Multiple sequence alignment - TraesCS3D01G039200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G039200 chr3D 100.000 2992 0 0 2747 5738 14845344 14848335 0.000000e+00 5526.0
1 TraesCS3D01G039200 chr3D 100.000 1561 0 0 861 2421 14843458 14845018 0.000000e+00 2883.0
2 TraesCS3D01G039200 chr3D 94.635 671 35 1 5068 5738 184299461 184298792 0.000000e+00 1038.0
3 TraesCS3D01G039200 chr3D 100.000 488 0 0 1 488 14842598 14843085 0.000000e+00 902.0
4 TraesCS3D01G039200 chr3D 90.078 514 45 5 5018 5528 602998477 602997967 0.000000e+00 662.0
5 TraesCS3D01G039200 chr3D 99.177 243 0 1 861 1101 14842843 14843085 2.450000e-118 436.0
6 TraesCS3D01G039200 chr3D 99.177 243 0 1 246 488 14843458 14843698 2.450000e-118 436.0
7 TraesCS3D01G039200 chr3D 91.447 152 10 2 4933 5083 110520614 110520465 7.540000e-49 206.0
8 TraesCS3D01G039200 chr3D 96.610 118 4 0 4074 4191 107671080 107670963 4.540000e-46 196.0
9 TraesCS3D01G039200 chr3D 96.610 118 4 0 4074 4191 445035133 445035250 4.540000e-46 196.0
10 TraesCS3D01G039200 chr3B 92.243 838 42 7 861 1685 22053675 22054502 0.000000e+00 1166.0
11 TraesCS3D01G039200 chr3B 92.732 743 28 7 4190 4926 22056266 22056988 0.000000e+00 1050.0
12 TraesCS3D01G039200 chr3B 92.008 513 37 3 3002 3510 22055151 22055663 0.000000e+00 717.0
13 TraesCS3D01G039200 chr3B 93.679 443 28 0 1685 2127 22054547 22054989 0.000000e+00 664.0
14 TraesCS3D01G039200 chr3B 93.878 294 16 2 3783 4075 22055975 22056267 5.280000e-120 442.0
15 TraesCS3D01G039200 chr3B 85.748 421 31 15 81 488 22053511 22053915 8.890000e-113 418.0
16 TraesCS3D01G039200 chr3B 95.076 264 3 2 2747 3001 242601751 242601489 1.920000e-109 407.0
17 TraesCS3D01G039200 chr3B 95.417 240 11 0 3545 3784 22055662 22055901 3.240000e-102 383.0
18 TraesCS3D01G039200 chr3B 93.827 243 4 3 2190 2421 473182583 473182825 7.070000e-94 355.0
19 TraesCS3D01G039200 chr3B 92.276 246 8 2 2186 2421 242602094 242601850 7.120000e-89 339.0
20 TraesCS3D01G039200 chr3B 93.548 62 4 0 2129 2190 22055096 22055157 6.120000e-15 93.5
21 TraesCS3D01G039200 chr5D 94.690 678 35 1 5061 5738 37316217 37315541 0.000000e+00 1051.0
22 TraesCS3D01G039200 chr5D 94.559 680 33 3 5061 5738 84403745 84404422 0.000000e+00 1048.0
23 TraesCS3D01G039200 chr5D 89.398 764 71 7 4982 5738 413883870 413883110 0.000000e+00 953.0
24 TraesCS3D01G039200 chr5D 90.506 158 11 3 4933 5088 323950954 323950799 7.540000e-49 206.0
25 TraesCS3D01G039200 chr2D 94.551 679 36 1 5060 5738 184139517 184138840 0.000000e+00 1048.0
26 TraesCS3D01G039200 chr2D 96.694 121 4 0 4074 4194 12692357 12692237 9.750000e-48 202.0
27 TraesCS3D01G039200 chr2D 94.531 128 7 0 4067 4194 443245924 443246051 1.260000e-46 198.0
28 TraesCS3D01G039200 chr7D 94.412 680 38 0 5059 5738 567870925 567871604 0.000000e+00 1046.0
29 TraesCS3D01G039200 chr7D 87.007 608 71 6 4933 5535 621515532 621516136 0.000000e+00 678.0
30 TraesCS3D01G039200 chr4D 93.962 679 40 1 5060 5738 199929406 199930083 0.000000e+00 1026.0
31 TraesCS3D01G039200 chr4D 97.458 118 3 0 4074 4191 367720770 367720887 9.750000e-48 202.0
32 TraesCS3D01G039200 chr4D 89.873 158 12 3 4933 5088 352293252 352293097 3.510000e-47 200.0
33 TraesCS3D01G039200 chr4D 96.639 119 4 0 4073 4191 55352559 55352441 1.260000e-46 198.0
34 TraesCS3D01G039200 chr4D 95.798 119 5 0 4073 4191 25627742 25627860 5.870000e-45 193.0
35 TraesCS3D01G039200 chr4D 95.798 119 5 0 4074 4192 367720542 367720660 5.870000e-45 193.0
36 TraesCS3D01G039200 chr4D 95.763 118 5 0 4074 4191 27156420 27156537 2.110000e-44 191.0
37 TraesCS3D01G039200 chr4D 94.958 119 6 0 4073 4191 337412404 337412286 2.730000e-43 187.0
38 TraesCS3D01G039200 chr4D 94.340 53 2 1 2943 2994 287557549 287557497 4.770000e-11 80.5
39 TraesCS3D01G039200 chr1D 93.971 680 36 4 5061 5738 111204869 111204193 0.000000e+00 1024.0
40 TraesCS3D01G039200 chr1D 93.814 679 42 0 5060 5738 148404160 148403482 0.000000e+00 1022.0
41 TraesCS3D01G039200 chr1D 96.596 235 4 2 2191 2421 275660863 275661097 2.510000e-103 387.0
42 TraesCS3D01G039200 chr1D 95.902 122 3 2 4071 4190 484564931 484565052 4.540000e-46 196.0
43 TraesCS3D01G039200 chr3A 92.747 648 43 2 1550 2193 21376808 21376161 0.000000e+00 933.0
44 TraesCS3D01G039200 chr3A 90.463 713 47 13 4192 4903 21375161 21374469 0.000000e+00 920.0
45 TraesCS3D01G039200 chr3A 82.547 848 93 26 3002 3834 21376170 21375363 0.000000e+00 695.0
46 TraesCS3D01G039200 chr3A 88.489 556 37 11 967 1513 21377420 21376883 0.000000e+00 647.0
47 TraesCS3D01G039200 chr3A 89.931 288 28 1 3783 4069 21364460 21364173 2.530000e-98 370.0
48 TraesCS3D01G039200 chr3A 88.976 254 14 6 81 334 21377880 21377641 9.340000e-78 302.0
49 TraesCS3D01G039200 chr3A 93.956 182 11 0 3498 3679 21364848 21364667 5.660000e-70 276.0
50 TraesCS3D01G039200 chr3A 97.037 135 2 2 354 488 21377420 21377288 5.780000e-55 226.0
51 TraesCS3D01G039200 chr3A 97.701 87 2 0 861 947 21377729 21377643 3.580000e-32 150.0
52 TraesCS3D01G039200 chr3A 92.405 79 6 0 1 79 21380906 21380828 4.700000e-21 113.0
53 TraesCS3D01G039200 chr3A 97.917 48 1 0 3737 3784 21364664 21364617 3.680000e-12 84.2
54 TraesCS3D01G039200 chr3A 97.368 38 1 0 4895 4932 21337938 21337901 1.330000e-06 65.8
55 TraesCS3D01G039200 chr7A 89.807 569 54 4 4933 5499 687797532 687798098 0.000000e+00 726.0
56 TraesCS3D01G039200 chr7A 98.122 213 1 1 2192 2401 384423106 384422894 9.080000e-98 368.0
57 TraesCS3D01G039200 chr7A 89.831 236 5 3 2760 2977 384422395 384422161 9.410000e-73 285.0
58 TraesCS3D01G039200 chr7A 89.873 158 13 3 4933 5087 538586962 538587119 3.510000e-47 200.0
59 TraesCS3D01G039200 chr1B 88.364 593 59 8 4940 5528 444874637 444875223 0.000000e+00 704.0
60 TraesCS3D01G039200 chr1B 93.939 132 7 1 4065 4196 17743533 17743403 1.260000e-46 198.0
61 TraesCS3D01G039200 chr1B 95.122 123 6 0 4072 4194 8855986 8855864 1.630000e-45 195.0
62 TraesCS3D01G039200 chr1B 86.740 181 6 7 2191 2356 143630478 143630655 9.820000e-43 185.0
63 TraesCS3D01G039200 chr1B 82.222 180 17 6 2189 2356 255500707 255500883 2.160000e-29 141.0
64 TraesCS3D01G039200 chr1B 90.000 80 8 0 3833 3912 432326826 432326905 2.830000e-18 104.0
65 TraesCS3D01G039200 chr1B 86.000 100 5 8 2191 2288 222296500 222296592 1.320000e-16 99.0
66 TraesCS3D01G039200 chr1B 96.154 52 2 0 2943 2994 388768982 388768931 1.020000e-12 86.1
67 TraesCS3D01G039200 chr7B 85.406 603 65 14 4931 5528 730320300 730320884 6.360000e-169 604.0
68 TraesCS3D01G039200 chr7B 95.817 263 2 1 2747 3000 699377577 699377315 3.200000e-112 416.0
69 TraesCS3D01G039200 chr7B 95.437 263 2 2 2747 3000 327636156 327636417 1.490000e-110 411.0
70 TraesCS3D01G039200 chr7B 94.215 242 3 2 2191 2421 699378321 699378080 5.470000e-95 359.0
71 TraesCS3D01G039200 chr7B 93.416 243 4 4 2191 2421 327635815 327636057 3.290000e-92 350.0
72 TraesCS3D01G039200 chr7B 95.312 128 5 1 4065 4192 589467034 589467160 9.750000e-48 202.0
73 TraesCS3D01G039200 chr7B 97.436 117 3 0 4075 4191 433515251 433515367 3.510000e-47 200.0
74 TraesCS3D01G039200 chr7B 95.238 126 5 1 4067 4191 81425114 81424989 1.260000e-46 198.0
75 TraesCS3D01G039200 chr7B 86.740 181 6 7 2191 2356 559546221 559546044 9.820000e-43 185.0
76 TraesCS3D01G039200 chr7B 87.597 129 12 2 2874 3000 346673276 346673402 4.630000e-31 147.0
77 TraesCS3D01G039200 chr7B 79.253 241 25 16 2191 2407 34837110 34836871 1.670000e-30 145.0
78 TraesCS3D01G039200 chr7B 81.065 169 20 10 2191 2356 664034368 664034209 2.170000e-24 124.0
79 TraesCS3D01G039200 chr7B 91.781 73 6 0 3833 3905 612315835 612315763 1.020000e-17 102.0
80 TraesCS3D01G039200 chrUn 96.063 254 8 2 2747 3000 298462618 298462869 4.140000e-111 412.0
81 TraesCS3D01G039200 chrUn 93.416 243 5 3 2190 2421 275836453 275836695 3.290000e-92 350.0
82 TraesCS3D01G039200 chrUn 89.668 271 6 4 2747 3000 316955078 316955343 5.540000e-85 326.0
83 TraesCS3D01G039200 chrUn 91.322 242 2 4 2191 2421 316954743 316954976 4.320000e-81 313.0
84 TraesCS3D01G039200 chrUn 98.462 65 0 1 2191 2254 387574336 387574400 4.700000e-21 113.0
85 TraesCS3D01G039200 chr1A 95.094 265 3 2 2747 3002 173974973 173975236 5.350000e-110 409.0
86 TraesCS3D01G039200 chr1A 93.388 242 5 3 2191 2421 173974633 173974874 1.180000e-91 348.0
87 TraesCS3D01G039200 chr5B 97.845 232 4 1 2191 2421 170585182 170585413 3.220000e-107 399.0
88 TraesCS3D01G039200 chr5B 93.827 243 4 3 2190 2421 138782194 138781952 7.070000e-94 355.0
89 TraesCS3D01G039200 chr5B 97.458 118 3 0 4074 4191 646478164 646478047 9.750000e-48 202.0
90 TraesCS3D01G039200 chr5B 95.775 71 3 0 2351 2421 384593093 384593023 1.310000e-21 115.0
91 TraesCS3D01G039200 chr2B 97.436 234 3 2 2191 2421 756642051 756642284 4.170000e-106 396.0
92 TraesCS3D01G039200 chr2B 93.392 227 12 3 2747 2972 756642404 756642628 3.310000e-87 333.0
93 TraesCS3D01G039200 chr2B 98.319 119 2 0 4074 4192 518048442 518048324 5.830000e-50 209.0
94 TraesCS3D01G039200 chr4B 93.985 266 7 1 2747 3003 12504292 12504027 1.500000e-105 394.0
95 TraesCS3D01G039200 chr4B 93.802 242 4 2 2191 2421 12504629 12504388 2.540000e-93 353.0
96 TraesCS3D01G039200 chr4B 93.798 129 8 0 4064 4192 183611217 183611089 1.630000e-45 195.0
97 TraesCS3D01G039200 chr4B 94.309 123 7 0 4073 4195 551690879 551691001 7.590000e-44 189.0
98 TraesCS3D01G039200 chr4B 86.400 125 6 6 2191 2304 566963543 566963419 6.040000e-25 126.0
99 TraesCS3D01G039200 chr4B 84.746 118 8 8 2190 2304 119278047 119277937 6.080000e-20 110.0
100 TraesCS3D01G039200 chr4B 96.154 52 2 0 2943 2994 207089654 207089603 1.020000e-12 86.1
101 TraesCS3D01G039200 chr4B 96.154 52 2 0 2943 2994 256336630 256336681 1.020000e-12 86.1
102 TraesCS3D01G039200 chr4B 96.154 52 2 0 2943 2994 291852273 291852222 1.020000e-12 86.1
103 TraesCS3D01G039200 chr4B 94.340 53 2 1 2943 2995 482658597 482658648 4.770000e-11 80.5
104 TraesCS3D01G039200 chr6B 93.802 242 4 3 2191 2421 141020411 141020170 2.540000e-93 353.0
105 TraesCS3D01G039200 chr4A 94.828 232 3 2 2191 2421 714686262 714686039 2.540000e-93 353.0
106 TraesCS3D01G039200 chr4A 95.089 224 2 1 2747 2961 647197420 647197197 1.530000e-90 344.0
107 TraesCS3D01G039200 chr4A 89.668 271 6 4 2747 3000 714655266 714655001 5.540000e-85 326.0
108 TraesCS3D01G039200 chr5A 92.523 214 9 4 2191 2404 621755250 621755456 3.360000e-77 300.0
109 TraesCS3D01G039200 chr5A 89.583 240 5 3 2747 2970 621755538 621755773 2.620000e-73 287.0
110 TraesCS3D01G039200 chr6D 95.868 121 4 1 4074 4194 17055120 17055001 1.630000e-45 195.0
111 TraesCS3D01G039200 chr6D 95.868 121 3 1 4076 4194 178852201 178852321 1.630000e-45 195.0
112 TraesCS3D01G039200 chr6D 94.355 124 7 0 4069 4192 4235937 4235814 2.110000e-44 191.0
113 TraesCS3D01G039200 chr6D 87.293 181 5 7 2191 2356 255019470 255019647 2.110000e-44 191.0
114 TraesCS3D01G039200 chr6D 94.167 120 7 0 4074 4193 450262714 450262833 3.530000e-42 183.0
115 TraesCS3D01G039200 chr6D 94.068 118 6 1 4074 4191 49866679 49866563 1.640000e-40 178.0
116 TraesCS3D01G039200 chr6D 93.333 120 8 0 4073 4192 128316102 128316221 1.640000e-40 178.0
117 TraesCS3D01G039200 chr6D 93.277 119 8 0 4074 4192 136469663 136469545 5.910000e-40 176.0
118 TraesCS3D01G039200 chr6D 93.913 115 7 0 4074 4188 227487980 227488094 2.130000e-39 174.0
119 TraesCS3D01G039200 chr6D 91.935 124 10 0 4071 4194 469113677 469113800 2.130000e-39 174.0
120 TraesCS3D01G039200 chr6D 91.667 120 3 3 2241 2356 368363872 368363988 5.950000e-35 159.0
121 TraesCS3D01G039200 chr2A 93.130 131 9 0 4064 4194 628673036 628673166 5.870000e-45 193.0
122 TraesCS3D01G039200 chr2A 80.603 232 17 12 2191 2413 614583629 614583841 2.770000e-33 154.0
123 TraesCS3D01G039200 chr2A 89.873 79 8 0 1 79 637228448 637228370 1.020000e-17 102.0
124 TraesCS3D01G039200 chr6A 87.293 181 5 7 2191 2356 75914535 75914358 2.110000e-44 191.0
125 TraesCS3D01G039200 chr6A 91.667 120 3 3 2241 2356 509277645 509277761 5.950000e-35 159.0
126 TraesCS3D01G039200 chr6A 90.769 65 5 1 2191 2254 564389744 564389680 1.020000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G039200 chr3D 14842598 14848335 5737 False 2036.6000 5526 99.670800 1 5738 5 chr3D.!!$F2 5737
1 TraesCS3D01G039200 chr3D 184298792 184299461 669 True 1038.0000 1038 94.635000 5068 5738 1 chr3D.!!$R3 670
2 TraesCS3D01G039200 chr3D 602997967 602998477 510 True 662.0000 662 90.078000 5018 5528 1 chr3D.!!$R4 510
3 TraesCS3D01G039200 chr3B 22053511 22056988 3477 False 616.6875 1166 92.406625 81 4926 8 chr3B.!!$F2 4845
4 TraesCS3D01G039200 chr3B 242601489 242602094 605 True 373.0000 407 93.676000 2186 3001 2 chr3B.!!$R1 815
5 TraesCS3D01G039200 chr5D 37315541 37316217 676 True 1051.0000 1051 94.690000 5061 5738 1 chr5D.!!$R1 677
6 TraesCS3D01G039200 chr5D 84403745 84404422 677 False 1048.0000 1048 94.559000 5061 5738 1 chr5D.!!$F1 677
7 TraesCS3D01G039200 chr5D 413883110 413883870 760 True 953.0000 953 89.398000 4982 5738 1 chr5D.!!$R3 756
8 TraesCS3D01G039200 chr2D 184138840 184139517 677 True 1048.0000 1048 94.551000 5060 5738 1 chr2D.!!$R2 678
9 TraesCS3D01G039200 chr7D 567870925 567871604 679 False 1046.0000 1046 94.412000 5059 5738 1 chr7D.!!$F1 679
10 TraesCS3D01G039200 chr7D 621515532 621516136 604 False 678.0000 678 87.007000 4933 5535 1 chr7D.!!$F2 602
11 TraesCS3D01G039200 chr4D 199929406 199930083 677 False 1026.0000 1026 93.962000 5060 5738 1 chr4D.!!$F3 678
12 TraesCS3D01G039200 chr1D 111204193 111204869 676 True 1024.0000 1024 93.971000 5061 5738 1 chr1D.!!$R1 677
13 TraesCS3D01G039200 chr1D 148403482 148404160 678 True 1022.0000 1022 93.814000 5060 5738 1 chr1D.!!$R2 678
14 TraesCS3D01G039200 chr3A 21374469 21380906 6437 True 498.2500 933 91.295625 1 4903 8 chr3A.!!$R3 4902
15 TraesCS3D01G039200 chr3A 21364173 21364848 675 True 243.4000 370 93.934667 3498 4069 3 chr3A.!!$R2 571
16 TraesCS3D01G039200 chr7A 687797532 687798098 566 False 726.0000 726 89.807000 4933 5499 1 chr7A.!!$F2 566
17 TraesCS3D01G039200 chr7A 384422161 384423106 945 True 326.5000 368 93.976500 2192 2977 2 chr7A.!!$R1 785
18 TraesCS3D01G039200 chr1B 444874637 444875223 586 False 704.0000 704 88.364000 4940 5528 1 chr1B.!!$F5 588
19 TraesCS3D01G039200 chr7B 730320300 730320884 584 False 604.0000 604 85.406000 4931 5528 1 chr7B.!!$F4 597
20 TraesCS3D01G039200 chr7B 699377315 699378321 1006 True 387.5000 416 95.016000 2191 3000 2 chr7B.!!$R6 809
21 TraesCS3D01G039200 chr7B 327635815 327636417 602 False 380.5000 411 94.426500 2191 3000 2 chr7B.!!$F5 809
22 TraesCS3D01G039200 chrUn 316954743 316955343 600 False 319.5000 326 90.495000 2191 3000 2 chrUn.!!$F4 809
23 TraesCS3D01G039200 chr1A 173974633 173975236 603 False 378.5000 409 94.241000 2191 3002 2 chr1A.!!$F1 811
24 TraesCS3D01G039200 chr2B 756642051 756642628 577 False 364.5000 396 95.414000 2191 2972 2 chr2B.!!$F1 781
25 TraesCS3D01G039200 chr4B 12504027 12504629 602 True 373.5000 394 93.893500 2191 3003 2 chr4B.!!$R6 812
26 TraesCS3D01G039200 chr5A 621755250 621755773 523 False 293.5000 300 91.053000 2191 2970 2 chr5A.!!$F1 779

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 3162 0.955905 AACACGTGGCCCAATTGTAC 59.044 50.000 21.57 0.0 0.00 2.90 F
933 4116 0.105964 TTCATATCCCAACGCCCGAG 59.894 55.000 0.00 0.0 0.00 4.63 F
935 4118 0.105964 CATATCCCAACGCCCGAGAA 59.894 55.000 0.00 0.0 0.00 2.87 F
988 4171 0.179097 GTAGAGCCCAGAAGGAAGCG 60.179 60.000 0.00 0.0 38.24 4.68 F
1186 4371 0.456221 AGTCTGCAGTTATCCCGTCG 59.544 55.000 14.67 0.0 0.00 5.12 F
1235 4420 1.290203 CGCGATTAGTGGCAGTGATT 58.710 50.000 0.00 0.0 0.00 2.57 F
1415 4614 1.293062 AGGATGGGTCAAGCATCTGT 58.707 50.000 0.00 0.0 0.00 3.41 F
1866 5164 2.472695 TGCGACTGCCTTTATGTTCT 57.527 45.000 0.00 0.0 41.78 3.01 F
3248 7267 2.622942 TGCCGAAAGCTGTCATTTTCTT 59.377 40.909 4.41 0.0 44.23 2.52 F
3806 7991 1.751351 TCGATTGCAGACTACTCCCAG 59.249 52.381 0.00 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1500 4702 0.814457 GTGGGCACACAAGACACAAA 59.186 50.000 15.95 0.0 46.90 2.83 R
1751 5046 1.269051 GGAACTGGTTTTGTTCAGCGG 60.269 52.381 8.54 0.0 43.84 5.52 R
2851 6861 1.738350 CGACTAGTCGCTCTTTCTGGA 59.262 52.381 30.44 0.0 46.50 3.86 R
3049 7068 3.640967 TGCAGTAGAAATTGGCAAACCTT 59.359 39.130 3.01 0.0 36.63 3.50 R
3222 7241 1.159713 TGACAGCTTTCGGCACAGTG 61.160 55.000 0.00 0.0 44.79 3.66 R
3228 7247 2.982470 CAAGAAAATGACAGCTTTCGGC 59.018 45.455 0.00 0.0 36.78 5.54 R
3427 7450 3.593096 TCTGCAAGCAGACATCACTAAG 58.407 45.455 20.00 0.0 46.80 2.18 R
3531 7554 1.272369 TGACCATATGTGCTGCCCAAA 60.272 47.619 1.24 0.0 0.00 3.28 R
4084 8313 0.036306 GAGGGACAAGCTTTTCCGGA 59.964 55.000 22.30 0.0 32.00 5.14 R
5710 9953 0.108585 AACAGGCCGAAAGAAGCTCA 59.891 50.000 0.00 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 4.548494 TGCAAAGACATGTGCATTGTAAG 58.452 39.130 1.15 0.00 45.52 2.34
58 59 5.618056 AAGACATGTGCATTGTAAGAGTG 57.382 39.130 1.15 0.00 0.00 3.51
66 67 4.994852 GTGCATTGTAAGAGTGGACTACAA 59.005 41.667 0.00 0.00 35.49 2.41
73 74 1.978580 AGAGTGGACTACAACCTTGGG 59.021 52.381 0.00 0.00 0.00 4.12
79 80 2.514803 GACTACAACCTTGGGCAACAT 58.485 47.619 0.00 0.00 39.74 2.71
85 3032 1.914764 CCTTGGGCAACATTGGGCT 60.915 57.895 3.16 0.00 39.74 5.19
120 3067 2.049767 GGGTAACACCGGCCCATTG 61.050 63.158 0.00 0.00 39.83 2.82
141 3088 1.209128 CAGCGTGACTCGAAGTGTTT 58.791 50.000 0.22 0.00 42.86 2.83
142 3089 1.593006 CAGCGTGACTCGAAGTGTTTT 59.407 47.619 0.22 0.00 42.86 2.43
143 3090 2.030457 CAGCGTGACTCGAAGTGTTTTT 59.970 45.455 0.22 0.00 42.86 1.94
214 3162 0.955905 AACACGTGGCCCAATTGTAC 59.044 50.000 21.57 0.00 0.00 2.90
254 3202 3.691342 CCCGTCTCAGCCGTTGGA 61.691 66.667 0.00 0.00 0.00 3.53
316 3264 1.495584 CGTTCATATCCCAACGCCCG 61.496 60.000 0.00 0.00 39.01 6.13
348 3313 2.572209 AAAAAGGGATTTCCGTCCGA 57.428 45.000 0.00 0.00 41.52 4.55
349 3314 2.572209 AAAAGGGATTTCCGTCCGAA 57.428 45.000 0.00 0.00 41.52 4.30
350 3315 2.572209 AAAGGGATTTCCGTCCGAAA 57.428 45.000 0.00 0.00 44.49 3.46
351 3316 2.572209 AAGGGATTTCCGTCCGAAAA 57.428 45.000 0.00 0.00 43.61 2.29
352 3317 2.572209 AGGGATTTCCGTCCGAAAAA 57.428 45.000 0.00 0.00 43.61 1.94
449 3632 4.959596 GCGCTCCTCCTCATCGCC 62.960 72.222 0.00 0.00 39.91 5.54
450 3633 3.531207 CGCTCCTCCTCATCGCCA 61.531 66.667 0.00 0.00 0.00 5.69
451 3634 2.107953 GCTCCTCCTCATCGCCAC 59.892 66.667 0.00 0.00 0.00 5.01
452 3635 2.818132 CTCCTCCTCATCGCCACC 59.182 66.667 0.00 0.00 0.00 4.61
453 3636 1.760086 CTCCTCCTCATCGCCACCT 60.760 63.158 0.00 0.00 0.00 4.00
454 3637 2.025767 CTCCTCCTCATCGCCACCTG 62.026 65.000 0.00 0.00 0.00 4.00
455 3638 2.202987 CTCCTCATCGCCACCTGC 60.203 66.667 0.00 0.00 0.00 4.85
878 4061 3.669354 AGCCGTTGGATCTCGAATC 57.331 52.632 0.00 0.00 0.00 2.52
879 4062 0.249073 AGCCGTTGGATCTCGAATCG 60.249 55.000 0.00 0.00 0.00 3.34
880 4063 1.215655 GCCGTTGGATCTCGAATCGG 61.216 60.000 1.76 0.00 39.52 4.18
881 4064 0.384309 CCGTTGGATCTCGAATCGGA 59.616 55.000 1.76 0.00 38.96 4.55
882 4065 1.478137 CGTTGGATCTCGAATCGGAC 58.522 55.000 1.76 0.00 0.00 4.79
883 4066 1.478137 GTTGGATCTCGAATCGGACG 58.522 55.000 1.76 0.00 0.00 4.79
884 4067 1.065102 GTTGGATCTCGAATCGGACGA 59.935 52.381 1.76 0.00 38.11 4.20
885 4068 0.661552 TGGATCTCGAATCGGACGAC 59.338 55.000 1.76 0.00 35.88 4.34
886 4069 0.945813 GGATCTCGAATCGGACGACT 59.054 55.000 1.76 0.00 35.88 4.18
887 4070 1.334239 GGATCTCGAATCGGACGACTG 60.334 57.143 1.76 0.00 35.88 3.51
888 4071 1.331138 GATCTCGAATCGGACGACTGT 59.669 52.381 1.76 0.00 35.88 3.55
889 4072 0.725686 TCTCGAATCGGACGACTGTC 59.274 55.000 1.76 0.00 44.72 3.51
897 4080 4.477975 GACGACTGTCCGAGGGCG 62.478 72.222 1.55 0.00 39.30 6.13
900 4083 4.148825 GACTGTCCGAGGGCGCAT 62.149 66.667 10.83 0.00 35.83 4.73
901 4084 2.758327 ACTGTCCGAGGGCGCATA 60.758 61.111 10.83 0.00 35.83 3.14
902 4085 2.279517 CTGTCCGAGGGCGCATAC 60.280 66.667 10.83 0.00 35.83 2.39
903 4086 4.201679 TGTCCGAGGGCGCATACG 62.202 66.667 10.83 11.08 44.07 3.06
904 4087 4.203076 GTCCGAGGGCGCATACGT 62.203 66.667 10.83 0.00 42.83 3.57
905 4088 4.201679 TCCGAGGGCGCATACGTG 62.202 66.667 10.83 5.73 42.83 4.49
908 4091 4.530857 GAGGGCGCATACGTGGCT 62.531 66.667 10.83 0.00 46.85 4.75
909 4092 4.530857 AGGGCGCATACGTGGCTC 62.531 66.667 10.83 4.30 46.85 4.70
919 4102 4.777781 CGTGGCTCGTCGTTCATA 57.222 55.556 0.00 0.00 34.52 2.15
920 4103 3.251817 CGTGGCTCGTCGTTCATAT 57.748 52.632 0.00 0.00 34.52 1.78
921 4104 1.121240 CGTGGCTCGTCGTTCATATC 58.879 55.000 0.00 0.00 34.52 1.63
922 4105 1.488527 GTGGCTCGTCGTTCATATCC 58.511 55.000 0.00 0.00 0.00 2.59
923 4106 0.387929 TGGCTCGTCGTTCATATCCC 59.612 55.000 0.00 0.00 0.00 3.85
924 4107 0.387929 GGCTCGTCGTTCATATCCCA 59.612 55.000 0.00 0.00 0.00 4.37
925 4108 1.202486 GGCTCGTCGTTCATATCCCAA 60.202 52.381 0.00 0.00 0.00 4.12
926 4109 1.859080 GCTCGTCGTTCATATCCCAAC 59.141 52.381 0.00 0.00 0.00 3.77
927 4110 2.117137 CTCGTCGTTCATATCCCAACG 58.883 52.381 5.21 5.21 45.43 4.10
928 4111 0.575390 CGTCGTTCATATCCCAACGC 59.425 55.000 6.33 2.73 44.06 4.84
929 4112 0.935196 GTCGTTCATATCCCAACGCC 59.065 55.000 6.33 0.00 44.06 5.68
930 4113 0.179067 TCGTTCATATCCCAACGCCC 60.179 55.000 6.33 0.00 44.06 6.13
931 4114 1.495584 CGTTCATATCCCAACGCCCG 61.496 60.000 0.00 0.00 39.01 6.13
932 4115 0.179067 GTTCATATCCCAACGCCCGA 60.179 55.000 0.00 0.00 0.00 5.14
933 4116 0.105964 TTCATATCCCAACGCCCGAG 59.894 55.000 0.00 0.00 0.00 4.63
934 4117 0.757561 TCATATCCCAACGCCCGAGA 60.758 55.000 0.00 0.00 0.00 4.04
935 4118 0.105964 CATATCCCAACGCCCGAGAA 59.894 55.000 0.00 0.00 0.00 2.87
936 4119 0.393077 ATATCCCAACGCCCGAGAAG 59.607 55.000 0.00 0.00 0.00 2.85
937 4120 0.974010 TATCCCAACGCCCGAGAAGT 60.974 55.000 0.00 0.00 0.00 3.01
938 4121 0.974010 ATCCCAACGCCCGAGAAGTA 60.974 55.000 0.00 0.00 0.00 2.24
939 4122 1.186917 TCCCAACGCCCGAGAAGTAA 61.187 55.000 0.00 0.00 0.00 2.24
940 4123 0.320946 CCCAACGCCCGAGAAGTAAA 60.321 55.000 0.00 0.00 0.00 2.01
941 4124 1.515081 CCAACGCCCGAGAAGTAAAA 58.485 50.000 0.00 0.00 0.00 1.52
942 4125 1.874872 CCAACGCCCGAGAAGTAAAAA 59.125 47.619 0.00 0.00 0.00 1.94
961 4144 2.572209 AAAAAGGGATTTCCGTCCGA 57.428 45.000 0.00 0.00 41.52 4.55
962 4145 2.572209 AAAAGGGATTTCCGTCCGAA 57.428 45.000 0.00 0.00 41.52 4.30
963 4146 2.572209 AAAGGGATTTCCGTCCGAAA 57.428 45.000 0.00 0.00 44.49 3.46
964 4147 2.572209 AAGGGATTTCCGTCCGAAAA 57.428 45.000 0.00 0.00 43.61 2.29
965 4148 2.572209 AGGGATTTCCGTCCGAAAAA 57.428 45.000 0.00 0.00 43.61 1.94
985 4168 4.724279 AAAAAGTAGAGCCCAGAAGGAA 57.276 40.909 0.00 0.00 38.24 3.36
986 4169 3.990959 AAAGTAGAGCCCAGAAGGAAG 57.009 47.619 0.00 0.00 38.24 3.46
987 4170 1.199615 AGTAGAGCCCAGAAGGAAGC 58.800 55.000 0.00 0.00 38.24 3.86
988 4171 0.179097 GTAGAGCCCAGAAGGAAGCG 60.179 60.000 0.00 0.00 38.24 4.68
989 4172 1.330655 TAGAGCCCAGAAGGAAGCGG 61.331 60.000 0.00 0.00 38.24 5.52
990 4173 2.607750 AGCCCAGAAGGAAGCGGA 60.608 61.111 0.00 0.00 38.24 5.54
991 4174 2.124942 GCCCAGAAGGAAGCGGAG 60.125 66.667 0.00 0.00 38.24 4.63
1008 4191 2.959071 GCTCGAGCGATGCACTCC 60.959 66.667 23.61 0.00 0.00 3.85
1009 4192 2.804167 CTCGAGCGATGCACTCCT 59.196 61.111 0.00 0.00 0.00 3.69
1010 4193 1.588403 CTCGAGCGATGCACTCCTG 60.588 63.158 0.00 0.00 0.00 3.86
1011 4194 2.584418 CGAGCGATGCACTCCTGG 60.584 66.667 0.00 0.00 0.00 4.45
1012 4195 2.202987 GAGCGATGCACTCCTGGG 60.203 66.667 0.00 0.00 0.00 4.45
1013 4196 3.746949 GAGCGATGCACTCCTGGGG 62.747 68.421 0.00 0.00 0.00 4.96
1014 4197 4.864334 GCGATGCACTCCTGGGGG 62.864 72.222 0.00 0.00 0.00 5.40
1015 4198 3.083349 CGATGCACTCCTGGGGGA 61.083 66.667 0.00 0.00 39.70 4.81
1016 4199 2.592308 GATGCACTCCTGGGGGAC 59.408 66.667 0.00 0.00 36.57 4.46
1059 4242 4.959596 GCGGCGCTCCTCCTCATC 62.960 72.222 26.86 0.00 0.00 2.92
1060 4243 4.637489 CGGCGCTCCTCCTCATCG 62.637 72.222 7.64 0.00 0.00 3.84
1061 4244 4.959596 GGCGCTCCTCCTCATCGC 62.960 72.222 7.64 0.00 44.39 4.58
1151 4334 4.465446 TCTGCCCCTCCTCTCCCG 62.465 72.222 0.00 0.00 0.00 5.14
1163 4348 1.134371 CCTCTCCCGGCCTTTCTTTAG 60.134 57.143 0.00 0.00 0.00 1.85
1183 4368 2.682893 GCAGTCTGCAGTTATCCCG 58.317 57.895 20.16 0.00 44.26 5.14
1186 4371 0.456221 AGTCTGCAGTTATCCCGTCG 59.544 55.000 14.67 0.00 0.00 5.12
1232 4417 1.323534 GTTACGCGATTAGTGGCAGTG 59.676 52.381 15.93 0.00 33.90 3.66
1235 4420 1.290203 CGCGATTAGTGGCAGTGATT 58.710 50.000 0.00 0.00 0.00 2.57
1245 4430 4.319177 AGTGGCAGTGATTTCTTCAGTAC 58.681 43.478 0.00 0.00 35.76 2.73
1273 4458 5.462034 AAATTTCGCGATTCTCTGAAGAG 57.538 39.130 10.88 0.58 43.36 2.85
1285 4470 2.000803 TCTGAAGAGTCCTGGTAGGGA 58.999 52.381 0.00 0.00 35.59 4.20
1347 4546 2.083835 CTGACCGGTTCTGTGTCCGT 62.084 60.000 9.42 0.00 44.51 4.69
1415 4614 1.293062 AGGATGGGTCAAGCATCTGT 58.707 50.000 0.00 0.00 0.00 3.41
1500 4702 3.541242 TTTGGGTTCAGATTCCATGGT 57.459 42.857 12.58 0.00 0.00 3.55
1660 4910 6.220726 ACAAGGTTTGTGCTTTTACTTCAT 57.779 33.333 0.00 0.00 43.48 2.57
1865 5163 3.552604 TTTGCGACTGCCTTTATGTTC 57.447 42.857 0.00 0.00 41.78 3.18
1866 5164 2.472695 TGCGACTGCCTTTATGTTCT 57.527 45.000 0.00 0.00 41.78 3.01
1903 5201 2.709213 TCATTCATCGACACAATGCCA 58.291 42.857 7.60 0.00 0.00 4.92
1951 5249 4.588899 TGCCATGTTACTTCTATTGCAGT 58.411 39.130 0.00 0.00 0.00 4.40
2033 5331 6.111382 TGCAAATTTGGAATCACTTTTCACA 58.889 32.000 19.47 1.29 0.00 3.58
2058 5356 5.304101 TGGAACACAAAGCAGGTGATATTTT 59.696 36.000 9.05 0.00 39.53 1.82
2064 5362 7.039504 ACACAAAGCAGGTGATATTTTCATTCT 60.040 33.333 9.05 0.00 39.53 2.40
2091 5389 6.382869 AGGATGTGCAATGCTAAACTATTC 57.617 37.500 6.82 0.00 0.00 1.75
2095 5393 7.442364 GGATGTGCAATGCTAAACTATTCTCTA 59.558 37.037 6.82 0.00 0.00 2.43
2112 5410 9.190858 CTATTCTCTAAATGTGTAGATGCTCAC 57.809 37.037 0.00 0.00 35.43 3.51
2182 5585 9.060347 ACAAGTGCATATCAGAAGTAATATTGG 57.940 33.333 0.00 0.00 0.00 3.16
2851 6861 4.744570 TCAATTTAAGTGAGTCGCTCGAT 58.255 39.130 6.68 0.00 32.35 3.59
3029 7048 9.630098 AAGTGTTATATGCAAAAATTGAGTCAG 57.370 29.630 0.00 0.00 0.00 3.51
3049 7068 9.383519 GAGTCAGTATTGAATGAAGATTTACCA 57.616 33.333 0.00 0.00 34.49 3.25
3079 7098 6.649155 TGCCAATTTCTACTGCAGTATCTTA 58.351 36.000 26.22 12.70 0.00 2.10
3161 7180 4.060205 TGAGGCTTTACGGTGTTAAGTTC 58.940 43.478 0.00 0.00 0.00 3.01
3222 7241 5.046231 ACCTTTTCATCTAGTCCTTGGTCTC 60.046 44.000 0.00 0.00 0.00 3.36
3228 7247 3.157881 TCTAGTCCTTGGTCTCACTGTG 58.842 50.000 0.17 0.17 0.00 3.66
3248 7267 2.622942 TGCCGAAAGCTGTCATTTTCTT 59.377 40.909 4.41 0.00 44.23 2.52
3422 7445 8.403236 AGTTTTTCTAATGAAGCTTTACGTTGT 58.597 29.630 0.00 0.00 33.28 3.32
3427 7450 7.349711 TCTAATGAAGCTTTACGTTGTCAAAC 58.650 34.615 0.00 0.00 0.00 2.93
3434 7457 5.813672 AGCTTTACGTTGTCAAACTTAGTGA 59.186 36.000 0.00 0.00 33.87 3.41
3524 7547 3.684788 CCGTCCTACTGTCAATCCTTTTG 59.315 47.826 0.00 0.00 0.00 2.44
3531 7554 7.505585 TCCTACTGTCAATCCTTTTGTTTCAAT 59.494 33.333 0.00 0.00 0.00 2.57
3680 7706 3.350219 ACAGGTAAGCCATGTTACTGG 57.650 47.619 6.27 0.00 39.45 4.00
3806 7991 1.751351 TCGATTGCAGACTACTCCCAG 59.249 52.381 0.00 0.00 0.00 4.45
3837 8022 7.724305 TTCAGTTGACATTGTTAGTTACTCC 57.276 36.000 0.00 0.00 0.00 3.85
3839 8024 5.411669 CAGTTGACATTGTTAGTTACTCCCC 59.588 44.000 0.00 0.00 0.00 4.81
3841 8026 4.172807 TGACATTGTTAGTTACTCCCCCT 58.827 43.478 0.00 0.00 0.00 4.79
3859 8045 5.074115 CCCCCTGTAACAAAATGTAAGACA 58.926 41.667 0.00 0.00 0.00 3.41
4045 8272 7.171337 CCAGGTATGCCAATATTTGCATTTAAC 59.829 37.037 26.51 19.52 45.52 2.01
4050 8277 5.188555 TGCCAATATTTGCATTTAACCCTGA 59.811 36.000 10.00 0.00 31.31 3.86
4069 8298 7.793036 ACCCTGATCTACATTTTTCTACTACC 58.207 38.462 0.00 0.00 0.00 3.18
4078 8307 9.968870 CTACATTTTTCTACTACCATCTACTCC 57.031 37.037 0.00 0.00 0.00 3.85
4079 8308 7.793036 ACATTTTTCTACTACCATCTACTCCC 58.207 38.462 0.00 0.00 0.00 4.30
4080 8309 7.624077 ACATTTTTCTACTACCATCTACTCCCT 59.376 37.037 0.00 0.00 0.00 4.20
4081 8310 7.657023 TTTTTCTACTACCATCTACTCCCTC 57.343 40.000 0.00 0.00 0.00 4.30
4082 8311 4.997545 TCTACTACCATCTACTCCCTCC 57.002 50.000 0.00 0.00 0.00 4.30
4083 8312 2.660670 ACTACCATCTACTCCCTCCG 57.339 55.000 0.00 0.00 0.00 4.63
4084 8313 1.851653 ACTACCATCTACTCCCTCCGT 59.148 52.381 0.00 0.00 0.00 4.69
4085 8314 2.158638 ACTACCATCTACTCCCTCCGTC 60.159 54.545 0.00 0.00 0.00 4.79
4086 8315 0.106116 ACCATCTACTCCCTCCGTCC 60.106 60.000 0.00 0.00 0.00 4.79
4087 8316 1.173444 CCATCTACTCCCTCCGTCCG 61.173 65.000 0.00 0.00 0.00 4.79
4088 8317 1.150992 ATCTACTCCCTCCGTCCGG 59.849 63.158 0.00 0.00 0.00 5.14
4089 8318 1.351080 ATCTACTCCCTCCGTCCGGA 61.351 60.000 0.00 0.00 42.90 5.14
4090 8319 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
4091 8320 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
4092 8321 0.251742 TACTCCCTCCGTCCGGAAAA 60.252 55.000 5.23 0.00 44.66 2.29
4093 8322 1.218316 CTCCCTCCGTCCGGAAAAG 59.782 63.158 5.23 3.59 44.66 2.27
4094 8323 2.436115 CCCTCCGTCCGGAAAAGC 60.436 66.667 5.23 0.00 44.66 3.51
4095 8324 2.663196 CCTCCGTCCGGAAAAGCT 59.337 61.111 5.23 0.00 44.66 3.74
4096 8325 1.003718 CCTCCGTCCGGAAAAGCTT 60.004 57.895 5.23 0.00 44.66 3.74
4097 8326 1.298859 CCTCCGTCCGGAAAAGCTTG 61.299 60.000 5.23 0.00 44.66 4.01
4098 8327 0.602905 CTCCGTCCGGAAAAGCTTGT 60.603 55.000 5.23 0.00 44.66 3.16
4099 8328 0.601841 TCCGTCCGGAAAAGCTTGTC 60.602 55.000 5.23 8.23 42.05 3.18
4100 8329 1.574702 CCGTCCGGAAAAGCTTGTCC 61.575 60.000 24.00 24.00 37.50 4.02
4101 8330 1.574702 CGTCCGGAAAAGCTTGTCCC 61.575 60.000 26.94 13.97 0.00 4.46
4102 8331 0.250770 GTCCGGAAAAGCTTGTCCCT 60.251 55.000 26.94 0.00 0.00 4.20
4103 8332 0.036306 TCCGGAAAAGCTTGTCCCTC 59.964 55.000 26.94 5.77 0.00 4.30
4104 8333 0.250727 CCGGAAAAGCTTGTCCCTCA 60.251 55.000 26.94 0.00 0.00 3.86
4105 8334 1.604604 CGGAAAAGCTTGTCCCTCAA 58.395 50.000 26.94 0.00 34.61 3.02
4106 8335 1.953686 CGGAAAAGCTTGTCCCTCAAA 59.046 47.619 26.94 0.00 35.48 2.69
4107 8336 2.558359 CGGAAAAGCTTGTCCCTCAAAT 59.442 45.455 26.94 0.00 35.48 2.32
4108 8337 3.612479 CGGAAAAGCTTGTCCCTCAAATG 60.612 47.826 26.94 9.69 35.48 2.32
4109 8338 3.306294 GGAAAAGCTTGTCCCTCAAATGG 60.306 47.826 23.49 0.00 35.48 3.16
4110 8339 2.978156 AAGCTTGTCCCTCAAATGGA 57.022 45.000 0.00 0.00 35.48 3.41
4111 8340 3.463048 AAGCTTGTCCCTCAAATGGAT 57.537 42.857 0.00 0.00 35.48 3.41
4112 8341 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
4113 8342 2.042162 AGCTTGTCCCTCAAATGGATGT 59.958 45.455 0.00 0.00 35.48 3.06
4114 8343 3.266772 AGCTTGTCCCTCAAATGGATGTA 59.733 43.478 0.00 0.00 35.48 2.29
4115 8344 4.079558 AGCTTGTCCCTCAAATGGATGTAT 60.080 41.667 0.00 0.00 35.48 2.29
4116 8345 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
4117 8346 5.688807 CTTGTCCCTCAAATGGATGTATCT 58.311 41.667 0.00 0.00 35.48 1.98
4118 8347 6.688922 GCTTGTCCCTCAAATGGATGTATCTA 60.689 42.308 0.00 0.00 35.48 1.98
4119 8348 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
4120 8349 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
4121 8350 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
4122 8351 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
4123 8352 4.999950 CCTCAAATGGATGTATCTAGCACC 59.000 45.833 0.00 0.00 0.00 5.01
4124 8353 5.455183 CCTCAAATGGATGTATCTAGCACCA 60.455 44.000 0.00 0.00 0.00 4.17
4125 8354 6.000246 TCAAATGGATGTATCTAGCACCAA 58.000 37.500 0.00 0.00 0.00 3.67
4126 8355 6.057533 TCAAATGGATGTATCTAGCACCAAG 58.942 40.000 0.00 0.00 0.00 3.61
4127 8356 5.636903 AATGGATGTATCTAGCACCAAGT 57.363 39.130 0.00 0.00 0.00 3.16
4128 8357 5.636903 ATGGATGTATCTAGCACCAAGTT 57.363 39.130 0.00 0.00 0.00 2.66
4129 8358 6.747414 ATGGATGTATCTAGCACCAAGTTA 57.253 37.500 0.00 0.00 0.00 2.24
4130 8359 6.161855 TGGATGTATCTAGCACCAAGTTAG 57.838 41.667 0.00 0.00 32.79 2.34
4131 8360 5.661312 TGGATGTATCTAGCACCAAGTTAGT 59.339 40.000 0.00 0.00 33.25 2.24
4132 8361 5.986135 GGATGTATCTAGCACCAAGTTAGTG 59.014 44.000 0.00 0.00 38.30 2.74
4144 8373 5.986135 CACCAAGTTAGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
4145 8374 5.661312 ACCAAGTTAGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
4146 8375 6.327626 ACCAAGTTAGTGCTAGATACATCCAT 59.672 38.462 0.00 0.00 0.00 3.41
4147 8376 7.147479 ACCAAGTTAGTGCTAGATACATCCATT 60.147 37.037 0.00 0.00 0.00 3.16
4148 8377 7.716998 CCAAGTTAGTGCTAGATACATCCATTT 59.283 37.037 0.00 0.00 0.00 2.32
4149 8378 8.554528 CAAGTTAGTGCTAGATACATCCATTTG 58.445 37.037 0.00 0.00 0.00 2.32
4150 8379 8.023021 AGTTAGTGCTAGATACATCCATTTGA 57.977 34.615 0.00 0.00 0.00 2.69
4151 8380 8.147058 AGTTAGTGCTAGATACATCCATTTGAG 58.853 37.037 0.00 0.00 0.00 3.02
4152 8381 5.862845 AGTGCTAGATACATCCATTTGAGG 58.137 41.667 0.00 0.00 0.00 3.86
4153 8382 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
4154 8383 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
4155 8384 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
4156 8385 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
4157 8386 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
4158 8387 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
4159 8388 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
4160 8389 1.753073 CATCCATTTGAGGGACAAGCC 59.247 52.381 0.00 0.00 39.77 4.35
4161 8390 1.075601 TCCATTTGAGGGACAAGCCT 58.924 50.000 0.00 0.00 39.77 4.58
4162 8391 1.180029 CCATTTGAGGGACAAGCCTG 58.820 55.000 0.00 0.00 39.77 4.85
4163 8392 1.180029 CATTTGAGGGACAAGCCTGG 58.820 55.000 0.00 0.00 39.77 4.45
4164 8393 0.040204 ATTTGAGGGACAAGCCTGGG 59.960 55.000 0.00 0.00 39.77 4.45
4165 8394 1.065410 TTTGAGGGACAAGCCTGGGA 61.065 55.000 0.00 0.00 39.77 4.37
4166 8395 1.779061 TTGAGGGACAAGCCTGGGAC 61.779 60.000 0.00 0.00 36.66 4.46
4167 8396 2.121963 AGGGACAAGCCTGGGACA 60.122 61.111 0.00 0.00 36.66 4.02
4168 8397 1.774217 AGGGACAAGCCTGGGACAA 60.774 57.895 0.00 0.00 38.70 3.18
4169 8398 1.303643 GGGACAAGCCTGGGACAAG 60.304 63.158 0.00 0.00 38.70 3.16
4176 8405 3.894257 GCCTGGGACAAGCTTTTTC 57.106 52.632 0.00 0.00 43.48 2.29
4177 8406 0.039165 GCCTGGGACAAGCTTTTTCG 60.039 55.000 0.00 0.00 43.48 3.46
4178 8407 0.598065 CCTGGGACAAGCTTTTTCGG 59.402 55.000 0.00 0.00 38.70 4.30
4179 8408 1.604604 CTGGGACAAGCTTTTTCGGA 58.395 50.000 0.00 0.00 38.70 4.55
4180 8409 1.266989 CTGGGACAAGCTTTTTCGGAC 59.733 52.381 0.00 0.00 38.70 4.79
4181 8410 0.237498 GGGACAAGCTTTTTCGGACG 59.763 55.000 0.00 0.00 0.00 4.79
4182 8411 0.237498 GGACAAGCTTTTTCGGACGG 59.763 55.000 0.00 0.00 0.00 4.79
4183 8412 1.223187 GACAAGCTTTTTCGGACGGA 58.777 50.000 0.00 0.00 0.00 4.69
4184 8413 1.194772 GACAAGCTTTTTCGGACGGAG 59.805 52.381 0.00 0.00 0.00 4.63
4185 8414 0.517316 CAAGCTTTTTCGGACGGAGG 59.483 55.000 0.00 0.00 0.00 4.30
4186 8415 0.605589 AAGCTTTTTCGGACGGAGGG 60.606 55.000 0.00 0.00 0.00 4.30
4187 8416 1.004200 GCTTTTTCGGACGGAGGGA 60.004 57.895 0.00 0.00 0.00 4.20
4188 8417 1.019805 GCTTTTTCGGACGGAGGGAG 61.020 60.000 0.00 0.00 0.00 4.30
4189 8418 0.320697 CTTTTTCGGACGGAGGGAGT 59.679 55.000 0.00 0.00 0.00 3.85
4190 8419 1.547372 CTTTTTCGGACGGAGGGAGTA 59.453 52.381 0.00 0.00 0.00 2.59
4199 8428 3.498334 GACGGAGGGAGTATATTGTCCT 58.502 50.000 3.68 0.00 32.90 3.85
4237 8466 7.414436 TGTCTGTAATTAAGCACTGTTTCAAC 58.586 34.615 0.00 0.00 0.00 3.18
4238 8467 7.066404 TGTCTGTAATTAAGCACTGTTTCAACA 59.934 33.333 0.00 0.00 37.37 3.33
4241 8471 7.144661 TGTAATTAAGCACTGTTTCAACATGG 58.855 34.615 0.00 0.00 38.41 3.66
4244 8474 1.610522 AGCACTGTTTCAACATGGAGC 59.389 47.619 0.00 0.00 38.41 4.70
4251 8481 4.661222 TGTTTCAACATGGAGCATTCCTA 58.339 39.130 0.00 0.00 37.96 2.94
4339 8569 5.211174 TCATCACTCAGAATATCTGCCTG 57.789 43.478 2.48 1.19 43.95 4.85
4371 8601 2.035066 AGAAGTGCTGCAAAACACCATC 59.965 45.455 2.77 9.02 37.51 3.51
4526 8756 3.135530 GTGAAGAGCAAGTATCCCCTGAT 59.864 47.826 0.00 0.00 34.87 2.90
4569 8799 7.706179 CACTCTTTGTCCATTTTGTTACATGTT 59.294 33.333 2.30 0.00 0.00 2.71
4578 8808 6.527722 CCATTTTGTTACATGTTCTGGATTCG 59.472 38.462 2.30 0.00 0.00 3.34
4855 9085 1.047801 TTGCTGCACTCAGGACAGTA 58.952 50.000 0.00 0.00 40.49 2.74
4856 9086 0.605083 TGCTGCACTCAGGACAGTAG 59.395 55.000 0.00 0.00 40.65 2.57
4858 9088 1.403514 GCTGCACTCAGGACAGTAGTC 60.404 57.143 0.00 0.00 44.21 2.59
4907 9142 7.393515 TCGTTCACAGTGTGGATATATATAGCT 59.606 37.037 22.79 0.00 33.87 3.32
4928 9163 7.870509 AGCTTATTATTGATCAAGCAGTCAA 57.129 32.000 14.54 2.68 44.59 3.18
4929 9164 8.461249 AGCTTATTATTGATCAAGCAGTCAAT 57.539 30.769 14.54 8.35 44.59 2.57
4930 9165 9.565090 AGCTTATTATTGATCAAGCAGTCAATA 57.435 29.630 14.54 7.52 44.59 1.90
4960 9195 4.208746 TCATGGTGATGCATAGCAATGAA 58.791 39.130 14.31 3.13 43.62 2.57
4964 9199 3.382546 GGTGATGCATAGCAATGAAAGGT 59.617 43.478 0.00 0.00 43.62 3.50
4967 9202 4.891168 TGATGCATAGCAATGAAAGGTGAT 59.109 37.500 0.00 0.00 43.62 3.06
5000 9237 2.633488 GTACCCTCGTAGACCGTAAGT 58.367 52.381 0.00 0.00 37.94 2.24
5133 9375 4.513318 TCACGTTTTCTGTCATGCATGTAA 59.487 37.500 25.43 14.10 0.00 2.41
5136 9378 5.858049 ACGTTTTCTGTCATGCATGTAAATG 59.142 36.000 25.43 21.42 0.00 2.32
5181 9423 4.100035 TCAAGATAGTCATACCTGTGCTGG 59.900 45.833 0.00 0.00 0.00 4.85
5203 9445 4.274459 GGCATAGAAGTGTTCCATGACATC 59.726 45.833 0.00 0.00 36.88 3.06
5333 9575 1.575244 GTTAAGTTATCGGGTCCGGC 58.425 55.000 9.68 0.00 40.25 6.13
5710 9953 3.850100 TTGGGCCCAATTGCAGCCT 62.850 57.895 34.07 0.00 46.31 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.392138 GGTTGTAGTCCACTCTTACAATGC 59.608 45.833 0.38 0.00 33.90 3.56
54 55 1.610886 GCCCAAGGTTGTAGTCCACTC 60.611 57.143 0.00 0.00 0.00 3.51
58 59 1.244816 GTTGCCCAAGGTTGTAGTCC 58.755 55.000 0.00 0.00 0.00 3.85
66 67 2.216331 GCCCAATGTTGCCCAAGGT 61.216 57.895 0.00 0.00 0.00 3.50
73 74 1.257055 TTAGCCCAGCCCAATGTTGC 61.257 55.000 0.00 0.00 0.00 4.17
79 80 2.043046 GCCATTAGCCCAGCCCAA 60.043 61.111 0.00 0.00 34.35 4.12
120 3067 0.317938 ACACTTCGAGTCACGCTGTC 60.318 55.000 0.00 0.00 42.26 3.51
141 3088 2.353406 GGGTCACGCTACTGCTAGAAAA 60.353 50.000 0.00 0.00 36.97 2.29
142 3089 1.203994 GGGTCACGCTACTGCTAGAAA 59.796 52.381 0.00 0.00 36.97 2.52
143 3090 0.815734 GGGTCACGCTACTGCTAGAA 59.184 55.000 0.00 0.00 36.97 2.10
145 3092 1.064296 CGGGTCACGCTACTGCTAG 59.936 63.158 0.00 0.00 36.97 3.42
146 3093 0.961857 TTCGGGTCACGCTACTGCTA 60.962 55.000 0.00 0.00 43.86 3.49
148 3095 1.805945 CTTCGGGTCACGCTACTGC 60.806 63.158 0.00 0.00 43.86 4.40
149 3096 0.732880 CACTTCGGGTCACGCTACTG 60.733 60.000 0.00 0.00 43.86 2.74
150 3097 1.177256 ACACTTCGGGTCACGCTACT 61.177 55.000 0.00 0.00 43.86 2.57
151 3098 1.007336 CACACTTCGGGTCACGCTAC 61.007 60.000 0.00 0.00 43.86 3.58
152 3099 1.287815 CACACTTCGGGTCACGCTA 59.712 57.895 0.00 0.00 43.86 4.26
153 3100 2.029073 CACACTTCGGGTCACGCT 59.971 61.111 0.00 0.00 43.86 5.07
154 3101 2.981977 TTCCACACTTCGGGTCACGC 62.982 60.000 0.00 0.00 43.86 5.34
156 3103 1.804748 GAATTCCACACTTCGGGTCAC 59.195 52.381 0.00 0.00 0.00 3.67
157 3104 1.418264 TGAATTCCACACTTCGGGTCA 59.582 47.619 2.27 0.00 0.00 4.02
161 3108 3.403038 AGAACTGAATTCCACACTTCGG 58.597 45.455 2.27 0.00 38.16 4.30
239 3187 0.526524 GAGATCCAACGGCTGAGACG 60.527 60.000 5.97 5.97 41.40 4.18
254 3202 1.331138 GACAGTCGTCCGATTCGAGAT 59.669 52.381 7.83 0.00 37.99 2.75
351 3316 4.657013 CTTCCTTCTGGGCTCTACTTTTT 58.343 43.478 0.00 0.00 34.39 1.94
352 3317 3.560239 GCTTCCTTCTGGGCTCTACTTTT 60.560 47.826 0.00 0.00 34.39 2.27
353 3318 2.026729 GCTTCCTTCTGGGCTCTACTTT 60.027 50.000 0.00 0.00 34.39 2.66
354 3319 1.557371 GCTTCCTTCTGGGCTCTACTT 59.443 52.381 0.00 0.00 34.39 2.24
355 3320 1.199615 GCTTCCTTCTGGGCTCTACT 58.800 55.000 0.00 0.00 34.39 2.57
356 3321 0.179097 CGCTTCCTTCTGGGCTCTAC 60.179 60.000 0.00 0.00 34.39 2.59
860 4043 0.249073 CGATTCGAGATCCAACGGCT 60.249 55.000 0.00 0.00 0.00 5.52
861 4044 1.215655 CCGATTCGAGATCCAACGGC 61.216 60.000 7.83 0.00 33.03 5.68
862 4045 0.384309 TCCGATTCGAGATCCAACGG 59.616 55.000 7.83 0.00 40.16 4.44
863 4046 1.478137 GTCCGATTCGAGATCCAACG 58.522 55.000 7.83 0.00 0.00 4.10
864 4047 1.065102 TCGTCCGATTCGAGATCCAAC 59.935 52.381 7.83 0.00 33.38 3.77
865 4048 1.065102 GTCGTCCGATTCGAGATCCAA 59.935 52.381 7.83 0.00 37.99 3.53
866 4049 0.661552 GTCGTCCGATTCGAGATCCA 59.338 55.000 7.83 0.00 37.99 3.41
867 4050 0.945813 AGTCGTCCGATTCGAGATCC 59.054 55.000 7.83 0.00 37.99 3.36
868 4051 1.331138 ACAGTCGTCCGATTCGAGATC 59.669 52.381 7.83 0.00 37.99 2.75
869 4052 1.331138 GACAGTCGTCCGATTCGAGAT 59.669 52.381 7.83 0.00 37.99 2.75
870 4053 0.725686 GACAGTCGTCCGATTCGAGA 59.274 55.000 7.83 0.27 37.99 4.04
871 4054 3.221834 GACAGTCGTCCGATTCGAG 57.778 57.895 7.83 0.00 37.99 4.04
880 4063 4.477975 CGCCCTCGGACAGTCGTC 62.478 72.222 0.00 0.00 41.80 4.20
883 4066 2.782222 TATGCGCCCTCGGACAGTC 61.782 63.158 4.18 0.00 39.29 3.51
884 4067 2.758327 TATGCGCCCTCGGACAGT 60.758 61.111 4.18 0.00 39.29 3.55
885 4068 2.279517 GTATGCGCCCTCGGACAG 60.280 66.667 4.18 0.00 39.29 3.51
886 4069 4.201679 CGTATGCGCCCTCGGACA 62.202 66.667 4.18 0.00 39.29 4.02
887 4070 4.203076 ACGTATGCGCCCTCGGAC 62.203 66.667 4.18 0.00 42.83 4.79
888 4071 4.201679 CACGTATGCGCCCTCGGA 62.202 66.667 4.18 0.00 42.83 4.55
891 4074 4.530857 AGCCACGTATGCGCCCTC 62.531 66.667 4.18 0.00 42.83 4.30
892 4075 4.530857 GAGCCACGTATGCGCCCT 62.531 66.667 4.18 0.00 42.83 5.19
903 4086 1.488527 GGATATGAACGACGAGCCAC 58.511 55.000 0.00 0.00 0.00 5.01
904 4087 0.387929 GGGATATGAACGACGAGCCA 59.612 55.000 0.00 0.00 0.00 4.75
905 4088 0.387929 TGGGATATGAACGACGAGCC 59.612 55.000 0.00 0.00 0.00 4.70
906 4089 1.859080 GTTGGGATATGAACGACGAGC 59.141 52.381 0.00 0.00 0.00 5.03
907 4090 2.117137 CGTTGGGATATGAACGACGAG 58.883 52.381 0.00 0.00 46.19 4.18
908 4091 1.799917 GCGTTGGGATATGAACGACGA 60.800 52.381 0.00 0.00 46.19 4.20
909 4092 0.575390 GCGTTGGGATATGAACGACG 59.425 55.000 12.95 9.67 46.19 5.12
910 4093 0.935196 GGCGTTGGGATATGAACGAC 59.065 55.000 12.95 7.97 46.19 4.34
911 4094 0.179067 GGGCGTTGGGATATGAACGA 60.179 55.000 12.95 0.00 46.19 3.85
912 4095 1.495584 CGGGCGTTGGGATATGAACG 61.496 60.000 0.00 0.00 46.07 3.95
913 4096 0.179067 TCGGGCGTTGGGATATGAAC 60.179 55.000 0.00 0.00 0.00 3.18
914 4097 0.105964 CTCGGGCGTTGGGATATGAA 59.894 55.000 0.00 0.00 0.00 2.57
915 4098 0.757561 TCTCGGGCGTTGGGATATGA 60.758 55.000 0.00 0.00 0.00 2.15
916 4099 0.105964 TTCTCGGGCGTTGGGATATG 59.894 55.000 0.00 0.00 0.00 1.78
917 4100 0.393077 CTTCTCGGGCGTTGGGATAT 59.607 55.000 0.00 0.00 0.00 1.63
918 4101 0.974010 ACTTCTCGGGCGTTGGGATA 60.974 55.000 0.00 0.00 0.00 2.59
919 4102 0.974010 TACTTCTCGGGCGTTGGGAT 60.974 55.000 0.00 0.00 0.00 3.85
920 4103 1.186917 TTACTTCTCGGGCGTTGGGA 61.187 55.000 0.00 0.00 0.00 4.37
921 4104 0.320946 TTTACTTCTCGGGCGTTGGG 60.321 55.000 0.00 0.00 0.00 4.12
922 4105 1.515081 TTTTACTTCTCGGGCGTTGG 58.485 50.000 0.00 0.00 0.00 3.77
942 4125 2.572209 TCGGACGGAAATCCCTTTTT 57.428 45.000 0.00 0.00 35.03 1.94
943 4126 2.572209 TTCGGACGGAAATCCCTTTT 57.428 45.000 0.00 0.00 35.03 2.27
944 4127 2.572209 TTTCGGACGGAAATCCCTTT 57.428 45.000 4.21 0.00 39.67 3.11
945 4128 2.572209 TTTTCGGACGGAAATCCCTT 57.428 45.000 8.79 0.00 43.82 3.95
946 4129 2.572209 TTTTTCGGACGGAAATCCCT 57.428 45.000 8.79 0.00 43.82 4.20
964 4147 4.657013 CTTCCTTCTGGGCTCTACTTTTT 58.343 43.478 0.00 0.00 34.39 1.94
965 4148 3.560239 GCTTCCTTCTGGGCTCTACTTTT 60.560 47.826 0.00 0.00 34.39 2.27
966 4149 2.026729 GCTTCCTTCTGGGCTCTACTTT 60.027 50.000 0.00 0.00 34.39 2.66
967 4150 1.557371 GCTTCCTTCTGGGCTCTACTT 59.443 52.381 0.00 0.00 34.39 2.24
968 4151 1.199615 GCTTCCTTCTGGGCTCTACT 58.800 55.000 0.00 0.00 34.39 2.57
969 4152 0.179097 CGCTTCCTTCTGGGCTCTAC 60.179 60.000 0.00 0.00 34.39 2.59
970 4153 1.330655 CCGCTTCCTTCTGGGCTCTA 61.331 60.000 0.00 0.00 34.39 2.43
971 4154 2.664081 CCGCTTCCTTCTGGGCTCT 61.664 63.158 0.00 0.00 34.39 4.09
972 4155 2.124942 CCGCTTCCTTCTGGGCTC 60.125 66.667 0.00 0.00 34.39 4.70
973 4156 2.607750 TCCGCTTCCTTCTGGGCT 60.608 61.111 0.00 0.00 34.39 5.19
974 4157 2.124942 CTCCGCTTCCTTCTGGGC 60.125 66.667 0.00 0.00 34.39 5.36
975 4158 2.124942 GCTCCGCTTCCTTCTGGG 60.125 66.667 0.00 0.00 0.00 4.45
976 4159 1.153469 GAGCTCCGCTTCCTTCTGG 60.153 63.158 0.87 0.00 39.88 3.86
977 4160 1.518133 CGAGCTCCGCTTCCTTCTG 60.518 63.158 8.47 0.00 39.88 3.02
978 4161 1.662438 CTCGAGCTCCGCTTCCTTCT 61.662 60.000 8.47 0.00 39.88 2.85
979 4162 1.226831 CTCGAGCTCCGCTTCCTTC 60.227 63.158 8.47 0.00 39.88 3.46
980 4163 2.888863 CTCGAGCTCCGCTTCCTT 59.111 61.111 8.47 0.00 39.88 3.36
981 4164 3.832492 GCTCGAGCTCCGCTTCCT 61.832 66.667 29.88 0.00 39.88 3.36
983 4166 3.477224 ATCGCTCGAGCTCCGCTTC 62.477 63.158 32.88 4.10 39.88 3.86
984 4167 3.522731 ATCGCTCGAGCTCCGCTT 61.523 61.111 32.88 9.90 39.88 4.68
985 4168 4.263209 CATCGCTCGAGCTCCGCT 62.263 66.667 32.88 8.54 43.88 5.52
987 4170 4.559229 TGCATCGCTCGAGCTCCG 62.559 66.667 32.88 21.34 39.32 4.63
988 4171 2.959071 GTGCATCGCTCGAGCTCC 60.959 66.667 32.88 18.57 39.32 4.70
989 4172 1.943693 GAGTGCATCGCTCGAGCTC 60.944 63.158 32.88 18.86 39.32 4.09
990 4173 2.103934 GAGTGCATCGCTCGAGCT 59.896 61.111 32.88 14.73 39.32 4.09
991 4174 2.959071 GGAGTGCATCGCTCGAGC 60.959 66.667 27.64 27.64 41.37 5.03
992 4175 1.588403 CAGGAGTGCATCGCTCGAG 60.588 63.158 8.45 8.45 41.37 4.04
993 4176 2.491621 CAGGAGTGCATCGCTCGA 59.508 61.111 0.00 0.00 41.37 4.04
994 4177 2.584418 CCAGGAGTGCATCGCTCG 60.584 66.667 0.00 0.00 41.37 5.03
995 4178 2.202987 CCCAGGAGTGCATCGCTC 60.203 66.667 0.00 0.00 39.93 5.03
996 4179 3.790437 CCCCAGGAGTGCATCGCT 61.790 66.667 0.00 0.00 0.00 4.93
997 4180 4.864334 CCCCCAGGAGTGCATCGC 62.864 72.222 0.00 0.00 33.47 4.58
998 4181 3.083349 TCCCCCAGGAGTGCATCG 61.083 66.667 0.00 0.00 37.19 3.84
999 4182 2.592308 GTCCCCCAGGAGTGCATC 59.408 66.667 0.00 0.00 45.21 3.91
1000 4183 3.017581 GGTCCCCCAGGAGTGCAT 61.018 66.667 0.00 0.00 45.21 3.96
1042 4225 4.959596 GATGAGGAGGAGCGCCGC 62.960 72.222 2.29 0.00 39.96 6.53
1043 4226 4.637489 CGATGAGGAGGAGCGCCG 62.637 72.222 2.29 0.00 39.96 6.46
1044 4227 4.959596 GCGATGAGGAGGAGCGCC 62.960 72.222 2.29 0.00 41.65 6.53
1045 4228 4.959596 GGCGATGAGGAGGAGCGC 62.960 72.222 0.00 0.00 46.20 5.92
1046 4229 3.531207 TGGCGATGAGGAGGAGCG 61.531 66.667 0.00 0.00 0.00 5.03
1047 4230 2.107953 GTGGCGATGAGGAGGAGC 59.892 66.667 0.00 0.00 0.00 4.70
1048 4231 1.760086 AGGTGGCGATGAGGAGGAG 60.760 63.158 0.00 0.00 0.00 3.69
1049 4232 2.060383 CAGGTGGCGATGAGGAGGA 61.060 63.158 0.00 0.00 0.00 3.71
1050 4233 2.503061 CAGGTGGCGATGAGGAGG 59.497 66.667 0.00 0.00 0.00 4.30
1051 4234 2.202987 GCAGGTGGCGATGAGGAG 60.203 66.667 0.00 0.00 0.00 3.69
1151 4334 3.006247 CAGACTGCTCTAAAGAAAGGCC 58.994 50.000 0.00 0.00 0.00 5.19
1152 4335 2.418280 GCAGACTGCTCTAAAGAAAGGC 59.582 50.000 20.41 0.00 40.96 4.35
1163 4348 1.804372 CGGGATAACTGCAGACTGCTC 60.804 57.143 26.94 15.75 45.31 4.26
1186 4371 3.774702 GTGAACGCTCGCGGTTCC 61.775 66.667 19.47 10.30 40.58 3.62
1232 4417 2.288961 TCGGCGGTACTGAAGAAATC 57.711 50.000 7.21 0.00 0.00 2.17
1235 4420 2.754946 ATTTCGGCGGTACTGAAGAA 57.245 45.000 7.21 7.01 44.47 2.52
1260 4445 4.340950 CCTACCAGGACTCTTCAGAGAATC 59.659 50.000 10.93 0.00 44.79 2.52
1285 4470 2.750637 ACGACGTCGAGCCCTGAT 60.751 61.111 41.52 16.22 43.02 2.90
1347 4546 1.134818 CCGGACAGATCGGTGAATTCA 60.135 52.381 3.38 3.38 42.33 2.57
1500 4702 0.814457 GTGGGCACACAAGACACAAA 59.186 50.000 15.95 0.00 46.90 2.83
1660 4910 8.869109 AGATATGAAACATGGAAAACAAAAGGA 58.131 29.630 0.00 0.00 0.00 3.36
1692 4987 9.985730 ATTATATGTTGTAAAATGATGGCCTTG 57.014 29.630 3.32 0.00 0.00 3.61
1751 5046 1.269051 GGAACTGGTTTTGTTCAGCGG 60.269 52.381 8.54 0.00 43.84 5.52
1866 5164 9.626045 CGATGAATGATAGTAATAGCAACTGTA 57.374 33.333 0.00 0.00 0.00 2.74
1951 5249 7.397892 TGTTTTCAGAAATTTGTCAGTGGTA 57.602 32.000 0.00 0.00 0.00 3.25
2033 5331 2.363306 TCACCTGCTTTGTGTTCCAT 57.637 45.000 0.00 0.00 35.25 3.41
2058 5356 5.059161 GCATTGCACATCCTACTAGAATGA 58.941 41.667 3.15 0.00 0.00 2.57
2064 5362 5.989477 AGTTTAGCATTGCACATCCTACTA 58.011 37.500 11.91 0.00 0.00 1.82
2091 5389 8.932945 TTTAGTGAGCATCTACACATTTAGAG 57.067 34.615 0.00 0.00 39.18 2.43
2095 5393 8.565896 TCAATTTAGTGAGCATCTACACATTT 57.434 30.769 0.00 0.00 39.18 2.32
2138 5541 6.202954 GCACTTGTTATATTATTCGTCAGGCT 59.797 38.462 0.00 0.00 0.00 4.58
2170 5573 7.538575 ACATTGCACTTGACCAATATTACTTC 58.461 34.615 2.94 0.00 30.96 3.01
2182 5585 3.952535 ACTCGAAAACATTGCACTTGAC 58.047 40.909 2.94 0.00 0.00 3.18
2851 6861 1.738350 CGACTAGTCGCTCTTTCTGGA 59.262 52.381 30.44 0.00 46.50 3.86
3049 7068 3.640967 TGCAGTAGAAATTGGCAAACCTT 59.359 39.130 3.01 0.00 36.63 3.50
3144 7163 5.851177 CAGCATTGAACTTAACACCGTAAAG 59.149 40.000 0.00 0.00 0.00 1.85
3222 7241 1.159713 TGACAGCTTTCGGCACAGTG 61.160 55.000 0.00 0.00 44.79 3.66
3228 7247 2.982470 CAAGAAAATGACAGCTTTCGGC 59.018 45.455 0.00 0.00 36.78 5.54
3422 7445 4.214119 GCAAGCAGACATCACTAAGTTTGA 59.786 41.667 0.00 0.00 0.00 2.69
3427 7450 3.593096 TCTGCAAGCAGACATCACTAAG 58.407 45.455 20.00 0.00 46.80 2.18
3524 7547 2.237393 TGTGCTGCCCAAATTGAAAC 57.763 45.000 0.00 0.00 0.00 2.78
3531 7554 1.272369 TGACCATATGTGCTGCCCAAA 60.272 47.619 1.24 0.00 0.00 3.28
3680 7706 9.533253 AATTAAGCATATCAGTAACAAATTGGC 57.467 29.630 0.00 0.00 0.00 4.52
3716 7742 6.767902 TGTCAAGAACATTCTGATAATAGCCC 59.232 38.462 0.00 0.00 37.65 5.19
3726 7752 4.974275 CAGCAGTTTGTCAAGAACATTCTG 59.026 41.667 0.00 0.00 39.65 3.02
3806 7991 9.736023 AACTAACAATGTCAACTGAAAAAGATC 57.264 29.630 0.00 0.00 0.00 2.75
3837 8022 6.834168 ATGTCTTACATTTTGTTACAGGGG 57.166 37.500 0.00 0.00 34.67 4.79
3907 8093 3.073274 AGTGGAGCAAATACAACCTCC 57.927 47.619 0.00 0.00 43.27 4.30
4045 8272 7.792032 TGGTAGTAGAAAAATGTAGATCAGGG 58.208 38.462 0.00 0.00 0.00 4.45
4069 8298 1.173444 CCGGACGGAGGGAGTAGATG 61.173 65.000 4.40 0.00 37.50 2.90
4075 8304 1.218316 CTTTTCCGGACGGAGGGAG 59.782 63.158 13.64 9.15 46.06 4.30
4076 8305 2.951101 GCTTTTCCGGACGGAGGGA 61.951 63.158 13.64 1.83 46.06 4.20
4077 8306 2.436115 GCTTTTCCGGACGGAGGG 60.436 66.667 13.64 8.97 46.06 4.30
4078 8307 1.003718 AAGCTTTTCCGGACGGAGG 60.004 57.895 13.64 9.30 46.06 4.30
4079 8308 0.602905 ACAAGCTTTTCCGGACGGAG 60.603 55.000 13.64 3.27 46.06 4.63
4080 8309 0.601841 GACAAGCTTTTCCGGACGGA 60.602 55.000 1.83 9.76 43.52 4.69
4081 8310 1.574702 GGACAAGCTTTTCCGGACGG 61.575 60.000 15.65 3.96 0.00 4.79
4082 8311 1.574702 GGGACAAGCTTTTCCGGACG 61.575 60.000 22.30 0.00 32.00 4.79
4083 8312 0.250770 AGGGACAAGCTTTTCCGGAC 60.251 55.000 22.30 11.02 32.00 4.79
4084 8313 0.036306 GAGGGACAAGCTTTTCCGGA 59.964 55.000 22.30 0.00 32.00 5.14
4085 8314 0.250727 TGAGGGACAAGCTTTTCCGG 60.251 55.000 22.30 0.00 32.00 5.14
4086 8315 1.604604 TTGAGGGACAAGCTTTTCCG 58.395 50.000 22.30 2.85 34.20 4.30
4087 8316 3.306294 CCATTTGAGGGACAAGCTTTTCC 60.306 47.826 21.34 21.34 39.77 3.13
4088 8317 3.573967 TCCATTTGAGGGACAAGCTTTTC 59.426 43.478 3.91 3.91 39.77 2.29
4089 8318 3.575805 TCCATTTGAGGGACAAGCTTTT 58.424 40.909 0.00 0.00 39.77 2.27
4090 8319 3.243359 TCCATTTGAGGGACAAGCTTT 57.757 42.857 0.00 0.00 39.77 3.51
4091 8320 2.978156 TCCATTTGAGGGACAAGCTT 57.022 45.000 0.00 0.00 39.77 3.74
4092 8321 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
4093 8322 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
4094 8323 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
4095 8324 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
4096 8325 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
4097 8326 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
4098 8327 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
4099 8328 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
4100 8329 4.999950 GGTGCTAGATACATCCATTTGAGG 59.000 45.833 0.00 0.00 0.00 3.86
4101 8330 5.614308 TGGTGCTAGATACATCCATTTGAG 58.386 41.667 0.00 0.00 0.00 3.02
4102 8331 5.628797 TGGTGCTAGATACATCCATTTGA 57.371 39.130 0.00 0.00 0.00 2.69
4103 8332 5.824624 ACTTGGTGCTAGATACATCCATTTG 59.175 40.000 0.00 0.00 0.00 2.32
4104 8333 6.006275 ACTTGGTGCTAGATACATCCATTT 57.994 37.500 0.00 0.00 0.00 2.32
4105 8334 5.636903 ACTTGGTGCTAGATACATCCATT 57.363 39.130 0.00 0.00 0.00 3.16
4106 8335 5.636903 AACTTGGTGCTAGATACATCCAT 57.363 39.130 0.00 0.00 0.00 3.41
4107 8336 5.661312 ACTAACTTGGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
4108 8337 5.986135 CACTAACTTGGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
4120 8349 5.986135 GGATGTATCTAGCACTAACTTGGTG 59.014 44.000 0.97 0.97 37.70 4.17
4121 8350 5.661312 TGGATGTATCTAGCACTAACTTGGT 59.339 40.000 0.00 0.00 0.00 3.67
4122 8351 6.161855 TGGATGTATCTAGCACTAACTTGG 57.838 41.667 0.00 0.00 0.00 3.61
4123 8352 8.554528 CAAATGGATGTATCTAGCACTAACTTG 58.445 37.037 0.00 0.00 0.00 3.16
4124 8353 8.486210 TCAAATGGATGTATCTAGCACTAACTT 58.514 33.333 0.00 0.00 0.00 2.66
4125 8354 8.023021 TCAAATGGATGTATCTAGCACTAACT 57.977 34.615 0.00 0.00 0.00 2.24
4126 8355 7.386299 CCTCAAATGGATGTATCTAGCACTAAC 59.614 40.741 0.00 0.00 0.00 2.34
4127 8356 7.445121 CCTCAAATGGATGTATCTAGCACTAA 58.555 38.462 0.00 0.00 0.00 2.24
4128 8357 6.014242 CCCTCAAATGGATGTATCTAGCACTA 60.014 42.308 0.00 0.00 0.00 2.74
4129 8358 5.221803 CCCTCAAATGGATGTATCTAGCACT 60.222 44.000 0.00 0.00 0.00 4.40
4130 8359 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
4131 8360 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
4132 8361 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
4133 8362 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
4134 8363 6.688922 GCTTGTCCCTCAAATGGATGTATCTA 60.689 42.308 0.00 0.00 35.48 1.98
4135 8364 5.688807 CTTGTCCCTCAAATGGATGTATCT 58.311 41.667 0.00 0.00 35.48 1.98
4136 8365 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
4137 8366 4.210331 GCTTGTCCCTCAAATGGATGTAT 58.790 43.478 0.00 0.00 35.48 2.29
4138 8367 3.620488 GCTTGTCCCTCAAATGGATGTA 58.380 45.455 0.00 0.00 35.48 2.29
4139 8368 2.450476 GCTTGTCCCTCAAATGGATGT 58.550 47.619 0.00 0.00 35.48 3.06
4140 8369 1.753073 GGCTTGTCCCTCAAATGGATG 59.247 52.381 0.00 0.00 35.48 3.51
4141 8370 1.642762 AGGCTTGTCCCTCAAATGGAT 59.357 47.619 0.00 0.00 35.48 3.41
4142 8371 1.075601 AGGCTTGTCCCTCAAATGGA 58.924 50.000 0.00 0.00 35.48 3.41
4143 8372 1.180029 CAGGCTTGTCCCTCAAATGG 58.820 55.000 0.00 0.00 35.48 3.16
4144 8373 1.180029 CCAGGCTTGTCCCTCAAATG 58.820 55.000 0.00 0.00 35.48 2.32
4145 8374 0.040204 CCCAGGCTTGTCCCTCAAAT 59.960 55.000 0.00 0.00 35.48 2.32
4146 8375 1.065410 TCCCAGGCTTGTCCCTCAAA 61.065 55.000 0.00 0.00 35.48 2.69
4147 8376 1.463214 TCCCAGGCTTGTCCCTCAA 60.463 57.895 0.00 0.00 31.24 3.02
4148 8377 2.206900 TCCCAGGCTTGTCCCTCA 59.793 61.111 0.00 0.00 31.24 3.86
4149 8378 1.779061 TTGTCCCAGGCTTGTCCCTC 61.779 60.000 0.00 0.00 31.24 4.30
4150 8379 1.774217 TTGTCCCAGGCTTGTCCCT 60.774 57.895 0.00 0.00 34.93 4.20
4151 8380 1.303643 CTTGTCCCAGGCTTGTCCC 60.304 63.158 0.00 0.00 34.51 4.46
4152 8381 1.973812 GCTTGTCCCAGGCTTGTCC 60.974 63.158 0.00 0.00 33.60 4.02
4153 8382 1.073897 AGCTTGTCCCAGGCTTGTC 59.926 57.895 0.00 0.00 44.21 3.18
4154 8383 3.255032 AGCTTGTCCCAGGCTTGT 58.745 55.556 0.00 0.00 44.21 3.16
4158 8387 0.039165 CGAAAAAGCTTGTCCCAGGC 60.039 55.000 0.00 0.00 36.70 4.85
4159 8388 0.598065 CCGAAAAAGCTTGTCCCAGG 59.402 55.000 0.00 0.00 0.00 4.45
4160 8389 1.266989 GTCCGAAAAAGCTTGTCCCAG 59.733 52.381 0.00 0.00 0.00 4.45
4161 8390 1.314730 GTCCGAAAAAGCTTGTCCCA 58.685 50.000 0.00 0.00 0.00 4.37
4162 8391 0.237498 CGTCCGAAAAAGCTTGTCCC 59.763 55.000 0.00 0.00 0.00 4.46
4163 8392 0.237498 CCGTCCGAAAAAGCTTGTCC 59.763 55.000 0.00 0.00 0.00 4.02
4164 8393 1.194772 CTCCGTCCGAAAAAGCTTGTC 59.805 52.381 0.00 0.00 0.00 3.18
4165 8394 1.226746 CTCCGTCCGAAAAAGCTTGT 58.773 50.000 0.00 0.00 0.00 3.16
4166 8395 0.517316 CCTCCGTCCGAAAAAGCTTG 59.483 55.000 0.00 0.00 0.00 4.01
4167 8396 0.605589 CCCTCCGTCCGAAAAAGCTT 60.606 55.000 0.00 0.00 0.00 3.74
4168 8397 1.003718 CCCTCCGTCCGAAAAAGCT 60.004 57.895 0.00 0.00 0.00 3.74
4169 8398 1.004200 TCCCTCCGTCCGAAAAAGC 60.004 57.895 0.00 0.00 0.00 3.51
4170 8399 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.000 0.00 0.00 0.00 2.27
4171 8400 1.631405 TACTCCCTCCGTCCGAAAAA 58.369 50.000 0.00 0.00 0.00 1.94
4172 8401 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
4173 8402 2.734755 TATACTCCCTCCGTCCGAAA 57.265 50.000 0.00 0.00 0.00 3.46
4174 8403 2.889045 CAATATACTCCCTCCGTCCGAA 59.111 50.000 0.00 0.00 0.00 4.30
4175 8404 2.158564 ACAATATACTCCCTCCGTCCGA 60.159 50.000 0.00 0.00 0.00 4.55
4176 8405 2.228343 GACAATATACTCCCTCCGTCCG 59.772 54.545 0.00 0.00 0.00 4.79
4177 8406 2.561858 GGACAATATACTCCCTCCGTCC 59.438 54.545 0.00 0.00 35.34 4.79
4178 8407 3.498334 AGGACAATATACTCCCTCCGTC 58.502 50.000 0.00 0.00 0.00 4.79
4179 8408 3.614568 AGGACAATATACTCCCTCCGT 57.385 47.619 0.00 0.00 0.00 4.69
4180 8409 4.919793 TCTAGGACAATATACTCCCTCCG 58.080 47.826 0.00 0.00 0.00 4.63
4181 8410 6.075984 TGTTCTAGGACAATATACTCCCTCC 58.924 44.000 0.00 0.00 0.00 4.30
4182 8411 7.005296 TCTGTTCTAGGACAATATACTCCCTC 58.995 42.308 5.12 0.00 0.00 4.30
4183 8412 6.923670 TCTGTTCTAGGACAATATACTCCCT 58.076 40.000 5.12 0.00 0.00 4.20
4184 8413 7.784470 ATCTGTTCTAGGACAATATACTCCC 57.216 40.000 5.12 0.00 0.00 4.30
4237 8466 3.567164 GGTGACAATAGGAATGCTCCATG 59.433 47.826 0.00 0.00 45.24 3.66
4238 8467 3.461085 AGGTGACAATAGGAATGCTCCAT 59.539 43.478 0.00 0.00 45.24 3.41
4241 8471 3.629398 CCAAGGTGACAATAGGAATGCTC 59.371 47.826 0.00 0.00 0.00 4.26
4244 8474 4.202441 CTCCCAAGGTGACAATAGGAATG 58.798 47.826 0.00 0.00 0.00 2.67
4251 8481 4.168101 TCTCTTACTCCCAAGGTGACAAT 58.832 43.478 0.00 0.00 0.00 2.71
4339 8569 3.181497 TGCAGCACTTCTTGACAAAAGAC 60.181 43.478 13.55 7.73 0.00 3.01
4526 8756 0.690762 GTGGAGCCTTACCTGGTCAA 59.309 55.000 0.63 0.00 0.00 3.18
4538 8768 2.206576 AATGGACAAAGAGTGGAGCC 57.793 50.000 0.00 0.00 0.00 4.70
4569 8799 2.295070 TCGTGTCAAAGACGAATCCAGA 59.705 45.455 0.00 0.00 42.63 3.86
4578 8808 3.955887 GAGACGAATCGTGTCAAAGAC 57.044 47.619 24.78 3.57 46.80 3.01
4855 9085 8.237811 ACAACAAATCAGGAATTAACAAGACT 57.762 30.769 0.00 0.00 0.00 3.24
4856 9086 8.871686 AACAACAAATCAGGAATTAACAAGAC 57.128 30.769 0.00 0.00 0.00 3.01
4858 9088 7.647715 ACGAACAACAAATCAGGAATTAACAAG 59.352 33.333 0.00 0.00 0.00 3.16
4909 9144 8.173542 TGCATATTGACTGCTTGATCAATAAT 57.826 30.769 8.96 6.13 45.93 1.28
4926 9161 5.161358 GCATCACCATGATCTTGCATATTG 58.839 41.667 3.07 0.00 34.28 1.90
4927 9162 4.830600 TGCATCACCATGATCTTGCATATT 59.169 37.500 3.07 0.00 35.67 1.28
4928 9163 4.403734 TGCATCACCATGATCTTGCATAT 58.596 39.130 3.07 0.00 35.67 1.78
4929 9164 3.822940 TGCATCACCATGATCTTGCATA 58.177 40.909 3.07 0.00 35.67 3.14
4930 9165 2.661718 TGCATCACCATGATCTTGCAT 58.338 42.857 3.07 0.00 35.67 3.96
4931 9166 2.131776 TGCATCACCATGATCTTGCA 57.868 45.000 3.07 8.61 37.51 4.08
5133 9375 9.745880 GATTCTCTCATAAATTTGTCATGCATT 57.254 29.630 0.00 0.00 0.00 3.56
5136 9378 9.234384 CTTGATTCTCTCATAAATTTGTCATGC 57.766 33.333 0.00 0.00 32.72 4.06
5153 9395 6.644592 GCACAGGTATGACTATCTTGATTCTC 59.355 42.308 0.00 0.00 0.00 2.87
5203 9445 6.106877 ACTTCCGTGATGATAATTTTCGTG 57.893 37.500 0.00 0.00 0.00 4.35
5227 9469 4.991056 CGATTTATCGTCATGGAAGTGGAT 59.009 41.667 4.03 0.00 44.74 3.41
5255 9497 4.806247 CCCTTGACGAAAGCACTTCTATAG 59.194 45.833 0.00 0.00 34.24 1.31
5256 9498 4.222145 ACCCTTGACGAAAGCACTTCTATA 59.778 41.667 0.00 0.00 34.24 1.31
5320 9562 1.222387 CCAAAGCCGGACCCGATAA 59.778 57.895 5.05 0.00 42.83 1.75
5349 9591 0.759959 TTGGTCCAGGCTGTTAACGA 59.240 50.000 14.43 0.62 0.00 3.85
5555 9798 2.579878 CCTGACTCAAGTAGGCCGA 58.420 57.895 0.00 0.00 28.59 5.54
5681 9924 2.670592 GGCCCAAAACCGTAGCGT 60.671 61.111 0.00 0.00 0.00 5.07
5689 9932 1.236616 GCTGCAATTGGGCCCAAAAC 61.237 55.000 40.00 29.63 39.55 2.43
5710 9953 0.108585 AACAGGCCGAAAGAAGCTCA 59.891 50.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.