTGCT 57.890 55.556 27.78 0.00 40.23 4.24
919 965 3.267900 GCGAATTCGGCTACTGCTA 57.732 52.632 27.78 0.00 40.23 3.49
920 966 0.853419 GCGAATTCGGCTACTGCTAC 59.147 55.000 27.78 4.62 40.23 3.58
921 967 1.801395 GCGAATTCGGCTACTGCTACA 60.801 52.381 27.78 0.00 40.23 2.74
922 968 2.120232 CGAATTCGGCTACTGCTACAG 58.880 52.381 20.16 0.00 39.59 2.74
923 969 2.223502 CGAATTCGGCTACTGCTACAGA 60.224 50.000 20.16 0.00 39.59 3.41
924 970 3.551046 CGAATTCGGCTACTGCTACAGAT 60.551 47.826 20.16 0.00 39.59 2.90
925 971 4.320275 CGAATTCGGCTACTGCTACAGATA 60.320 45.833 20.16 0.00 39.59 1.98
926 972 5.529791 GAATTCGGCTACTGCTACAGATAA 58.470 41.667 0.78 0.00 39.59 1.75
927 973 4.569761 TTCGGCTACTGCTACAGATAAG 57.430 45.455 0.78 0.00 39.59 1.73
928 974 2.293677 TCGGCTACTGCTACAGATAAGC 59.706 50.000 0.78 7.10 40.50 3.09
929 975 2.294791 CGGCTACTGCTACAGATAAGCT 59.705 50.000 15.45 0.00 40.73 3.74
930 976 3.610585 CGGCTACTGCTACAGATAAGCTC 60.611 52.174 15.45 8.86 40.73 4.09
931 977 3.572255 GGCTACTGCTACAGATAAGCTCT 59.428 47.826 15.45 0.00 40.73 4.09
932 978 4.545610 GCTACTGCTACAGATAAGCTCTG 58.454 47.826 0.78 0.14 45.33 3.35
933 979 4.558496 GCTACTGCTACAGATAAGCTCTGG 60.558 50.000 6.43 0.00 44.75 3.86
934 980 6.953982 GCTACTGCTACAGATAAGCTCTGGT 61.954 48.000 6.43 0.00 44.75 4.00
935 981 8.872417 GCTACTGCTACAGATAAGCTCTGGTG 62.872 50.000 6.43 0.48 44.75 4.17
939 985 2.975732 CAGATAAGCTCTGGTGCTCA 57.024 50.000 0.00 0.00 46.52 4.26
940 986 3.257469 CAGATAAGCTCTGGTGCTCAA 57.743 47.619 0.00 0.00 46.52 3.02
941 987 3.196463 CAGATAAGCTCTGGTGCTCAAG 58.804 50.000 0.00 0.00 46.52 3.02
942 988 1.939255 GATAAGCTCTGGTGCTCAAGC 59.061 52.381 0.00 0.00 43.24 4.01
943 989 0.979665 TAAGCTCTGGTGCTCAAGCT 59.020 50.000 3.32 4.36 43.24 3.74
944 990 0.321475 AAGCTCTGGTGCTCAAGCTC 60.321 55.000 3.32 0.00 43.24 4.09
945 991 1.193462 AGCTCTGGTGCTCAAGCTCT 61.193 55.000 3.32 0.00 39.34 4.09
946 992 1.020333 GCTCTGGTGCTCAAGCTCTG 61.020 60.000 3.32 1.02 42.66 3.35
947 993 1.004080 TCTGGTGCTCAAGCTCTGC 60.004 57.895 3.32 0.00 42.66 4.26
948 994 1.302271 CTGGTGCTCAAGCTCTGCA 60.302 57.895 3.32 4.46 42.66 4.41
950 996 2.858868 GTGCTCAAGCTCTGCACG 59.141 61.111 18.28 0.00 45.62 5.34
951 997 3.046087 TGCTCAAGCTCTGCACGC 61.046 61.111 3.32 0.00 42.66 5.34
956 1002 2.437359 AAGCTCTGCACGCCATCC 60.437 61.111 0.00 0.00 0.00 3.51
970 1016 1.944177 CCATCCCTACATCCTCGGAT 58.056 55.000 0.00 0.00 35.44 4.18
1041 1096 4.013702 TGGCTAGTCCAGGTCGTC 57.986 61.111 2.19 0.00 40.72 4.20
1161 1216 2.753043 CGCCTGCAAAGCCTCCAT 60.753 61.111 2.96 0.00 0.00 3.41
1239 1294 4.458829 TCCCTCCGCCGTCTCCAT 62.459 66.667 0.00 0.00 0.00 3.41
1240 1295 3.917760 CCCTCCGCCGTCTCCATC 61.918 72.222 0.00 0.00 0.00 3.51
1242 1297 3.209812 CTCCGCCGTCTCCATCGA 61.210 66.667 0.00 0.00 0.00 3.59
1249 1304 2.473760 CGTCTCCATCGACTCGCCT 61.474 63.158 0.00 0.00 0.00 5.52
1298 1353 1.866015 CTCTACCACCAGATCCACCA 58.134 55.000 0.00 0.00 0.00 4.17
1314 1369 2.187946 CACCAGCTCCATCCGGAC 59.812 66.667 6.12 0.00 35.91 4.79
1319 1374 4.593864 GCTCCATCCGGACGAGGC 62.594 72.222 24.71 16.04 35.91 4.70
1320 1375 2.835431 CTCCATCCGGACGAGGCT 60.835 66.667 18.71 0.00 35.91 4.58
1323 1378 1.828660 CCATCCGGACGAGGCTAGT 60.829 63.158 6.12 0.00 0.00 2.57
1339 1394 1.133407 CTAGTGACACTTCCTCCTCGC 59.867 57.143 14.50 0.00 0.00 5.03
1340 1395 0.540830 AGTGACACTTCCTCCTCGCT 60.541 55.000 1.07 0.00 0.00 4.93
1344 1399 1.216710 CACTTCCTCCTCGCTGTCC 59.783 63.158 0.00 0.00 0.00 4.02
1346 1401 3.708220 CTTCCTCCTCGCTGTCCGC 62.708 68.421 0.00 0.00 36.73 5.54
1383 1438 0.652592 CCAAGATTCGTGGCGCTAAG 59.347 55.000 7.64 3.07 0.00 2.18
1413 1473 1.489649 CTTGGTGGAGATGAGGATGCT 59.510 52.381 0.00 0.00 0.00 3.79
1418 1478 1.333177 GGAGATGAGGATGCTACCGT 58.667 55.000 0.00 0.00 34.73 4.83
1431 1497 1.859080 GCTACCGTCCGAATTGATGAC 59.141 52.381 0.00 0.00 0.00 3.06
1439 1505 4.026228 CGTCCGAATTGATGACATCTTGAG 60.026 45.833 16.25 4.68 0.00 3.02
1442 1508 3.302935 CGAATTGATGACATCTTGAGGCG 60.303 47.826 16.25 8.73 0.00 5.52
1443 1509 2.028420 TTGATGACATCTTGAGGCGG 57.972 50.000 16.25 0.00 0.00 6.13
1461 1527 1.731720 GGATGTGTGAAGCTGGAGAC 58.268 55.000 0.00 0.00 0.00 3.36
1467 1533 1.067565 TGTGAAGCTGGAGACGATGTC 60.068 52.381 0.00 0.00 0.00 3.06
1490 1556 3.204526 GTGAGGCAATCAAGATGGAGAG 58.795 50.000 0.00 0.00 40.43 3.20
1492 1558 2.172293 GAGGCAATCAAGATGGAGAGGT 59.828 50.000 0.00 0.00 0.00 3.85
1509 1575 0.814010 GGTTGGACGCTGTTGTCACT 60.814 55.000 4.93 0.00 40.72 3.41
1513 1579 1.436195 GGACGCTGTTGTCACTTGCA 61.436 55.000 4.93 0.00 40.72 4.08
1515 1581 0.744414 ACGCTGTTGTCACTTGCAGT 60.744 50.000 0.00 0.00 0.00 4.40
1523 1589 3.677648 CACTTGCAGTGGCCAGGC 61.678 66.667 19.91 19.91 42.35 4.85
1537 1603 0.184451 CCAGGCTGCTGGTATGGATT 59.816 55.000 9.56 0.00 39.56 3.01
1542 1608 0.464373 CTGCTGGTATGGATTGCCGT 60.464 55.000 0.00 0.00 36.79 5.68
1546 1612 1.152963 GGTATGGATTGCCGTGGCT 60.153 57.895 12.84 0.00 42.51 4.75
1547 1613 1.447317 GGTATGGATTGCCGTGGCTG 61.447 60.000 12.84 0.00 42.51 4.85
1572 1638 0.108992 CAGCTTACGTTACCGAGCCA 60.109 55.000 0.00 0.00 35.24 4.75
1596 1662 4.215908 AGATATTTGGGAGAGACGCTGTA 58.784 43.478 0.00 0.00 0.00 2.74
1604 1670 1.202582 GAGAGACGCTGTAAAGGAGCA 59.797 52.381 0.00 0.00 36.12 4.26
1623 1689 1.284982 ACATTGTGCAGACGCTCGTC 61.285 55.000 13.92 13.92 44.86 4.20
1645 1711 1.227943 GCTGAGGCTTGTGGTGTCA 60.228 57.895 0.00 0.00 35.22 3.58
1647 1713 0.947244 CTGAGGCTTGTGGTGTCAAC 59.053 55.000 0.00 0.00 0.00 3.18
1662 1728 2.503765 TGTCAACTTGTCAGTCCTTCCA 59.496 45.455 0.00 0.00 30.45 3.53
1671 1737 1.780309 TCAGTCCTTCCAATTGTGGGT 59.220 47.619 4.43 0.00 46.01 4.51
1677 1743 2.168313 CCTTCCAATTGTGGGTAATGGC 59.832 50.000 4.43 0.00 46.01 4.40
1701 1767 3.678548 GTGTTGGGAAAACTACTCTAGCG 59.321 47.826 0.00 0.00 0.00 4.26
1770 1836 1.040646 TATGGATCTCGGTGTCTGCC 58.959 55.000 0.00 0.00 0.00 4.85
1813 1879 1.812922 CGTGAGATGCTGGACTGCC 60.813 63.158 0.00 0.00 0.00 4.85
1815 1881 0.826715 GTGAGATGCTGGACTGCCTA 59.173 55.000 0.00 0.00 34.31 3.93
1826 1892 1.373570 GACTGCCTATCAACTGGTGC 58.626 55.000 0.00 0.00 0.00 5.01
1827 1893 0.692476 ACTGCCTATCAACTGGTGCA 59.308 50.000 0.00 0.00 0.00 4.57
1863 1929 7.454260 AGGAATCACAAACCTGAATAAACTC 57.546 36.000 0.00 0.00 32.39 3.01
1896 1962 3.985008 TGACGAGGATTTGAAGTCGAAA 58.015 40.909 0.00 0.00 36.30 3.46
1899 1965 2.984471 CGAGGATTTGAAGTCGAAACGA 59.016 45.455 0.00 0.00 34.28 3.85
1917 1983 4.618920 ACGACTACTCCTTGTTTTGGAT 57.381 40.909 0.00 0.00 32.56 3.41
1959 2025 4.711949 AGCCGCTGGGACAAGCTG 62.712 66.667 0.00 0.00 37.77 4.24
1980 2046 4.242475 TGTTAGCACCACTAAGATGTTCG 58.758 43.478 0.00 0.00 41.56 3.95
1995 2061 3.763097 TGTTCGATGAATGGCAATGTC 57.237 42.857 0.00 0.00 0.00 3.06
1999 2065 2.880268 TCGATGAATGGCAATGTCATCC 59.120 45.455 22.84 0.00 43.07 3.51
2010 2076 3.148412 CAATGTCATCCTGGTCACAACA 58.852 45.455 0.00 0.00 0.00 3.33
2019 2085 4.728772 TCCTGGTCACAACAAGAAATCAT 58.271 39.130 0.00 0.00 0.00 2.45
2022 2088 5.107109 TGGTCACAACAAGAAATCATTCG 57.893 39.130 0.00 0.00 40.63 3.34
2025 2091 5.507315 GGTCACAACAAGAAATCATTCGGTT 60.507 40.000 0.00 0.00 40.63 4.44
2100 2166 7.048629 TGATGACTTTTGGCTTATGTTCAAA 57.951 32.000 0.00 0.00 0.00 2.69
2140 2206 7.500227 GTGATGAGAAATATGAAGGACATCCAA 59.500 37.037 0.00 0.00 40.07 3.53
2142 2208 5.824624 TGAGAAATATGAAGGACATCCAAGC 59.175 40.000 0.00 0.00 40.07 4.01
2158 2224 3.589735 TCCAAGCTTACAGGTTATTGGGA 59.410 43.478 0.00 0.00 38.17 4.37
2161 2227 5.253330 CAAGCTTACAGGTTATTGGGAAGA 58.747 41.667 0.00 0.00 33.64 2.87
2211 2277 2.507339 TAGCTGCAAAAAGTGTTGGC 57.493 45.000 1.02 0.00 0.00 4.52
2214 2280 1.489881 CTGCAAAAAGTGTTGGCGCC 61.490 55.000 22.73 22.73 0.00 6.53
2222 2288 2.594303 TGTTGGCGCCCTGTTGAG 60.594 61.111 26.77 0.00 0.00 3.02
2254 2320 1.074775 GGTGGCCACTGGATGTCAA 59.925 57.895 33.91 0.00 0.00 3.18
2342 2408 1.021202 TTCACACACTTGCCTTTCCG 58.979 50.000 0.00 0.00 0.00 4.30
2379 2445 7.870445 TGTTTTTCTTATTGTGCACTATTTCCC 59.130 33.333 18.73 1.52 0.00 3.97
2401 2467 0.532115 GGGTCACATGTTTGATGGGC 59.468 55.000 0.00 0.00 0.00 5.36
2434 2500 3.876914 TCGCATTTGGATATCACAAGGTC 59.123 43.478 4.83 0.15 0.00 3.85
2464 2530 3.096852 TCTGGAAGTAAGCGAATGGAGA 58.903 45.455 0.00 0.00 33.76 3.71
2482 2548 7.881775 ATGGAGAAAACTGGTTATCATTACC 57.118 36.000 0.00 0.00 36.17 2.85
2483 2549 7.027874 TGGAGAAAACTGGTTATCATTACCT 57.972 36.000 0.00 0.00 36.60 3.08
2484 2550 6.884295 TGGAGAAAACTGGTTATCATTACCTG 59.116 38.462 0.00 0.00 39.65 4.00
2485 2551 7.110155 GGAGAAAACTGGTTATCATTACCTGA 58.890 38.462 6.71 0.00 37.84 3.86
2486 2552 7.610305 GGAGAAAACTGGTTATCATTACCTGAA 59.390 37.037 6.71 0.00 37.44 3.02
2505 2575 2.622064 ATGATTTAGTGGACCGAGGC 57.378 50.000 0.00 0.00 0.00 4.70
2516 2586 1.684450 GGACCGAGGCTTTTTCCAAAA 59.316 47.619 0.00 0.00 0.00 2.44
2544 2614 9.173021 AGTACATACTACTCTATGCATGATCTC 57.827 37.037 10.16 0.00 34.13 2.75
2577 2647 7.630082 ACCTGGCACATATAGTTTCTTTAGAA 58.370 34.615 0.00 0.00 38.20 2.10
2625 2695 2.338809 TCAGGAAGTGGAACAGGTCAT 58.661 47.619 0.00 0.00 41.80 3.06
2626 2696 2.038952 TCAGGAAGTGGAACAGGTCATG 59.961 50.000 0.00 0.00 41.80 3.07
2664 2734 7.763528 CACCTATCTATCAATACAAGATCTGCC 59.236 40.741 0.00 0.00 32.39 4.85
2677 2747 4.965200 AGATCTGCCTATAAGTGGAACC 57.035 45.455 0.00 0.00 37.80 3.62
2688 2758 2.983030 TGGAACCCACATGCGTGC 60.983 61.111 5.64 0.00 42.17 5.34
2690 2760 2.562912 GAACCCACATGCGTGCAG 59.437 61.111 5.64 0.00 42.17 4.41
2773 2845 5.469760 ACCAAAAATTTGAGCACCTTAATGC 59.530 36.000 7.44 0.00 40.55 3.56
2790 2862 8.903820 ACCTTAATGCTATTTGGAAAGTATGAC 58.096 33.333 0.00 0.00 0.00 3.06
2791 2863 8.902806 CCTTAATGCTATTTGGAAAGTATGACA 58.097 33.333 0.00 0.00 0.00 3.58
2795 2867 7.994425 TGCTATTTGGAAAGTATGACAAAGA 57.006 32.000 0.00 0.00 36.41 2.52
2829 2901 9.594478 GAAACTTTTTCCAAGGTATTCAAAGAA 57.406 29.630 0.00 0.00 0.00 2.52
2834 2906 3.751175 TCCAAGGTATTCAAAGAAGTGCG 59.249 43.478 0.00 0.00 0.00 5.34
2857 2929 1.355971 TCTTCGCGTATTGAGGTTGC 58.644 50.000 5.77 0.00 0.00 4.17
2861 2933 1.800681 GCGTATTGAGGTTGCCCAC 59.199 57.895 0.00 0.00 0.00 4.61
2862 2934 1.977594 GCGTATTGAGGTTGCCCACG 61.978 60.000 0.00 0.00 0.00 4.94
2867 2939 0.605319 TTGAGGTTGCCCACGCTAAG 60.605 55.000 0.00 0.00 35.36 2.18
2870 2942 0.688487 AGGTTGCCCACGCTAAGTTA 59.312 50.000 0.00 0.00 35.36 2.24
2871 2943 1.280998 AGGTTGCCCACGCTAAGTTAT 59.719 47.619 0.00 0.00 35.36 1.89
2886 2958 8.095792 ACGCTAAGTTATAGCATAGACTCTCTA 58.904 37.037 8.08 0.00 40.39 2.43
2946 3018 5.069251 CCTCGAACTAATATCCAGTGTTCCT 59.931 44.000 0.00 0.00 35.09 3.36
2973 3045 2.158608 ACCCTTGCCAGAGGTTATATGC 60.159 50.000 0.00 0.00 34.88 3.14
2975 3047 2.158623 CCTTGCCAGAGGTTATATGCCA 60.159 50.000 1.77 0.00 31.89 4.92
2985 3057 7.041098 CCAGAGGTTATATGCCAACTTTATCAC 60.041 40.741 1.77 0.00 0.00 3.06
3006 3078 4.826274 CCTCCAGGTTCTTGATGTAGAA 57.174 45.455 0.00 0.00 0.00 2.10
3009 3081 6.284459 CCTCCAGGTTCTTGATGTAGAATAC 58.716 44.000 0.00 0.00 43.42 1.89
3016 3088 5.023533 TCTTGATGTAGAATACTGGGTGC 57.976 43.478 0.00 0.00 43.54 5.01
3018 3090 4.137116 TGATGTAGAATACTGGGTGCAC 57.863 45.455 8.80 8.80 43.54 4.57
3025 3097 3.844211 AGAATACTGGGTGCACCTTTCTA 59.156 43.478 33.91 18.28 41.11 2.10
3039 3111 4.700213 CACCTTTCTACTTTACCACATGGG 59.300 45.833 2.32 0.00 44.81 4.00
3044 3116 5.614324 TCTACTTTACCACATGGGATGAG 57.386 43.478 0.00 0.00 41.15 2.90
3045 3117 5.030147 TCTACTTTACCACATGGGATGAGT 58.970 41.667 0.00 4.15 41.15 3.41
3052 3124 4.785301 ACCACATGGGATGAGTAATCTTG 58.215 43.478 0.00 0.00 41.15 3.02
3054 3126 5.428457 ACCACATGGGATGAGTAATCTTGTA 59.572 40.000 0.00 0.00 41.15 2.41
3057 3129 7.503566 CCACATGGGATGAGTAATCTTGTAAAT 59.496 37.037 0.00 0.00 40.01 1.40
3058 3130 8.562892 CACATGGGATGAGTAATCTTGTAAATC 58.437 37.037 0.00 0.00 35.43 2.17
3123 3195 2.224769 TGGAGTTGGGAGGCTAAAGTTG 60.225 50.000 0.00 0.00 0.00 3.16
3186 3258 7.497925 AGACTTTCAGATTGAACAGTTAACC 57.502 36.000 0.88 0.00 35.89 2.85
3257 3329 1.413808 GGGAAGCAGGGAGGAGTCTAT 60.414 57.143 0.00 0.00 0.00 1.98
3298 3370 7.599998 GGGACAAAATATACATCCATGATTTGC 59.400 37.037 0.00 0.00 0.00 3.68
3303 3375 8.640063 AAATATACATCCATGATTTGCTGCTA 57.360 30.769 0.00 0.00 0.00 3.49
3339 3411 5.670792 ACCGGTTTGATGTGAGTTCTATA 57.329 39.130 0.00 0.00 0.00 1.31
3349 3421 5.738619 TGTGAGTTCTATAACTGAGGCAA 57.261 39.130 0.00 0.00 46.09 4.52
3378 3450 2.019984 GAGGGTCTTCATCCACATTGC 58.980 52.381 0.00 0.00 0.00 3.56
3384 3456 0.611618 TTCATCCACATTGCGGGCTT 60.612 50.000 0.00 0.00 0.00 4.35
3426 3498 7.797617 ACTAGTTATGGAGGTATTTATTCCCCA 59.202 37.037 0.00 0.00 0.00 4.96
3450 3522 1.885887 TGGTTGAGCTCCAATTTTCCG 59.114 47.619 12.15 0.00 37.08 4.30
3499 3571 3.259123 GGAGAATTGCACAAAATGGGAGT 59.741 43.478 0.00 0.00 0.00 3.85
3511 3583 1.213296 ATGGGAGTTACTTCCGCCAT 58.787 50.000 5.07 0.00 38.17 4.40
3540 3612 5.691754 GCAATTTCCACTCCTTAAAACACTG 59.308 40.000 0.00 0.00 0.00 3.66
3552 3624 6.381420 TCCTTAAAACACTGGATTTGGTTCAA 59.619 34.615 0.00 0.00 0.00 2.69
3588 3660 5.186198 ACAGAAGTACCAATTATGTCCTGC 58.814 41.667 0.00 0.00 25.97 4.85
3591 3663 4.481368 AGTACCAATTATGTCCTGCGAA 57.519 40.909 0.00 0.00 0.00 4.70
3598 3670 2.620251 TATGTCCTGCGAAGATTGGG 57.380 50.000 0.00 0.00 0.00 4.12
3680 3752 5.450550 GCCCTAAACTAAGGTCATTTGCATC 60.451 44.000 0.00 0.00 34.56 3.91
3684 3756 4.032960 ACTAAGGTCATTTGCATCACCA 57.967 40.909 6.64 0.00 0.00 4.17
3689 3761 3.194116 AGGTCATTTGCATCACCACAATC 59.806 43.478 6.64 0.00 0.00 2.67
3716 3788 1.410153 CAGTGGCAAAGGCTTTCACTT 59.590 47.619 23.96 12.09 37.77 3.16
3717 3789 1.683385 AGTGGCAAAGGCTTTCACTTC 59.317 47.619 21.92 11.01 36.91 3.01
3720 3795 0.664466 GCAAAGGCTTTCACTTCGGC 60.664 55.000 10.08 4.97 36.96 5.54
3735 3810 2.126424 GGCTGTCTCCGTCGTGTC 60.126 66.667 0.00 0.00 0.00 3.67
3747 3822 3.057104 TCCGTCGTGTCAACATCTACAAT 60.057 43.478 0.00 0.00 0.00 2.71
3759 3834 5.171339 ACATCTACAATTGTCCTCAGCTT 57.829 39.130 15.85 0.00 0.00 3.74
3823 3898 5.600484 ACAATGTCTATTGAGGGAGTAGGAG 59.400 44.000 6.98 0.00 45.21 3.69
3844 3919 5.238214 GGAGCATTTCCTCACATCAGATTAC 59.762 44.000 0.00 0.00 43.16 1.89
3858 3933 3.371898 TCAGATTACTTGTGCGAGCATTG 59.628 43.478 0.00 0.00 0.00 2.82
3871 3946 1.891150 GAGCATTGCATATCAAGGGGG 59.109 52.381 11.91 0.00 38.22 5.40
3904 3979 7.655328 GTGTGAGAACCTTGGATGAGATATTAG 59.345 40.741 0.00 0.00 0.00 1.73
3905 3980 7.345653 TGTGAGAACCTTGGATGAGATATTAGT 59.654 37.037 0.00 0.00 0.00 2.24
3927 4002 2.928801 TAGTTTTGACTGGCTGCAGA 57.071 45.000 20.43 0.00 0.00 4.26
3930 4005 1.265365 GTTTTGACTGGCTGCAGACTC 59.735 52.381 22.80 11.79 0.00 3.36
3935 4010 2.031616 TGGCTGCAGACTCAGTGC 59.968 61.111 22.80 0.65 41.59 4.40
3936 4011 2.346739 GGCTGCAGACTCAGTGCT 59.653 61.111 20.43 0.00 41.78 4.40
3941 4016 1.000618 CTGCAGACTCAGTGCTCTTGA 59.999 52.381 8.42 0.00 41.78 3.02
3955 4030 8.632679 TCAGTGCTCTTGAGAAATTAACAATTT 58.367 29.630 1.30 0.00 43.43 1.82
3970 4045 5.712152 AACAATTTCGAGCTTTCTGGATT 57.288 34.783 0.00 0.00 0.00 3.01
3974 4049 5.964958 ATTTCGAGCTTTCTGGATTTTGA 57.035 34.783 0.00 0.00 0.00 2.69
3979 4054 7.251704 TCGAGCTTTCTGGATTTTGAATATC 57.748 36.000 0.00 0.00 0.00 1.63
3997 4072 6.612456 TGAATATCTGCCATGGGAAATTTTCT 59.388 34.615 18.70 0.00 0.00 2.52
3999 4074 3.509442 TCTGCCATGGGAAATTTTCTGT 58.491 40.909 15.13 0.00 0.00 3.41
4002 4077 3.258872 TGCCATGGGAAATTTTCTGTCAG 59.741 43.478 15.13 0.00 0.00 3.51
4035 4110 7.719633 TCCTTAGAAATGCTGGTAATTATGGAC 59.280 37.037 0.00 0.00 0.00 4.02
4051 4126 0.679505 GGACTGCCCAAGGTTTTTCC 59.320 55.000 0.00 0.00 34.14 3.13
4065 4140 4.229582 AGGTTTTTCCTGCCTGTATATCCA 59.770 41.667 0.00 0.00 46.19 3.41
4070 4145 5.698741 TTCCTGCCTGTATATCCATATGG 57.301 43.478 16.25 16.25 0.00 2.74
4075 4150 3.947834 GCCTGTATATCCATATGGCCAAC 59.052 47.826 17.58 12.11 35.13 3.77
4079 4154 3.634397 ATATCCATATGGCCAACGAGG 57.366 47.619 17.58 10.23 41.84 4.63
4080 4155 1.140312 ATCCATATGGCCAACGAGGT 58.860 50.000 17.58 0.00 40.61 3.85
4081 4156 0.180171 TCCATATGGCCAACGAGGTG 59.820 55.000 17.58 2.35 40.61 4.00
4082 4157 0.180171 CCATATGGCCAACGAGGTGA 59.820 55.000 10.96 0.00 40.61 4.02
4084 4159 2.364632 CATATGGCCAACGAGGTGAAA 58.635 47.619 10.96 0.00 40.61 2.69
4087 4162 0.759959 TGGCCAACGAGGTGAAACTA 59.240 50.000 0.61 0.00 40.61 2.24
4088 4163 1.349688 TGGCCAACGAGGTGAAACTAT 59.650 47.619 0.61 0.00 40.61 2.12
4089 4164 2.007608 GGCCAACGAGGTGAAACTATC 58.992 52.381 0.00 0.00 40.61 2.08
4090 4165 2.354805 GGCCAACGAGGTGAAACTATCT 60.355 50.000 0.00 0.00 40.61 1.98
4091 4166 3.335579 GCCAACGAGGTGAAACTATCTT 58.664 45.455 0.00 0.00 40.61 2.40
4092 4167 3.371285 GCCAACGAGGTGAAACTATCTTC 59.629 47.826 0.00 0.00 40.61 2.87
4093 4168 4.822026 CCAACGAGGTGAAACTATCTTCT 58.178 43.478 0.00 0.00 36.74 2.85
4094 4169 4.865365 CCAACGAGGTGAAACTATCTTCTC 59.135 45.833 0.00 0.00 36.74 2.87
4095 4170 5.470368 CAACGAGGTGAAACTATCTTCTCA 58.530 41.667 0.00 0.00 36.74 3.27
4096 4171 5.061920 ACGAGGTGAAACTATCTTCTCAC 57.938 43.478 0.00 0.00 37.95 3.51
4195 4270 7.092174 TGCCCCTCCTTTATTTCTTGACTATTA 60.092 37.037 0.00 0.00 0.00 0.98
4225 4300 3.837146 TCCAAAAATAGCATCCTTGGCAA 59.163 39.130 0.00 0.00 37.13 4.52
4240 4315 1.894466 TGGCAATTGGTGGTCTGATTG 59.106 47.619 7.72 0.00 33.71 2.67
4249 4324 1.747355 GTGGTCTGATTGCTGGGAATG 59.253 52.381 0.00 0.00 0.00 2.67
4251 4326 1.747355 GGTCTGATTGCTGGGAATGTG 59.253 52.381 0.00 0.00 0.00 3.21
4258 4333 1.300963 GCTGGGAATGTGAGCTCCA 59.699 57.895 12.15 9.32 32.95 3.86
4259 4334 0.106819 GCTGGGAATGTGAGCTCCAT 60.107 55.000 12.15 11.32 32.95 3.41
4267 4342 4.514441 GGAATGTGAGCTCCATAACATCTG 59.486 45.833 15.49 0.00 32.20 2.90
4276 4351 3.595173 TCCATAACATCTGACAACCACG 58.405 45.455 0.00 0.00 0.00 4.94
4286 4361 0.935196 GACAACCACGACTGGACAAC 59.065 55.000 0.00 0.00 40.55 3.32
4314 4389 3.118884 GCTTGTTGCAAATCCCATCTGAT 60.119 43.478 0.00 0.00 42.31 2.90
4326 4401 6.924913 ATCCCATCTGATCTCTTAAATCGA 57.075 37.500 0.00 0.00 0.00 3.59
4330 4405 6.644592 CCCATCTGATCTCTTAAATCGACTTC 59.355 42.308 0.00 0.00 0.00 3.01
4347 4422 6.036470 TCGACTTCAGTATTTGTGCATAGAG 58.964 40.000 0.00 0.00 0.00 2.43
4372 4447 1.826024 CCAGATCTGGTTCTCCGGG 59.174 63.158 30.55 4.58 45.53 5.73
4376 4451 2.317149 GATCTGGTTCTCCGGGGCAG 62.317 65.000 0.00 0.34 40.36 4.85
4381 4456 1.072505 GTTCTCCGGGGCAGTGAAA 59.927 57.895 0.00 0.00 0.00 2.69
4383 4458 1.415672 TTCTCCGGGGCAGTGAAAGT 61.416 55.000 0.00 0.00 0.00 2.66
4396 4471 5.234972 GGCAGTGAAAGTTTTCTTGGATTTG 59.765 40.000 0.00 0.00 40.37 2.32
4398 4473 6.237915 GCAGTGAAAGTTTTCTTGGATTTGTG 60.238 38.462 0.00 0.00 40.37 3.33
4416 4491 6.751514 TTTGTGTCACTCAAAACACTACAT 57.248 33.333 2.49 0.00 44.78 2.29
4425 4500 8.590204 TCACTCAAAACACTACATATAACAGGA 58.410 33.333 0.00 0.00 0.00 3.86
4431 4506 4.907875 ACACTACATATAACAGGATGCCCT 59.092 41.667 0.00 0.00 45.74 5.19
4441 4519 2.978156 AGGATGCCCTGAGTTTTTCA 57.022 45.000 0.00 0.00 42.42 2.69
4446 4524 2.795329 TGCCCTGAGTTTTTCATCTCC 58.205 47.619 0.00 0.00 34.68 3.71
4463 4541 7.199167 TCATCTCCATAATGACAGAAAAGGA 57.801 36.000 0.00 0.00 0.00 3.36
4464 4542 7.278135 TCATCTCCATAATGACAGAAAAGGAG 58.722 38.462 0.00 0.00 42.06 3.69
4465 4543 6.874278 TCTCCATAATGACAGAAAAGGAGA 57.126 37.500 0.00 0.00 45.81 3.71
4475 4553 6.467677 TGACAGAAAAGGAGAAATCTAGTGG 58.532 40.000 0.00 0.00 0.00 4.00
4482 4560 1.939255 GAGAAATCTAGTGGCAGCTGC 59.061 52.381 30.88 30.88 41.14 5.25
4501 4579 1.146263 CCCCTTCTACCACCATCGC 59.854 63.158 0.00 0.00 0.00 4.58
4513 4591 2.271800 CACCATCGCTACAAGACCTTC 58.728 52.381 0.00 0.00 0.00 3.46
4535 4613 6.367374 TCTGGTTACTCACATGGATAACAA 57.633 37.500 0.00 0.00 30.61 2.83
4543 4621 4.650734 TCACATGGATAACAAGTTGCTGA 58.349 39.130 1.81 0.00 0.00 4.26
4547 4625 3.674997 TGGATAACAAGTTGCTGACCTC 58.325 45.455 1.81 0.00 0.00 3.85
4568 4646 5.435291 CTCCATGCTTTCTAATCTCACCTT 58.565 41.667 0.00 0.00 0.00 3.50
4582 4660 3.136443 TCTCACCTTGTTGTCCATCTTGT 59.864 43.478 0.00 0.00 0.00 3.16
4584 4662 2.224079 CACCTTGTTGTCCATCTTGTCG 59.776 50.000 0.00 0.00 0.00 4.35
4585 4663 1.806542 CCTTGTTGTCCATCTTGTCGG 59.193 52.381 0.00 0.00 0.00 4.79
4605 4683 2.573369 GTATCACGGAGTCCAGAGCTA 58.427 52.381 10.49 0.00 41.61 3.32
4611 4689 1.067821 CGGAGTCCAGAGCTAACATCC 59.932 57.143 10.49 0.00 0.00 3.51
4612 4690 1.067821 GGAGTCCAGAGCTAACATCCG 59.932 57.143 3.60 0.00 0.00 4.18
4616 4694 1.009829 CCAGAGCTAACATCCGTTGC 58.990 55.000 0.00 0.00 36.52 4.17
4620 4698 2.622436 GAGCTAACATCCGTTGCTCTT 58.378 47.619 15.92 0.00 44.30 2.85
4621 4699 3.003480 GAGCTAACATCCGTTGCTCTTT 58.997 45.455 15.92 0.00 44.30 2.52
4624 4702 4.811557 AGCTAACATCCGTTGCTCTTTATC 59.188 41.667 0.00 0.00 35.78 1.75
4647 4725 6.680810 TCCTTGCACATCTTTAGAAACATTG 58.319 36.000 0.00 0.00 0.00 2.82
4653 4731 7.809331 TGCACATCTTTAGAAACATTGATTGTC 59.191 33.333 0.00 0.00 37.68 3.18
4686 4764 0.824759 GGTTATCTGCTCTGGACGGT 59.175 55.000 0.00 0.00 0.00 4.83
4688 4766 2.223758 GGTTATCTGCTCTGGACGGTAC 60.224 54.545 0.00 0.00 0.00 3.34
4731 4809 2.727798 GCACATGCGGATATTTGAATGC 59.272 45.455 0.00 0.00 0.00 3.56
4734 4812 2.363306 TGCGGATATTTGAATGCCCT 57.637 45.000 0.00 0.00 0.00 5.19
4761 4839 1.957113 GCCATAAACTGCAGCCCTTCT 60.957 52.381 15.27 0.00 0.00 2.85
4764 4842 2.949177 TAAACTGCAGCCCTTCTTCA 57.051 45.000 15.27 0.00 0.00 3.02
4765 4843 2.299326 AAACTGCAGCCCTTCTTCAT 57.701 45.000 15.27 0.00 0.00 2.57
4768 4846 1.093159 CTGCAGCCCTTCTTCATCAC 58.907 55.000 0.00 0.00 0.00 3.06
4777 4855 2.022195 CTTCTTCATCACATGGGCAGG 58.978 52.381 0.00 0.00 0.00 4.85
4780 4858 0.034186 TTCATCACATGGGCAGGACC 60.034 55.000 0.00 0.00 37.93 4.46
4809 4887 6.530120 TCTGTACTTTTTACTGCATCTGGAA 58.470 36.000 0.00 0.00 0.00 3.53
4876 4954 0.399806 GAGCCTCCCCTCTCTCCAAT 60.400 60.000 0.00 0.00 0.00 3.16
4904 4982 9.053840 TGTAGTGTTTTTCATGGTAATAACGAA 57.946 29.630 0.00 0.00 0.00 3.85
4936 5017 6.817765 GGATTGATGTTTCAAACCTACTCA 57.182 37.500 0.00 0.00 46.19 3.41
4990 5079 2.734492 GCAGGCAAAGAATGTGAGATGC 60.734 50.000 0.00 0.00 0.00 3.91
5005 5094 4.152045 GTGAGATGCTTCACAGAAGAACAG 59.848 45.833 10.72 0.00 45.32 3.16
5122 5215 4.827835 TCCTCCGTCAAGAGATTATCGATT 59.172 41.667 1.71 0.00 35.82 3.34
5143 5236 2.797177 AGGCTTGTCCAGGAATTCTC 57.203 50.000 5.23 0.00 37.29 2.87
5233 5333 1.813513 AGGAACAATGCAGGAAGACG 58.186 50.000 0.00 0.00 0.00 4.18
5326 5542 7.170998 CGGCTGTATTTTAGGTACTATTTCCTG 59.829 40.741 0.00 0.00 42.38 3.86
5372 5599 9.191995 TGTATGTATACACGCAGAATCTTATTG 57.808 33.333 7.96 0.00 38.28 1.90
5404 5631 4.584638 ACCAGTAATAATGCTGACCCAA 57.415 40.909 0.00 0.00 41.33 4.12
5405 5632 4.526970 ACCAGTAATAATGCTGACCCAAG 58.473 43.478 0.00 0.00 41.33 3.61
5406 5633 4.018415 ACCAGTAATAATGCTGACCCAAGT 60.018 41.667 0.00 0.00 41.33 3.16
5407 5634 4.949856 CCAGTAATAATGCTGACCCAAGTT 59.050 41.667 0.00 0.00 41.33 2.66
5408 5635 5.418840 CCAGTAATAATGCTGACCCAAGTTT 59.581 40.000 0.00 0.00 41.33 2.66
5578 5809 0.865769 CGGAAGTGAAGGTGGTTTCG 59.134 55.000 0.00 0.00 0.00 3.46
5579 5810 1.808891 CGGAAGTGAAGGTGGTTTCGT 60.809 52.381 0.00 0.00 0.00 3.85
5618 5864 1.543429 CGGAAATACTCATGGGAGGCC 60.543 57.143 0.00 0.00 45.81 5.19
5647 5893 7.913674 TCAGGCTTCTAAAAGATTTCTCTTC 57.086 36.000 0.00 0.00 40.93 2.87
5724 5970 2.554462 GGAACCAGAAACCTGCTTTCTC 59.446 50.000 0.00 0.00 44.68 2.87
5726 5972 3.515602 ACCAGAAACCTGCTTTCTCAT 57.484 42.857 0.00 0.00 44.68 2.90
5730 5976 4.005650 CAGAAACCTGCTTTCTCATAGCA 58.994 43.478 0.00 0.00 44.68 3.49
5736 5982 3.257469 TGCTTTCTCATAGCAGACAGG 57.743 47.619 0.00 0.00 43.30 4.00
5749 5995 2.355108 GCAGACAGGGTTCTAATCAGCA 60.355 50.000 0.00 0.00 0.00 4.41
5750 5996 3.683847 GCAGACAGGGTTCTAATCAGCAT 60.684 47.826 0.00 0.00 0.00 3.79
5752 5998 4.036518 AGACAGGGTTCTAATCAGCATCT 58.963 43.478 0.00 0.00 0.00 2.90
5754 6000 5.843421 AGACAGGGTTCTAATCAGCATCTAT 59.157 40.000 0.00 0.00 0.00 1.98
5763 6009 7.488187 TCTAATCAGCATCTATTTCTGTTGC 57.512 36.000 0.00 0.00 0.00 4.17
5764 6010 5.511234 AATCAGCATCTATTTCTGTTGCC 57.489 39.130 0.00 0.00 33.85 4.52
5772 6018 1.176527 ATTTCTGTTGCCCATGTCCG 58.823 50.000 0.00 0.00 0.00 4.79
5778 6024 3.918253 TTGCCCATGTCCGCCAGAC 62.918 63.158 0.00 0.00 46.51 3.51
5939 6187 1.066303 TGTCGGTTGTGGAAATTGCAC 59.934 47.619 10.77 10.77 39.30 4.57
6024 6281 3.004106 CAGAGAAAGCAAACCTTCTGTGG 59.996 47.826 2.03 0.00 31.99 4.17
6025 6282 2.952310 GAGAAAGCAAACCTTCTGTGGT 59.048 45.455 0.00 0.00 43.11 4.16
6046 6303 5.658634 TGGTCACTCTGCTATTTAGAGATGT 59.341 40.000 8.84 0.00 43.41 3.06
6099 6356 9.871238 AAGTTTATCTTTAGCGTCATTTCTAGA 57.129 29.630 0.00 0.00 31.57 2.43
6155 6414 1.377725 AAGAGCTTGGCATGTCCCG 60.378 57.895 0.00 0.00 0.00 5.14
6164 6423 1.560146 TGGCATGTCCCGGTATTGTTA 59.440 47.619 0.00 0.00 0.00 2.41
6184 6443 3.308438 AAAGCTGCTGCCAGTAAAATG 57.692 42.857 12.44 0.00 41.26 2.32
6186 6445 2.242043 AGCTGCTGCCAGTAAAATGTT 58.758 42.857 12.44 0.00 41.26 2.71
6281 6544 0.512518 CTCATTGACTTGCGCGTGAA 59.487 50.000 8.43 0.00 0.00 3.18
6291 6554 1.440353 GCGCGTGAAACATGGACAC 60.440 57.895 8.43 3.50 35.74 3.67
6294 6557 1.268285 CGCGTGAAACATGGACACAAA 60.268 47.619 15.48 0.00 35.74 2.83
6324 6587 2.539476 CTGCACAAACAAACAGGTTCC 58.461 47.619 0.00 0.00 0.00 3.62
6325 6588 1.205893 TGCACAAACAAACAGGTTCCC 59.794 47.619 0.00 0.00 0.00 3.97
6327 6590 2.093711 GCACAAACAAACAGGTTCCCTT 60.094 45.455 0.00 0.00 0.00 3.95
6328 6591 3.618752 GCACAAACAAACAGGTTCCCTTT 60.619 43.478 0.00 0.00 0.00 3.11
6330 6593 3.580895 ACAAACAAACAGGTTCCCTTTGT 59.419 39.130 8.53 8.53 36.49 2.83
6331 6594 4.041075 ACAAACAAACAGGTTCCCTTTGTT 59.959 37.500 16.00 16.00 42.70 2.83
6332 6595 5.246429 ACAAACAAACAGGTTCCCTTTGTTA 59.754 36.000 19.36 0.00 41.12 2.41
6333 6596 6.166982 CAAACAAACAGGTTCCCTTTGTTAA 58.833 36.000 19.36 0.00 41.12 2.01
6336 6599 5.126545 ACAAACAGGTTCCCTTTGTTAACTC 59.873 40.000 7.22 0.00 32.58 3.01
6392 6665 4.216042 TGTGTATGCAATGGTTCAGTGAAG 59.784 41.667 5.62 0.00 30.53 3.02
6398 6671 3.568007 GCAATGGTTCAGTGAAGTTGGTA 59.432 43.478 19.25 2.17 30.53 3.25
6402 6675 4.141287 TGGTTCAGTGAAGTTGGTAATGG 58.859 43.478 5.62 0.00 0.00 3.16
6453 6726 0.457443 GCAAACTATCCTTGCCTGGC 59.543 55.000 12.87 12.87 42.74 4.85
6454 6727 1.957113 GCAAACTATCCTTGCCTGGCT 60.957 52.381 21.03 0.83 42.74 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
204 210 0.544357 TCCGACCACACCCTCTTCAT 60.544 55.000 0.00 0.00 0.00 2.57
714 760 0.396556 AGTGGGGCCGAACAAAAACT 60.397 50.000 10.25 0.00 0.00 2.66
754 800 3.551485 GCGTTTGCAGTTTGACAAAGATT 59.449 39.130 0.00 0.00 42.15 2.40
805 851 3.983044 AATGGAAAGGTAAGAGCGACT 57.017 42.857 0.00 0.00 0.00 4.18
809 855 5.358160 ACTGCATTAATGGAAAGGTAAGAGC 59.642 40.000 17.02 0.00 0.00 4.09
810 856 7.396540 AACTGCATTAATGGAAAGGTAAGAG 57.603 36.000 17.02 2.02 0.00 2.85
811 857 6.377146 GGAACTGCATTAATGGAAAGGTAAGA 59.623 38.462 17.02 0.00 0.00 2.10
812 858 6.405842 GGGAACTGCATTAATGGAAAGGTAAG 60.406 42.308 17.02 3.39 0.00 2.34
813 859 5.420739 GGGAACTGCATTAATGGAAAGGTAA 59.579 40.000 17.02 0.00 0.00 2.85
814 860 4.953579 GGGAACTGCATTAATGGAAAGGTA 59.046 41.667 17.02 0.00 0.00 3.08
815 861 3.769300 GGGAACTGCATTAATGGAAAGGT 59.231 43.478 17.02 6.09 0.00 3.50
816 862 3.132824 GGGGAACTGCATTAATGGAAAGG 59.867 47.826 17.02 5.47 0.00 3.11
817 863 3.132824 GGGGGAACTGCATTAATGGAAAG 59.867 47.826 17.02 6.16 0.00 2.62
818 864 3.103742 GGGGGAACTGCATTAATGGAAA 58.896 45.455 17.02 0.00 0.00 3.13
819 865 2.745968 GGGGGAACTGCATTAATGGAA 58.254 47.619 17.02 0.00 0.00 3.53
820 866 2.452600 GGGGGAACTGCATTAATGGA 57.547 50.000 17.02 13.34 0.00 3.41
842 888 8.831715 AATTCGAAGGAACTGCATTAATTTTT 57.168 26.923 3.35 0.00 40.86 1.94
843 889 8.831715 AAATTCGAAGGAACTGCATTAATTTT 57.168 26.923 3.35 0.00 40.86 1.82
844 890 8.831715 AAAATTCGAAGGAACTGCATTAATTT 57.168 26.923 3.35 0.00 40.86 1.82
845 891 8.087750 TGAAAATTCGAAGGAACTGCATTAATT 58.912 29.630 3.35 0.00 40.86 1.40
846 892 7.542130 GTGAAAATTCGAAGGAACTGCATTAAT 59.458 33.333 3.35 0.00 40.86 1.40
847 893 6.861055 GTGAAAATTCGAAGGAACTGCATTAA 59.139 34.615 3.35 0.00 40.86 1.40
848 894 6.378582 GTGAAAATTCGAAGGAACTGCATTA 58.621 36.000 3.35 0.00 40.86 1.90
849 895 5.222631 GTGAAAATTCGAAGGAACTGCATT 58.777 37.500 3.35 0.00 40.86 3.56
850 896 4.321230 GGTGAAAATTCGAAGGAACTGCAT 60.321 41.667 3.35 0.00 40.86 3.96
851 897 3.004315 GGTGAAAATTCGAAGGAACTGCA 59.996 43.478 3.35 0.00 40.86 4.41
852 898 3.565516 GGTGAAAATTCGAAGGAACTGC 58.434 45.455 3.35 0.00 40.86 4.40
853 899 3.568007 TGGGTGAAAATTCGAAGGAACTG 59.432 43.478 3.35 0.00 40.86 3.16
855 901 3.568430 ACTGGGTGAAAATTCGAAGGAAC 59.432 43.478 3.35 0.00 34.37 3.62
856 902 3.827722 ACTGGGTGAAAATTCGAAGGAA 58.172 40.909 3.35 0.00 36.41 3.36
857 903 3.502123 ACTGGGTGAAAATTCGAAGGA 57.498 42.857 3.35 0.00 0.00 3.36
858 904 3.439129 GGTACTGGGTGAAAATTCGAAGG 59.561 47.826 3.35 0.00 0.00 3.46
859 905 4.324267 AGGTACTGGGTGAAAATTCGAAG 58.676 43.478 3.35 0.00 37.18 3.79
860 906 4.202377 TGAGGTACTGGGTGAAAATTCGAA 60.202 41.667 0.00 0.00 41.55 3.71
861 907 3.325425 TGAGGTACTGGGTGAAAATTCGA 59.675 43.478 0.00 0.00 41.55 3.71
862 908 3.435671 GTGAGGTACTGGGTGAAAATTCG 59.564 47.826 0.00 0.00 41.55 3.34
863 909 4.215613 GTGTGAGGTACTGGGTGAAAATTC 59.784 45.833 0.00 0.00 41.55 2.17
864 910 4.142038 GTGTGAGGTACTGGGTGAAAATT 58.858 43.478 0.00 0.00 41.55 1.82
865 911 3.137544 TGTGTGAGGTACTGGGTGAAAAT 59.862 43.478 0.00 0.00 41.55 1.82
866 912 2.506231 TGTGTGAGGTACTGGGTGAAAA 59.494 45.455 0.00 0.00 41.55 2.29
867 913 2.120312 TGTGTGAGGTACTGGGTGAAA 58.880 47.619 0.00 0.00 41.55 2.69
868 914 1.414919 GTGTGTGAGGTACTGGGTGAA 59.585 52.381 0.00 0.00 41.55 3.18
869 915 1.045407 GTGTGTGAGGTACTGGGTGA 58.955 55.000 0.00 0.00 41.55 4.02
870 916 1.000955 GAGTGTGTGAGGTACTGGGTG 59.999 57.143 0.00 0.00 41.55 4.61
871 917 1.339097 GAGTGTGTGAGGTACTGGGT 58.661 55.000 0.00 0.00 41.55 4.51
872 918 1.273606 CTGAGTGTGTGAGGTACTGGG 59.726 57.143 0.00 0.00 41.55 4.45
873 919 2.029828 GTCTGAGTGTGTGAGGTACTGG 60.030 54.545 0.00 0.00 41.55 4.00
874 920 2.887783 AGTCTGAGTGTGTGAGGTACTG 59.112 50.000 0.00 0.00 41.55 2.74
876 922 4.154556 GTCTAGTCTGAGTGTGTGAGGTAC 59.845 50.000 0.00 0.00 0.00 3.34
877 923 4.325119 GTCTAGTCTGAGTGTGTGAGGTA 58.675 47.826 0.00 0.00 0.00 3.08
878 924 3.150767 GTCTAGTCTGAGTGTGTGAGGT 58.849 50.000 0.00 0.00 0.00 3.85
879 925 2.160615 CGTCTAGTCTGAGTGTGTGAGG 59.839 54.545 0.00 0.00 0.00 3.86
880 926 2.160615 CCGTCTAGTCTGAGTGTGTGAG 59.839 54.545 0.00 0.00 0.00 3.51
881 927 2.152016 CCGTCTAGTCTGAGTGTGTGA 58.848 52.381 0.00 0.00 0.00 3.58
882 928 1.401670 GCCGTCTAGTCTGAGTGTGTG 60.402 57.143 0.00 0.00 0.00 3.82
883 929 0.882474 GCCGTCTAGTCTGAGTGTGT 59.118 55.000 0.00 0.00 0.00 3.72
884 930 0.179187 CGCCGTCTAGTCTGAGTGTG 60.179 60.000 0.00 0.00 0.00 3.82
885 931 0.321387 TCGCCGTCTAGTCTGAGTGT 60.321 55.000 0.00 0.00 0.00 3.55
886 932 0.803117 TTCGCCGTCTAGTCTGAGTG 59.197 55.000 0.00 0.00 0.00 3.51
887 933 1.752683 ATTCGCCGTCTAGTCTGAGT 58.247 50.000 0.00 0.00 0.00 3.41
888 934 2.722071 GAATTCGCCGTCTAGTCTGAG 58.278 52.381 0.00 0.00 0.00 3.35
889 935 1.063616 CGAATTCGCCGTCTAGTCTGA 59.936 52.381 15.93 0.00 0.00 3.27
890 936 1.467875 CGAATTCGCCGTCTAGTCTG 58.532 55.000 15.93 0.00 0.00 3.51
891 937 0.381089 CCGAATTCGCCGTCTAGTCT 59.619 55.000 22.36 0.00 38.18 3.24
892 938 1.207377 GCCGAATTCGCCGTCTAGTC 61.207 60.000 22.36 0.48 38.18 2.59
893 939 1.226888 GCCGAATTCGCCGTCTAGT 60.227 57.895 22.36 0.00 38.18 2.57
894 940 0.309922 TAGCCGAATTCGCCGTCTAG 59.690 55.000 22.36 7.92 38.18 2.43
895 941 0.029834 GTAGCCGAATTCGCCGTCTA 59.970 55.000 22.36 15.41 38.18 2.59
896 942 1.226888 GTAGCCGAATTCGCCGTCT 60.227 57.895 22.36 16.31 38.18 4.18
897 943 1.226888 AGTAGCCGAATTCGCCGTC 60.227 57.895 22.36 9.86 38.18 4.79
898 944 1.518572 CAGTAGCCGAATTCGCCGT 60.519 57.895 22.36 10.72 38.18 5.68
899 945 2.871427 GCAGTAGCCGAATTCGCCG 61.871 63.158 22.36 10.84 38.18 6.46
900 946 0.249322 TAGCAGTAGCCGAATTCGCC 60.249 55.000 22.36 11.98 43.56 5.54
901 947 0.853419 GTAGCAGTAGCCGAATTCGC 59.147 55.000 22.36 16.76 43.56 4.70
902 948 2.120232 CTGTAGCAGTAGCCGAATTCG 58.880 52.381 20.92 20.92 43.56 3.34
903 949 3.438297 TCTGTAGCAGTAGCCGAATTC 57.562 47.619 0.00 0.00 43.56 2.17
904 950 5.531122 TTATCTGTAGCAGTAGCCGAATT 57.469 39.130 0.00 0.00 43.56 2.17
905 951 4.559704 GCTTATCTGTAGCAGTAGCCGAAT 60.560 45.833 0.00 0.00 43.56 3.34
906 952 3.243434 GCTTATCTGTAGCAGTAGCCGAA 60.243 47.826 0.00 0.00 43.56 4.30
907 953 2.293677 GCTTATCTGTAGCAGTAGCCGA 59.706 50.000 0.00 0.00 43.56 5.54
908 954 2.294791 AGCTTATCTGTAGCAGTAGCCG 59.705 50.000 12.83 0.00 43.56 5.52
909 955 3.572255 AGAGCTTATCTGTAGCAGTAGCC 59.428 47.826 12.83 7.97 41.11 3.93
910 956 4.846779 AGAGCTTATCTGTAGCAGTAGC 57.153 45.455 0.00 10.29 41.11 3.58
918 964 7.636859 GCTTGAGCACCAGAGCTTATCTGTA 62.637 48.000 4.33 0.00 46.75 2.74
919 965 6.952119 GCTTGAGCACCAGAGCTTATCTGT 62.952 50.000 4.33 0.00 46.75 3.41
920 966 4.536005 GCTTGAGCACCAGAGCTTATCTG 61.536 52.174 0.00 0.00 46.75 2.90
921 967 2.419851 GCTTGAGCACCAGAGCTTATCT 60.420 50.000 0.00 0.00 46.75 1.98
922 968 1.939255 GCTTGAGCACCAGAGCTTATC 59.061 52.381 0.00 0.00 46.75 1.75
923 969 1.558756 AGCTTGAGCACCAGAGCTTAT 59.441 47.619 5.70 0.00 46.75 1.73
924 970 0.979665 AGCTTGAGCACCAGAGCTTA 59.020 50.000 5.70 0.00 46.75 3.09
925 971 0.321475 GAGCTTGAGCACCAGAGCTT 60.321 55.000 5.70 0.00 46.75 3.74
927 973 1.020333 CAGAGCTTGAGCACCAGAGC 61.020 60.000 5.70 0.00 45.16 4.09
928 974 1.020333 GCAGAGCTTGAGCACCAGAG 61.020 60.000 5.70 0.00 45.16 3.35
929 975 1.004080 GCAGAGCTTGAGCACCAGA 60.004 57.895 5.70 0.00 45.16 3.86
930 976 1.302271 TGCAGAGCTTGAGCACCAG 60.302 57.895 5.70 0.00 45.16 4.00
931 977 2.831043 TGCAGAGCTTGAGCACCA 59.169 55.556 5.70 0.00 45.16 4.17
934 980 3.046087 GCGTGCAGAGCTTGAGCA 61.046 61.111 5.70 4.79 45.16 4.26
935 981 3.797546 GGCGTGCAGAGCTTGAGC 61.798 66.667 13.01 0.00 42.49 4.26
936 982 1.703438 GATGGCGTGCAGAGCTTGAG 61.703 60.000 13.01 0.00 34.52 3.02
937 983 1.742880 GATGGCGTGCAGAGCTTGA 60.743 57.895 13.01 0.11 34.52 3.02
938 984 2.758089 GGATGGCGTGCAGAGCTTG 61.758 63.158 13.01 0.00 34.52 4.01
939 985 2.437359 GGATGGCGTGCAGAGCTT 60.437 61.111 13.01 2.67 34.52 3.74
940 986 4.479993 GGGATGGCGTGCAGAGCT 62.480 66.667 13.01 0.00 34.52 4.09
941 987 3.094062 TAGGGATGGCGTGCAGAGC 62.094 63.158 5.59 5.59 0.00 4.09
942 988 1.227380 GTAGGGATGGCGTGCAGAG 60.227 63.158 0.00 0.00 0.00 3.35
943 989 1.337384 ATGTAGGGATGGCGTGCAGA 61.337 55.000 0.00 0.00 0.00 4.26
944 990 0.882042 GATGTAGGGATGGCGTGCAG 60.882 60.000 0.00 0.00 0.00 4.41
945 991 1.146041 GATGTAGGGATGGCGTGCA 59.854 57.895 0.00 0.00 0.00 4.57
946 992 1.598130 GGATGTAGGGATGGCGTGC 60.598 63.158 0.00 0.00 0.00 5.34
947 993 0.034059 GAGGATGTAGGGATGGCGTG 59.966 60.000 0.00 0.00 0.00 5.34
948 994 1.464376 CGAGGATGTAGGGATGGCGT 61.464 60.000 0.00 0.00 0.00 5.68
949 995 1.290324 CGAGGATGTAGGGATGGCG 59.710 63.158 0.00 0.00 0.00 5.69
950 996 0.832135 TCCGAGGATGTAGGGATGGC 60.832 60.000 0.00 0.00 0.00 4.40
951 997 1.827969 GATCCGAGGATGTAGGGATGG 59.172 57.143 9.69 0.00 39.32 3.51
956 1002 3.343617 GAGAGAGATCCGAGGATGTAGG 58.656 54.545 9.69 0.00 34.60 3.18
991 1046 4.856801 GACATCCATGGGCGCGGT 62.857 66.667 13.02 3.12 0.00 5.68
994 1049 3.576356 CACGACATCCATGGGCGC 61.576 66.667 13.02 0.00 34.53 6.53
995 1050 2.896854 CCACGACATCCATGGGCG 60.897 66.667 13.02 13.10 36.33 6.13
996 1051 2.516930 CCCACGACATCCATGGGC 60.517 66.667 13.02 0.00 46.52 5.36
1041 1096 1.153667 GCTGACGAGCTTCTCCAGG 60.154 63.158 0.00 0.00 42.52 4.45
1153 1208 0.467290 GAGAGGACGAGATGGAGGCT 60.467 60.000 0.00 0.00 0.00 4.58
1227 1282 3.471244 GAGTCGATGGAGACGGCGG 62.471 68.421 13.24 0.00 45.26 6.13
1233 1288 2.775856 GCAGGCGAGTCGATGGAGA 61.776 63.158 18.61 0.00 0.00 3.71
1249 1304 2.661537 CAGGTTGTCTGCGTCGCA 60.662 61.111 20.44 20.44 36.60 5.10
1257 1312 0.387929 TTTCGTCGAGCAGGTTGTCT 59.612 50.000 0.00 0.00 0.00 3.41
1314 1369 1.133407 GAGGAAGTGTCACTAGCCTCG 59.867 57.143 26.54 0.00 38.93 4.63
1319 1374 1.133407 GCGAGGAGGAAGTGTCACTAG 59.867 57.143 5.77 0.00 0.00 2.57
1320 1375 1.174783 GCGAGGAGGAAGTGTCACTA 58.825 55.000 5.77 0.00 0.00 2.74
1323 1378 0.827925 ACAGCGAGGAGGAAGTGTCA 60.828 55.000 0.00 0.00 0.00 3.58
1339 1394 4.778415 CGACTGGACGGCGGACAG 62.778 72.222 24.77 24.77 38.19 3.51
1389 1444 0.460987 CCTCATCTCCACCAAGTCGC 60.461 60.000 0.00 0.00 0.00 5.19
1393 1448 1.489649 AGCATCCTCATCTCCACCAAG 59.510 52.381 0.00 0.00 0.00 3.61
1401 1461 1.333177 GGACGGTAGCATCCTCATCT 58.667 55.000 0.00 0.00 31.75 2.90
1413 1473 3.383505 AGATGTCATCAATTCGGACGGTA 59.616 43.478 15.20 0.00 34.32 4.02
1418 1478 4.445453 CCTCAAGATGTCATCAATTCGGA 58.555 43.478 15.20 2.66 0.00 4.55
1431 1497 1.012086 CACACATCCGCCTCAAGATG 58.988 55.000 0.00 0.00 44.44 2.90
1439 1505 2.401766 CCAGCTTCACACATCCGCC 61.402 63.158 0.00 0.00 0.00 6.13
1442 1508 1.731720 GTCTCCAGCTTCACACATCC 58.268 55.000 0.00 0.00 0.00 3.51
1443 1509 1.067565 TCGTCTCCAGCTTCACACATC 60.068 52.381 0.00 0.00 0.00 3.06
1461 1527 0.460109 TGATTGCCTCACGGACATCG 60.460 55.000 0.00 0.00 45.88 3.84
1467 1533 1.019673 CCATCTTGATTGCCTCACGG 58.980 55.000 0.00 0.00 32.17 4.94
1476 1542 3.369892 CGTCCAACCTCTCCATCTTGATT 60.370 47.826 0.00 0.00 0.00 2.57
1477 1543 2.169352 CGTCCAACCTCTCCATCTTGAT 59.831 50.000 0.00 0.00 0.00 2.57
1490 1556 0.814010 AGTGACAACAGCGTCCAACC 60.814 55.000 0.00 0.00 34.88 3.77
1492 1558 1.013596 CAAGTGACAACAGCGTCCAA 58.986 50.000 0.00 0.00 34.88 3.53
1523 1589 0.464373 ACGGCAATCCATACCAGCAG 60.464 55.000 0.00 0.00 0.00 4.24
1537 1603 4.182433 TGTTGTCCAGCCACGGCA 62.182 61.111 11.35 0.00 44.88 5.69
1546 1612 2.758009 GGTAACGTAAGCTGTTGTCCA 58.242 47.619 0.00 0.00 45.62 4.02
1572 1638 4.080863 ACAGCGTCTCTCCCAAATATCTTT 60.081 41.667 0.00 0.00 0.00 2.52
1590 1656 1.806542 ACAATGTGCTCCTTTACAGCG 59.193 47.619 0.00 0.00 40.01 5.18
1604 1670 1.284982 GACGAGCGTCTGCACAATGT 61.285 55.000 15.13 0.00 46.23 2.71
1620 1686 3.485431 CAAGCCTCAGCGCTGACG 61.485 66.667 35.30 30.14 46.67 4.35
1623 1689 3.429141 CCACAAGCCTCAGCGCTG 61.429 66.667 31.53 31.53 46.67 5.18
1626 1692 2.281070 ACACCACAAGCCTCAGCG 60.281 61.111 0.00 0.00 46.67 5.18
1645 1711 4.339247 CACAATTGGAAGGACTGACAAGTT 59.661 41.667 10.83 0.00 36.52 2.66
1647 1713 4.494350 CACAATTGGAAGGACTGACAAG 57.506 45.455 10.83 0.00 0.00 3.16
1662 1728 1.181786 CACCGCCATTACCCACAATT 58.818 50.000 0.00 0.00 0.00 2.32
1671 1737 1.614413 GTTTTCCCAACACCGCCATTA 59.386 47.619 0.00 0.00 0.00 1.90
1677 1743 3.121738 AGAGTAGTTTTCCCAACACCG 57.878 47.619 0.00 0.00 0.00 4.94
1701 1767 1.136502 GCATCGCTATAAACGAGCTGC 60.137 52.381 0.00 7.33 43.74 5.25
1770 1836 4.092091 GTGAGCCTTACTTCATCAAAGTCG 59.908 45.833 0.00 0.00 45.28 4.18
1813 1879 2.415090 GCTTGCTTGCACCAGTTGATAG 60.415 50.000 0.00 0.00 0.00 2.08
1815 1881 0.316204 GCTTGCTTGCACCAGTTGAT 59.684 50.000 0.00 0.00 0.00 2.57
1826 1892 3.057104 TGTGATTCCTTCATGCTTGCTTG 60.057 43.478 2.58 2.58 36.54 4.01
1827 1893 3.159472 TGTGATTCCTTCATGCTTGCTT 58.841 40.909 0.00 0.00 36.54 3.91
1878 1944 2.984471 TCGTTTCGACTTCAAATCCTCG 59.016 45.455 0.00 0.00 0.00 4.63
1896 1962 4.039973 TCATCCAAAACAAGGAGTAGTCGT 59.960 41.667 0.00 0.00 38.83 4.34
1899 1965 7.554118 CACATATCATCCAAAACAAGGAGTAGT 59.446 37.037 0.00 0.00 38.83 2.73
1902 1968 5.653769 CCACATATCATCCAAAACAAGGAGT 59.346 40.000 0.00 0.00 38.83 3.85
1905 1971 4.955450 TCCCACATATCATCCAAAACAAGG 59.045 41.667 0.00 0.00 0.00 3.61
1917 1983 9.123902 CTTTTATCATTGTCTTCCCACATATCA 57.876 33.333 0.00 0.00 0.00 2.15
1959 2025 4.491676 TCGAACATCTTAGTGGTGCTAAC 58.508 43.478 0.00 0.00 34.95 2.34
1980 2046 3.005472 CCAGGATGACATTGCCATTCATC 59.995 47.826 11.30 11.30 43.32 2.92
1995 2061 4.520111 TGATTTCTTGTTGTGACCAGGATG 59.480 41.667 0.00 0.00 0.00 3.51
1999 2065 5.149273 CGAATGATTTCTTGTTGTGACCAG 58.851 41.667 0.00 0.00 0.00 4.00
2010 2076 9.927668 ATCATTTTTACAACCGAATGATTTCTT 57.072 25.926 4.97 0.00 43.15 2.52
2025 2091 9.403583 GGGTCCATAGTAGAAATCATTTTTACA 57.596 33.333 12.16 1.14 0.00 2.41
2100 2166 4.274978 TCTCATCACCAAATGCACATGAT 58.725 39.130 0.00 0.00 0.00 2.45
2140 2206 4.080299 CCTCTTCCCAATAACCTGTAAGCT 60.080 45.833 0.00 0.00 0.00 3.74
2142 2208 5.693769 TCCTCTTCCCAATAACCTGTAAG 57.306 43.478 0.00 0.00 0.00 2.34
2158 2224 4.640771 TCAACTTGTTGGCTATCCTCTT 57.359 40.909 12.75 0.00 0.00 2.85
2161 2227 3.562176 CCCTTCAACTTGTTGGCTATCCT 60.562 47.826 12.75 0.00 0.00 3.24
2211 2277 0.390472 GGTCTCTTCTCAACAGGGCG 60.390 60.000 0.00 0.00 0.00 6.13
2214 2280 4.252073 CATCAAGGTCTCTTCTCAACAGG 58.748 47.826 0.00 0.00 0.00 4.00
2241 2307 3.663995 TGCAAAATTGACATCCAGTGG 57.336 42.857 1.40 1.40 0.00 4.00
2254 2320 5.410439 GCTTCCATTCATCACTTTGCAAAAT 59.590 36.000 13.84 0.00 0.00 1.82
2342 2408 7.435192 CACAATAAGAAAAACACCTTTGGAGAC 59.565 37.037 0.00 0.00 0.00 3.36
2379 2445 2.231964 CCCATCAAACATGTGACCCTTG 59.768 50.000 0.00 0.00 0.00 3.61
2401 2467 1.068333 CCAAATGCGAACCAAGTCCAG 60.068 52.381 0.00 0.00 0.00 3.86
2434 2500 7.596749 TTCGCTTACTTCCAGAAGAAATAAG 57.403 36.000 14.19 11.66 43.83 1.73
2482 2548 4.122776 CCTCGGTCCACTAAATCATTCAG 58.877 47.826 0.00 0.00 0.00 3.02
2483 2549 3.681594 GCCTCGGTCCACTAAATCATTCA 60.682 47.826 0.00 0.00 0.00 2.57
2484 2550 2.872858 GCCTCGGTCCACTAAATCATTC 59.127 50.000 0.00 0.00 0.00 2.67
2485 2551 2.505819 AGCCTCGGTCCACTAAATCATT 59.494 45.455 0.00 0.00 0.00 2.57
2486 2552 2.119495 AGCCTCGGTCCACTAAATCAT 58.881 47.619 0.00 0.00 0.00 2.45
2544 2614 5.311265 ACTATATGTGCCAGGTCATGAATG 58.689 41.667 0.00 0.00 0.00 2.67
2608 2678 1.168714 GCATGACCTGTTCCACTTCC 58.831 55.000 0.00 0.00 0.00 3.46
2625 2695 6.264518 TGATAGATAGGTGTCGAATAGTTGCA 59.735 38.462 0.00 0.00 0.00 4.08
2626 2696 6.678878 TGATAGATAGGTGTCGAATAGTTGC 58.321 40.000 0.00 0.00 0.00 4.17
2677 2747 1.130955 GAAAAACTGCACGCATGTGG 58.869 50.000 11.65 0.76 46.51 4.17
2681 2751 0.598065 GGGAGAAAAACTGCACGCAT 59.402 50.000 0.00 0.00 38.74 4.73
2685 2755 2.297701 TCACTGGGAGAAAAACTGCAC 58.702 47.619 0.00 0.00 38.74 4.57
2688 2758 6.884280 AAGTTATCACTGGGAGAAAAACTG 57.116 37.500 0.00 0.00 31.60 3.16
2690 2760 7.228706 TCTGAAAGTTATCACTGGGAGAAAAAC 59.771 37.037 0.00 0.00 31.60 2.43
2834 2906 3.366440 ACCTCAATACGCGAAGATACC 57.634 47.619 15.93 0.00 0.00 2.73
2857 2929 5.047943 AGTCTATGCTATAACTTAGCGTGGG 60.048 44.000 9.09 3.52 43.13 4.61
2861 2933 7.372451 AGAGAGTCTATGCTATAACTTAGCG 57.628 40.000 0.00 0.00 43.13 4.26
2871 2943 9.854668 AAGTTACAGATTAGAGAGTCTATGCTA 57.145 33.333 0.00 0.00 0.00 3.49
2907 2979 2.307768 TCGAGGTAGCGAAGATGGATT 58.692 47.619 0.00 0.00 37.35 3.01
2949 3021 0.400213 TAACCTCTGGCAAGGGTGTG 59.600 55.000 14.17 0.00 41.04 3.82
2950 3022 1.372501 ATAACCTCTGGCAAGGGTGT 58.627 50.000 14.17 6.81 41.04 4.16
2951 3023 3.480470 CATATAACCTCTGGCAAGGGTG 58.520 50.000 14.17 5.36 41.04 4.61
2985 3057 4.826274 TTCTACATCAAGAACCTGGAGG 57.174 45.455 0.00 0.00 42.17 4.30
3006 3078 3.182152 AGTAGAAAGGTGCACCCAGTAT 58.818 45.455 32.29 16.86 36.42 2.12
3009 3081 2.568623 AAGTAGAAAGGTGCACCCAG 57.431 50.000 32.29 0.00 36.42 4.45
3016 3088 4.700213 CCCATGTGGTAAAGTAGAAAGGTG 59.300 45.833 0.00 0.00 0.00 4.00
3018 3090 5.174037 TCCCATGTGGTAAAGTAGAAAGG 57.826 43.478 0.00 0.00 34.77 3.11
3025 3097 5.772393 TTACTCATCCCATGTGGTAAAGT 57.228 39.130 0.00 1.78 32.03 2.66
3039 3111 7.712639 TGCCTCAGATTTACAAGATTACTCATC 59.287 37.037 0.00 0.00 0.00 2.92
3044 3116 9.294030 CAAAATGCCTCAGATTTACAAGATTAC 57.706 33.333 0.00 0.00 0.00 1.89
3045 3117 9.023962 ACAAAATGCCTCAGATTTACAAGATTA 57.976 29.630 0.00 0.00 0.00 1.75
3052 3124 5.768333 GCAACAAAATGCCTCAGATTTAC 57.232 39.130 0.00 0.00 40.49 2.01
3111 3183 3.006247 CTCTTGGAGCAACTTTAGCCTC 58.994 50.000 0.00 0.00 0.00 4.70
3133 3205 1.555075 TCCCACTCGGAATTCCTTCAG 59.445 52.381 22.05 16.11 37.88 3.02
3185 3257 2.421529 CCTCCCAATTCTCTTAACCCGG 60.422 54.545 0.00 0.00 0.00 5.73
3186 3258 2.504175 TCCTCCCAATTCTCTTAACCCG 59.496 50.000 0.00 0.00 0.00 5.28
3257 3329 4.314522 TTGTCCCTTAATCCAGCATTCA 57.685 40.909 0.00 0.00 0.00 2.57
3298 3370 3.804325 CGGTTCTTACACCATGATAGCAG 59.196 47.826 0.00 0.00 36.49 4.24
3303 3375 3.713826 AACCGGTTCTTACACCATGAT 57.286 42.857 15.86 0.00 36.49 2.45
3349 3421 1.140312 TGAAGACCCTCAAGCACCTT 58.860 50.000 0.00 0.00 0.00 3.50
3384 3456 8.033038 CCATAACTAGTTATATGAAGGCGCTTA 58.967 37.037 24.29 0.00 34.27 3.09
3419 3491 1.077663 AGCTCAACCATGTTGGGGAAT 59.922 47.619 8.77 0.00 43.37 3.01
3426 3498 4.262592 GGAAAATTGGAGCTCAACCATGTT 60.263 41.667 17.19 0.00 38.31 2.71
3450 3522 3.888930 AGATAGACTCTAAGCTGGTGAGC 59.111 47.826 9.81 0.00 37.76 4.26
3511 3583 2.397044 AGGAGTGGAAATTGCCCAAA 57.603 45.000 0.00 0.00 35.12 3.28
3540 3612 4.525912 AGCAGACAATTGAACCAAATCC 57.474 40.909 13.59 0.00 0.00 3.01
3588 3660 2.910199 TCAGATTCAGCCCAATCTTCG 58.090 47.619 5.22 0.00 40.52 3.79
3591 3663 3.446516 GCTTTTCAGATTCAGCCCAATCT 59.553 43.478 2.50 2.50 42.80 2.40
3598 3670 3.442977 AGGACATGCTTTTCAGATTCAGC 59.557 43.478 0.00 0.00 0.00 4.26
3680 3752 2.816087 CCACTGGAAGAAGATTGTGGTG 59.184 50.000 0.00 0.00 39.80 4.17
3684 3756 2.957402 TGCCACTGGAAGAAGATTGT 57.043 45.000 0.00 0.00 37.43 2.71
3689 3761 0.600057 GCCTTTGCCACTGGAAGAAG 59.400 55.000 0.00 0.00 37.43 2.85
3701 3773 0.664466 GCCGAAGTGAAAGCCTTTGC 60.664 55.000 0.00 0.00 37.95 3.68
3720 3795 0.030235 TGTTGACACGACGGAGACAG 59.970 55.000 0.00 0.00 0.00 3.51
3735 3810 4.940046 AGCTGAGGACAATTGTAGATGTTG 59.060 41.667 11.95 0.56 0.00 3.33
3747 3822 5.488341 GGTAAGTGAATAAGCTGAGGACAA 58.512 41.667 0.00 0.00 0.00 3.18
3759 3834 4.351407 TCACCAAACTGGGGTAAGTGAATA 59.649 41.667 0.00 0.00 42.97 1.75
3797 3872 5.363868 CCTACTCCCTCAATAGACATTGTGA 59.636 44.000 0.00 0.00 41.96 3.58
3823 3898 6.094603 ACAAGTAATCTGATGTGAGGAAATGC 59.905 38.462 0.00 0.00 0.00 3.56
3844 3919 2.032426 TGATATGCAATGCTCGCACAAG 59.968 45.455 6.82 0.00 43.35 3.16
3871 3946 2.417719 CAAGGTTCTCACACTAGCACC 58.582 52.381 0.00 0.00 33.46 5.01
3904 3979 4.695455 TCTGCAGCCAGTCAAAACTAATAC 59.305 41.667 9.47 0.00 40.09 1.89
3905 3980 4.695455 GTCTGCAGCCAGTCAAAACTAATA 59.305 41.667 9.47 0.00 40.09 0.98
3919 3994 1.741032 GAGCACTGAGTCTGCAGCC 60.741 63.158 9.47 0.00 39.51 4.85
3920 3995 0.320596 AAGAGCACTGAGTCTGCAGC 60.321 55.000 9.47 4.26 39.51 5.25
3927 4002 6.291377 TGTTAATTTCTCAAGAGCACTGAGT 58.709 36.000 8.90 0.00 0.00 3.41
3930 4005 8.807667 AAATTGTTAATTTCTCAAGAGCACTG 57.192 30.769 0.00 0.00 36.38 3.66
3955 4030 7.011763 CAGATATTCAAAATCCAGAAAGCTCGA 59.988 37.037 0.00 0.00 0.00 4.04
3957 4032 6.916932 GCAGATATTCAAAATCCAGAAAGCTC 59.083 38.462 0.00 0.00 0.00 4.09
3963 4038 5.537295 CCATGGCAGATATTCAAAATCCAGA 59.463 40.000 0.00 0.00 0.00 3.86
3970 4045 6.811634 AATTTCCCATGGCAGATATTCAAA 57.188 33.333 6.09 0.00 0.00 2.69
3974 4049 6.384886 ACAGAAAATTTCCCATGGCAGATATT 59.615 34.615 6.09 3.67 0.00 1.28
3979 4054 3.258872 TGACAGAAAATTTCCCATGGCAG 59.741 43.478 6.09 0.00 0.00 4.85
3997 4072 5.728471 CATTTCTAAGGAGAGAAGCTGACA 58.272 41.667 0.00 0.00 36.80 3.58
3999 4074 4.469227 AGCATTTCTAAGGAGAGAAGCTGA 59.531 41.667 0.00 0.00 36.28 4.26
4002 4077 3.876320 CCAGCATTTCTAAGGAGAGAAGC 59.124 47.826 0.00 0.00 36.80 3.86
4051 4126 3.200605 TGGCCATATGGATATACAGGCAG 59.799 47.826 26.47 0.00 41.56 4.85
4058 4133 4.081142 CACCTCGTTGGCCATATGGATATA 60.081 45.833 26.47 4.81 40.22 0.86
4059 4134 2.912956 ACCTCGTTGGCCATATGGATAT 59.087 45.455 26.47 0.00 40.22 1.63
4065 4140 2.026262 AGTTTCACCTCGTTGGCCATAT 60.026 45.455 6.09 0.00 40.22 1.78
4070 4145 2.973945 AGATAGTTTCACCTCGTTGGC 58.026 47.619 0.00 0.00 40.22 4.52
4079 4154 5.645497 AGCAATGGTGAGAAGATAGTTTCAC 59.355 40.000 0.00 0.00 39.29 3.18
4080 4155 5.809001 AGCAATGGTGAGAAGATAGTTTCA 58.191 37.500 0.00 0.00 0.00 2.69
4081 4156 5.877012 TGAGCAATGGTGAGAAGATAGTTTC 59.123 40.000 0.00 0.00 0.00 2.78
4082 4157 5.809001 TGAGCAATGGTGAGAAGATAGTTT 58.191 37.500 0.00 0.00 0.00 2.66
4084 4159 5.188555 TCTTGAGCAATGGTGAGAAGATAGT 59.811 40.000 0.00 0.00 0.00 2.12
4087 4162 4.564782 TCTTGAGCAATGGTGAGAAGAT 57.435 40.909 0.00 0.00 0.00 2.40
4088 4163 4.321718 CTTCTTGAGCAATGGTGAGAAGA 58.678 43.478 21.00 10.18 41.45 2.87
4089 4164 4.681835 CTTCTTGAGCAATGGTGAGAAG 57.318 45.455 15.77 15.77 35.64 2.85
4116 4191 3.314357 CAGTGATACCACATGCTTGGATG 59.686 47.826 9.25 0.59 45.54 3.51
4124 4199 2.292267 GCTTCCCAGTGATACCACATG 58.708 52.381 0.00 0.00 45.54 3.21
4195 4270 6.012745 AGGATGCTATTTTTGGACACTTTCT 58.987 36.000 0.00 0.00 0.00 2.52
4199 4274 4.463891 CCAAGGATGCTATTTTTGGACACT 59.536 41.667 0.00 0.00 40.52 3.55
4200 4275 4.747810 CCAAGGATGCTATTTTTGGACAC 58.252 43.478 0.00 0.00 40.52 3.67
4225 4300 1.617804 CCCAGCAATCAGACCACCAAT 60.618 52.381 0.00 0.00 0.00 3.16
4240 4315 0.106819 ATGGAGCTCACATTCCCAGC 60.107 55.000 17.19 0.00 32.29 4.85
4249 4324 4.128925 TGTCAGATGTTATGGAGCTCAC 57.871 45.455 17.19 5.46 0.00 3.51
4251 4326 3.873952 GGTTGTCAGATGTTATGGAGCTC 59.126 47.826 4.71 4.71 0.00 4.09
4258 4333 4.245660 CAGTCGTGGTTGTCAGATGTTAT 58.754 43.478 0.00 0.00 0.00 1.89
4259 4334 3.554129 CCAGTCGTGGTTGTCAGATGTTA 60.554 47.826 0.00 0.00 39.30 2.41
4267 4342 0.935196 GTTGTCCAGTCGTGGTTGTC 59.065 55.000 0.00 0.00 45.28 3.18
4276 4351 1.808945 CAAGCCATCAGTTGTCCAGTC 59.191 52.381 0.00 0.00 0.00 3.51
4286 4361 2.613691 GGATTTGCAACAAGCCATCAG 58.386 47.619 0.00 0.00 44.83 2.90
4314 4389 9.140286 CACAAATACTGAAGTCGATTTAAGAGA 57.860 33.333 11.78 0.27 0.00 3.10
4326 4401 6.109359 GTCCTCTATGCACAAATACTGAAGT 58.891 40.000 0.00 0.00 0.00 3.01
4330 4405 6.017605 GGAATGTCCTCTATGCACAAATACTG 60.018 42.308 0.00 0.00 32.53 2.74
4370 4445 2.224042 CCAAGAAAACTTTCACTGCCCC 60.224 50.000 5.07 0.00 39.61 5.80
4372 4447 4.590850 ATCCAAGAAAACTTTCACTGCC 57.409 40.909 5.07 0.00 39.61 4.85
4376 4451 6.811170 TGACACAAATCCAAGAAAACTTTCAC 59.189 34.615 5.07 0.00 39.61 3.18
4381 4456 5.652014 TGAGTGACACAAATCCAAGAAAACT 59.348 36.000 8.59 0.00 0.00 2.66
4383 4458 6.522625 TTGAGTGACACAAATCCAAGAAAA 57.477 33.333 8.59 0.00 0.00 2.29
4396 4471 8.984764 TGTTATATGTAGTGTTTTGAGTGACAC 58.015 33.333 0.00 0.00 44.93 3.67
4398 4473 8.656849 CCTGTTATATGTAGTGTTTTGAGTGAC 58.343 37.037 0.00 0.00 0.00 3.67
4425 4500 3.245371 TGGAGATGAAAAACTCAGGGCAT 60.245 43.478 0.00 0.00 37.52 4.40
4431 4506 8.102676 TCTGTCATTATGGAGATGAAAAACTCA 58.897 33.333 0.00 0.00 35.46 3.41
4432 4507 8.498054 TCTGTCATTATGGAGATGAAAAACTC 57.502 34.615 0.00 0.00 35.46 3.01
4434 4509 9.912634 TTTTCTGTCATTATGGAGATGAAAAAC 57.087 29.630 0.00 0.00 35.46 2.43
4439 4517 7.126268 TCTCCTTTTCTGTCATTATGGAGATGA 59.874 37.037 0.00 0.00 42.40 2.92
4440 4518 7.278135 TCTCCTTTTCTGTCATTATGGAGATG 58.722 38.462 0.00 0.00 42.40 2.90
4441 4519 7.443302 TCTCCTTTTCTGTCATTATGGAGAT 57.557 36.000 0.00 0.00 42.40 2.75
4461 4539 2.559440 CAGCTGCCACTAGATTTCTCC 58.441 52.381 0.00 0.00 0.00 3.71
4463 4541 2.035530 GCAGCTGCCACTAGATTTCT 57.964 50.000 28.76 0.00 34.31 2.52
4475 4553 2.124529 GTAGAAGGGGGCAGCTGC 60.125 66.667 30.88 30.88 41.14 5.25
4482 4560 1.830145 CGATGGTGGTAGAAGGGGG 59.170 63.158 0.00 0.00 0.00 5.40
4483 4561 1.146263 GCGATGGTGGTAGAAGGGG 59.854 63.158 0.00 0.00 0.00 4.79
4488 4566 2.426024 GTCTTGTAGCGATGGTGGTAGA 59.574 50.000 0.00 0.00 0.00 2.59
4513 4591 6.173339 ACTTGTTATCCATGTGAGTAACCAG 58.827 40.000 0.00 0.32 30.78 4.00
4535 4613 0.403271 AAGCATGGAGGTCAGCAACT 59.597 50.000 0.00 0.00 0.00 3.16
4543 4621 4.384647 GGTGAGATTAGAAAGCATGGAGGT 60.385 45.833 0.00 0.00 0.00 3.85
4547 4625 4.946157 ACAAGGTGAGATTAGAAAGCATGG 59.054 41.667 0.00 0.00 0.00 3.66
4568 4646 3.259625 TGATACCGACAAGATGGACAACA 59.740 43.478 0.00 0.00 0.00 3.33
4582 4660 0.253894 TCTGGACTCCGTGATACCGA 59.746 55.000 0.00 0.00 0.00 4.69
4584 4662 0.386113 GCTCTGGACTCCGTGATACC 59.614 60.000 0.00 0.00 0.00 2.73
4585 4663 1.394618 AGCTCTGGACTCCGTGATAC 58.605 55.000 0.00 0.00 0.00 2.24
4605 4683 4.222124 AGGATAAAGAGCAACGGATGTT 57.778 40.909 0.00 0.00 39.43 2.71
4611 4689 2.483877 TGTGCAAGGATAAAGAGCAACG 59.516 45.455 0.00 0.00 36.91 4.10
4612 4690 4.397417 AGATGTGCAAGGATAAAGAGCAAC 59.603 41.667 0.00 0.00 36.91 4.17
4616 4694 8.498054 TTCTAAAGATGTGCAAGGATAAAGAG 57.502 34.615 0.00 0.00 0.00 2.85
4620 4698 7.994425 TGTTTCTAAAGATGTGCAAGGATAA 57.006 32.000 0.00 0.00 0.00 1.75
4621 4699 8.461222 CAATGTTTCTAAAGATGTGCAAGGATA 58.539 33.333 0.00 0.00 0.00 2.59
4624 4702 6.680810 TCAATGTTTCTAAAGATGTGCAAGG 58.319 36.000 0.00 0.00 0.00 3.61
4647 4725 6.969828 AACCTAGAACATTTCTCGACAATC 57.030 37.500 0.00 0.00 41.14 2.67
4653 4731 6.276847 AGCAGATAACCTAGAACATTTCTCG 58.723 40.000 0.00 0.00 41.14 4.04
4663 4741 3.215151 CGTCCAGAGCAGATAACCTAGA 58.785 50.000 0.00 0.00 0.00 2.43
4686 4764 1.866483 TACTGCAGAGGGACCCCGTA 61.866 60.000 23.35 0.00 41.95 4.02
4688 4766 1.749334 GATACTGCAGAGGGACCCCG 61.749 65.000 23.35 0.00 41.95 5.73
4695 4773 2.391616 TGTGCTTGATACTGCAGAGG 57.608 50.000 23.35 0.00 40.06 3.69
4731 4809 2.427095 GCAGTTTATGGCCAAACTAGGG 59.573 50.000 19.99 10.97 44.86 3.53
4734 4812 2.491693 GCTGCAGTTTATGGCCAAACTA 59.508 45.455 19.99 7.40 44.86 2.24
4743 4821 3.084039 TGAAGAAGGGCTGCAGTTTATG 58.916 45.455 16.64 0.00 0.00 1.90
4747 4825 1.074405 TGATGAAGAAGGGCTGCAGTT 59.926 47.619 16.64 0.93 34.99 3.16
4748 4826 0.694771 TGATGAAGAAGGGCTGCAGT 59.305 50.000 16.64 0.00 34.99 4.40
4749 4827 1.093159 GTGATGAAGAAGGGCTGCAG 58.907 55.000 10.11 10.11 34.99 4.41
4761 4839 0.034186 GGTCCTGCCCATGTGATGAA 60.034 55.000 0.00 0.00 0.00 2.57
4764 4842 1.611419 CTGGTCCTGCCCATGTGAT 59.389 57.895 0.00 0.00 36.04 3.06
4765 4843 2.605607 CCTGGTCCTGCCCATGTGA 61.606 63.158 0.00 0.00 36.04 3.58
4768 4846 1.150081 GATCCTGGTCCTGCCCATG 59.850 63.158 0.00 0.00 36.04 3.66
4777 4855 5.351740 GCAGTAAAAAGTACAGATCCTGGTC 59.648 44.000 0.00 0.00 35.51 4.02
4780 4858 6.820656 AGATGCAGTAAAAAGTACAGATCCTG 59.179 38.462 0.00 0.00 37.52 3.86
4809 4887 6.166279 TGAAGTGTTATCGATCTCAAGCTTT 58.834 36.000 0.00 0.00 0.00 3.51
4910 4991 7.286546 TGAGTAGGTTTGAAACATCAATCCAAA 59.713 33.333 10.53 5.87 40.26 3.28
4923 5004 9.747898 AACCATTACATATTGAGTAGGTTTGAA 57.252 29.630 0.00 0.00 30.34 2.69
4926 5007 9.975218 AGAAACCATTACATATTGAGTAGGTTT 57.025 29.630 0.00 0.00 40.10 3.27
4932 5013 7.013655 GGCATGAGAAACCATTACATATTGAGT 59.986 37.037 0.00 0.00 0.00 3.41
4936 5017 6.376248 AGGGCATGAGAAACCATTACATATT 58.624 36.000 0.00 0.00 0.00 1.28
4941 5022 3.620488 TGAGGGCATGAGAAACCATTAC 58.380 45.455 0.00 0.00 0.00 1.89
4990 5079 4.260948 GCTTTGTCCTGTTCTTCTGTGAAG 60.261 45.833 1.23 1.23 0.00 3.02
5122 5215 3.846588 AGAGAATTCCTGGACAAGCCTTA 59.153 43.478 0.65 0.00 37.63 2.69
5233 5333 9.440784 TCAACATAAACACATCTAACGTTTTTC 57.559 29.630 5.91 0.00 34.78 2.29
5344 5562 6.392625 AGATTCTGCGTGTATACATACAGT 57.607 37.500 25.35 14.82 43.32 3.55
5345 5563 8.972262 ATAAGATTCTGCGTGTATACATACAG 57.028 34.615 22.69 22.69 43.32 2.74
5346 5564 9.191995 CAATAAGATTCTGCGTGTATACATACA 57.808 33.333 9.18 9.43 40.69 2.29
5347 5565 9.193133 ACAATAAGATTCTGCGTGTATACATAC 57.807 33.333 9.18 5.05 0.00 2.39
5351 5569 9.245962 AGTAACAATAAGATTCTGCGTGTATAC 57.754 33.333 0.00 0.00 0.00 1.47
5592 5823 4.960938 TCCCATGAGTATTTCCGAATCTG 58.039 43.478 0.00 0.00 0.00 2.90
5618 5864 5.831702 AATCTTTTAGAAGCCTGATGCAG 57.168 39.130 0.00 0.00 44.83 4.41
5630 5876 7.560796 ACCTCCAGAAGAGAAATCTTTTAGA 57.439 36.000 0.00 0.00 46.50 2.10
5647 5893 4.218417 CCAACCAAAAATCACTACCTCCAG 59.782 45.833 0.00 0.00 0.00 3.86
5686 5932 4.145052 GGTTCCCTTTTAGCCTGATATGG 58.855 47.826 0.00 0.00 0.00 2.74
5689 5935 4.108570 TCTGGTTCCCTTTTAGCCTGATA 58.891 43.478 0.00 0.00 0.00 2.15
5724 5970 5.282055 TGATTAGAACCCTGTCTGCTATG 57.718 43.478 0.00 0.00 0.00 2.23
5726 5972 3.133003 GCTGATTAGAACCCTGTCTGCTA 59.867 47.826 0.00 0.00 34.13 3.49
5730 5976 4.036518 AGATGCTGATTAGAACCCTGTCT 58.963 43.478 0.00 0.00 0.00 3.41
5731 5977 4.414337 AGATGCTGATTAGAACCCTGTC 57.586 45.455 0.00 0.00 0.00 3.51
5736 5982 8.341173 CAACAGAAATAGATGCTGATTAGAACC 58.659 37.037 0.00 0.00 33.94 3.62
5749 5995 4.210331 GGACATGGGCAACAGAAATAGAT 58.790 43.478 0.00 0.00 39.74 1.98
5750 5996 3.620488 GGACATGGGCAACAGAAATAGA 58.380 45.455 0.00 0.00 39.74 1.98
5752 5998 2.364632 CGGACATGGGCAACAGAAATA 58.635 47.619 0.00 0.00 39.74 1.40
5754 6000 1.523154 GCGGACATGGGCAACAGAAA 61.523 55.000 0.00 0.00 39.74 2.52
5763 6009 3.094062 ATCGTCTGGCGGACATGGG 62.094 63.158 25.12 9.73 44.70 4.00
5764 6010 1.884464 CATCGTCTGGCGGACATGG 60.884 63.158 25.12 10.08 44.70 3.66
5772 6018 2.125512 AACGCCTCATCGTCTGGC 60.126 61.111 0.00 0.00 42.46 4.85
5778 6024 1.135315 CCTTTGCAACGCCTCATCG 59.865 57.895 0.00 0.00 0.00 3.84
5845 6093 3.192212 GCTTGGGATTCTCAAGGAAACAG 59.808 47.826 24.20 2.01 41.21 3.16
5988 6243 0.761187 TCTCTGCTATGGACATGCCC 59.239 55.000 0.00 0.00 34.97 5.36
6024 6281 6.800543 TGACATCTCTAAATAGCAGAGTGAC 58.199 40.000 0.00 0.00 40.41 3.67
6025 6282 7.410120 TTGACATCTCTAAATAGCAGAGTGA 57.590 36.000 0.00 0.00 40.41 3.41
6086 6343 7.794349 GCTGTATAAAATGTCTAGAAATGACGC 59.206 37.037 0.00 0.00 37.26 5.19
6108 6367 8.806146 ACAAAGAAAATAATATGGACAAGCTGT 58.194 29.630 0.00 0.00 0.00 4.40
6109 6368 9.643693 AACAAAGAAAATAATATGGACAAGCTG 57.356 29.630 0.00 0.00 0.00 4.24
6142 6401 1.024271 CAATACCGGGACATGCCAAG 58.976 55.000 6.32 2.04 38.95 3.61
6155 6414 2.491693 TGGCAGCAGCTTTAACAATACC 59.508 45.455 0.00 0.00 41.70 2.73
6164 6423 2.629617 ACATTTTACTGGCAGCAGCTTT 59.370 40.909 15.89 0.00 41.70 3.51
6184 6443 6.183360 TGTTGTGACTTGATCTTTCTGGAAAC 60.183 38.462 0.00 0.00 0.00 2.78
6186 6445 5.436175 TGTTGTGACTTGATCTTTCTGGAA 58.564 37.500 0.00 0.00 0.00 3.53
6281 6544 6.037391 CAGCAAAGAAAATTTGTGTCCATGTT 59.963 34.615 0.00 0.00 0.00 2.71
6291 6554 5.629097 TGTTTGTGCAGCAAAGAAAATTTG 58.371 33.333 12.69 0.00 46.50 2.32
6324 6587 5.668558 AAACGTAGCAGAGTTAACAAAGG 57.331 39.130 8.61 0.00 0.00 3.11
6325 6588 6.643770 TCCTAAACGTAGCAGAGTTAACAAAG 59.356 38.462 8.61 0.00 0.00 2.77
6327 6590 6.088016 TCCTAAACGTAGCAGAGTTAACAA 57.912 37.500 8.61 0.00 0.00 2.83
6328 6591 5.336213 CCTCCTAAACGTAGCAGAGTTAACA 60.336 44.000 8.61 0.00 0.00 2.41
6330 6593 4.768968 ACCTCCTAAACGTAGCAGAGTTAA 59.231 41.667 0.00 0.00 0.00 2.01
6331 6594 4.338879 ACCTCCTAAACGTAGCAGAGTTA 58.661 43.478 0.00 0.00 0.00 2.24
6332 6595 3.163467 ACCTCCTAAACGTAGCAGAGTT 58.837 45.455 0.00 0.00 0.00 3.01
6333 6596 2.805194 ACCTCCTAAACGTAGCAGAGT 58.195 47.619 0.00 0.00 0.00 3.24
6336 6599 3.000727 CCAAACCTCCTAAACGTAGCAG 58.999 50.000 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.