Multiple sequence alignment - TraesCS3D01G038400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G038400 chr3D 100.000 2814 0 0 1 2814 14153801 14156614 0.000000e+00 5197.0
1 TraesCS3D01G038400 chr3A 81.468 1975 141 99 45 1862 22564555 22562649 0.000000e+00 1411.0
2 TraesCS3D01G038400 chr3A 90.395 177 16 1 2408 2584 22561875 22561700 6.060000e-57 231.0
3 TraesCS3D01G038400 chr3B 84.904 1305 108 53 610 1867 20799165 20800427 0.000000e+00 1236.0
4 TraesCS3D01G038400 chr3B 76.938 516 28 33 1 484 20798497 20798953 2.840000e-50 209.0
5 TraesCS3D01G038400 chr4B 100.000 33 0 0 2779 2811 115878427 115878395 8.420000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G038400 chr3D 14153801 14156614 2813 False 5197.0 5197 100.0000 1 2814 1 chr3D.!!$F1 2813
1 TraesCS3D01G038400 chr3A 22561700 22564555 2855 True 821.0 1411 85.9315 45 2584 2 chr3A.!!$R1 2539
2 TraesCS3D01G038400 chr3B 20798497 20800427 1930 False 722.5 1236 80.9210 1 1867 2 chr3B.!!$F1 1866

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
719 917 0.039346 CGTTGCATGCACATCCACAA 60.039 50.0 22.58 0.0 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2697 3245 0.032952 CAAAGACGTCTTCCCCGTGA 59.967 55.0 29.82 0.0 38.92 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 133 4.373116 GAGCCCCACGTCTCGCAA 62.373 66.667 0.00 0.00 0.00 4.85
119 137 2.264480 CCCACGTCTCGCAATCCA 59.736 61.111 0.00 0.00 0.00 3.41
124 142 1.226974 CGTCTCGCAATCCATCGGT 60.227 57.895 0.00 0.00 0.00 4.69
184 203 1.094785 CATGTCGGCCCCTTAAAGTG 58.905 55.000 0.00 0.00 0.00 3.16
189 208 1.165270 CGGCCCCTTAAAGTGAAGTG 58.835 55.000 0.00 0.00 0.00 3.16
190 209 1.545841 GGCCCCTTAAAGTGAAGTGG 58.454 55.000 0.00 0.00 0.00 4.00
193 212 3.344515 GCCCCTTAAAGTGAAGTGGTAG 58.655 50.000 0.00 0.00 0.00 3.18
194 213 3.872630 GCCCCTTAAAGTGAAGTGGTAGG 60.873 52.174 0.00 0.00 0.00 3.18
197 216 4.286291 CCCTTAAAGTGAAGTGGTAGGAGT 59.714 45.833 0.00 0.00 0.00 3.85
198 217 5.482878 CCCTTAAAGTGAAGTGGTAGGAGTA 59.517 44.000 0.00 0.00 0.00 2.59
199 218 6.396450 CCTTAAAGTGAAGTGGTAGGAGTAC 58.604 44.000 0.00 0.00 0.00 2.73
200 219 6.210984 CCTTAAAGTGAAGTGGTAGGAGTACT 59.789 42.308 0.00 0.00 0.00 2.73
201 220 7.395489 CCTTAAAGTGAAGTGGTAGGAGTACTA 59.605 40.741 0.00 0.00 0.00 1.82
202 221 6.837471 AAAGTGAAGTGGTAGGAGTACTAG 57.163 41.667 0.00 0.00 30.77 2.57
246 268 0.305922 GAGATACGACCGGTGGTACG 59.694 60.000 28.83 20.33 35.25 3.67
247 269 0.392998 AGATACGACCGGTGGTACGT 60.393 55.000 28.83 24.64 40.42 3.57
248 270 0.248215 GATACGACCGGTGGTACGTG 60.248 60.000 28.83 5.07 38.84 4.49
249 271 2.270297 ATACGACCGGTGGTACGTGC 62.270 60.000 28.83 3.51 38.84 5.34
259 281 2.663852 GTACGTGCCGCAACCACT 60.664 61.111 0.00 0.00 0.00 4.00
350 399 4.258543 TGATGATAGAAAACCGGTGGAAC 58.741 43.478 8.52 0.00 0.00 3.62
354 403 2.430248 AGAAAACCGGTGGAACTTGT 57.570 45.000 8.52 0.00 36.74 3.16
395 447 0.889994 ATGCATGCATTGTTGGACGT 59.110 45.000 27.46 1.89 31.82 4.34
396 448 0.672889 TGCATGCATTGTTGGACGTT 59.327 45.000 18.46 0.00 0.00 3.99
397 449 1.882623 TGCATGCATTGTTGGACGTTA 59.117 42.857 18.46 0.00 0.00 3.18
398 450 2.250188 GCATGCATTGTTGGACGTTAC 58.750 47.619 14.21 0.00 0.00 2.50
399 451 2.351253 GCATGCATTGTTGGACGTTACA 60.351 45.455 14.21 0.00 0.00 2.41
400 452 3.673052 GCATGCATTGTTGGACGTTACAT 60.673 43.478 14.21 0.00 0.00 2.29
401 453 4.438065 GCATGCATTGTTGGACGTTACATA 60.438 41.667 14.21 0.00 0.00 2.29
402 454 4.671880 TGCATTGTTGGACGTTACATAC 57.328 40.909 0.00 0.00 0.00 2.39
403 455 4.065789 TGCATTGTTGGACGTTACATACA 58.934 39.130 0.00 0.00 0.00 2.29
404 456 4.083749 TGCATTGTTGGACGTTACATACAC 60.084 41.667 0.00 0.00 0.00 2.90
405 457 4.634000 CATTGTTGGACGTTACATACACG 58.366 43.478 0.00 0.00 43.52 4.49
406 458 3.639716 TGTTGGACGTTACATACACGA 57.360 42.857 0.00 0.00 40.20 4.35
407 459 3.567530 TGTTGGACGTTACATACACGAG 58.432 45.455 0.00 0.00 40.20 4.18
417 469 3.071786 ACATACACGAGCGAATCTCTG 57.928 47.619 0.00 0.00 39.70 3.35
420 472 1.983972 ACACGAGCGAATCTCTGAAC 58.016 50.000 0.00 0.00 39.70 3.18
423 475 3.102276 CACGAGCGAATCTCTGAACTAC 58.898 50.000 0.00 0.00 39.70 2.73
574 724 2.136728 TGCGTACGTGCAACAATTAGT 58.863 42.857 17.90 0.00 43.02 2.24
614 788 1.754436 TTGTCACGAAACGCACGGAC 61.754 55.000 0.00 0.00 34.34 4.79
719 917 0.039346 CGTTGCATGCACATCCACAA 60.039 50.000 22.58 0.00 0.00 3.33
724 922 2.290197 TGCATGCACATCCACAAGAGTA 60.290 45.455 18.46 0.00 0.00 2.59
810 1019 4.041917 CGGCAGCCGCATGTGTTT 62.042 61.111 23.64 0.00 41.17 2.83
819 1028 3.418913 CATGTGTTTCGGCGGCGA 61.419 61.111 31.46 31.46 0.00 5.54
974 1197 1.299541 CCCAAGCACCATCGTATCAC 58.700 55.000 0.00 0.00 0.00 3.06
977 1200 1.134401 CAAGCACCATCGTATCACCCT 60.134 52.381 0.00 0.00 0.00 4.34
978 1201 2.082140 AGCACCATCGTATCACCCTA 57.918 50.000 0.00 0.00 0.00 3.53
979 1202 1.964223 AGCACCATCGTATCACCCTAG 59.036 52.381 0.00 0.00 0.00 3.02
1023 1252 1.379176 CTCTCACTCTCCCCTCGCA 60.379 63.158 0.00 0.00 0.00 5.10
1054 1294 2.242113 CGCAAGAAGCAGAGCAAGT 58.758 52.632 0.00 0.00 46.13 3.16
1055 1295 0.110328 CGCAAGAAGCAGAGCAAGTG 60.110 55.000 0.00 0.00 46.13 3.16
1056 1296 0.240411 GCAAGAAGCAGAGCAAGTGG 59.760 55.000 0.00 0.00 44.79 4.00
1057 1297 0.240411 CAAGAAGCAGAGCAAGTGGC 59.760 55.000 0.00 0.00 45.30 5.01
1058 1298 0.892814 AAGAAGCAGAGCAAGTGGCC 60.893 55.000 0.00 0.00 46.50 5.36
1217 1464 3.056328 GCGGGTGGCAAGAAGACC 61.056 66.667 0.00 0.00 42.87 3.85
1349 1608 4.565850 GCGGGAGGAGGAGGGGAT 62.566 72.222 0.00 0.00 0.00 3.85
1476 1744 2.915659 ACTTCCTGTCCGTCGGCA 60.916 61.111 6.34 7.31 0.00 5.69
1610 1909 2.568090 GCGGCATTCCACCACTTG 59.432 61.111 0.00 0.00 0.00 3.16
1624 1926 4.561105 CACCACTTGGAGAGAGAAACTAC 58.439 47.826 1.14 0.00 38.94 2.73
1625 1927 4.282195 CACCACTTGGAGAGAGAAACTACT 59.718 45.833 1.14 0.00 38.94 2.57
1626 1928 5.477291 CACCACTTGGAGAGAGAAACTACTA 59.523 44.000 1.14 0.00 38.94 1.82
1627 1929 5.477637 ACCACTTGGAGAGAGAAACTACTAC 59.522 44.000 1.14 0.00 38.94 2.73
1628 1930 5.712917 CCACTTGGAGAGAGAAACTACTACT 59.287 44.000 0.00 0.00 37.39 2.57
1629 1931 6.885376 CCACTTGGAGAGAGAAACTACTACTA 59.115 42.308 0.00 0.00 37.39 1.82
1631 1933 8.962679 CACTTGGAGAGAGAAACTACTACTAAT 58.037 37.037 0.00 0.00 0.00 1.73
1649 1951 9.523168 ACTACTAATCTATGAGGTTACCATCTC 57.477 37.037 3.51 0.00 0.00 2.75
1650 1952 9.521841 CTACTAATCTATGAGGTTACCATCTCA 57.478 37.037 3.51 0.00 43.15 3.27
1659 1961 7.437713 TGAGGTTACCATCTCATAGATTTGT 57.562 36.000 3.51 0.00 35.37 2.83
1660 1962 7.275183 TGAGGTTACCATCTCATAGATTTGTG 58.725 38.462 3.51 0.00 35.37 3.33
1661 1963 6.058183 AGGTTACCATCTCATAGATTTGTGC 58.942 40.000 3.51 0.00 31.32 4.57
1662 1964 6.058183 GGTTACCATCTCATAGATTTGTGCT 58.942 40.000 0.00 0.00 31.32 4.40
1663 1965 7.071196 AGGTTACCATCTCATAGATTTGTGCTA 59.929 37.037 3.51 0.00 31.32 3.49
1664 1966 7.171678 GGTTACCATCTCATAGATTTGTGCTAC 59.828 40.741 0.00 0.00 31.32 3.58
1665 1967 5.615289 ACCATCTCATAGATTTGTGCTACC 58.385 41.667 0.00 0.00 31.32 3.18
1666 1968 5.130975 ACCATCTCATAGATTTGTGCTACCA 59.869 40.000 0.00 0.00 31.32 3.25
1667 1969 5.699915 CCATCTCATAGATTTGTGCTACCAG 59.300 44.000 0.00 0.00 31.32 4.00
1668 1970 4.697514 TCTCATAGATTTGTGCTACCAGC 58.302 43.478 0.00 0.00 42.82 4.85
1669 1971 5.163269 ATCTCATAGATTTGTGCTACCAGCA 60.163 40.000 0.00 0.00 39.52 4.41
1670 1972 6.963348 ATCTCATAGATTTGTGCTACCAGCAG 60.963 42.308 0.08 0.00 41.43 4.24
1697 1999 0.948678 GCTTTTGCGGTACAGGAACA 59.051 50.000 0.00 0.00 34.86 3.18
1714 2016 2.249309 ACAGGGGAACGGACTAATCT 57.751 50.000 0.00 0.00 0.00 2.40
1716 2018 3.924922 ACAGGGGAACGGACTAATCTAT 58.075 45.455 0.00 0.00 0.00 1.98
1729 2031 6.434652 CGGACTAATCTATGAGGTTACCATCT 59.565 42.308 3.51 0.00 0.00 2.90
1740 2042 8.653036 ATGAGGTTACCATCTACTACTAATCC 57.347 38.462 3.51 0.00 0.00 3.01
1743 2045 7.011382 AGGTTACCATCTACTACTAATCCCAG 58.989 42.308 3.51 0.00 0.00 4.45
1805 2112 6.740411 ATGCAAGCAAAGAACAAAGAAAAA 57.260 29.167 0.00 0.00 0.00 1.94
1808 2115 7.592051 TGCAAGCAAAGAACAAAGAAAAATTT 58.408 26.923 0.00 0.00 0.00 1.82
1886 2213 2.417933 GCTCATTCTCATGTGCGTTCTT 59.582 45.455 0.00 0.00 39.46 2.52
1888 2215 3.663025 TCATTCTCATGTGCGTTCTTCA 58.337 40.909 0.00 0.00 0.00 3.02
1889 2216 4.064388 TCATTCTCATGTGCGTTCTTCAA 58.936 39.130 0.00 0.00 0.00 2.69
1891 2218 1.800586 TCTCATGTGCGTTCTTCAAGC 59.199 47.619 0.00 0.00 0.00 4.01
1894 2221 2.553602 TCATGTGCGTTCTTCAAGCAAT 59.446 40.909 0.00 0.00 42.93 3.56
1896 2223 1.055338 GTGCGTTCTTCAAGCAATGC 58.945 50.000 0.00 0.00 42.93 3.56
1905 2232 3.490759 AAGCAATGCGGCTCGTCG 61.491 61.111 0.00 0.00 45.07 5.12
1917 2244 1.891060 GCTCGTCGCCAGAGTTGTTG 61.891 60.000 0.00 0.00 37.99 3.33
1918 2245 1.891060 CTCGTCGCCAGAGTTGTTGC 61.891 60.000 0.00 0.00 0.00 4.17
1923 2250 4.085876 CCAGAGTTGTTGCTGGGG 57.914 61.111 0.00 0.00 46.24 4.96
1927 2254 2.582052 CAGAGTTGTTGCTGGGGTTAA 58.418 47.619 0.00 0.00 0.00 2.01
1928 2255 2.293399 CAGAGTTGTTGCTGGGGTTAAC 59.707 50.000 0.00 0.00 0.00 2.01
1929 2256 2.174854 AGAGTTGTTGCTGGGGTTAACT 59.825 45.455 5.42 0.00 0.00 2.24
1930 2257 3.393278 AGAGTTGTTGCTGGGGTTAACTA 59.607 43.478 5.42 0.00 0.00 2.24
1931 2258 3.751518 AGTTGTTGCTGGGGTTAACTAG 58.248 45.455 5.42 3.46 0.00 2.57
1932 2259 2.817844 GTTGTTGCTGGGGTTAACTAGG 59.182 50.000 5.42 0.00 0.00 3.02
1940 2302 1.624391 GGGGTTAACTAGGGCTCCTGA 60.624 57.143 5.42 0.00 34.61 3.86
1954 2316 1.151450 CCTGAGGGTGGCAAACTGT 59.849 57.895 0.00 0.00 0.00 3.55
1957 2319 1.072331 CTGAGGGTGGCAAACTGTACT 59.928 52.381 0.00 0.00 0.00 2.73
1960 2322 2.038033 GAGGGTGGCAAACTGTACTGTA 59.962 50.000 5.76 0.00 0.00 2.74
2005 2372 2.882132 GGGACGAAATTTGGGCGG 59.118 61.111 5.14 0.00 0.00 6.13
2006 2373 2.706834 GGGACGAAATTTGGGCGGG 61.707 63.158 5.14 0.00 0.00 6.13
2007 2374 2.180769 GACGAAATTTGGGCGGGC 59.819 61.111 5.14 0.00 0.00 6.13
2008 2375 2.282887 ACGAAATTTGGGCGGGCT 60.283 55.556 5.14 0.00 0.00 5.19
2009 2376 1.001887 ACGAAATTTGGGCGGGCTA 60.002 52.632 5.14 0.00 0.00 3.93
2010 2377 1.029947 ACGAAATTTGGGCGGGCTAG 61.030 55.000 5.14 0.00 0.00 3.42
2011 2378 1.437573 GAAATTTGGGCGGGCTAGC 59.562 57.895 6.04 6.04 0.00 3.42
2036 2429 2.719321 GTTTTCGCGCGCAAACGA 60.719 55.556 34.48 17.47 43.93 3.85
2037 2430 2.072654 GTTTTCGCGCGCAAACGAT 61.073 52.632 34.48 0.00 43.93 3.73
2054 2447 3.365291 ATGCTAGAACGGCGCGGAA 62.365 57.895 22.76 3.20 0.00 4.30
2055 2448 2.812178 GCTAGAACGGCGCGGAAA 60.812 61.111 22.76 2.85 0.00 3.13
2056 2449 2.385091 GCTAGAACGGCGCGGAAAA 61.385 57.895 22.76 3.20 0.00 2.29
2066 2459 0.872388 GCGCGGAAAAGAAAGGAAGA 59.128 50.000 8.83 0.00 0.00 2.87
2068 2461 1.135944 CGCGGAAAAGAAAGGAAGAGC 60.136 52.381 0.00 0.00 0.00 4.09
2069 2462 1.880027 GCGGAAAAGAAAGGAAGAGCA 59.120 47.619 0.00 0.00 0.00 4.26
2070 2463 2.293399 GCGGAAAAGAAAGGAAGAGCAA 59.707 45.455 0.00 0.00 0.00 3.91
2122 2515 2.100631 GGAGTGCGTTCCCATGTCG 61.101 63.158 0.00 0.00 0.00 4.35
2127 2520 2.867472 CGTTCCCATGTCGGCAAC 59.133 61.111 0.00 0.00 0.00 4.17
2130 2523 0.889186 GTTCCCATGTCGGCAACTGT 60.889 55.000 0.00 0.00 0.00 3.55
2133 2526 1.577328 CCCATGTCGGCAACTGTCAC 61.577 60.000 0.00 0.00 0.00 3.67
2135 2528 0.514255 CATGTCGGCAACTGTCACAG 59.486 55.000 2.22 2.22 37.52 3.66
2194 2588 2.018544 CGTTCCCGTGTCAGCAAAA 58.981 52.632 0.00 0.00 0.00 2.44
2216 2610 1.885871 GGCTGAATCGCCTTGCTTT 59.114 52.632 8.46 0.00 46.63 3.51
2221 2615 2.746362 CTGAATCGCCTTGCTTTTCTCT 59.254 45.455 0.00 0.00 0.00 3.10
2225 2619 3.120321 TCGCCTTGCTTTTCTCTGTTA 57.880 42.857 0.00 0.00 0.00 2.41
2226 2620 3.472652 TCGCCTTGCTTTTCTCTGTTAA 58.527 40.909 0.00 0.00 0.00 2.01
2228 2622 3.003275 CGCCTTGCTTTTCTCTGTTAACA 59.997 43.478 8.28 8.28 0.00 2.41
2231 2625 5.278463 GCCTTGCTTTTCTCTGTTAACATGA 60.278 40.000 9.13 7.96 0.00 3.07
2233 2627 6.638468 CCTTGCTTTTCTCTGTTAACATGAAC 59.362 38.462 18.00 11.03 0.00 3.18
2237 2631 6.017109 GCTTTTCTCTGTTAACATGAACCAGA 60.017 38.462 18.00 4.47 0.00 3.86
2238 2632 7.468631 GCTTTTCTCTGTTAACATGAACCAGAA 60.469 37.037 18.00 11.96 30.79 3.02
2242 2636 7.054124 TCTCTGTTAACATGAACCAGAAGTTT 58.946 34.615 9.13 0.00 39.40 2.66
2243 2637 7.556275 TCTCTGTTAACATGAACCAGAAGTTTT 59.444 33.333 9.13 0.00 39.40 2.43
2244 2638 7.703328 TCTGTTAACATGAACCAGAAGTTTTC 58.297 34.615 9.13 0.00 39.40 2.29
2245 2639 7.556275 TCTGTTAACATGAACCAGAAGTTTTCT 59.444 33.333 9.13 0.00 39.40 2.52
2246 2640 8.740123 TGTTAACATGAACCAGAAGTTTTCTA 57.260 30.769 3.59 0.00 39.40 2.10
2247 2641 8.617809 TGTTAACATGAACCAGAAGTTTTCTAC 58.382 33.333 3.59 0.00 39.40 2.59
2248 2642 8.837389 GTTAACATGAACCAGAAGTTTTCTACT 58.163 33.333 0.00 0.00 39.40 2.57
2250 2644 8.974060 AACATGAACCAGAAGTTTTCTACTAA 57.026 30.769 0.00 0.00 39.40 2.24
2319 2836 5.522456 TCATCACATGTCAAAGAGCAAAAC 58.478 37.500 0.00 0.00 0.00 2.43
2325 2842 5.922544 ACATGTCAAAGAGCAAAACATTAGC 59.077 36.000 0.00 0.00 0.00 3.09
2332 2849 0.885196 GCAAAACATTAGCCCGGACA 59.115 50.000 0.73 0.00 0.00 4.02
2338 2855 2.504367 ACATTAGCCCGGACATAATGC 58.496 47.619 22.59 9.94 39.45 3.56
2339 2856 2.158682 ACATTAGCCCGGACATAATGCA 60.159 45.455 22.59 0.00 39.45 3.96
2340 2857 2.719531 TTAGCCCGGACATAATGCAA 57.280 45.000 0.73 0.00 0.00 4.08
2343 2860 1.750778 AGCCCGGACATAATGCAAAAG 59.249 47.619 0.73 0.00 0.00 2.27
2346 2863 3.367910 GCCCGGACATAATGCAAAAGAAA 60.368 43.478 0.73 0.00 0.00 2.52
2348 2865 5.418676 CCCGGACATAATGCAAAAGAAAAT 58.581 37.500 0.73 0.00 0.00 1.82
2349 2866 5.519927 CCCGGACATAATGCAAAAGAAAATC 59.480 40.000 0.73 0.00 0.00 2.17
2363 2881 7.290118 CAAAAGAAAATCCAATAAACCAAGCG 58.710 34.615 0.00 0.00 0.00 4.68
2370 2888 3.938963 TCCAATAAACCAAGCGACATCTC 59.061 43.478 0.00 0.00 0.00 2.75
2381 2899 3.851098 AGCGACATCTCTTTCCTACAAC 58.149 45.455 0.00 0.00 0.00 3.32
2387 2905 5.930135 ACATCTCTTTCCTACAACAAGTGT 58.070 37.500 0.00 0.00 44.82 3.55
2388 2906 5.992217 ACATCTCTTTCCTACAACAAGTGTC 59.008 40.000 0.00 0.00 41.98 3.67
2389 2907 5.871396 TCTCTTTCCTACAACAAGTGTCT 57.129 39.130 0.00 0.00 41.98 3.41
2390 2908 6.971726 TCTCTTTCCTACAACAAGTGTCTA 57.028 37.500 0.00 0.00 41.98 2.59
2391 2909 7.540474 TCTCTTTCCTACAACAAGTGTCTAT 57.460 36.000 0.00 0.00 41.98 1.98
2393 2911 7.451877 TCTCTTTCCTACAACAAGTGTCTATCT 59.548 37.037 0.00 0.00 41.98 1.98
2394 2912 7.603651 TCTTTCCTACAACAAGTGTCTATCTC 58.396 38.462 0.00 0.00 41.98 2.75
2395 2913 6.911250 TTCCTACAACAAGTGTCTATCTCA 57.089 37.500 0.00 0.00 41.98 3.27
2396 2914 6.268825 TCCTACAACAAGTGTCTATCTCAC 57.731 41.667 0.00 0.00 41.98 3.51
2397 2915 6.010850 TCCTACAACAAGTGTCTATCTCACT 58.989 40.000 0.00 0.00 46.30 3.41
2398 2916 7.173032 TCCTACAACAAGTGTCTATCTCACTA 58.827 38.462 0.00 0.00 44.03 2.74
2399 2917 7.120873 TCCTACAACAAGTGTCTATCTCACTAC 59.879 40.741 0.00 0.00 44.03 2.73
2400 2918 6.026947 ACAACAAGTGTCTATCTCACTACC 57.973 41.667 0.00 0.00 44.03 3.18
2401 2919 5.538813 ACAACAAGTGTCTATCTCACTACCA 59.461 40.000 0.00 0.00 44.03 3.25
2402 2920 5.906113 ACAAGTGTCTATCTCACTACCAG 57.094 43.478 0.00 0.00 44.03 4.00
2403 2921 5.326069 ACAAGTGTCTATCTCACTACCAGT 58.674 41.667 0.00 0.00 44.03 4.00
2425 2973 6.816640 CAGTGATTTTTCTATCCTACGAACCA 59.183 38.462 0.00 0.00 0.00 3.67
2448 2996 7.156673 CCAAAGATGATGAAAAACTTGGTGAT 58.843 34.615 0.00 0.00 0.00 3.06
2450 2998 6.276832 AGATGATGAAAAACTTGGTGATGG 57.723 37.500 0.00 0.00 0.00 3.51
2451 2999 6.012113 AGATGATGAAAAACTTGGTGATGGA 58.988 36.000 0.00 0.00 0.00 3.41
2452 3000 5.710513 TGATGAAAAACTTGGTGATGGAG 57.289 39.130 0.00 0.00 0.00 3.86
2471 3019 7.396055 TGATGGAGAAAACATTTTTAGGGTAGG 59.604 37.037 0.00 0.00 0.00 3.18
2486 3034 2.581246 GGGTAGGGGAGAGATGGTTTTT 59.419 50.000 0.00 0.00 0.00 1.94
2522 3070 5.704978 TCTTGCTGCTTTAACACATGATGTA 59.295 36.000 0.00 0.00 42.31 2.29
2533 3081 3.255642 ACACATGATGTAAAAGTGGTGCC 59.744 43.478 0.00 0.00 40.88 5.01
2536 3084 4.343526 ACATGATGTAAAAGTGGTGCCAAA 59.656 37.500 0.00 0.00 0.00 3.28
2537 3085 5.163364 ACATGATGTAAAAGTGGTGCCAAAA 60.163 36.000 0.00 0.00 0.00 2.44
2538 3086 5.344743 TGATGTAAAAGTGGTGCCAAAAA 57.655 34.783 0.00 0.00 0.00 1.94
2568 3116 7.649533 AAACTCAAGCATGATTCATTCCATA 57.350 32.000 0.00 0.00 34.37 2.74
2621 3169 9.751542 AACATTTACCATTAAACATCAAAACGA 57.248 25.926 0.00 0.00 29.77 3.85
2622 3170 9.187455 ACATTTACCATTAAACATCAAAACGAC 57.813 29.630 0.00 0.00 29.77 4.34
2623 3171 9.186323 CATTTACCATTAAACATCAAAACGACA 57.814 29.630 0.00 0.00 29.77 4.35
2624 3172 9.921637 ATTTACCATTAAACATCAAAACGACAT 57.078 25.926 0.00 0.00 29.77 3.06
2625 3173 9.751542 TTTACCATTAAACATCAAAACGACATT 57.248 25.926 0.00 0.00 0.00 2.71
2627 3175 8.736751 ACCATTAAACATCAAAACGACATTAC 57.263 30.769 0.00 0.00 0.00 1.89
2628 3176 8.353684 ACCATTAAACATCAAAACGACATTACA 58.646 29.630 0.00 0.00 0.00 2.41
2629 3177 9.186323 CCATTAAACATCAAAACGACATTACAA 57.814 29.630 0.00 0.00 0.00 2.41
2671 3219 9.740239 TTTACTATGATACGTCATCAAACTACC 57.260 33.333 10.39 0.00 46.66 3.18
2672 3220 7.342769 ACTATGATACGTCATCAAACTACCA 57.657 36.000 10.39 0.00 46.66 3.25
2673 3221 7.201145 ACTATGATACGTCATCAAACTACCAC 58.799 38.462 10.39 0.00 46.66 4.16
2674 3222 5.654603 TGATACGTCATCAAACTACCACT 57.345 39.130 0.00 0.00 40.80 4.00
2675 3223 5.647589 TGATACGTCATCAAACTACCACTC 58.352 41.667 0.00 0.00 40.80 3.51
2676 3224 3.314541 ACGTCATCAAACTACCACTCC 57.685 47.619 0.00 0.00 0.00 3.85
2677 3225 2.897969 ACGTCATCAAACTACCACTCCT 59.102 45.455 0.00 0.00 0.00 3.69
2678 3226 3.056749 ACGTCATCAAACTACCACTCCTC 60.057 47.826 0.00 0.00 0.00 3.71
2679 3227 3.056821 CGTCATCAAACTACCACTCCTCA 60.057 47.826 0.00 0.00 0.00 3.86
2680 3228 4.382040 CGTCATCAAACTACCACTCCTCAT 60.382 45.833 0.00 0.00 0.00 2.90
2681 3229 5.491982 GTCATCAAACTACCACTCCTCATT 58.508 41.667 0.00 0.00 0.00 2.57
2682 3230 5.940470 GTCATCAAACTACCACTCCTCATTT 59.060 40.000 0.00 0.00 0.00 2.32
2683 3231 6.431234 GTCATCAAACTACCACTCCTCATTTT 59.569 38.462 0.00 0.00 0.00 1.82
2684 3232 7.004086 TCATCAAACTACCACTCCTCATTTTT 58.996 34.615 0.00 0.00 0.00 1.94
2702 3250 2.093306 TTTGCAGTAGACCATCACGG 57.907 50.000 0.00 0.00 42.50 4.94
2703 3251 0.249120 TTGCAGTAGACCATCACGGG 59.751 55.000 0.00 0.00 40.22 5.28
2704 3252 1.144057 GCAGTAGACCATCACGGGG 59.856 63.158 0.00 0.00 40.22 5.73
2705 3253 1.327690 GCAGTAGACCATCACGGGGA 61.328 60.000 0.00 0.00 40.22 4.81
2706 3254 1.191535 CAGTAGACCATCACGGGGAA 58.808 55.000 0.00 0.00 40.22 3.97
2707 3255 1.137086 CAGTAGACCATCACGGGGAAG 59.863 57.143 0.00 0.00 40.22 3.46
2708 3256 1.006758 AGTAGACCATCACGGGGAAGA 59.993 52.381 0.00 0.00 40.22 2.87
2709 3257 1.136500 GTAGACCATCACGGGGAAGAC 59.864 57.143 0.00 0.00 40.22 3.01
2710 3258 1.153628 GACCATCACGGGGAAGACG 60.154 63.158 0.00 0.00 40.22 4.18
2711 3259 1.885163 GACCATCACGGGGAAGACGT 61.885 60.000 0.00 0.00 46.82 4.34
2712 3260 1.153628 CCATCACGGGGAAGACGTC 60.154 63.158 7.70 7.70 43.58 4.34
2713 3261 1.605058 CCATCACGGGGAAGACGTCT 61.605 60.000 13.58 13.58 43.58 4.18
2714 3262 0.246635 CATCACGGGGAAGACGTCTT 59.753 55.000 30.12 30.12 43.58 3.01
2715 3263 0.974383 ATCACGGGGAAGACGTCTTT 59.026 50.000 30.22 15.20 43.58 2.52
2716 3264 0.032952 TCACGGGGAAGACGTCTTTG 59.967 55.000 30.22 23.00 43.58 2.77
2717 3265 1.301479 ACGGGGAAGACGTCTTTGC 60.301 57.895 30.22 18.74 41.25 3.68
2718 3266 2.380410 CGGGGAAGACGTCTTTGCG 61.380 63.158 30.22 4.42 36.11 4.85
2720 3268 1.566018 GGGGAAGACGTCTTTGCGTG 61.566 60.000 30.22 0.00 45.79 5.34
2721 3269 1.204312 GGAAGACGTCTTTGCGTGC 59.796 57.895 30.22 16.65 45.79 5.34
2722 3270 1.154836 GAAGACGTCTTTGCGTGCG 60.155 57.895 30.22 0.00 45.79 5.34
2723 3271 3.223435 AAGACGTCTTTGCGTGCGC 62.223 57.895 24.93 9.85 45.79 6.09
2735 3283 3.192922 GTGCGCACGGTACCCATC 61.193 66.667 26.77 0.00 0.00 3.51
2736 3284 3.696676 TGCGCACGGTACCCATCA 61.697 61.111 5.66 0.00 0.00 3.07
2737 3285 2.435234 GCGCACGGTACCCATCAA 60.435 61.111 6.25 0.00 0.00 2.57
2738 3286 2.036006 GCGCACGGTACCCATCAAA 61.036 57.895 6.25 0.00 0.00 2.69
2739 3287 1.373590 GCGCACGGTACCCATCAAAT 61.374 55.000 6.25 0.00 0.00 2.32
2740 3288 1.091537 CGCACGGTACCCATCAAATT 58.908 50.000 6.25 0.00 0.00 1.82
2741 3289 1.063469 CGCACGGTACCCATCAAATTC 59.937 52.381 6.25 0.00 0.00 2.17
2742 3290 1.063469 GCACGGTACCCATCAAATTCG 59.937 52.381 6.25 0.00 0.00 3.34
2743 3291 2.352388 CACGGTACCCATCAAATTCGT 58.648 47.619 6.25 0.00 0.00 3.85
2744 3292 2.350498 CACGGTACCCATCAAATTCGTC 59.650 50.000 6.25 0.00 0.00 4.20
2745 3293 2.235402 ACGGTACCCATCAAATTCGTCT 59.765 45.455 6.25 0.00 0.00 4.18
2746 3294 3.267483 CGGTACCCATCAAATTCGTCTT 58.733 45.455 6.25 0.00 0.00 3.01
2747 3295 3.308866 CGGTACCCATCAAATTCGTCTTC 59.691 47.826 6.25 0.00 0.00 2.87
2748 3296 3.308866 GGTACCCATCAAATTCGTCTTCG 59.691 47.826 0.00 0.00 38.55 3.79
2749 3297 3.053831 ACCCATCAAATTCGTCTTCGT 57.946 42.857 0.00 0.00 38.33 3.85
2750 3298 2.742053 ACCCATCAAATTCGTCTTCGTG 59.258 45.455 0.00 0.00 38.33 4.35
2751 3299 3.000041 CCCATCAAATTCGTCTTCGTGA 59.000 45.455 0.00 0.00 38.33 4.35
2752 3300 3.623060 CCCATCAAATTCGTCTTCGTGAT 59.377 43.478 0.00 0.00 38.33 3.06
2753 3301 4.260375 CCCATCAAATTCGTCTTCGTGATC 60.260 45.833 0.00 0.00 38.33 2.92
2754 3302 4.329801 CCATCAAATTCGTCTTCGTGATCA 59.670 41.667 0.00 0.00 38.33 2.92
2755 3303 4.903638 TCAAATTCGTCTTCGTGATCAC 57.096 40.909 16.21 16.21 38.33 3.06
2756 3304 3.678072 TCAAATTCGTCTTCGTGATCACC 59.322 43.478 20.03 4.69 38.33 4.02
2757 3305 2.295253 ATTCGTCTTCGTGATCACCC 57.705 50.000 20.03 0.00 38.33 4.61
2758 3306 0.245539 TTCGTCTTCGTGATCACCCC 59.754 55.000 20.03 2.97 38.33 4.95
2759 3307 0.611062 TCGTCTTCGTGATCACCCCT 60.611 55.000 20.03 0.00 38.33 4.79
2760 3308 0.179134 CGTCTTCGTGATCACCCCTC 60.179 60.000 20.03 6.47 0.00 4.30
2761 3309 0.175989 GTCTTCGTGATCACCCCTCC 59.824 60.000 20.03 2.25 0.00 4.30
2762 3310 1.141881 CTTCGTGATCACCCCTCCG 59.858 63.158 20.03 7.52 0.00 4.63
2763 3311 2.907897 CTTCGTGATCACCCCTCCGC 62.908 65.000 20.03 0.00 0.00 5.54
2764 3312 4.530857 CGTGATCACCCCTCCGCC 62.531 72.222 20.03 0.00 0.00 6.13
2765 3313 4.530857 GTGATCACCCCTCCGCCG 62.531 72.222 15.31 0.00 0.00 6.46
2768 3316 4.880426 ATCACCCCTCCGCCGGAT 62.880 66.667 6.16 0.00 0.00 4.18
2773 3321 3.974757 CCCTCCGCCGGATCGTAC 61.975 72.222 6.16 0.00 0.00 3.67
2774 3322 4.323843 CCTCCGCCGGATCGTACG 62.324 72.222 6.16 9.53 0.00 3.67
2775 3323 3.274586 CTCCGCCGGATCGTACGA 61.275 66.667 21.93 21.93 0.00 3.43
2776 3324 2.823593 TCCGCCGGATCGTACGAA 60.824 61.111 23.56 5.94 0.00 3.85
2777 3325 2.353145 CCGCCGGATCGTACGAAG 60.353 66.667 23.56 15.85 0.00 3.79
2778 3326 2.353145 CGCCGGATCGTACGAAGG 60.353 66.667 23.56 24.09 0.00 3.46
2779 3327 2.657620 GCCGGATCGTACGAAGGC 60.658 66.667 31.87 31.87 36.61 4.35
2780 3328 2.027169 CCGGATCGTACGAAGGCC 59.973 66.667 23.56 20.98 0.00 5.19
2781 3329 2.487532 CCGGATCGTACGAAGGCCT 61.488 63.158 23.56 0.00 0.00 5.19
2782 3330 1.168407 CCGGATCGTACGAAGGCCTA 61.168 60.000 23.56 0.00 0.00 3.93
2783 3331 0.664761 CGGATCGTACGAAGGCCTAA 59.335 55.000 23.56 0.00 0.00 2.69
2784 3332 1.598924 CGGATCGTACGAAGGCCTAAC 60.599 57.143 23.56 2.12 0.00 2.34
2785 3333 1.406539 GGATCGTACGAAGGCCTAACA 59.593 52.381 23.56 0.00 0.00 2.41
2786 3334 2.035576 GGATCGTACGAAGGCCTAACAT 59.964 50.000 23.56 0.52 0.00 2.71
2787 3335 2.857592 TCGTACGAAGGCCTAACATC 57.142 50.000 17.11 0.00 0.00 3.06
2788 3336 2.372264 TCGTACGAAGGCCTAACATCT 58.628 47.619 17.11 0.00 0.00 2.90
2789 3337 3.544684 TCGTACGAAGGCCTAACATCTA 58.455 45.455 17.11 0.00 0.00 1.98
2790 3338 3.947196 TCGTACGAAGGCCTAACATCTAA 59.053 43.478 17.11 0.00 0.00 2.10
2791 3339 4.398988 TCGTACGAAGGCCTAACATCTAAA 59.601 41.667 17.11 0.00 0.00 1.85
2792 3340 4.738740 CGTACGAAGGCCTAACATCTAAAG 59.261 45.833 10.44 0.00 0.00 1.85
2793 3341 3.532542 ACGAAGGCCTAACATCTAAAGC 58.467 45.455 5.16 0.00 0.00 3.51
2794 3342 3.197983 ACGAAGGCCTAACATCTAAAGCT 59.802 43.478 5.16 0.00 0.00 3.74
2795 3343 3.557595 CGAAGGCCTAACATCTAAAGCTG 59.442 47.826 5.16 0.00 0.00 4.24
2796 3344 4.680708 CGAAGGCCTAACATCTAAAGCTGA 60.681 45.833 5.16 0.00 0.00 4.26
2797 3345 4.844349 AGGCCTAACATCTAAAGCTGAA 57.156 40.909 1.29 0.00 0.00 3.02
2798 3346 4.775236 AGGCCTAACATCTAAAGCTGAAG 58.225 43.478 1.29 0.00 0.00 3.02
2799 3347 3.879892 GGCCTAACATCTAAAGCTGAAGG 59.120 47.826 0.00 0.00 0.00 3.46
2800 3348 3.313803 GCCTAACATCTAAAGCTGAAGGC 59.686 47.826 12.64 12.64 37.03 4.35
2801 3349 3.879892 CCTAACATCTAAAGCTGAAGGCC 59.120 47.826 0.00 0.00 43.05 5.19
2802 3350 2.426842 ACATCTAAAGCTGAAGGCCC 57.573 50.000 0.00 0.00 43.05 5.80
2803 3351 1.064389 ACATCTAAAGCTGAAGGCCCC 60.064 52.381 0.00 0.00 43.05 5.80
2804 3352 1.064463 CATCTAAAGCTGAAGGCCCCA 60.064 52.381 0.00 0.00 43.05 4.96
2805 3353 1.072266 TCTAAAGCTGAAGGCCCCAA 58.928 50.000 0.00 0.00 43.05 4.12
2806 3354 1.177401 CTAAAGCTGAAGGCCCCAAC 58.823 55.000 0.00 0.00 43.05 3.77
2807 3355 0.251608 TAAAGCTGAAGGCCCCAACC 60.252 55.000 0.00 0.00 43.05 3.77
2808 3356 2.310930 AAAGCTGAAGGCCCCAACCA 62.311 55.000 0.00 0.00 43.05 3.67
2809 3357 2.203625 GCTGAAGGCCCCAACCAA 60.204 61.111 0.00 0.00 34.27 3.67
2810 3358 2.278330 GCTGAAGGCCCCAACCAAG 61.278 63.158 0.00 0.00 34.27 3.61
2811 3359 2.203625 TGAAGGCCCCAACCAAGC 60.204 61.111 0.00 0.00 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.671549 TCGACGACGACGCCACAC 62.672 66.667 14.67 0.00 43.81 3.82
36 37 2.215465 TTTATGGCGTCGCGTCAGGA 62.215 55.000 11.75 1.02 46.78 3.86
112 130 0.099436 GCAACTGACCGATGGATTGC 59.901 55.000 0.00 0.00 36.07 3.56
115 133 0.615331 ACAGCAACTGACCGATGGAT 59.385 50.000 0.78 0.00 35.18 3.41
119 137 3.735208 CGAGAATACAGCAACTGACCGAT 60.735 47.826 0.78 0.00 35.18 4.18
124 142 2.826128 AGTCCGAGAATACAGCAACTGA 59.174 45.455 0.78 0.00 35.18 3.41
184 203 2.957680 GGGCTAGTACTCCTACCACTTC 59.042 54.545 0.00 0.00 0.00 3.01
189 208 1.545204 CGAGGGGCTAGTACTCCTACC 60.545 61.905 0.00 0.00 0.00 3.18
190 209 1.142667 ACGAGGGGCTAGTACTCCTAC 59.857 57.143 0.00 0.00 0.00 3.18
193 212 1.165284 CGACGAGGGGCTAGTACTCC 61.165 65.000 0.00 0.00 0.00 3.85
194 213 0.179062 TCGACGAGGGGCTAGTACTC 60.179 60.000 0.00 0.00 0.00 2.59
197 216 0.602106 CGATCGACGAGGGGCTAGTA 60.602 60.000 10.26 0.00 45.77 1.82
198 217 1.892862 CGATCGACGAGGGGCTAGT 60.893 63.158 10.26 0.00 45.77 2.57
199 218 2.947542 CGATCGACGAGGGGCTAG 59.052 66.667 10.26 0.00 45.77 3.42
200 219 3.285215 GCGATCGACGAGGGGCTA 61.285 66.667 21.57 0.00 45.77 3.93
202 221 2.345880 TAAAGCGATCGACGAGGGGC 62.346 60.000 21.57 6.58 45.77 5.80
246 268 3.660111 GTGGAGTGGTTGCGGCAC 61.660 66.667 0.05 0.00 0.00 5.01
247 269 4.947147 GGTGGAGTGGTTGCGGCA 62.947 66.667 0.00 0.00 0.00 5.69
251 273 4.643387 AGCCGGTGGAGTGGTTGC 62.643 66.667 1.90 0.00 0.00 4.17
252 274 2.358737 GAGCCGGTGGAGTGGTTG 60.359 66.667 1.90 0.00 0.00 3.77
253 275 2.847234 TGAGCCGGTGGAGTGGTT 60.847 61.111 1.90 0.00 0.00 3.67
259 281 2.632544 CGTGTACTGAGCCGGTGGA 61.633 63.158 1.90 0.00 0.00 4.02
323 356 4.445718 CACCGGTTTTCTATCATCATCTCG 59.554 45.833 2.97 0.00 0.00 4.04
331 364 4.069304 CAAGTTCCACCGGTTTTCTATCA 58.931 43.478 2.97 0.00 0.00 2.15
405 457 2.113289 GCGTAGTTCAGAGATTCGCTC 58.887 52.381 0.00 0.00 44.29 5.03
406 458 1.746220 AGCGTAGTTCAGAGATTCGCT 59.254 47.619 0.00 0.00 45.76 4.93
407 459 2.196295 AGCGTAGTTCAGAGATTCGC 57.804 50.000 0.00 0.00 41.96 4.70
417 469 1.058404 GACACCGTGAAGCGTAGTTC 58.942 55.000 5.28 0.00 39.32 3.01
420 472 1.800315 CCGACACCGTGAAGCGTAG 60.800 63.158 5.28 0.00 39.32 3.51
538 647 3.069980 GCACAGACGGAGATCGCCT 62.070 63.158 14.01 0.53 43.89 5.52
539 648 2.583593 GCACAGACGGAGATCGCC 60.584 66.667 5.23 5.23 43.89 5.54
567 717 5.920273 CACCCTTTTGCTTGTGTACTAATTG 59.080 40.000 0.00 0.00 0.00 2.32
570 720 4.783055 TCACCCTTTTGCTTGTGTACTAA 58.217 39.130 0.00 0.00 0.00 2.24
571 721 4.425180 TCACCCTTTTGCTTGTGTACTA 57.575 40.909 0.00 0.00 0.00 1.82
572 722 3.290948 TCACCCTTTTGCTTGTGTACT 57.709 42.857 0.00 0.00 0.00 2.73
574 724 5.105146 ACAAATTCACCCTTTTGCTTGTGTA 60.105 36.000 0.00 0.00 36.51 2.90
614 788 0.667993 ATGGCAATGGTAAATCGCGG 59.332 50.000 6.13 0.00 0.00 6.46
669 843 2.668280 GCCACGTCGCTGTTCTTCC 61.668 63.158 0.00 0.00 0.00 3.46
719 917 2.754658 CCCCGTGACGGCTACTCT 60.755 66.667 20.39 0.00 46.86 3.24
794 1003 2.126346 GAAACACATGCGGCTGCC 60.126 61.111 16.57 9.11 41.78 4.85
796 1005 2.176546 CCGAAACACATGCGGCTG 59.823 61.111 0.00 0.00 38.46 4.85
802 1011 3.418913 TCGCCGCCGAAACACATG 61.419 61.111 0.00 0.00 41.17 3.21
803 1012 3.419759 GTCGCCGCCGAAACACAT 61.420 61.111 0.00 0.00 46.34 3.21
870 1088 2.892425 GGCGAGCCACTTGATCGG 60.892 66.667 9.58 0.00 36.96 4.18
931 1153 0.390209 GCGGCCCTTTTGTACTCGTA 60.390 55.000 0.00 0.00 0.00 3.43
1043 1283 4.711949 CCGGCCACTTGCTCTGCT 62.712 66.667 2.24 0.00 40.92 4.24
1066 1306 2.671070 CCCTGGTCCGCTTCATGT 59.329 61.111 0.00 0.00 0.00 3.21
1200 1447 3.056328 GGTCTTCTTGCCACCCGC 61.056 66.667 0.00 0.00 38.31 6.13
1334 1587 1.768077 CACATCCCCTCCTCCTCCC 60.768 68.421 0.00 0.00 0.00 4.30
1337 1590 2.367512 GCCACATCCCCTCCTCCT 60.368 66.667 0.00 0.00 0.00 3.69
1602 1885 3.760580 AGTTTCTCTCTCCAAGTGGTG 57.239 47.619 0.00 0.00 36.34 4.17
1603 1886 4.484912 AGTAGTTTCTCTCTCCAAGTGGT 58.515 43.478 0.00 0.00 36.34 4.16
1624 1926 9.521841 TGAGATGGTAACCTCATAGATTAGTAG 57.478 37.037 0.00 0.00 34.78 2.57
1626 1928 8.964533 ATGAGATGGTAACCTCATAGATTAGT 57.035 34.615 0.00 0.00 45.34 2.24
1635 1937 7.275183 CACAAATCTATGAGATGGTAACCTCA 58.725 38.462 0.00 0.00 42.78 3.86
1636 1938 6.203723 GCACAAATCTATGAGATGGTAACCTC 59.796 42.308 0.00 0.00 34.65 3.85
1638 1940 6.058183 AGCACAAATCTATGAGATGGTAACC 58.942 40.000 0.00 0.00 34.65 2.85
1639 1941 7.171678 GGTAGCACAAATCTATGAGATGGTAAC 59.828 40.741 0.00 0.00 34.65 2.50
1640 1942 7.147567 TGGTAGCACAAATCTATGAGATGGTAA 60.148 37.037 0.00 0.00 34.65 2.85
1641 1943 6.326323 TGGTAGCACAAATCTATGAGATGGTA 59.674 38.462 0.00 0.00 34.65 3.25
1642 1944 5.130975 TGGTAGCACAAATCTATGAGATGGT 59.869 40.000 0.00 0.00 34.65 3.55
1643 1945 5.614308 TGGTAGCACAAATCTATGAGATGG 58.386 41.667 0.00 0.00 34.65 3.51
1644 1946 5.178996 GCTGGTAGCACAAATCTATGAGATG 59.821 44.000 0.00 0.00 41.89 2.90
1645 1947 5.303971 GCTGGTAGCACAAATCTATGAGAT 58.696 41.667 0.00 0.00 41.89 2.75
1646 1948 4.697514 GCTGGTAGCACAAATCTATGAGA 58.302 43.478 0.00 0.00 41.89 3.27
1660 1962 1.086634 GCACTACTGCTGCTGGTAGC 61.087 60.000 22.87 13.26 43.95 3.58
1661 1963 3.056628 GCACTACTGCTGCTGGTAG 57.943 57.895 21.99 21.99 40.63 3.18
1670 1972 1.136057 GTACCGCAAAAGCACTACTGC 60.136 52.381 0.00 0.00 44.63 4.40
1671 1973 2.139917 TGTACCGCAAAAGCACTACTG 58.860 47.619 0.00 0.00 0.00 2.74
1697 1999 4.153411 CTCATAGATTAGTCCGTTCCCCT 58.847 47.826 0.00 0.00 0.00 4.79
1714 2016 9.750783 GGATTAGTAGTAGATGGTAACCTCATA 57.249 37.037 0.00 0.00 33.01 2.15
1716 2018 7.008941 GGGATTAGTAGTAGATGGTAACCTCA 58.991 42.308 0.00 0.00 33.01 3.86
1729 2031 5.448654 TCGCCTAAACTGGGATTAGTAGTA 58.551 41.667 0.00 0.00 0.00 1.82
1739 2041 0.741221 GCTCACTCGCCTAAACTGGG 60.741 60.000 0.00 0.00 0.00 4.45
1740 2042 1.078759 CGCTCACTCGCCTAAACTGG 61.079 60.000 0.00 0.00 0.00 4.00
1743 2045 0.992802 CTTCGCTCACTCGCCTAAAC 59.007 55.000 0.00 0.00 0.00 2.01
1822 2129 1.264288 CAAGAAGAGGGCACGTGAAAC 59.736 52.381 22.23 8.32 0.00 2.78
1886 2213 2.358615 ACGAGCCGCATTGCTTGA 60.359 55.556 12.64 0.00 44.16 3.02
1888 2215 3.490759 CGACGAGCCGCATTGCTT 61.491 61.111 7.12 0.00 42.95 3.91
1905 2232 2.270986 CCCCAGCAACAACTCTGGC 61.271 63.158 2.89 0.00 46.48 4.85
1908 2235 2.174854 AGTTAACCCCAGCAACAACTCT 59.825 45.455 0.88 0.00 0.00 3.24
1913 2240 1.353022 CCCTAGTTAACCCCAGCAACA 59.647 52.381 0.88 0.00 0.00 3.33
1917 2244 0.180642 GAGCCCTAGTTAACCCCAGC 59.819 60.000 0.88 1.09 0.00 4.85
1918 2245 0.837940 GGAGCCCTAGTTAACCCCAG 59.162 60.000 0.88 0.00 0.00 4.45
1922 2249 1.763545 CCTCAGGAGCCCTAGTTAACC 59.236 57.143 0.88 0.00 29.64 2.85
1923 2250 1.763545 CCCTCAGGAGCCCTAGTTAAC 59.236 57.143 0.00 0.00 33.47 2.01
1927 2254 1.002274 CACCCTCAGGAGCCCTAGT 59.998 63.158 0.00 0.00 36.73 2.57
1928 2255 1.764054 CCACCCTCAGGAGCCCTAG 60.764 68.421 0.00 0.00 36.73 3.02
1929 2256 2.368594 CCACCCTCAGGAGCCCTA 59.631 66.667 0.00 0.00 36.73 3.53
1932 2259 3.210012 TTTGCCACCCTCAGGAGCC 62.210 63.158 0.00 0.00 35.77 4.70
1940 2302 0.843984 ACAGTACAGTTTGCCACCCT 59.156 50.000 0.00 0.00 0.00 4.34
1954 2316 5.204409 ACGATGAAACCAACTGTACAGTA 57.796 39.130 28.13 11.70 41.58 2.74
1957 2319 4.876679 TGAAACGATGAAACCAACTGTACA 59.123 37.500 0.00 0.00 0.00 2.90
1960 2322 4.974368 TTGAAACGATGAAACCAACTGT 57.026 36.364 0.00 0.00 0.00 3.55
1970 2337 1.368641 CCGCTCCATTGAAACGATGA 58.631 50.000 0.00 0.00 0.00 2.92
1995 2362 2.828549 CGCTAGCCCGCCCAAATT 60.829 61.111 9.66 0.00 0.00 1.82
2007 2374 3.861263 GAAAACCCGGCGCGCTAG 61.861 66.667 32.29 24.01 0.00 3.42
2036 2429 2.845752 TTTCCGCGCCGTTCTAGCAT 62.846 55.000 0.00 0.00 0.00 3.79
2037 2430 3.576932 TTTCCGCGCCGTTCTAGCA 62.577 57.895 0.00 0.00 0.00 3.49
2040 2433 0.319727 TTCTTTTCCGCGCCGTTCTA 60.320 50.000 0.00 0.00 0.00 2.10
2054 2447 4.140536 CAGGAGTTGCTCTTCCTTTCTTT 58.859 43.478 1.41 0.00 0.00 2.52
2055 2448 3.392616 TCAGGAGTTGCTCTTCCTTTCTT 59.607 43.478 1.41 0.00 0.00 2.52
2056 2449 2.975489 TCAGGAGTTGCTCTTCCTTTCT 59.025 45.455 1.41 0.00 0.00 2.52
2066 2459 3.683802 CTCCAGAAATTCAGGAGTTGCT 58.316 45.455 21.82 0.00 42.98 3.91
2088 2481 1.000019 TCCAGTACTCCACCTCCGG 60.000 63.158 0.00 0.00 0.00 5.14
2089 2482 0.323542 ACTCCAGTACTCCACCTCCG 60.324 60.000 0.00 0.00 0.00 4.63
2095 2488 0.601558 GAACGCACTCCAGTACTCCA 59.398 55.000 0.00 0.00 0.00 3.86
2096 2489 0.108756 GGAACGCACTCCAGTACTCC 60.109 60.000 0.00 0.00 35.36 3.85
2097 2490 0.108756 GGGAACGCACTCCAGTACTC 60.109 60.000 0.00 0.00 37.20 2.59
2098 2491 0.830444 TGGGAACGCACTCCAGTACT 60.830 55.000 3.62 0.00 37.20 2.73
2099 2492 0.249398 ATGGGAACGCACTCCAGTAC 59.751 55.000 3.62 0.00 37.20 2.73
2100 2493 0.249120 CATGGGAACGCACTCCAGTA 59.751 55.000 3.62 0.00 37.20 2.74
2101 2494 1.003355 CATGGGAACGCACTCCAGT 60.003 57.895 3.62 0.00 37.20 4.00
2102 2495 1.003355 ACATGGGAACGCACTCCAG 60.003 57.895 0.00 0.00 37.20 3.86
2127 2520 1.206745 AAACGACGCGACTGTGACAG 61.207 55.000 15.93 11.70 37.52 3.51
2130 2523 0.933047 CAGAAACGACGCGACTGTGA 60.933 55.000 15.93 0.00 0.00 3.58
2133 2526 1.121967 GTTACAGAAACGACGCGACTG 59.878 52.381 15.93 13.81 34.71 3.51
2135 2528 1.381429 GAGTTACAGAAACGACGCGAC 59.619 52.381 15.93 5.54 43.29 5.19
2209 2603 6.638468 GGTTCATGTTAACAGAGAAAAGCAAG 59.362 38.462 21.09 0.58 0.00 4.01
2216 2610 6.591935 ACTTCTGGTTCATGTTAACAGAGAA 58.408 36.000 14.65 16.35 32.65 2.87
2221 2615 7.639113 AGAAAACTTCTGGTTCATGTTAACA 57.361 32.000 11.41 11.41 38.91 2.41
2225 2619 8.974060 TTAGTAGAAAACTTCTGGTTCATGTT 57.026 30.769 0.00 0.00 40.94 2.71
2226 2620 8.974060 TTTAGTAGAAAACTTCTGGTTCATGT 57.026 30.769 0.00 0.00 40.94 3.21
2271 2787 9.643693 GAAAGACATGAATCCATTGTACAAATT 57.356 29.630 13.23 8.02 0.00 1.82
2279 2796 6.859017 TGTGATGAAAGACATGAATCCATTG 58.141 36.000 0.00 0.00 39.56 2.82
2296 2813 5.067544 TGTTTTGCTCTTTGACATGTGATGA 59.932 36.000 1.15 0.00 0.00 2.92
2305 2822 4.237724 GGGCTAATGTTTTGCTCTTTGAC 58.762 43.478 0.00 0.00 0.00 3.18
2319 2836 2.503331 TGCATTATGTCCGGGCTAATG 58.497 47.619 23.05 23.05 36.42 1.90
2325 2842 4.448537 TTTCTTTTGCATTATGTCCGGG 57.551 40.909 0.00 0.00 0.00 5.73
2338 2855 7.170658 TCGCTTGGTTTATTGGATTTTCTTTTG 59.829 33.333 0.00 0.00 0.00 2.44
2339 2856 7.170828 GTCGCTTGGTTTATTGGATTTTCTTTT 59.829 33.333 0.00 0.00 0.00 2.27
2340 2857 6.645003 GTCGCTTGGTTTATTGGATTTTCTTT 59.355 34.615 0.00 0.00 0.00 2.52
2343 2860 5.465935 TGTCGCTTGGTTTATTGGATTTTC 58.534 37.500 0.00 0.00 0.00 2.29
2346 2863 4.949856 AGATGTCGCTTGGTTTATTGGATT 59.050 37.500 0.00 0.00 0.00 3.01
2348 2865 3.938963 GAGATGTCGCTTGGTTTATTGGA 59.061 43.478 0.00 0.00 0.00 3.53
2349 2866 3.941483 AGAGATGTCGCTTGGTTTATTGG 59.059 43.478 0.00 0.00 0.00 3.16
2363 2881 5.992217 ACACTTGTTGTAGGAAAGAGATGTC 59.008 40.000 0.00 0.00 36.32 3.06
2370 2888 7.329717 GTGAGATAGACACTTGTTGTAGGAAAG 59.670 40.741 0.00 0.00 39.17 2.62
2381 2899 5.906113 ACTGGTAGTGAGATAGACACTTG 57.094 43.478 0.00 0.00 44.69 3.16
2395 2913 7.341256 TCGTAGGATAGAAAAATCACTGGTAGT 59.659 37.037 0.00 0.00 0.00 2.73
2396 2914 7.713750 TCGTAGGATAGAAAAATCACTGGTAG 58.286 38.462 0.00 0.00 0.00 3.18
2397 2915 7.649533 TCGTAGGATAGAAAAATCACTGGTA 57.350 36.000 0.00 0.00 0.00 3.25
2398 2916 6.540438 TCGTAGGATAGAAAAATCACTGGT 57.460 37.500 0.00 0.00 0.00 4.00
2399 2917 6.258068 GGTTCGTAGGATAGAAAAATCACTGG 59.742 42.308 0.00 0.00 0.00 4.00
2400 2918 6.816640 TGGTTCGTAGGATAGAAAAATCACTG 59.183 38.462 0.00 0.00 0.00 3.66
2401 2919 6.942976 TGGTTCGTAGGATAGAAAAATCACT 58.057 36.000 0.00 0.00 0.00 3.41
2402 2920 7.605410 TTGGTTCGTAGGATAGAAAAATCAC 57.395 36.000 0.00 0.00 0.00 3.06
2403 2921 8.098286 TCTTTGGTTCGTAGGATAGAAAAATCA 58.902 33.333 0.00 0.00 0.00 2.57
2404 2922 8.488651 TCTTTGGTTCGTAGGATAGAAAAATC 57.511 34.615 0.00 0.00 0.00 2.17
2405 2923 8.893727 CATCTTTGGTTCGTAGGATAGAAAAAT 58.106 33.333 0.00 0.00 0.00 1.82
2406 2924 8.098286 TCATCTTTGGTTCGTAGGATAGAAAAA 58.902 33.333 0.00 0.00 0.00 1.94
2419 2967 6.144402 CCAAGTTTTTCATCATCTTTGGTTCG 59.856 38.462 0.00 0.00 0.00 3.95
2425 2973 7.015487 TCCATCACCAAGTTTTTCATCATCTTT 59.985 33.333 0.00 0.00 0.00 2.52
2448 2996 6.014012 CCCTACCCTAAAAATGTTTTCTCCA 58.986 40.000 0.00 0.00 0.00 3.86
2450 2998 6.250711 TCCCCTACCCTAAAAATGTTTTCTC 58.749 40.000 0.00 0.00 0.00 2.87
2451 2999 6.046286 TCTCCCCTACCCTAAAAATGTTTTCT 59.954 38.462 0.00 0.00 0.00 2.52
2452 3000 6.250711 TCTCCCCTACCCTAAAAATGTTTTC 58.749 40.000 0.00 0.00 0.00 2.29
2471 3019 1.186200 GCCCAAAAACCATCTCTCCC 58.814 55.000 0.00 0.00 0.00 4.30
2486 3034 4.802051 GCAAGAGCCGGATGCCCA 62.802 66.667 5.05 0.00 42.71 5.36
2541 3089 8.070034 TGGAATGAATCATGCTTGAGTTTTAT 57.930 30.769 8.40 0.00 34.73 1.40
2543 3091 6.349243 TGGAATGAATCATGCTTGAGTTTT 57.651 33.333 8.40 4.11 34.73 2.43
2549 3097 7.215719 AGATGTATGGAATGAATCATGCTTG 57.784 36.000 0.61 0.00 0.00 4.01
2595 3143 9.751542 TCGTTTTGATGTTTAATGGTAAATGTT 57.248 25.926 0.00 0.00 31.94 2.71
2596 3144 9.187455 GTCGTTTTGATGTTTAATGGTAAATGT 57.813 29.630 0.00 0.00 31.94 2.71
2597 3145 9.186323 TGTCGTTTTGATGTTTAATGGTAAATG 57.814 29.630 0.00 0.00 31.94 2.32
2598 3146 9.921637 ATGTCGTTTTGATGTTTAATGGTAAAT 57.078 25.926 0.00 0.00 31.94 1.40
2599 3147 9.751542 AATGTCGTTTTGATGTTTAATGGTAAA 57.248 25.926 0.00 0.00 0.00 2.01
2601 3149 9.828852 GTAATGTCGTTTTGATGTTTAATGGTA 57.171 29.630 0.00 0.00 0.00 3.25
2602 3150 8.353684 TGTAATGTCGTTTTGATGTTTAATGGT 58.646 29.630 0.00 0.00 0.00 3.55
2603 3151 8.735303 TGTAATGTCGTTTTGATGTTTAATGG 57.265 30.769 0.00 0.00 0.00 3.16
2645 3193 9.740239 GGTAGTTTGATGACGTATCATAGTAAA 57.260 33.333 8.03 1.30 46.01 2.01
2646 3194 8.905850 TGGTAGTTTGATGACGTATCATAGTAA 58.094 33.333 8.03 0.00 46.01 2.24
2647 3195 8.347771 GTGGTAGTTTGATGACGTATCATAGTA 58.652 37.037 8.03 7.97 46.01 1.82
2648 3196 7.068348 AGTGGTAGTTTGATGACGTATCATAGT 59.932 37.037 8.03 8.66 46.01 2.12
2649 3197 7.426410 AGTGGTAGTTTGATGACGTATCATAG 58.574 38.462 8.03 0.00 46.01 2.23
2650 3198 7.342769 AGTGGTAGTTTGATGACGTATCATA 57.657 36.000 8.03 2.76 46.01 2.15
2652 3200 5.393787 GGAGTGGTAGTTTGATGACGTATCA 60.394 44.000 0.00 0.00 43.92 2.15
2653 3201 5.041940 GGAGTGGTAGTTTGATGACGTATC 58.958 45.833 0.00 0.00 36.29 2.24
2654 3202 4.710375 AGGAGTGGTAGTTTGATGACGTAT 59.290 41.667 0.00 0.00 0.00 3.06
2655 3203 4.084287 AGGAGTGGTAGTTTGATGACGTA 58.916 43.478 0.00 0.00 0.00 3.57
2656 3204 2.897969 AGGAGTGGTAGTTTGATGACGT 59.102 45.455 0.00 0.00 0.00 4.34
2657 3205 3.056821 TGAGGAGTGGTAGTTTGATGACG 60.057 47.826 0.00 0.00 0.00 4.35
2658 3206 4.537135 TGAGGAGTGGTAGTTTGATGAC 57.463 45.455 0.00 0.00 0.00 3.06
2659 3207 5.762179 AATGAGGAGTGGTAGTTTGATGA 57.238 39.130 0.00 0.00 0.00 2.92
2660 3208 6.824305 AAAATGAGGAGTGGTAGTTTGATG 57.176 37.500 0.00 0.00 0.00 3.07
2681 3229 2.811431 CCGTGATGGTCTACTGCAAAAA 59.189 45.455 0.00 0.00 0.00 1.94
2682 3230 2.422597 CCGTGATGGTCTACTGCAAAA 58.577 47.619 0.00 0.00 0.00 2.44
2683 3231 1.338674 CCCGTGATGGTCTACTGCAAA 60.339 52.381 0.00 0.00 35.15 3.68
2684 3232 0.249120 CCCGTGATGGTCTACTGCAA 59.751 55.000 0.00 0.00 35.15 4.08
2685 3233 1.613317 CCCCGTGATGGTCTACTGCA 61.613 60.000 0.00 0.00 35.15 4.41
2686 3234 1.144057 CCCCGTGATGGTCTACTGC 59.856 63.158 0.00 0.00 35.15 4.40
2687 3235 1.137086 CTTCCCCGTGATGGTCTACTG 59.863 57.143 0.00 0.00 35.15 2.74
2688 3236 1.006758 TCTTCCCCGTGATGGTCTACT 59.993 52.381 0.00 0.00 35.15 2.57
2689 3237 1.136500 GTCTTCCCCGTGATGGTCTAC 59.864 57.143 0.00 0.00 35.15 2.59
2690 3238 1.481871 GTCTTCCCCGTGATGGTCTA 58.518 55.000 0.00 0.00 35.15 2.59
2691 3239 1.605058 CGTCTTCCCCGTGATGGTCT 61.605 60.000 0.00 0.00 35.15 3.85
2692 3240 1.153628 CGTCTTCCCCGTGATGGTC 60.154 63.158 0.00 0.00 35.15 4.02
2693 3241 1.885163 GACGTCTTCCCCGTGATGGT 61.885 60.000 8.70 0.00 38.92 3.55
2694 3242 1.153628 GACGTCTTCCCCGTGATGG 60.154 63.158 8.70 0.00 38.92 3.51
2695 3243 0.246635 AAGACGTCTTCCCCGTGATG 59.753 55.000 24.93 0.00 38.92 3.07
2696 3244 0.974383 AAAGACGTCTTCCCCGTGAT 59.026 50.000 29.82 10.05 38.92 3.06
2697 3245 0.032952 CAAAGACGTCTTCCCCGTGA 59.967 55.000 29.82 0.00 38.92 4.35
2698 3246 1.566018 GCAAAGACGTCTTCCCCGTG 61.566 60.000 29.82 23.39 38.92 4.94
2699 3247 1.301479 GCAAAGACGTCTTCCCCGT 60.301 57.895 29.82 12.32 42.06 5.28
2700 3248 2.380410 CGCAAAGACGTCTTCCCCG 61.380 63.158 29.82 25.17 34.61 5.73
2701 3249 1.301479 ACGCAAAGACGTCTTCCCC 60.301 57.895 29.82 18.94 44.43 4.81
2702 3250 1.860078 CACGCAAAGACGTCTTCCC 59.140 57.895 29.82 21.19 46.34 3.97
2703 3251 1.204312 GCACGCAAAGACGTCTTCC 59.796 57.895 29.82 21.52 46.34 3.46
2704 3252 1.154836 CGCACGCAAAGACGTCTTC 60.155 57.895 29.82 17.70 46.34 2.87
2705 3253 2.928361 CGCACGCAAAGACGTCTT 59.072 55.556 24.93 24.93 46.34 3.01
2706 3254 3.702555 GCGCACGCAAAGACGTCT 61.703 61.111 13.58 13.58 46.34 4.18
2727 3275 3.930848 ACGAAGACGAATTTGATGGGTAC 59.069 43.478 0.00 0.00 42.66 3.34
2728 3276 3.930229 CACGAAGACGAATTTGATGGGTA 59.070 43.478 0.00 0.00 42.66 3.69
2729 3277 2.742053 CACGAAGACGAATTTGATGGGT 59.258 45.455 0.00 0.00 42.66 4.51
2730 3278 3.000041 TCACGAAGACGAATTTGATGGG 59.000 45.455 0.00 0.00 42.66 4.00
2731 3279 4.329801 TGATCACGAAGACGAATTTGATGG 59.670 41.667 0.00 0.00 42.66 3.51
2732 3280 5.251081 GTGATCACGAAGACGAATTTGATG 58.749 41.667 10.69 0.00 42.66 3.07
2733 3281 4.330074 GGTGATCACGAAGACGAATTTGAT 59.670 41.667 19.33 0.00 42.66 2.57
2734 3282 3.678072 GGTGATCACGAAGACGAATTTGA 59.322 43.478 19.33 0.00 42.66 2.69
2735 3283 3.181520 GGGTGATCACGAAGACGAATTTG 60.182 47.826 19.33 0.00 42.66 2.32
2736 3284 3.000727 GGGTGATCACGAAGACGAATTT 58.999 45.455 19.33 0.00 42.66 1.82
2737 3285 2.618053 GGGTGATCACGAAGACGAATT 58.382 47.619 19.33 0.00 42.66 2.17
2738 3286 1.134788 GGGGTGATCACGAAGACGAAT 60.135 52.381 19.33 0.00 42.66 3.34
2739 3287 0.245539 GGGGTGATCACGAAGACGAA 59.754 55.000 19.33 0.00 42.66 3.85
2740 3288 0.611062 AGGGGTGATCACGAAGACGA 60.611 55.000 19.33 0.00 42.66 4.20
2741 3289 0.179134 GAGGGGTGATCACGAAGACG 60.179 60.000 19.33 0.00 45.75 4.18
2742 3290 0.175989 GGAGGGGTGATCACGAAGAC 59.824 60.000 19.33 5.19 0.00 3.01
2743 3291 1.320344 CGGAGGGGTGATCACGAAGA 61.320 60.000 19.33 0.00 0.00 2.87
2744 3292 1.141881 CGGAGGGGTGATCACGAAG 59.858 63.158 19.33 4.19 0.00 3.79
2745 3293 3.014085 GCGGAGGGGTGATCACGAA 62.014 63.158 19.33 0.00 0.00 3.85
2746 3294 3.458163 GCGGAGGGGTGATCACGA 61.458 66.667 19.33 0.00 0.00 4.35
2747 3295 4.530857 GGCGGAGGGGTGATCACG 62.531 72.222 19.33 8.20 0.00 4.35
2748 3296 4.530857 CGGCGGAGGGGTGATCAC 62.531 72.222 17.91 17.91 0.00 3.06
2751 3299 4.880426 ATCCGGCGGAGGGGTGAT 62.880 66.667 33.82 12.81 34.05 3.06
2756 3304 3.974757 GTACGATCCGGCGGAGGG 61.975 72.222 33.82 27.63 34.05 4.30
2757 3305 4.323843 CGTACGATCCGGCGGAGG 62.324 72.222 33.82 27.98 34.05 4.30
2758 3306 2.712743 CTTCGTACGATCCGGCGGAG 62.713 65.000 33.82 23.18 34.05 4.63
2759 3307 2.823593 TTCGTACGATCCGGCGGA 60.824 61.111 33.10 33.10 35.55 5.54
2760 3308 2.353145 CTTCGTACGATCCGGCGG 60.353 66.667 22.51 22.51 35.12 6.13
2761 3309 2.353145 CCTTCGTACGATCCGGCG 60.353 66.667 20.27 0.00 37.29 6.46
2762 3310 2.657620 GCCTTCGTACGATCCGGC 60.658 66.667 26.89 26.89 0.00 6.13
2763 3311 1.168407 TAGGCCTTCGTACGATCCGG 61.168 60.000 20.27 19.39 0.00 5.14
2764 3312 0.664761 TTAGGCCTTCGTACGATCCG 59.335 55.000 20.27 10.35 0.00 4.18
2765 3313 1.406539 TGTTAGGCCTTCGTACGATCC 59.593 52.381 20.27 19.10 0.00 3.36
2766 3314 2.857592 TGTTAGGCCTTCGTACGATC 57.142 50.000 20.27 11.09 0.00 3.69
2767 3315 2.957006 AGATGTTAGGCCTTCGTACGAT 59.043 45.455 20.27 6.15 0.00 3.73
2768 3316 2.372264 AGATGTTAGGCCTTCGTACGA 58.628 47.619 12.58 15.28 0.00 3.43
2769 3317 2.865343 AGATGTTAGGCCTTCGTACG 57.135 50.000 12.58 9.53 0.00 3.67
2770 3318 4.507021 GCTTTAGATGTTAGGCCTTCGTAC 59.493 45.833 12.58 5.25 0.00 3.67
2771 3319 4.404715 AGCTTTAGATGTTAGGCCTTCGTA 59.595 41.667 12.58 0.00 0.00 3.43
2772 3320 3.197983 AGCTTTAGATGTTAGGCCTTCGT 59.802 43.478 12.58 6.28 0.00 3.85
2773 3321 3.557595 CAGCTTTAGATGTTAGGCCTTCG 59.442 47.826 12.58 0.00 0.00 3.79
2774 3322 4.770795 TCAGCTTTAGATGTTAGGCCTTC 58.229 43.478 12.58 1.11 32.47 3.46
2775 3323 4.844349 TCAGCTTTAGATGTTAGGCCTT 57.156 40.909 12.58 0.00 32.47 4.35
2776 3324 4.384647 CCTTCAGCTTTAGATGTTAGGCCT 60.385 45.833 11.78 11.78 31.70 5.19
2777 3325 3.879892 CCTTCAGCTTTAGATGTTAGGCC 59.120 47.826 0.00 0.00 31.70 5.19
2778 3326 3.313803 GCCTTCAGCTTTAGATGTTAGGC 59.686 47.826 19.69 19.69 45.12 3.93
2779 3327 3.879892 GGCCTTCAGCTTTAGATGTTAGG 59.120 47.826 0.00 11.73 43.05 2.69
2780 3328 3.879892 GGGCCTTCAGCTTTAGATGTTAG 59.120 47.826 0.84 0.00 43.05 2.34
2781 3329 3.371595 GGGGCCTTCAGCTTTAGATGTTA 60.372 47.826 0.84 0.00 43.05 2.41
2782 3330 2.621668 GGGGCCTTCAGCTTTAGATGTT 60.622 50.000 0.84 0.00 43.05 2.71
2783 3331 1.064389 GGGGCCTTCAGCTTTAGATGT 60.064 52.381 0.84 0.00 43.05 3.06
2784 3332 1.064463 TGGGGCCTTCAGCTTTAGATG 60.064 52.381 0.84 0.00 43.05 2.90
2785 3333 1.298953 TGGGGCCTTCAGCTTTAGAT 58.701 50.000 0.84 0.00 43.05 1.98
2786 3334 1.072266 TTGGGGCCTTCAGCTTTAGA 58.928 50.000 0.84 0.00 43.05 2.10
2787 3335 1.177401 GTTGGGGCCTTCAGCTTTAG 58.823 55.000 0.84 0.00 43.05 1.85
2788 3336 0.251608 GGTTGGGGCCTTCAGCTTTA 60.252 55.000 0.84 0.00 43.05 1.85
2789 3337 1.533994 GGTTGGGGCCTTCAGCTTT 60.534 57.895 0.84 0.00 43.05 3.51
2790 3338 2.118294 GGTTGGGGCCTTCAGCTT 59.882 61.111 0.84 0.00 43.05 3.74
2791 3339 2.720144 CTTGGTTGGGGCCTTCAGCT 62.720 60.000 0.84 0.00 43.05 4.24
2792 3340 2.203625 TTGGTTGGGGCCTTCAGC 60.204 61.111 0.84 3.71 42.60 4.26
2793 3341 2.278330 GCTTGGTTGGGGCCTTCAG 61.278 63.158 0.84 0.00 0.00 3.02
2794 3342 2.203625 GCTTGGTTGGGGCCTTCA 60.204 61.111 0.84 0.00 0.00 3.02
2795 3343 2.997315 GGCTTGGTTGGGGCCTTC 60.997 66.667 0.84 0.00 42.31 3.46
2796 3344 3.843800 TGGCTTGGTTGGGGCCTT 61.844 61.111 0.84 0.00 45.45 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.