Multiple sequence alignment - TraesCS3D01G039100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G039100 chr3D 100.000 2453 0 0 1 2453 14555069 14557521 0.000000e+00 4530.0
1 TraesCS3D01G039100 chr3A 88.609 2265 143 44 1 2199 21788193 21785978 0.000000e+00 2647.0
2 TraesCS3D01G039100 chr3B 89.329 2146 150 32 1 2085 21770272 21772399 0.000000e+00 2621.0
3 TraesCS3D01G039100 chr3B 87.798 336 16 8 2086 2416 21778254 21778569 1.070000e-98 370.0
4 TraesCS3D01G039100 chr2D 98.182 55 0 1 1353 1406 6095128 6095182 7.220000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G039100 chr3D 14555069 14557521 2452 False 4530 4530 100.000 1 2453 1 chr3D.!!$F1 2452
1 TraesCS3D01G039100 chr3A 21785978 21788193 2215 True 2647 2647 88.609 1 2199 1 chr3A.!!$R1 2198
2 TraesCS3D01G039100 chr3B 21770272 21772399 2127 False 2621 2621 89.329 1 2085 1 chr3B.!!$F1 2084

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
119 135 0.250727 ACAACATGACGGGAACTGGG 60.251 55.0 0.0 0.0 40.47 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1978 2077 0.105453 ACTGTGAGGTCAGTGGGACT 60.105 55.0 0.0 0.0 45.4 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.147449 TCGATGTCCGGCAGCTGG 62.147 66.667 15.05 15.05 39.14 4.85
103 104 2.137528 TCTCAGCCGTGGTGGACAA 61.138 57.895 3.77 0.00 42.00 3.18
110 126 1.565156 CCGTGGTGGACAACATGACG 61.565 60.000 10.98 1.81 42.00 4.35
119 135 0.250727 ACAACATGACGGGAACTGGG 60.251 55.000 0.00 0.00 40.47 4.45
143 159 3.057547 CTCAGGCGACAGGGACTCG 62.058 68.421 0.00 0.00 34.60 4.18
230 246 1.445582 GGACGACGAAGATGCCGTT 60.446 57.895 0.00 0.00 40.67 4.44
626 648 3.053849 GACAGCCTCCTCGTCGTCC 62.054 68.421 0.00 0.00 0.00 4.79
745 767 4.386413 CTTGGAGAAAGCAGCGGT 57.614 55.556 0.00 0.00 0.00 5.68
749 771 2.032681 GAGAAAGCAGCGGTGGGT 59.967 61.111 17.54 0.00 0.00 4.51
829 851 4.105727 CATCTGGTGCTCGCTCAG 57.894 61.111 6.53 6.53 0.00 3.35
853 885 1.139853 GGCCATGGATCGTCTTCTTCT 59.860 52.381 18.40 0.00 0.00 2.85
856 888 3.462021 CCATGGATCGTCTTCTTCTTCC 58.538 50.000 5.56 0.00 0.00 3.46
943 978 5.532406 TCTCTCTCTTGGGTGTCAAAAATTG 59.468 40.000 0.00 0.00 34.56 2.32
1044 1079 4.096003 CCGAACCCGTCCCTGCAT 62.096 66.667 0.00 0.00 0.00 3.96
1052 1090 1.308069 CCGTCCCTGCATCAACAAGG 61.308 60.000 0.00 0.00 0.00 3.61
1107 1174 1.379642 CCAGATCTGGGCGAAAAGGC 61.380 60.000 31.14 0.00 46.81 4.35
1134 1201 5.088739 CGAAAAAGATGAGAAATTGACGGG 58.911 41.667 0.00 0.00 0.00 5.28
1137 1216 2.196595 AGATGAGAAATTGACGGGGGA 58.803 47.619 0.00 0.00 0.00 4.81
1318 1399 3.069729 GGGGCAAGAAGACATATACGAGT 59.930 47.826 0.00 0.00 0.00 4.18
1579 1672 1.264557 TGTCATTGCGTTTTACCCGTG 59.735 47.619 0.00 0.00 0.00 4.94
1581 1674 1.062873 CATTGCGTTTTACCCGTGCG 61.063 55.000 0.00 0.00 0.00 5.34
1584 1677 3.045492 CGTTTTACCCGTGCGGCT 61.045 61.111 4.91 0.00 33.26 5.52
1585 1678 2.559330 GTTTTACCCGTGCGGCTG 59.441 61.111 4.91 0.00 33.26 4.85
1587 1680 1.227883 TTTTACCCGTGCGGCTGAA 60.228 52.632 4.91 0.00 33.26 3.02
1637 1730 1.265095 GCGCTGTACGTACTAGCCATA 59.735 52.381 28.44 10.60 46.11 2.74
1641 1734 3.363772 GCTGTACGTACTAGCCATAGTCG 60.364 52.174 26.31 0.00 41.46 4.18
1643 1736 0.585357 ACGTACTAGCCATAGTCGCG 59.415 55.000 0.00 0.00 41.46 5.87
1650 1743 0.389426 AGCCATAGTCGCGACGTTTT 60.389 50.000 31.56 18.01 36.20 2.43
1654 1748 1.717113 CATAGTCGCGACGTTTTGACA 59.283 47.619 31.56 11.95 36.20 3.58
1661 1755 1.260561 GCGACGTTTTGACAGACATGT 59.739 47.619 0.00 0.00 44.31 3.21
1672 1766 2.813908 GACATGTGGGACCGACGC 60.814 66.667 1.15 0.00 0.00 5.19
1678 1772 3.307108 TGGGACCGACGCACATCA 61.307 61.111 0.00 0.00 36.54 3.07
1679 1773 2.509336 GGGACCGACGCACATCAG 60.509 66.667 0.00 0.00 0.00 2.90
1682 1776 1.517257 GACCGACGCACATCAGAGG 60.517 63.158 0.00 0.00 0.00 3.69
1735 1829 0.313043 AGGTAACCCATCGTATCGCG 59.687 55.000 0.00 0.00 39.00 5.87
1806 1903 4.047125 CCGGCCCCACCAGTCATT 62.047 66.667 0.00 0.00 39.03 2.57
1811 1908 0.539438 GCCCCACCAGTCATTGACAA 60.539 55.000 18.57 0.00 34.60 3.18
1812 1909 1.993956 CCCCACCAGTCATTGACAAA 58.006 50.000 18.57 0.00 34.60 2.83
1813 1910 2.528564 CCCCACCAGTCATTGACAAAT 58.471 47.619 18.57 0.62 34.60 2.32
1815 1912 3.424703 CCCACCAGTCATTGACAAATCT 58.575 45.455 18.57 0.00 34.60 2.40
1818 1915 5.124457 CCCACCAGTCATTGACAAATCTAAG 59.876 44.000 18.57 1.32 34.60 2.18
1947 2046 3.797353 CGTCCCCATCACCCCCAG 61.797 72.222 0.00 0.00 0.00 4.45
1980 2079 3.322466 CCCTGCGTCCTTCCCAGT 61.322 66.667 0.00 0.00 0.00 4.00
2014 2113 2.226330 CAGTCGCCAGATCTAGCTAGT 58.774 52.381 20.10 8.00 0.00 2.57
2022 2121 4.456566 GCCAGATCTAGCTAGTGGTACTAC 59.543 50.000 23.02 0.19 0.00 2.73
2029 2128 1.709147 CTAGTGGTACTACGCGCGGT 61.709 60.000 35.22 24.76 0.00 5.68
2059 2158 3.499737 GCGTGCGGTTGGGATCTG 61.500 66.667 0.00 0.00 0.00 2.90
2123 2226 9.930693 AACGATAATTAGTTTCTCTCTGACTTT 57.069 29.630 0.00 0.00 0.00 2.66
2134 2237 3.020274 TCTCTGACTTTCCTCCGATCTG 58.980 50.000 0.00 0.00 0.00 2.90
2135 2238 2.100584 CTCTGACTTTCCTCCGATCTGG 59.899 54.545 0.00 0.00 40.09 3.86
2150 2253 1.953559 TCTGGCATATCTGAAACGGC 58.046 50.000 0.00 0.00 0.00 5.68
2169 2272 2.167487 GGCCCTGGAAAATAATTTCGCA 59.833 45.455 0.00 0.00 44.83 5.10
2171 2274 3.130340 GCCCTGGAAAATAATTTCGCAGA 59.870 43.478 16.84 0.00 44.83 4.26
2192 2295 9.449550 CGCAGAAATAATAACAATAAATGAGCA 57.550 29.630 0.00 0.00 0.00 4.26
2203 2306 7.816945 ACAATAAATGAGCAAGTAAATGTGC 57.183 32.000 0.00 0.00 41.22 4.57
2209 2312 1.343506 GCAAGTAAATGTGCTGCTGC 58.656 50.000 8.89 8.89 37.78 5.25
2210 2313 1.068055 GCAAGTAAATGTGCTGCTGCT 60.068 47.619 17.00 0.00 40.48 4.24
2211 2314 2.592194 CAAGTAAATGTGCTGCTGCTG 58.408 47.619 17.00 0.77 40.48 4.41
2212 2315 1.171308 AGTAAATGTGCTGCTGCTGG 58.829 50.000 17.00 0.00 40.48 4.85
2213 2316 1.167851 GTAAATGTGCTGCTGCTGGA 58.832 50.000 17.00 2.36 40.48 3.86
2214 2317 1.541147 GTAAATGTGCTGCTGCTGGAA 59.459 47.619 17.00 0.23 40.48 3.53
2215 2318 0.601558 AAATGTGCTGCTGCTGGAAG 59.398 50.000 17.00 0.00 40.48 3.46
2216 2319 1.248785 AATGTGCTGCTGCTGGAAGG 61.249 55.000 17.00 0.00 40.48 3.46
2217 2320 2.033141 GTGCTGCTGCTGGAAGGA 59.967 61.111 17.00 0.00 40.48 3.36
2218 2321 1.601759 GTGCTGCTGCTGGAAGGAA 60.602 57.895 17.00 0.00 40.48 3.36
2219 2322 1.151221 TGCTGCTGCTGGAAGGAAA 59.849 52.632 17.00 0.00 40.48 3.13
2220 2323 0.251474 TGCTGCTGCTGGAAGGAAAT 60.251 50.000 17.00 0.00 40.48 2.17
2221 2324 0.172803 GCTGCTGCTGGAAGGAAATG 59.827 55.000 8.53 0.00 29.53 2.32
2222 2325 0.815734 CTGCTGCTGGAAGGAAATGG 59.184 55.000 0.00 0.00 29.53 3.16
2223 2326 0.112995 TGCTGCTGGAAGGAAATGGT 59.887 50.000 0.00 0.00 29.53 3.55
2224 2327 1.354031 TGCTGCTGGAAGGAAATGGTA 59.646 47.619 0.00 0.00 29.53 3.25
2225 2328 2.224992 TGCTGCTGGAAGGAAATGGTAA 60.225 45.455 0.00 0.00 29.53 2.85
2226 2329 2.164422 GCTGCTGGAAGGAAATGGTAAC 59.836 50.000 0.00 0.00 29.53 2.50
2227 2330 3.690460 CTGCTGGAAGGAAATGGTAACT 58.310 45.455 0.00 0.00 29.53 2.24
2228 2331 3.420893 TGCTGGAAGGAAATGGTAACTG 58.579 45.455 0.00 0.00 37.61 3.16
2229 2332 3.073798 TGCTGGAAGGAAATGGTAACTGA 59.926 43.478 0.00 0.00 37.61 3.41
2230 2333 4.263905 TGCTGGAAGGAAATGGTAACTGAT 60.264 41.667 0.00 0.00 37.61 2.90
2231 2334 4.096984 GCTGGAAGGAAATGGTAACTGATG 59.903 45.833 0.00 0.00 37.61 3.07
2232 2335 4.016444 TGGAAGGAAATGGTAACTGATGC 58.984 43.478 0.00 0.00 37.61 3.91
2233 2336 3.381590 GGAAGGAAATGGTAACTGATGCC 59.618 47.826 0.00 0.00 37.61 4.40
2234 2337 2.643551 AGGAAATGGTAACTGATGCCG 58.356 47.619 0.00 0.00 36.40 5.69
2235 2338 1.065551 GGAAATGGTAACTGATGCCGC 59.934 52.381 0.00 0.00 36.40 6.53
2236 2339 0.732571 AAATGGTAACTGATGCCGCG 59.267 50.000 0.00 0.00 36.40 6.46
2237 2340 1.095228 AATGGTAACTGATGCCGCGG 61.095 55.000 24.05 24.05 36.40 6.46
2238 2341 2.895372 GGTAACTGATGCCGCGGG 60.895 66.667 29.38 12.50 0.00 6.13
2239 2342 2.895372 GTAACTGATGCCGCGGGG 60.895 66.667 29.38 15.40 0.00 5.73
2262 2365 4.598894 CCATCAGCCTCGGAGCGG 62.599 72.222 0.00 0.00 38.01 5.52
2263 2366 3.842923 CATCAGCCTCGGAGCGGT 61.843 66.667 0.00 0.00 33.07 5.68
2264 2367 3.842923 ATCAGCCTCGGAGCGGTG 61.843 66.667 15.21 15.21 33.07 4.94
2266 2369 4.504916 CAGCCTCGGAGCGGTGAG 62.505 72.222 15.92 0.00 33.07 3.51
2296 2399 3.047877 AAAAAGGCGGTCGCGGAG 61.048 61.111 6.13 0.00 43.06 4.63
2307 2410 2.267642 CGCGGAGGGAAATGGTCA 59.732 61.111 0.00 0.00 46.37 4.02
2308 2411 1.815421 CGCGGAGGGAAATGGTCAG 60.815 63.158 0.00 0.00 46.37 3.51
2309 2412 2.115291 GCGGAGGGAAATGGTCAGC 61.115 63.158 0.00 0.00 0.00 4.26
2310 2413 1.604378 CGGAGGGAAATGGTCAGCT 59.396 57.895 0.00 0.00 0.00 4.24
2311 2414 0.745845 CGGAGGGAAATGGTCAGCTG 60.746 60.000 7.63 7.63 0.00 4.24
2312 2415 0.394899 GGAGGGAAATGGTCAGCTGG 60.395 60.000 15.13 0.00 0.00 4.85
2313 2416 1.000396 AGGGAAATGGTCAGCTGGC 60.000 57.895 15.13 13.00 0.00 4.85
2314 2417 1.000396 GGGAAATGGTCAGCTGGCT 60.000 57.895 19.48 0.00 0.00 4.75
2315 2418 0.613012 GGGAAATGGTCAGCTGGCTT 60.613 55.000 19.48 4.38 0.00 4.35
2316 2419 0.529378 GGAAATGGTCAGCTGGCTTG 59.471 55.000 19.48 0.00 0.00 4.01
2317 2420 0.529378 GAAATGGTCAGCTGGCTTGG 59.471 55.000 19.48 0.00 0.00 3.61
2318 2421 1.538687 AAATGGTCAGCTGGCTTGGC 61.539 55.000 19.48 1.29 0.00 4.52
2349 2452 4.735132 CCCAGAGCGCGACGGAAA 62.735 66.667 12.10 0.00 0.00 3.13
2350 2453 3.181967 CCAGAGCGCGACGGAAAG 61.182 66.667 12.10 0.00 0.00 2.62
2351 2454 3.181967 CAGAGCGCGACGGAAAGG 61.182 66.667 12.10 0.00 0.00 3.11
2352 2455 3.371063 AGAGCGCGACGGAAAGGA 61.371 61.111 12.10 0.00 0.00 3.36
2353 2456 2.881352 GAGCGCGACGGAAAGGAG 60.881 66.667 12.10 0.00 0.00 3.69
2356 2459 4.771356 CGCGACGGAAAGGAGCGA 62.771 66.667 0.00 0.00 46.98 4.93
2357 2460 2.202756 GCGACGGAAAGGAGCGAT 60.203 61.111 0.00 0.00 0.00 4.58
2358 2461 1.810030 GCGACGGAAAGGAGCGATT 60.810 57.895 0.00 0.00 0.00 3.34
2359 2462 1.359459 GCGACGGAAAGGAGCGATTT 61.359 55.000 0.00 0.00 0.00 2.17
2360 2463 1.076332 CGACGGAAAGGAGCGATTTT 58.924 50.000 0.00 0.00 0.00 1.82
2361 2464 1.463444 CGACGGAAAGGAGCGATTTTT 59.537 47.619 0.00 0.00 0.00 1.94
2362 2465 2.474032 CGACGGAAAGGAGCGATTTTTC 60.474 50.000 3.79 3.79 0.00 2.29
2363 2466 2.742589 GACGGAAAGGAGCGATTTTTCT 59.257 45.455 10.18 0.00 32.74 2.52
2364 2467 2.484264 ACGGAAAGGAGCGATTTTTCTG 59.516 45.455 14.87 14.87 41.01 3.02
2365 2468 2.159517 CGGAAAGGAGCGATTTTTCTGG 60.160 50.000 10.73 2.58 34.88 3.86
2366 2469 2.164422 GGAAAGGAGCGATTTTTCTGGG 59.836 50.000 10.18 0.00 32.74 4.45
2367 2470 2.586648 AAGGAGCGATTTTTCTGGGT 57.413 45.000 0.00 0.00 0.00 4.51
2368 2471 1.826385 AGGAGCGATTTTTCTGGGTG 58.174 50.000 0.00 0.00 0.00 4.61
2369 2472 0.171231 GGAGCGATTTTTCTGGGTGC 59.829 55.000 0.00 0.00 0.00 5.01
2370 2473 0.881118 GAGCGATTTTTCTGGGTGCA 59.119 50.000 0.00 0.00 0.00 4.57
2371 2474 1.269448 GAGCGATTTTTCTGGGTGCAA 59.731 47.619 0.00 0.00 0.00 4.08
2372 2475 1.686052 AGCGATTTTTCTGGGTGCAAA 59.314 42.857 0.00 0.00 0.00 3.68
2373 2476 2.299867 AGCGATTTTTCTGGGTGCAAAT 59.700 40.909 0.00 0.00 0.00 2.32
2374 2477 2.667969 GCGATTTTTCTGGGTGCAAATC 59.332 45.455 0.00 0.00 33.88 2.17
2375 2478 3.614870 GCGATTTTTCTGGGTGCAAATCT 60.615 43.478 0.00 0.00 34.69 2.40
2376 2479 4.559153 CGATTTTTCTGGGTGCAAATCTT 58.441 39.130 0.00 0.00 34.69 2.40
2377 2480 4.990426 CGATTTTTCTGGGTGCAAATCTTT 59.010 37.500 0.00 0.00 34.69 2.52
2378 2481 5.466393 CGATTTTTCTGGGTGCAAATCTTTT 59.534 36.000 0.00 0.00 34.69 2.27
2379 2482 6.346838 CGATTTTTCTGGGTGCAAATCTTTTC 60.347 38.462 0.00 0.00 34.69 2.29
2380 2483 4.335400 TTTCTGGGTGCAAATCTTTTCC 57.665 40.909 0.00 0.00 0.00 3.13
2381 2484 3.243359 TCTGGGTGCAAATCTTTTCCT 57.757 42.857 0.00 0.00 0.00 3.36
2382 2485 3.575805 TCTGGGTGCAAATCTTTTCCTT 58.424 40.909 0.00 0.00 0.00 3.36
2383 2486 3.573967 TCTGGGTGCAAATCTTTTCCTTC 59.426 43.478 0.00 0.00 0.00 3.46
2384 2487 3.575687 CTGGGTGCAAATCTTTTCCTTCT 59.424 43.478 0.00 0.00 0.00 2.85
2385 2488 3.321682 TGGGTGCAAATCTTTTCCTTCTG 59.678 43.478 0.00 0.00 0.00 3.02
2386 2489 3.321968 GGGTGCAAATCTTTTCCTTCTGT 59.678 43.478 0.00 0.00 0.00 3.41
2387 2490 4.202253 GGGTGCAAATCTTTTCCTTCTGTT 60.202 41.667 0.00 0.00 0.00 3.16
2388 2491 5.359756 GGTGCAAATCTTTTCCTTCTGTTT 58.640 37.500 0.00 0.00 0.00 2.83
2389 2492 5.817296 GGTGCAAATCTTTTCCTTCTGTTTT 59.183 36.000 0.00 0.00 0.00 2.43
2390 2493 6.316140 GGTGCAAATCTTTTCCTTCTGTTTTT 59.684 34.615 0.00 0.00 0.00 1.94
2415 2518 8.813643 TTTTGGTAAAAAGTGAAACGAAAAGA 57.186 26.923 0.00 0.00 45.86 2.52
2416 2519 8.989653 TTTGGTAAAAAGTGAAACGAAAAGAT 57.010 26.923 0.00 0.00 45.86 2.40
2417 2520 8.989653 TTGGTAAAAAGTGAAACGAAAAGATT 57.010 26.923 0.00 0.00 45.86 2.40
2418 2521 8.989653 TGGTAAAAAGTGAAACGAAAAGATTT 57.010 26.923 0.00 0.00 45.86 2.17
2419 2522 9.425577 TGGTAAAAAGTGAAACGAAAAGATTTT 57.574 25.926 0.00 0.00 45.86 1.82
2420 2523 9.683651 GGTAAAAAGTGAAACGAAAAGATTTTG 57.316 29.630 0.00 0.00 45.86 2.44
2423 2526 9.592720 AAAAAGTGAAACGAAAAGATTTTGTTG 57.407 25.926 8.74 0.00 45.86 3.33
2424 2527 6.331170 AGTGAAACGAAAAGATTTTGTTGC 57.669 33.333 8.74 7.79 45.86 4.17
2425 2528 5.290885 AGTGAAACGAAAAGATTTTGTTGCC 59.709 36.000 8.74 5.78 45.86 4.52
2426 2529 4.568760 TGAAACGAAAAGATTTTGTTGCCC 59.431 37.500 8.74 3.92 0.00 5.36
2427 2530 4.400529 AACGAAAAGATTTTGTTGCCCT 57.599 36.364 7.48 0.00 0.00 5.19
2428 2531 3.977427 ACGAAAAGATTTTGTTGCCCTC 58.023 40.909 0.00 0.00 0.00 4.30
2429 2532 3.636764 ACGAAAAGATTTTGTTGCCCTCT 59.363 39.130 0.00 0.00 0.00 3.69
2430 2533 4.099419 ACGAAAAGATTTTGTTGCCCTCTT 59.901 37.500 0.00 0.00 0.00 2.85
2431 2534 5.049828 CGAAAAGATTTTGTTGCCCTCTTT 58.950 37.500 0.00 0.00 37.67 2.52
2432 2535 5.523552 CGAAAAGATTTTGTTGCCCTCTTTT 59.476 36.000 7.97 7.97 44.51 2.27
2433 2536 6.925610 AAAAGATTTTGTTGCCCTCTTTTC 57.074 33.333 0.00 0.00 40.35 2.29
2434 2537 4.243007 AGATTTTGTTGCCCTCTTTTCG 57.757 40.909 0.00 0.00 0.00 3.46
2435 2538 2.880963 TTTTGTTGCCCTCTTTTCGG 57.119 45.000 0.00 0.00 0.00 4.30
2436 2539 1.036707 TTTGTTGCCCTCTTTTCGGG 58.963 50.000 0.00 0.00 44.89 5.14
2437 2540 0.183971 TTGTTGCCCTCTTTTCGGGA 59.816 50.000 0.00 0.00 44.90 5.14
2438 2541 0.404040 TGTTGCCCTCTTTTCGGGAT 59.596 50.000 0.00 0.00 44.90 3.85
2439 2542 0.811281 GTTGCCCTCTTTTCGGGATG 59.189 55.000 0.00 0.00 44.90 3.51
2440 2543 0.965363 TTGCCCTCTTTTCGGGATGC 60.965 55.000 0.00 0.00 44.90 3.91
2441 2544 2.472909 GCCCTCTTTTCGGGATGCG 61.473 63.158 0.00 0.00 44.90 4.73
2442 2545 2.472909 CCCTCTTTTCGGGATGCGC 61.473 63.158 0.00 0.00 44.90 6.09
2443 2546 2.703409 CTCTTTTCGGGATGCGCG 59.297 61.111 0.00 0.00 41.10 6.86
2444 2547 2.813179 CTCTTTTCGGGATGCGCGG 61.813 63.158 8.83 0.00 40.17 6.46
2445 2548 2.817834 CTTTTCGGGATGCGCGGA 60.818 61.111 8.83 5.00 40.17 5.54
2446 2549 2.124901 TTTTCGGGATGCGCGGAT 60.125 55.556 14.75 14.75 40.17 4.18
2447 2550 2.378945 CTTTTCGGGATGCGCGGATG 62.379 60.000 20.78 3.54 40.17 3.51
2448 2551 3.673956 TTTCGGGATGCGCGGATGT 62.674 57.895 20.78 0.00 40.17 3.06
2449 2552 4.889856 TCGGGATGCGCGGATGTG 62.890 66.667 20.78 7.45 40.17 3.21
2451 2554 4.856801 GGGATGCGCGGATGTGGT 62.857 66.667 20.78 0.00 0.00 4.16
2452 2555 2.108157 GGATGCGCGGATGTGGTA 59.892 61.111 20.78 0.00 0.00 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.574399 GACCTCCTGCGTGGTCTC 59.426 66.667 5.05 0.00 45.40 3.36
103 104 1.838073 GACCCCAGTTCCCGTCATGT 61.838 60.000 0.00 0.00 0.00 3.21
110 126 4.097361 GAGCCGACCCCAGTTCCC 62.097 72.222 0.00 0.00 0.00 3.97
119 135 4.803426 CTGTCGCCTGAGCCGACC 62.803 72.222 13.56 0.00 39.91 4.79
161 177 2.716017 GCCGTCCTCTGTCCTGGAG 61.716 68.421 0.00 0.00 32.36 3.86
188 204 4.081185 TCGGCTGCTCCATTCGCA 62.081 61.111 0.00 0.00 35.80 5.10
230 246 2.738846 GACGTCGTCTTCTACTACACCA 59.261 50.000 18.09 0.00 0.00 4.17
367 383 2.432628 CCTTCGACACTGCCGACC 60.433 66.667 0.00 0.00 35.61 4.79
745 767 2.592287 GGTTCGGCGTCAAACCCA 60.592 61.111 15.81 0.00 39.23 4.51
766 788 0.322816 GCCCAAGACCAAGATGCTCA 60.323 55.000 0.00 0.00 0.00 4.26
804 826 3.503363 GCACCAGATGCGCCTCAC 61.503 66.667 15.26 0.00 46.55 3.51
833 855 1.139853 AGAAGAAGACGATCCATGGCC 59.860 52.381 6.96 0.00 0.00 5.36
844 866 4.509600 CAGTCAGTGTTGGAAGAAGAAGAC 59.490 45.833 0.00 0.00 0.00 3.01
853 885 2.698274 TGCTAGTCAGTCAGTGTTGGAA 59.302 45.455 0.00 0.00 0.00 3.53
856 888 4.572389 AGTTTTGCTAGTCAGTCAGTGTTG 59.428 41.667 0.00 0.00 0.00 3.33
1044 1079 2.555227 GGATTCTTGCTCCCCTTGTTGA 60.555 50.000 0.00 0.00 0.00 3.18
1052 1090 3.118992 GGTTTTGATGGATTCTTGCTCCC 60.119 47.826 0.00 0.00 31.32 4.30
1107 1174 3.764885 ATTTCTCATCTTTTTCGCCGG 57.235 42.857 0.00 0.00 0.00 6.13
1146 1225 2.680352 ATGCTCAGGTCCGTCCGT 60.680 61.111 0.00 0.00 41.99 4.69
1147 1226 2.105128 GATGCTCAGGTCCGTCCG 59.895 66.667 0.00 0.00 41.99 4.79
1318 1399 1.415672 AAGAAGAAGACGCCCCACCA 61.416 55.000 0.00 0.00 0.00 4.17
1470 1563 0.451783 GATTTAGGTGGGCAAGTGCG 59.548 55.000 0.00 0.00 43.26 5.34
1473 1566 0.679960 GGCGATTTAGGTGGGCAAGT 60.680 55.000 0.00 0.00 0.00 3.16
1475 1568 1.747367 CGGCGATTTAGGTGGGCAA 60.747 57.895 0.00 0.00 0.00 4.52
1502 1595 2.123640 CGGGTGGTTGGGTGGTTT 60.124 61.111 0.00 0.00 0.00 3.27
1503 1596 4.906537 GCGGGTGGTTGGGTGGTT 62.907 66.667 0.00 0.00 0.00 3.67
1575 1668 1.444212 CCATTTTTCAGCCGCACGG 60.444 57.895 4.30 4.30 38.57 4.94
1579 1672 2.061028 CACTTTCCATTTTTCAGCCGC 58.939 47.619 0.00 0.00 0.00 6.53
1581 1674 4.051237 GTGTCACTTTCCATTTTTCAGCC 58.949 43.478 0.00 0.00 0.00 4.85
1584 1677 3.697045 ACCGTGTCACTTTCCATTTTTCA 59.303 39.130 0.65 0.00 0.00 2.69
1585 1678 4.301637 ACCGTGTCACTTTCCATTTTTC 57.698 40.909 0.65 0.00 0.00 2.29
1587 1680 3.697045 TCAACCGTGTCACTTTCCATTTT 59.303 39.130 0.65 0.00 0.00 1.82
1637 1730 0.248743 TCTGTCAAAACGTCGCGACT 60.249 50.000 33.94 19.70 0.00 4.18
1641 1734 1.260561 ACATGTCTGTCAAAACGTCGC 59.739 47.619 0.00 0.00 0.00 5.19
1643 1736 2.032030 CCCACATGTCTGTCAAAACGTC 60.032 50.000 0.00 0.00 31.62 4.34
1650 1743 0.830023 TCGGTCCCACATGTCTGTCA 60.830 55.000 0.00 0.00 31.62 3.58
1654 1748 2.970639 CGTCGGTCCCACATGTCT 59.029 61.111 0.00 0.00 0.00 3.41
1661 1755 3.295304 CTGATGTGCGTCGGTCCCA 62.295 63.158 0.00 0.00 0.00 4.37
1672 1766 2.124983 CGGTGGGCCTCTGATGTG 60.125 66.667 8.79 0.00 0.00 3.21
1735 1829 1.749258 GCGGTTCCAGACCCATTCC 60.749 63.158 0.00 0.00 46.35 3.01
1752 1846 4.404654 CGGACAAAAGGCCAGCGC 62.405 66.667 5.01 0.00 0.00 5.92
1811 1908 7.092716 TCGCGTTTCTTACCTAAACTTAGATT 58.907 34.615 5.77 0.00 35.20 2.40
1812 1909 6.624423 TCGCGTTTCTTACCTAAACTTAGAT 58.376 36.000 5.77 0.00 35.20 1.98
1813 1910 6.012658 TCGCGTTTCTTACCTAAACTTAGA 57.987 37.500 5.77 0.00 35.20 2.10
1815 1912 4.622740 GCTCGCGTTTCTTACCTAAACTTA 59.377 41.667 5.77 0.00 35.20 2.24
1818 1915 2.222442 CGCTCGCGTTTCTTACCTAAAC 60.222 50.000 5.77 0.00 34.25 2.01
1947 2046 3.799755 GGCCCGCGTGTCATTGAC 61.800 66.667 9.93 9.93 0.00 3.18
1966 2065 3.319198 GGGACTGGGAAGGACGCA 61.319 66.667 0.00 0.00 39.53 5.24
1967 2066 3.319198 TGGGACTGGGAAGGACGC 61.319 66.667 0.00 0.00 0.00 5.19
1971 2070 1.679898 GTCAGTGGGACTGGGAAGG 59.320 63.158 3.96 0.00 45.94 3.46
1973 2072 0.836400 GAGGTCAGTGGGACTGGGAA 60.836 60.000 3.96 0.00 45.94 3.97
1978 2077 0.105453 ACTGTGAGGTCAGTGGGACT 60.105 55.000 0.00 0.00 45.40 3.85
1980 2079 1.179174 CGACTGTGAGGTCAGTGGGA 61.179 60.000 4.06 0.00 46.81 4.37
1991 2090 0.741326 GCTAGATCTGGCGACTGTGA 59.259 55.000 15.83 0.00 0.00 3.58
2014 2113 2.126385 CAACCGCGCGTAGTACCA 60.126 61.111 29.95 0.00 0.00 3.25
2029 2128 4.738998 CACGCTGCCCATCCCCAA 62.739 66.667 0.00 0.00 0.00 4.12
2040 2139 3.499737 GATCCCAACCGCACGCTG 61.500 66.667 0.00 0.00 0.00 5.18
2041 2140 3.706373 AGATCCCAACCGCACGCT 61.706 61.111 0.00 0.00 0.00 5.07
2096 2199 8.918961 AGTCAGAGAGAAACTAATTATCGTTG 57.081 34.615 0.00 0.00 34.40 4.10
2102 2205 8.532819 GGAGGAAAGTCAGAGAGAAACTAATTA 58.467 37.037 0.00 0.00 0.00 1.40
2123 2226 2.174360 CAGATATGCCAGATCGGAGGA 58.826 52.381 7.64 0.00 36.56 3.71
2134 2237 0.179018 AGGGCCGTTTCAGATATGCC 60.179 55.000 0.00 0.00 38.16 4.40
2135 2238 0.947244 CAGGGCCGTTTCAGATATGC 59.053 55.000 0.00 0.00 0.00 3.14
2150 2253 4.981806 TCTGCGAAATTATTTTCCAGGG 57.018 40.909 18.30 4.66 38.86 4.45
2180 2283 7.463648 GCAGCACATTTACTTGCTCATTTATTG 60.464 37.037 0.00 0.00 46.31 1.90
2192 2295 1.542915 CCAGCAGCAGCACATTTACTT 59.457 47.619 3.17 0.00 45.49 2.24
2199 2302 2.281970 CCTTCCAGCAGCAGCACA 60.282 61.111 3.17 0.00 45.49 4.57
2200 2303 1.174712 TTTCCTTCCAGCAGCAGCAC 61.175 55.000 3.17 0.00 45.49 4.40
2201 2304 0.251474 ATTTCCTTCCAGCAGCAGCA 60.251 50.000 3.17 0.00 45.49 4.41
2202 2305 0.172803 CATTTCCTTCCAGCAGCAGC 59.827 55.000 0.00 0.00 42.56 5.25
2203 2306 0.815734 CCATTTCCTTCCAGCAGCAG 59.184 55.000 0.00 0.00 0.00 4.24
2204 2307 0.112995 ACCATTTCCTTCCAGCAGCA 59.887 50.000 0.00 0.00 0.00 4.41
2205 2308 2.128771 TACCATTTCCTTCCAGCAGC 57.871 50.000 0.00 0.00 0.00 5.25
2206 2309 3.441572 CAGTTACCATTTCCTTCCAGCAG 59.558 47.826 0.00 0.00 0.00 4.24
2207 2310 3.073798 TCAGTTACCATTTCCTTCCAGCA 59.926 43.478 0.00 0.00 0.00 4.41
2208 2311 3.686016 TCAGTTACCATTTCCTTCCAGC 58.314 45.455 0.00 0.00 0.00 4.85
2209 2312 4.096984 GCATCAGTTACCATTTCCTTCCAG 59.903 45.833 0.00 0.00 0.00 3.86
2210 2313 4.016444 GCATCAGTTACCATTTCCTTCCA 58.984 43.478 0.00 0.00 0.00 3.53
2211 2314 3.381590 GGCATCAGTTACCATTTCCTTCC 59.618 47.826 0.00 0.00 0.00 3.46
2212 2315 3.065371 CGGCATCAGTTACCATTTCCTTC 59.935 47.826 0.00 0.00 0.00 3.46
2213 2316 3.016736 CGGCATCAGTTACCATTTCCTT 58.983 45.455 0.00 0.00 0.00 3.36
2214 2317 2.643551 CGGCATCAGTTACCATTTCCT 58.356 47.619 0.00 0.00 0.00 3.36
2215 2318 1.065551 GCGGCATCAGTTACCATTTCC 59.934 52.381 0.00 0.00 0.00 3.13
2216 2319 1.268032 CGCGGCATCAGTTACCATTTC 60.268 52.381 0.00 0.00 0.00 2.17
2217 2320 0.732571 CGCGGCATCAGTTACCATTT 59.267 50.000 0.00 0.00 0.00 2.32
2218 2321 1.095228 CCGCGGCATCAGTTACCATT 61.095 55.000 14.67 0.00 0.00 3.16
2219 2322 1.523711 CCGCGGCATCAGTTACCAT 60.524 57.895 14.67 0.00 0.00 3.55
2220 2323 2.125310 CCGCGGCATCAGTTACCA 60.125 61.111 14.67 0.00 0.00 3.25
2221 2324 2.895372 CCCGCGGCATCAGTTACC 60.895 66.667 22.85 0.00 0.00 2.85
2222 2325 2.895372 CCCCGCGGCATCAGTTAC 60.895 66.667 22.85 0.00 0.00 2.50
2245 2348 4.598894 CCGCTCCGAGGCTGATGG 62.599 72.222 0.00 0.00 0.00 3.51
2246 2349 3.842923 ACCGCTCCGAGGCTGATG 61.843 66.667 0.00 0.00 0.00 3.07
2247 2350 3.842923 CACCGCTCCGAGGCTGAT 61.843 66.667 0.00 0.00 0.00 2.90
2249 2352 4.504916 CTCACCGCTCCGAGGCTG 62.505 72.222 0.00 0.00 0.00 4.85
2279 2382 3.047877 CTCCGCGACCGCCTTTTT 61.048 61.111 8.23 0.00 37.98 1.94
2285 2388 4.832608 ATTTCCCTCCGCGACCGC 62.833 66.667 8.23 4.06 37.85 5.68
2286 2389 2.890474 CATTTCCCTCCGCGACCG 60.890 66.667 8.23 0.00 0.00 4.79
2287 2390 2.513897 CCATTTCCCTCCGCGACC 60.514 66.667 8.23 0.00 0.00 4.79
2288 2391 1.814169 GACCATTTCCCTCCGCGAC 60.814 63.158 8.23 0.00 0.00 5.19
2289 2392 2.238847 CTGACCATTTCCCTCCGCGA 62.239 60.000 8.23 0.00 0.00 5.87
2290 2393 1.815421 CTGACCATTTCCCTCCGCG 60.815 63.158 0.00 0.00 0.00 6.46
2291 2394 2.115291 GCTGACCATTTCCCTCCGC 61.115 63.158 0.00 0.00 0.00 5.54
2292 2395 0.745845 CAGCTGACCATTTCCCTCCG 60.746 60.000 8.42 0.00 0.00 4.63
2293 2396 0.394899 CCAGCTGACCATTTCCCTCC 60.395 60.000 17.39 0.00 0.00 4.30
2294 2397 1.034292 GCCAGCTGACCATTTCCCTC 61.034 60.000 17.39 0.00 0.00 4.30
2295 2398 1.000396 GCCAGCTGACCATTTCCCT 60.000 57.895 17.39 0.00 0.00 4.20
2296 2399 0.613012 AAGCCAGCTGACCATTTCCC 60.613 55.000 17.39 0.00 0.00 3.97
2297 2400 0.529378 CAAGCCAGCTGACCATTTCC 59.471 55.000 17.39 0.00 0.00 3.13
2298 2401 0.529378 CCAAGCCAGCTGACCATTTC 59.471 55.000 17.39 0.00 0.00 2.17
2299 2402 1.538687 GCCAAGCCAGCTGACCATTT 61.539 55.000 17.39 0.00 0.00 2.32
2300 2403 1.980772 GCCAAGCCAGCTGACCATT 60.981 57.895 17.39 0.82 0.00 3.16
2301 2404 2.362120 GCCAAGCCAGCTGACCAT 60.362 61.111 17.39 0.00 0.00 3.55
2332 2435 4.735132 TTTCCGTCGCGCTCTGGG 62.735 66.667 5.56 1.07 0.00 4.45
2333 2436 3.181967 CTTTCCGTCGCGCTCTGG 61.182 66.667 5.56 3.80 0.00 3.86
2334 2437 3.181967 CCTTTCCGTCGCGCTCTG 61.182 66.667 5.56 0.00 0.00 3.35
2335 2438 3.343788 CTCCTTTCCGTCGCGCTCT 62.344 63.158 5.56 0.00 0.00 4.09
2336 2439 2.881352 CTCCTTTCCGTCGCGCTC 60.881 66.667 5.56 0.00 0.00 5.03
2339 2442 4.771356 TCGCTCCTTTCCGTCGCG 62.771 66.667 0.00 0.00 44.63 5.87
2340 2443 1.359459 AAATCGCTCCTTTCCGTCGC 61.359 55.000 0.00 0.00 0.00 5.19
2341 2444 1.076332 AAAATCGCTCCTTTCCGTCG 58.924 50.000 0.00 0.00 0.00 5.12
2342 2445 2.742589 AGAAAAATCGCTCCTTTCCGTC 59.257 45.455 0.00 0.00 30.83 4.79
2343 2446 2.484264 CAGAAAAATCGCTCCTTTCCGT 59.516 45.455 0.00 0.00 30.83 4.69
2344 2447 2.159517 CCAGAAAAATCGCTCCTTTCCG 60.160 50.000 0.00 0.00 30.83 4.30
2345 2448 2.164422 CCCAGAAAAATCGCTCCTTTCC 59.836 50.000 0.00 0.00 30.83 3.13
2346 2449 2.820197 ACCCAGAAAAATCGCTCCTTTC 59.180 45.455 0.00 0.00 0.00 2.62
2347 2450 2.558359 CACCCAGAAAAATCGCTCCTTT 59.442 45.455 0.00 0.00 0.00 3.11
2348 2451 2.162681 CACCCAGAAAAATCGCTCCTT 58.837 47.619 0.00 0.00 0.00 3.36
2349 2452 1.826385 CACCCAGAAAAATCGCTCCT 58.174 50.000 0.00 0.00 0.00 3.69
2350 2453 0.171231 GCACCCAGAAAAATCGCTCC 59.829 55.000 0.00 0.00 0.00 4.70
2351 2454 0.881118 TGCACCCAGAAAAATCGCTC 59.119 50.000 0.00 0.00 0.00 5.03
2352 2455 1.327303 TTGCACCCAGAAAAATCGCT 58.673 45.000 0.00 0.00 0.00 4.93
2353 2456 2.147436 TTTGCACCCAGAAAAATCGC 57.853 45.000 0.00 0.00 0.00 4.58
2354 2457 4.178545 AGATTTGCACCCAGAAAAATCG 57.821 40.909 0.00 0.00 41.65 3.34
2355 2458 6.073058 GGAAAAGATTTGCACCCAGAAAAATC 60.073 38.462 0.00 0.00 38.65 2.17
2356 2459 5.764686 GGAAAAGATTTGCACCCAGAAAAAT 59.235 36.000 0.00 0.00 0.00 1.82
2357 2460 5.104569 AGGAAAAGATTTGCACCCAGAAAAA 60.105 36.000 0.00 0.00 0.00 1.94
2358 2461 4.408596 AGGAAAAGATTTGCACCCAGAAAA 59.591 37.500 0.00 0.00 0.00 2.29
2359 2462 3.966665 AGGAAAAGATTTGCACCCAGAAA 59.033 39.130 0.00 0.00 0.00 2.52
2360 2463 3.575805 AGGAAAAGATTTGCACCCAGAA 58.424 40.909 0.00 0.00 0.00 3.02
2361 2464 3.243359 AGGAAAAGATTTGCACCCAGA 57.757 42.857 0.00 0.00 0.00 3.86
2362 2465 3.575687 AGAAGGAAAAGATTTGCACCCAG 59.424 43.478 0.00 0.00 0.00 4.45
2363 2466 3.321682 CAGAAGGAAAAGATTTGCACCCA 59.678 43.478 0.00 0.00 0.00 4.51
2364 2467 3.321968 ACAGAAGGAAAAGATTTGCACCC 59.678 43.478 0.00 0.00 0.00 4.61
2365 2468 4.590850 ACAGAAGGAAAAGATTTGCACC 57.409 40.909 0.00 0.00 0.00 5.01
2366 2469 6.908870 AAAACAGAAGGAAAAGATTTGCAC 57.091 33.333 0.00 0.00 0.00 4.57
2389 2492 9.257651 TCTTTTCGTTTCACTTTTTACCAAAAA 57.742 25.926 0.00 0.00 37.99 1.94
2390 2493 8.813643 TCTTTTCGTTTCACTTTTTACCAAAA 57.186 26.923 0.00 0.00 0.00 2.44
2391 2494 8.989653 ATCTTTTCGTTTCACTTTTTACCAAA 57.010 26.923 0.00 0.00 0.00 3.28
2392 2495 8.989653 AATCTTTTCGTTTCACTTTTTACCAA 57.010 26.923 0.00 0.00 0.00 3.67
2393 2496 8.989653 AAATCTTTTCGTTTCACTTTTTACCA 57.010 26.923 0.00 0.00 0.00 3.25
2394 2497 9.683651 CAAAATCTTTTCGTTTCACTTTTTACC 57.316 29.630 0.00 0.00 0.00 2.85
2397 2500 9.592720 CAACAAAATCTTTTCGTTTCACTTTTT 57.407 25.926 0.00 0.00 0.00 1.94
2398 2501 7.744276 GCAACAAAATCTTTTCGTTTCACTTTT 59.256 29.630 0.00 0.00 0.00 2.27
2399 2502 7.233689 GCAACAAAATCTTTTCGTTTCACTTT 58.766 30.769 0.00 0.00 0.00 2.66
2400 2503 6.183360 GGCAACAAAATCTTTTCGTTTCACTT 60.183 34.615 0.00 0.00 0.00 3.16
2401 2504 5.290885 GGCAACAAAATCTTTTCGTTTCACT 59.709 36.000 0.00 0.00 0.00 3.41
2402 2505 5.489335 GGCAACAAAATCTTTTCGTTTCAC 58.511 37.500 0.00 0.00 0.00 3.18
2403 2506 4.568760 GGGCAACAAAATCTTTTCGTTTCA 59.431 37.500 0.00 0.00 39.74 2.69
2404 2507 4.808895 AGGGCAACAAAATCTTTTCGTTTC 59.191 37.500 0.00 0.00 39.74 2.78
2405 2508 4.765273 AGGGCAACAAAATCTTTTCGTTT 58.235 34.783 0.00 0.00 39.74 3.60
2406 2509 4.099419 AGAGGGCAACAAAATCTTTTCGTT 59.901 37.500 0.00 0.00 39.74 3.85
2407 2510 3.636764 AGAGGGCAACAAAATCTTTTCGT 59.363 39.130 0.00 0.00 39.74 3.85
2408 2511 4.243007 AGAGGGCAACAAAATCTTTTCG 57.757 40.909 0.00 0.00 39.74 3.46
2409 2512 6.925610 AAAAGAGGGCAACAAAATCTTTTC 57.074 33.333 5.61 0.00 43.24 2.29
2411 2514 5.049828 CGAAAAGAGGGCAACAAAATCTTT 58.950 37.500 0.00 0.00 40.87 2.52
2412 2515 4.501400 CCGAAAAGAGGGCAACAAAATCTT 60.501 41.667 0.00 0.00 39.74 2.40
2413 2516 3.005791 CCGAAAAGAGGGCAACAAAATCT 59.994 43.478 0.00 0.00 39.74 2.40
2414 2517 3.317150 CCGAAAAGAGGGCAACAAAATC 58.683 45.455 0.00 0.00 39.74 2.17
2415 2518 2.037121 CCCGAAAAGAGGGCAACAAAAT 59.963 45.455 0.00 0.00 42.77 1.82
2416 2519 1.410882 CCCGAAAAGAGGGCAACAAAA 59.589 47.619 0.00 0.00 42.77 2.44
2417 2520 1.036707 CCCGAAAAGAGGGCAACAAA 58.963 50.000 0.00 0.00 42.77 2.83
2418 2521 2.727103 CCCGAAAAGAGGGCAACAA 58.273 52.632 0.00 0.00 42.77 2.83
2419 2522 4.492604 CCCGAAAAGAGGGCAACA 57.507 55.556 0.00 0.00 42.77 3.33
2425 2528 2.813179 CGCGCATCCCGAAAAGAGG 61.813 63.158 8.75 0.00 40.02 3.69
2426 2529 2.703409 CGCGCATCCCGAAAAGAG 59.297 61.111 8.75 0.00 40.02 2.85
2427 2530 2.587322 ATCCGCGCATCCCGAAAAGA 62.587 55.000 8.75 0.00 40.02 2.52
2428 2531 2.180204 ATCCGCGCATCCCGAAAAG 61.180 57.895 8.75 0.00 40.02 2.27
2429 2532 2.124901 ATCCGCGCATCCCGAAAA 60.125 55.556 8.75 0.00 40.02 2.29
2430 2533 2.894879 CATCCGCGCATCCCGAAA 60.895 61.111 8.75 0.00 40.02 3.46
2431 2534 4.155733 ACATCCGCGCATCCCGAA 62.156 61.111 8.75 0.00 40.02 4.30
2432 2535 4.889856 CACATCCGCGCATCCCGA 62.890 66.667 8.75 0.00 40.02 5.14
2434 2537 3.454587 TACCACATCCGCGCATCCC 62.455 63.158 8.75 0.00 0.00 3.85
2435 2538 2.108157 TACCACATCCGCGCATCC 59.892 61.111 8.75 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.