Multiple sequence alignment - TraesCS3D01G038100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G038100 chr3D 100.000 2779 0 0 1 2779 13990220 13987442 0.000000e+00 5132.0
1 TraesCS3D01G038100 chr3D 96.364 660 18 4 261 914 426433424 426434083 0.000000e+00 1081.0
2 TraesCS3D01G038100 chr3D 81.056 644 59 37 1051 1644 13964800 13965430 3.260000e-124 455.0
3 TraesCS3D01G038100 chr3A 88.333 1020 70 24 918 1912 22786728 22787723 0.000000e+00 1179.0
4 TraesCS3D01G038100 chr3A 81.847 628 56 32 1034 1611 22831599 22830980 2.500000e-130 475.0
5 TraesCS3D01G038100 chr3B 89.451 910 46 18 1063 1934 20430799 20429902 0.000000e+00 1103.0
6 TraesCS3D01G038100 chr3B 88.308 402 26 8 1046 1432 20320059 20320454 1.950000e-126 462.0
7 TraesCS3D01G038100 chr5D 95.777 663 21 5 261 917 424284017 424283356 0.000000e+00 1062.0
8 TraesCS3D01G038100 chr5D 99.603 252 1 0 1 252 437910746 437910495 7.010000e-126 460.0
9 TraesCS3D01G038100 chr5D 99.206 252 2 0 1 252 81158678 81158427 3.260000e-124 455.0
10 TraesCS3D01G038100 chr6D 95.764 661 21 4 261 914 452521943 452522603 0.000000e+00 1059.0
11 TraesCS3D01G038100 chr6D 99.206 252 2 0 1 252 85978104 85977853 3.260000e-124 455.0
12 TraesCS3D01G038100 chr6D 98.810 252 3 0 1 252 452521640 452521891 1.520000e-122 449.0
13 TraesCS3D01G038100 chr1D 95.732 656 23 4 261 914 454849354 454850006 0.000000e+00 1051.0
14 TraesCS3D01G038100 chr1D 95.420 655 26 3 261 913 31064840 31064188 0.000000e+00 1040.0
15 TraesCS3D01G038100 chr1D 99.206 252 2 0 1 252 261073596 261073345 3.260000e-124 455.0
16 TraesCS3D01G038100 chr1D 99.206 252 2 0 1 252 454849051 454849302 3.260000e-124 455.0
17 TraesCS3D01G038100 chr2A 95.324 663 26 3 261 918 733655669 733656331 0.000000e+00 1048.0
18 TraesCS3D01G038100 chr2A 99.206 252 2 0 1 252 713305353 713305604 3.260000e-124 455.0
19 TraesCS3D01G038100 chr2D 95.181 664 25 5 261 917 44617369 44616706 0.000000e+00 1042.0
20 TraesCS3D01G038100 chr2D 94.992 659 29 3 261 917 547519816 547519160 0.000000e+00 1031.0
21 TraesCS3D01G038100 chr4D 95.166 662 26 4 261 917 7152685 7152025 0.000000e+00 1040.0
22 TraesCS3D01G038100 chr4D 99.206 252 2 0 1 252 7152988 7152737 3.260000e-124 455.0
23 TraesCS3D01G038100 chr4D 98.810 252 3 0 1 252 461260198 461260449 1.520000e-122 449.0
24 TraesCS3D01G038100 chr7B 100.000 28 0 0 2526 2553 592428154 592428127 5.000000e-03 52.8
25 TraesCS3D01G038100 chr2B 100.000 28 0 0 2526 2553 79653403 79653376 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G038100 chr3D 13987442 13990220 2778 True 5132.0 5132 100.000 1 2779 1 chr3D.!!$R1 2778
1 TraesCS3D01G038100 chr3D 426433424 426434083 659 False 1081.0 1081 96.364 261 914 1 chr3D.!!$F2 653
2 TraesCS3D01G038100 chr3D 13964800 13965430 630 False 455.0 455 81.056 1051 1644 1 chr3D.!!$F1 593
3 TraesCS3D01G038100 chr3A 22786728 22787723 995 False 1179.0 1179 88.333 918 1912 1 chr3A.!!$F1 994
4 TraesCS3D01G038100 chr3A 22830980 22831599 619 True 475.0 475 81.847 1034 1611 1 chr3A.!!$R1 577
5 TraesCS3D01G038100 chr3B 20429902 20430799 897 True 1103.0 1103 89.451 1063 1934 1 chr3B.!!$R1 871
6 TraesCS3D01G038100 chr5D 424283356 424284017 661 True 1062.0 1062 95.777 261 917 1 chr5D.!!$R2 656
7 TraesCS3D01G038100 chr6D 452521640 452522603 963 False 754.0 1059 97.287 1 914 2 chr6D.!!$F1 913
8 TraesCS3D01G038100 chr1D 31064188 31064840 652 True 1040.0 1040 95.420 261 913 1 chr1D.!!$R1 652
9 TraesCS3D01G038100 chr1D 454849051 454850006 955 False 753.0 1051 97.469 1 914 2 chr1D.!!$F1 913
10 TraesCS3D01G038100 chr2A 733655669 733656331 662 False 1048.0 1048 95.324 261 918 1 chr2A.!!$F2 657
11 TraesCS3D01G038100 chr2D 44616706 44617369 663 True 1042.0 1042 95.181 261 917 1 chr2D.!!$R1 656
12 TraesCS3D01G038100 chr2D 547519160 547519816 656 True 1031.0 1031 94.992 261 917 1 chr2D.!!$R2 656
13 TraesCS3D01G038100 chr4D 7152025 7152988 963 True 747.5 1040 97.186 1 917 2 chr4D.!!$R1 916

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
252 253 0.106335 TAAACAACCGCAACCGAGGA 59.894 50.0 0.0 0.0 35.72 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2113 2290 0.094046 CGTTTTTAGGCTACGCGGTG 59.906 55.0 12.47 3.22 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
252 253 0.106335 TAAACAACCGCAACCGAGGA 59.894 50.000 0.00 0.00 35.72 3.71
253 254 0.748729 AAACAACCGCAACCGAGGAA 60.749 50.000 0.00 0.00 35.72 3.36
254 255 1.441732 AACAACCGCAACCGAGGAAC 61.442 55.000 0.00 0.00 35.72 3.62
256 257 1.597027 AACCGCAACCGAGGAACTG 60.597 57.895 0.00 0.00 41.55 3.16
259 260 2.946762 GCAACCGAGGAACTGCAC 59.053 61.111 0.00 0.00 41.55 4.57
268 312 1.996191 GAGGAACTGCACGATCACTTC 59.004 52.381 0.00 0.00 41.55 3.01
310 354 5.594725 ACGATCTCAAAACCTAGCTAGATCA 59.405 40.000 22.70 0.00 39.40 2.92
573 619 1.380246 ACGCGGGATGTGGTACCTA 60.380 57.895 14.36 2.39 0.00 3.08
597 643 1.413767 CGCTCGTTGGAGATTCACGG 61.414 60.000 0.00 0.00 43.27 4.94
689 735 1.153597 TATGGAGCTGCGTCAATGCG 61.154 55.000 2.00 0.00 37.81 4.73
706 752 1.589993 CGCGCGAGATTGATGGAGT 60.590 57.895 28.94 0.00 0.00 3.85
713 763 2.736719 CGAGATTGATGGAGTTGCTCGT 60.737 50.000 0.00 0.00 38.97 4.18
798 857 3.266510 ACTGTACGTATACGGTCTGGA 57.733 47.619 27.62 5.97 46.14 3.86
819 878 2.696526 TATACAGGGCTAGACAGGGG 57.303 55.000 0.00 0.00 0.00 4.79
905 965 1.898190 TTAGGCTAGGGGGAGCACCT 61.898 60.000 0.00 0.00 44.76 4.00
945 1006 1.892209 TCGTGGCTTCTTTTCTTCCC 58.108 50.000 0.00 0.00 0.00 3.97
946 1007 1.142060 TCGTGGCTTCTTTTCTTCCCA 59.858 47.619 0.00 0.00 0.00 4.37
947 1008 1.537202 CGTGGCTTCTTTTCTTCCCAG 59.463 52.381 0.00 0.00 0.00 4.45
965 1026 2.505118 GCACTCGCTCGTCCAGAC 60.505 66.667 0.00 0.00 34.30 3.51
969 1030 2.033602 TCGCTCGTCCAGACTCCA 59.966 61.111 0.00 0.00 0.00 3.86
981 1042 4.451544 ACTCCAGAGTCCAGAGGC 57.548 61.111 10.81 0.00 36.92 4.70
1003 1064 4.954118 TCACCCACCCCTCACGCT 62.954 66.667 0.00 0.00 0.00 5.07
1027 1088 0.185901 ACCAAGGAGAGGCAAGCAAA 59.814 50.000 0.00 0.00 0.00 3.68
1028 1089 1.331214 CCAAGGAGAGGCAAGCAAAA 58.669 50.000 0.00 0.00 0.00 2.44
1044 1105 1.944024 CAAAACTGTAACGACTGCCCA 59.056 47.619 0.00 0.00 0.00 5.36
1608 1762 5.941647 TCTGTTAATTTACCTTACCAGTGGC 59.058 40.000 9.78 0.00 0.00 5.01
1654 1815 8.218338 ACATTACTATACTGCGTAGTACTGTT 57.782 34.615 15.91 2.69 41.64 3.16
1680 1856 0.669932 TTGGCCGCGTACGTTTGTAT 60.670 50.000 17.90 0.00 37.70 2.29
1758 1934 4.440802 CCATTGAGACTGCTGTACTCTACC 60.441 50.000 17.43 0.00 0.00 3.18
1759 1935 3.434940 TGAGACTGCTGTACTCTACCA 57.565 47.619 17.43 3.29 0.00 3.25
1760 1936 3.763057 TGAGACTGCTGTACTCTACCAA 58.237 45.455 17.43 2.59 0.00 3.67
1761 1937 4.344978 TGAGACTGCTGTACTCTACCAAT 58.655 43.478 17.43 0.00 0.00 3.16
1778 1954 9.941664 CTCTACCAATTAACATTGCTTCATTAG 57.058 33.333 0.00 0.00 38.88 1.73
1807 1983 2.882137 TGCTTAACTTCCAAGGTTTCCG 59.118 45.455 0.00 0.00 0.00 4.30
1845 2021 2.672307 GCTCTGCTGCTGCCAAGT 60.672 61.111 13.47 0.00 38.71 3.16
1888 2065 6.794493 TGAGGACATAGGATTTTGGAGGATAT 59.206 38.462 0.00 0.00 0.00 1.63
1940 2117 8.727100 AAAATGTAGAGAAATTTTCTTCCCCT 57.273 30.769 12.73 7.93 40.87 4.79
1941 2118 7.946381 AATGTAGAGAAATTTTCTTCCCCTC 57.054 36.000 12.73 0.16 40.87 4.30
1942 2119 6.448369 TGTAGAGAAATTTTCTTCCCCTCA 57.552 37.500 12.73 5.18 40.87 3.86
1943 2120 6.848069 TGTAGAGAAATTTTCTTCCCCTCAA 58.152 36.000 12.73 0.00 40.87 3.02
1944 2121 7.294584 TGTAGAGAAATTTTCTTCCCCTCAAA 58.705 34.615 12.73 0.00 40.87 2.69
1971 2148 9.480053 AAAAATGTAGAGAATTTTCCATGTGTG 57.520 29.630 0.00 0.00 36.46 3.82
1972 2149 5.627499 TGTAGAGAATTTTCCATGTGTGC 57.373 39.130 0.00 0.00 0.00 4.57
1973 2150 5.069318 TGTAGAGAATTTTCCATGTGTGCA 58.931 37.500 0.00 0.00 0.00 4.57
1974 2151 5.534278 TGTAGAGAATTTTCCATGTGTGCAA 59.466 36.000 0.00 0.00 0.00 4.08
1975 2152 5.733620 AGAGAATTTTCCATGTGTGCAAT 57.266 34.783 0.00 0.00 0.00 3.56
1976 2153 6.105397 AGAGAATTTTCCATGTGTGCAATT 57.895 33.333 0.00 0.00 0.00 2.32
1977 2154 6.527423 AGAGAATTTTCCATGTGTGCAATTT 58.473 32.000 0.00 0.00 0.00 1.82
1978 2155 6.425721 AGAGAATTTTCCATGTGTGCAATTTG 59.574 34.615 0.00 0.00 0.00 2.32
1979 2156 5.470777 AGAATTTTCCATGTGTGCAATTTGG 59.529 36.000 0.00 0.00 0.00 3.28
1980 2157 4.412796 TTTTCCATGTGTGCAATTTGGA 57.587 36.364 5.15 5.15 31.51 3.53
1981 2158 4.412796 TTTCCATGTGTGCAATTTGGAA 57.587 36.364 14.35 14.35 38.68 3.53
1982 2159 3.383620 TCCATGTGTGCAATTTGGAAC 57.616 42.857 6.48 0.00 30.72 3.62
1983 2160 2.697229 TCCATGTGTGCAATTTGGAACA 59.303 40.909 6.48 3.92 30.72 3.18
2001 2178 7.391148 TGGAACAAAGAAATTGCTATCCTAC 57.609 36.000 8.27 0.00 43.13 3.18
2002 2179 6.945435 TGGAACAAAGAAATTGCTATCCTACA 59.055 34.615 8.27 0.00 43.13 2.74
2003 2180 7.615365 TGGAACAAAGAAATTGCTATCCTACAT 59.385 33.333 8.27 0.00 43.13 2.29
2004 2181 8.470002 GGAACAAAGAAATTGCTATCCTACATT 58.530 33.333 0.00 0.00 43.13 2.71
2022 2199 9.753674 TCCTACATTATTTTGAATTTCCTCTGT 57.246 29.630 0.00 0.00 0.00 3.41
2029 2206 9.651913 TTATTTTGAATTTCCTCTGTAATTGGC 57.348 29.630 0.00 0.00 0.00 4.52
2030 2207 6.916360 TTTGAATTTCCTCTGTAATTGGCT 57.084 33.333 0.00 0.00 0.00 4.75
2031 2208 8.415950 TTTTGAATTTCCTCTGTAATTGGCTA 57.584 30.769 0.00 0.00 0.00 3.93
2032 2209 8.593945 TTTGAATTTCCTCTGTAATTGGCTAT 57.406 30.769 0.00 0.00 0.00 2.97
2033 2210 8.593945 TTGAATTTCCTCTGTAATTGGCTATT 57.406 30.769 0.00 0.00 0.00 1.73
2034 2211 8.225603 TGAATTTCCTCTGTAATTGGCTATTC 57.774 34.615 0.00 0.00 0.00 1.75
2035 2212 7.285401 TGAATTTCCTCTGTAATTGGCTATTCC 59.715 37.037 0.00 0.00 0.00 3.01
2036 2213 5.708736 TTCCTCTGTAATTGGCTATTCCA 57.291 39.130 0.00 0.00 44.85 3.53
2037 2214 5.912149 TCCTCTGTAATTGGCTATTCCAT 57.088 39.130 0.00 0.00 46.04 3.41
2038 2215 7.387265 TTCCTCTGTAATTGGCTATTCCATA 57.613 36.000 0.00 0.00 46.04 2.74
2039 2216 7.009179 TCCTCTGTAATTGGCTATTCCATAG 57.991 40.000 0.00 0.00 46.04 2.23
2040 2217 6.787458 TCCTCTGTAATTGGCTATTCCATAGA 59.213 38.462 0.00 0.00 46.04 1.98
2041 2218 7.292356 TCCTCTGTAATTGGCTATTCCATAGAA 59.708 37.037 0.00 0.00 46.04 2.10
2042 2219 8.105829 CCTCTGTAATTGGCTATTCCATAGAAT 58.894 37.037 0.00 0.00 46.04 2.40
2043 2220 9.512588 CTCTGTAATTGGCTATTCCATAGAATT 57.487 33.333 0.00 0.00 46.04 2.17
2044 2221 9.866655 TCTGTAATTGGCTATTCCATAGAATTT 57.133 29.630 0.00 0.00 46.04 1.82
2047 2224 9.696917 GTAATTGGCTATTCCATAGAATTTTGG 57.303 33.333 0.00 0.00 46.04 3.28
2048 2225 8.551682 AATTGGCTATTCCATAGAATTTTGGA 57.448 30.769 0.00 2.54 46.04 3.53
2049 2226 7.587037 TTGGCTATTCCATAGAATTTTGGAG 57.413 36.000 0.00 0.00 46.04 3.86
2050 2227 5.536161 TGGCTATTCCATAGAATTTTGGAGC 59.464 40.000 0.00 0.00 42.73 4.70
2051 2228 5.536161 GGCTATTCCATAGAATTTTGGAGCA 59.464 40.000 7.55 1.55 42.73 4.26
2052 2229 6.040842 GGCTATTCCATAGAATTTTGGAGCAA 59.959 38.462 7.55 0.00 42.73 3.91
2053 2230 7.417797 GGCTATTCCATAGAATTTTGGAGCAAA 60.418 37.037 7.55 0.00 42.73 3.68
2054 2231 7.436376 GCTATTCCATAGAATTTTGGAGCAAAC 59.564 37.037 0.00 0.00 42.73 2.93
2055 2232 5.659440 TCCATAGAATTTTGGAGCAAACC 57.341 39.130 2.54 0.00 37.10 3.27
2056 2233 5.083122 TCCATAGAATTTTGGAGCAAACCA 58.917 37.500 2.54 0.00 37.10 3.67
2057 2234 5.541868 TCCATAGAATTTTGGAGCAAACCAA 59.458 36.000 6.05 6.05 46.44 3.67
2065 2242 4.599047 TTGGAGCAAACCAAACATAAGG 57.401 40.909 7.41 0.00 45.36 2.69
2066 2243 3.571590 TGGAGCAAACCAAACATAAGGT 58.428 40.909 0.00 0.00 40.61 3.50
2067 2244 3.572255 TGGAGCAAACCAAACATAAGGTC 59.428 43.478 0.00 0.00 37.07 3.85
2068 2245 3.056821 GGAGCAAACCAAACATAAGGTCC 60.057 47.826 0.00 0.00 37.07 4.46
2069 2246 3.826729 GAGCAAACCAAACATAAGGTCCT 59.173 43.478 0.00 0.00 37.07 3.85
2070 2247 4.993028 AGCAAACCAAACATAAGGTCCTA 58.007 39.130 0.00 0.00 37.07 2.94
2071 2248 4.765339 AGCAAACCAAACATAAGGTCCTAC 59.235 41.667 0.00 0.00 37.07 3.18
2072 2249 4.765339 GCAAACCAAACATAAGGTCCTACT 59.235 41.667 0.00 0.00 37.07 2.57
2073 2250 5.941647 GCAAACCAAACATAAGGTCCTACTA 59.058 40.000 0.00 0.00 37.07 1.82
2074 2251 6.431852 GCAAACCAAACATAAGGTCCTACTAA 59.568 38.462 0.00 0.00 37.07 2.24
2075 2252 7.574404 GCAAACCAAACATAAGGTCCTACTAAC 60.574 40.741 0.00 0.00 37.07 2.34
2076 2253 6.691255 ACCAAACATAAGGTCCTACTAACA 57.309 37.500 0.00 0.00 30.79 2.41
2077 2254 6.708285 ACCAAACATAAGGTCCTACTAACAG 58.292 40.000 0.00 0.00 30.79 3.16
2078 2255 6.113411 CCAAACATAAGGTCCTACTAACAGG 58.887 44.000 0.00 0.00 37.00 4.00
2079 2256 6.070424 CCAAACATAAGGTCCTACTAACAGGA 60.070 42.308 0.00 0.00 42.62 3.86
2080 2257 6.793505 AACATAAGGTCCTACTAACAGGAG 57.206 41.667 0.00 0.00 45.49 3.69
2081 2258 6.088541 ACATAAGGTCCTACTAACAGGAGA 57.911 41.667 0.00 0.00 45.49 3.71
2082 2259 6.500336 ACATAAGGTCCTACTAACAGGAGAA 58.500 40.000 0.00 0.00 45.49 2.87
2083 2260 6.380560 ACATAAGGTCCTACTAACAGGAGAAC 59.619 42.308 0.00 0.00 45.49 3.01
2084 2261 4.399483 AGGTCCTACTAACAGGAGAACA 57.601 45.455 0.00 0.00 45.49 3.18
2085 2262 4.748701 AGGTCCTACTAACAGGAGAACAA 58.251 43.478 0.00 0.00 45.49 2.83
2086 2263 5.342866 AGGTCCTACTAACAGGAGAACAAT 58.657 41.667 0.00 0.00 45.49 2.71
2087 2264 6.500336 AGGTCCTACTAACAGGAGAACAATA 58.500 40.000 0.00 0.00 45.49 1.90
2088 2265 7.133483 AGGTCCTACTAACAGGAGAACAATAT 58.867 38.462 0.00 0.00 45.49 1.28
2089 2266 8.287350 AGGTCCTACTAACAGGAGAACAATATA 58.713 37.037 0.00 0.00 45.49 0.86
2090 2267 9.091220 GGTCCTACTAACAGGAGAACAATATAT 57.909 37.037 0.00 0.00 45.49 0.86
2115 2292 9.691362 ATATGGACAAAAACACAAGATTAACAC 57.309 29.630 0.00 0.00 0.00 3.32
2116 2293 6.334202 TGGACAAAAACACAAGATTAACACC 58.666 36.000 0.00 0.00 0.00 4.16
2117 2294 5.457473 GGACAAAAACACAAGATTAACACCG 59.543 40.000 0.00 0.00 0.00 4.94
2118 2295 4.801516 ACAAAAACACAAGATTAACACCGC 59.198 37.500 0.00 0.00 0.00 5.68
2119 2296 2.961522 AACACAAGATTAACACCGCG 57.038 45.000 0.00 0.00 0.00 6.46
2120 2297 1.873698 ACACAAGATTAACACCGCGT 58.126 45.000 4.92 0.00 0.00 6.01
2121 2298 3.029320 ACACAAGATTAACACCGCGTA 57.971 42.857 4.92 0.00 0.00 4.42
2122 2299 2.991190 ACACAAGATTAACACCGCGTAG 59.009 45.455 4.92 0.00 0.00 3.51
2139 2316 4.102035 CGTAGCCTAAAAACGTACCTCT 57.898 45.455 0.00 0.00 32.16 3.69
2140 2317 4.101235 CGTAGCCTAAAAACGTACCTCTC 58.899 47.826 0.00 0.00 32.16 3.20
2141 2318 4.142513 CGTAGCCTAAAAACGTACCTCTCT 60.143 45.833 0.00 0.00 32.16 3.10
2142 2319 5.065218 CGTAGCCTAAAAACGTACCTCTCTA 59.935 44.000 0.00 0.00 32.16 2.43
2143 2320 5.990120 AGCCTAAAAACGTACCTCTCTAA 57.010 39.130 0.00 0.00 0.00 2.10
2144 2321 6.541934 AGCCTAAAAACGTACCTCTCTAAT 57.458 37.500 0.00 0.00 0.00 1.73
2145 2322 6.571605 AGCCTAAAAACGTACCTCTCTAATC 58.428 40.000 0.00 0.00 0.00 1.75
2146 2323 5.458126 GCCTAAAAACGTACCTCTCTAATCG 59.542 44.000 0.00 0.00 0.00 3.34
2147 2324 5.458126 CCTAAAAACGTACCTCTCTAATCGC 59.542 44.000 0.00 0.00 0.00 4.58
2148 2325 3.433513 AAACGTACCTCTCTAATCGCC 57.566 47.619 0.00 0.00 0.00 5.54
2149 2326 2.048444 ACGTACCTCTCTAATCGCCA 57.952 50.000 0.00 0.00 0.00 5.69
2150 2327 1.674962 ACGTACCTCTCTAATCGCCAC 59.325 52.381 0.00 0.00 0.00 5.01
2151 2328 1.674441 CGTACCTCTCTAATCGCCACA 59.326 52.381 0.00 0.00 0.00 4.17
2152 2329 2.541178 CGTACCTCTCTAATCGCCACAC 60.541 54.545 0.00 0.00 0.00 3.82
2153 2330 1.557099 ACCTCTCTAATCGCCACACA 58.443 50.000 0.00 0.00 0.00 3.72
2154 2331 1.478510 ACCTCTCTAATCGCCACACAG 59.521 52.381 0.00 0.00 0.00 3.66
2155 2332 1.751351 CCTCTCTAATCGCCACACAGA 59.249 52.381 0.00 0.00 0.00 3.41
2156 2333 2.166459 CCTCTCTAATCGCCACACAGAA 59.834 50.000 0.00 0.00 0.00 3.02
2157 2334 3.443037 CTCTCTAATCGCCACACAGAAG 58.557 50.000 0.00 0.00 0.00 2.85
2158 2335 3.089284 TCTCTAATCGCCACACAGAAGA 58.911 45.455 0.00 0.00 0.00 2.87
2159 2336 3.119459 TCTCTAATCGCCACACAGAAGAC 60.119 47.826 0.00 0.00 0.00 3.01
2160 2337 2.094182 TCTAATCGCCACACAGAAGACC 60.094 50.000 0.00 0.00 0.00 3.85
2161 2338 0.321653 AATCGCCACACAGAAGACCC 60.322 55.000 0.00 0.00 0.00 4.46
2162 2339 2.507110 ATCGCCACACAGAAGACCCG 62.507 60.000 0.00 0.00 0.00 5.28
2163 2340 2.741092 GCCACACAGAAGACCCGA 59.259 61.111 0.00 0.00 0.00 5.14
2164 2341 1.296715 GCCACACAGAAGACCCGAT 59.703 57.895 0.00 0.00 0.00 4.18
2165 2342 0.741221 GCCACACAGAAGACCCGATC 60.741 60.000 0.00 0.00 0.00 3.69
2166 2343 0.108138 CCACACAGAAGACCCGATCC 60.108 60.000 0.00 0.00 0.00 3.36
2167 2344 0.898320 CACACAGAAGACCCGATCCT 59.102 55.000 0.00 0.00 0.00 3.24
2168 2345 2.100197 CACACAGAAGACCCGATCCTA 58.900 52.381 0.00 0.00 0.00 2.94
2169 2346 2.695666 CACACAGAAGACCCGATCCTAT 59.304 50.000 0.00 0.00 0.00 2.57
2170 2347 3.133003 CACACAGAAGACCCGATCCTATT 59.867 47.826 0.00 0.00 0.00 1.73
2171 2348 3.385111 ACACAGAAGACCCGATCCTATTC 59.615 47.826 0.00 0.00 0.00 1.75
2172 2349 2.966516 ACAGAAGACCCGATCCTATTCC 59.033 50.000 0.00 0.00 0.00 3.01
2173 2350 2.029828 CAGAAGACCCGATCCTATTCCG 60.030 54.545 0.00 0.00 0.00 4.30
2174 2351 0.680061 AAGACCCGATCCTATTCCGC 59.320 55.000 0.00 0.00 0.00 5.54
2175 2352 1.080705 GACCCGATCCTATTCCGCG 60.081 63.158 0.00 0.00 0.00 6.46
2176 2353 2.432628 CCCGATCCTATTCCGCGC 60.433 66.667 0.00 0.00 0.00 6.86
2177 2354 2.432628 CCGATCCTATTCCGCGCC 60.433 66.667 0.00 0.00 0.00 6.53
2178 2355 2.651361 CGATCCTATTCCGCGCCT 59.349 61.111 0.00 0.00 0.00 5.52
2179 2356 1.006102 CGATCCTATTCCGCGCCTT 60.006 57.895 0.00 0.00 0.00 4.35
2180 2357 0.242825 CGATCCTATTCCGCGCCTTA 59.757 55.000 0.00 0.00 0.00 2.69
2181 2358 1.336517 CGATCCTATTCCGCGCCTTAA 60.337 52.381 0.00 0.00 0.00 1.85
2182 2359 2.338500 GATCCTATTCCGCGCCTTAAG 58.662 52.381 0.00 0.00 0.00 1.85
2183 2360 1.117150 TCCTATTCCGCGCCTTAAGT 58.883 50.000 0.00 0.00 0.00 2.24
2184 2361 1.202486 TCCTATTCCGCGCCTTAAGTG 60.202 52.381 0.00 0.00 0.00 3.16
2190 2367 3.053896 GCGCCTTAAGTGCCGGTT 61.054 61.111 1.90 0.00 46.76 4.44
2191 2368 1.742510 GCGCCTTAAGTGCCGGTTA 60.743 57.895 1.90 0.00 46.76 2.85
2192 2369 1.300266 GCGCCTTAAGTGCCGGTTAA 61.300 55.000 1.90 0.00 46.76 2.01
2193 2370 1.158434 CGCCTTAAGTGCCGGTTAAA 58.842 50.000 1.90 0.00 0.00 1.52
2194 2371 1.129811 CGCCTTAAGTGCCGGTTAAAG 59.870 52.381 1.90 0.24 0.00 1.85
2195 2372 1.135489 GCCTTAAGTGCCGGTTAAAGC 60.135 52.381 1.90 2.00 0.00 3.51
2196 2373 1.471287 CCTTAAGTGCCGGTTAAAGCC 59.529 52.381 1.90 0.00 0.00 4.35
2197 2374 2.156098 CTTAAGTGCCGGTTAAAGCCA 58.844 47.619 1.90 0.00 0.00 4.75
2198 2375 1.525941 TAAGTGCCGGTTAAAGCCAC 58.474 50.000 1.90 0.00 0.00 5.01
2199 2376 1.176619 AAGTGCCGGTTAAAGCCACC 61.177 55.000 1.90 0.00 0.00 4.61
2200 2377 2.282603 TGCCGGTTAAAGCCACCC 60.283 61.111 1.90 0.00 0.00 4.61
2201 2378 3.066190 GCCGGTTAAAGCCACCCC 61.066 66.667 1.90 0.00 0.00 4.95
2202 2379 2.361992 CCGGTTAAAGCCACCCCC 60.362 66.667 0.00 0.00 0.00 5.40
2233 2410 4.976925 CGCCGCCCCTATGCTCTG 62.977 72.222 0.00 0.00 0.00 3.35
2234 2411 4.632974 GCCGCCCCTATGCTCTGG 62.633 72.222 0.00 0.00 0.00 3.86
2235 2412 3.946201 CCGCCCCTATGCTCTGGG 61.946 72.222 0.00 0.00 42.98 4.45
2236 2413 2.844362 CGCCCCTATGCTCTGGGA 60.844 66.667 9.52 0.00 46.15 4.37
2237 2414 2.832498 GCCCCTATGCTCTGGGAC 59.168 66.667 9.52 0.00 46.15 4.46
2238 2415 3.142393 CCCCTATGCTCTGGGACG 58.858 66.667 9.52 0.00 46.15 4.79
2239 2416 2.511452 CCCCTATGCTCTGGGACGG 61.511 68.421 9.52 0.00 46.15 4.79
2240 2417 2.423446 CCTATGCTCTGGGACGGC 59.577 66.667 0.00 0.00 32.53 5.68
2241 2418 2.434843 CCTATGCTCTGGGACGGCA 61.435 63.158 0.00 0.00 40.32 5.69
2242 2419 1.227380 CTATGCTCTGGGACGGCAC 60.227 63.158 0.00 0.00 38.83 5.01
2243 2420 1.960040 CTATGCTCTGGGACGGCACA 61.960 60.000 0.00 0.00 38.83 4.57
2244 2421 1.337384 TATGCTCTGGGACGGCACAT 61.337 55.000 0.00 0.00 38.83 3.21
2245 2422 2.045926 GCTCTGGGACGGCACATT 60.046 61.111 0.00 0.00 32.53 2.71
2246 2423 1.675641 GCTCTGGGACGGCACATTT 60.676 57.895 0.00 0.00 32.53 2.32
2247 2424 0.392461 GCTCTGGGACGGCACATTTA 60.392 55.000 0.00 0.00 32.53 1.40
2248 2425 1.369625 CTCTGGGACGGCACATTTAC 58.630 55.000 0.00 0.00 32.53 2.01
2249 2426 0.981183 TCTGGGACGGCACATTTACT 59.019 50.000 0.00 0.00 32.53 2.24
2250 2427 1.066430 TCTGGGACGGCACATTTACTC 60.066 52.381 0.00 0.00 32.53 2.59
2251 2428 0.981183 TGGGACGGCACATTTACTCT 59.019 50.000 0.00 0.00 0.00 3.24
2252 2429 1.349688 TGGGACGGCACATTTACTCTT 59.650 47.619 0.00 0.00 0.00 2.85
2253 2430 2.007608 GGGACGGCACATTTACTCTTC 58.992 52.381 0.00 0.00 0.00 2.87
2254 2431 1.659098 GGACGGCACATTTACTCTTCG 59.341 52.381 0.00 0.00 0.00 3.79
2255 2432 2.334838 GACGGCACATTTACTCTTCGT 58.665 47.619 0.00 0.00 0.00 3.85
2256 2433 2.066262 ACGGCACATTTACTCTTCGTG 58.934 47.619 0.00 0.00 0.00 4.35
2257 2434 2.066262 CGGCACATTTACTCTTCGTGT 58.934 47.619 0.00 0.00 0.00 4.49
2258 2435 2.159841 CGGCACATTTACTCTTCGTGTG 60.160 50.000 0.00 0.00 42.19 3.82
2259 2436 2.806244 GGCACATTTACTCTTCGTGTGT 59.194 45.455 5.80 0.00 41.53 3.72
2260 2437 3.363970 GGCACATTTACTCTTCGTGTGTG 60.364 47.826 5.80 0.00 41.53 3.82
2261 2438 3.493129 GCACATTTACTCTTCGTGTGTGA 59.507 43.478 6.76 0.00 41.53 3.58
2262 2439 4.608445 GCACATTTACTCTTCGTGTGTGAC 60.608 45.833 6.76 0.00 41.53 3.67
2263 2440 4.506288 CACATTTACTCTTCGTGTGTGACA 59.494 41.667 0.00 0.00 37.17 3.58
2264 2441 5.177511 CACATTTACTCTTCGTGTGTGACAT 59.822 40.000 0.00 0.00 37.17 3.06
2265 2442 5.177511 ACATTTACTCTTCGTGTGTGACATG 59.822 40.000 0.00 0.00 36.48 3.21
2266 2443 4.577834 TTACTCTTCGTGTGTGACATGA 57.422 40.909 0.00 0.00 41.94 3.07
2267 2444 3.667497 ACTCTTCGTGTGTGACATGAT 57.333 42.857 0.00 0.00 43.00 2.45
2268 2445 3.995199 ACTCTTCGTGTGTGACATGATT 58.005 40.909 0.00 0.00 43.00 2.57
2269 2446 3.990469 ACTCTTCGTGTGTGACATGATTC 59.010 43.478 0.00 0.00 43.00 2.52
2270 2447 2.986479 TCTTCGTGTGTGACATGATTCG 59.014 45.455 0.00 0.00 43.00 3.34
2271 2448 2.715737 TCGTGTGTGACATGATTCGA 57.284 45.000 0.00 0.00 39.05 3.71
2272 2449 3.019933 TCGTGTGTGACATGATTCGAA 57.980 42.857 0.00 0.00 39.05 3.71
2273 2450 2.729360 TCGTGTGTGACATGATTCGAAC 59.271 45.455 0.00 0.00 39.05 3.95
2274 2451 2.731451 CGTGTGTGACATGATTCGAACT 59.269 45.455 0.00 0.00 37.29 3.01
2275 2452 3.181540 CGTGTGTGACATGATTCGAACTC 60.182 47.826 0.00 0.12 37.29 3.01
2276 2453 3.740832 GTGTGTGACATGATTCGAACTCA 59.259 43.478 0.00 6.37 0.00 3.41
2277 2454 4.211164 GTGTGTGACATGATTCGAACTCAA 59.789 41.667 0.00 0.00 0.00 3.02
2278 2455 4.211164 TGTGTGACATGATTCGAACTCAAC 59.789 41.667 0.00 2.26 0.00 3.18
2279 2456 4.211164 GTGTGACATGATTCGAACTCAACA 59.789 41.667 0.00 4.68 0.00 3.33
2280 2457 4.211164 TGTGACATGATTCGAACTCAACAC 59.789 41.667 21.00 21.00 0.00 3.32
2281 2458 3.745975 TGACATGATTCGAACTCAACACC 59.254 43.478 0.00 0.00 0.00 4.16
2282 2459 3.738982 ACATGATTCGAACTCAACACCA 58.261 40.909 0.00 0.00 0.00 4.17
2283 2460 3.498397 ACATGATTCGAACTCAACACCAC 59.502 43.478 0.00 0.00 0.00 4.16
2284 2461 2.489971 TGATTCGAACTCAACACCACC 58.510 47.619 0.00 0.00 0.00 4.61
2285 2462 1.804748 GATTCGAACTCAACACCACCC 59.195 52.381 0.00 0.00 0.00 4.61
2286 2463 0.531090 TTCGAACTCAACACCACCCG 60.531 55.000 0.00 0.00 0.00 5.28
2287 2464 1.959226 CGAACTCAACACCACCCGG 60.959 63.158 0.00 0.00 38.77 5.73
2289 2466 0.464916 GAACTCAACACCACCCGGTT 60.465 55.000 0.00 0.00 46.31 4.44
2290 2467 0.033894 AACTCAACACCACCCGGTTT 60.034 50.000 0.00 0.00 46.31 3.27
2291 2468 0.033894 ACTCAACACCACCCGGTTTT 60.034 50.000 0.00 0.00 46.31 2.43
2292 2469 1.212441 ACTCAACACCACCCGGTTTTA 59.788 47.619 0.00 0.00 46.31 1.52
2293 2470 1.877443 CTCAACACCACCCGGTTTTAG 59.123 52.381 0.00 0.00 46.31 1.85
2294 2471 1.212441 TCAACACCACCCGGTTTTAGT 59.788 47.619 0.00 0.00 46.31 2.24
2295 2472 2.437281 TCAACACCACCCGGTTTTAGTA 59.563 45.455 0.00 0.00 46.31 1.82
2296 2473 2.549064 ACACCACCCGGTTTTAGTAC 57.451 50.000 0.00 0.00 46.31 2.73
2297 2474 1.767681 ACACCACCCGGTTTTAGTACA 59.232 47.619 0.00 0.00 46.31 2.90
2298 2475 2.172293 ACACCACCCGGTTTTAGTACAA 59.828 45.455 0.00 0.00 46.31 2.41
2299 2476 3.212685 CACCACCCGGTTTTAGTACAAA 58.787 45.455 0.00 0.00 46.31 2.83
2300 2477 3.003585 CACCACCCGGTTTTAGTACAAAC 59.996 47.826 0.00 0.00 46.31 2.93
2301 2478 2.223845 CCACCCGGTTTTAGTACAAACG 59.776 50.000 0.00 0.00 37.50 3.60
2302 2479 1.872952 ACCCGGTTTTAGTACAAACGC 59.127 47.619 0.00 0.00 37.50 4.84
2303 2480 1.872313 CCCGGTTTTAGTACAAACGCA 59.128 47.619 0.00 0.00 37.50 5.24
2304 2481 2.485038 CCCGGTTTTAGTACAAACGCAT 59.515 45.455 0.00 0.00 37.50 4.73
2305 2482 3.683822 CCCGGTTTTAGTACAAACGCATA 59.316 43.478 0.00 0.00 37.50 3.14
2306 2483 4.153835 CCCGGTTTTAGTACAAACGCATAA 59.846 41.667 0.00 0.00 37.50 1.90
2307 2484 5.334724 CCCGGTTTTAGTACAAACGCATAAA 60.335 40.000 0.00 0.00 37.50 1.40
2308 2485 5.564882 CCGGTTTTAGTACAAACGCATAAAC 59.435 40.000 0.85 0.00 37.50 2.01
2309 2486 5.564882 CGGTTTTAGTACAAACGCATAAACC 59.435 40.000 0.00 0.00 39.70 3.27
2310 2487 6.437094 GGTTTTAGTACAAACGCATAAACCA 58.563 36.000 0.00 0.00 41.63 3.67
2311 2488 6.916932 GGTTTTAGTACAAACGCATAAACCAA 59.083 34.615 0.00 0.00 41.63 3.67
2312 2489 7.113825 GGTTTTAGTACAAACGCATAAACCAAG 59.886 37.037 0.00 0.00 41.63 3.61
2313 2490 6.864360 TTAGTACAAACGCATAAACCAAGT 57.136 33.333 0.00 0.00 0.00 3.16
2314 2491 5.761165 AGTACAAACGCATAAACCAAGTT 57.239 34.783 0.00 0.00 0.00 2.66
2315 2492 5.516090 AGTACAAACGCATAAACCAAGTTG 58.484 37.500 0.00 0.00 0.00 3.16
2316 2493 3.712187 ACAAACGCATAAACCAAGTTGG 58.288 40.909 20.76 20.76 45.02 3.77
2317 2494 3.381908 ACAAACGCATAAACCAAGTTGGA 59.618 39.130 28.80 6.57 40.96 3.53
2318 2495 3.636282 AACGCATAAACCAAGTTGGAC 57.364 42.857 28.80 8.91 40.96 4.02
2319 2496 2.577700 ACGCATAAACCAAGTTGGACA 58.422 42.857 28.80 12.52 40.96 4.02
2320 2497 2.292292 ACGCATAAACCAAGTTGGACAC 59.708 45.455 28.80 9.90 40.96 3.67
2321 2498 2.552315 CGCATAAACCAAGTTGGACACT 59.448 45.455 28.80 11.25 40.96 3.55
2323 2500 4.214545 CGCATAAACCAAGTTGGACACTTA 59.785 41.667 28.80 17.71 44.60 2.24
2324 2501 5.278071 CGCATAAACCAAGTTGGACACTTAA 60.278 40.000 28.80 6.61 44.60 1.85
2325 2502 6.569610 CGCATAAACCAAGTTGGACACTTAAT 60.570 38.462 28.80 8.51 44.60 1.40
2326 2503 6.806739 GCATAAACCAAGTTGGACACTTAATC 59.193 38.462 28.80 11.02 44.60 1.75
2327 2504 7.309194 GCATAAACCAAGTTGGACACTTAATCT 60.309 37.037 28.80 0.00 44.60 2.40
2328 2505 6.391227 AAACCAAGTTGGACACTTAATCTG 57.609 37.500 28.80 0.00 44.60 2.90
2329 2506 5.048846 ACCAAGTTGGACACTTAATCTGT 57.951 39.130 28.80 0.00 44.60 3.41
2330 2507 5.445964 ACCAAGTTGGACACTTAATCTGTT 58.554 37.500 28.80 0.00 44.60 3.16
2331 2508 5.891551 ACCAAGTTGGACACTTAATCTGTTT 59.108 36.000 28.80 0.00 44.60 2.83
2332 2509 6.379988 ACCAAGTTGGACACTTAATCTGTTTT 59.620 34.615 28.80 0.00 44.60 2.43
2333 2510 6.697019 CCAAGTTGGACACTTAATCTGTTTTG 59.303 38.462 17.60 0.00 44.60 2.44
2334 2511 5.831997 AGTTGGACACTTAATCTGTTTTGC 58.168 37.500 0.00 0.00 27.32 3.68
2335 2512 4.846779 TGGACACTTAATCTGTTTTGCC 57.153 40.909 0.00 0.00 0.00 4.52
2336 2513 4.469657 TGGACACTTAATCTGTTTTGCCT 58.530 39.130 0.00 0.00 0.00 4.75
2337 2514 5.626142 TGGACACTTAATCTGTTTTGCCTA 58.374 37.500 0.00 0.00 0.00 3.93
2338 2515 5.705441 TGGACACTTAATCTGTTTTGCCTAG 59.295 40.000 0.00 0.00 0.00 3.02
2339 2516 5.938125 GGACACTTAATCTGTTTTGCCTAGA 59.062 40.000 0.00 0.00 0.00 2.43
2340 2517 6.599638 GGACACTTAATCTGTTTTGCCTAGAT 59.400 38.462 0.00 0.00 32.80 1.98
2341 2518 7.121315 GGACACTTAATCTGTTTTGCCTAGATT 59.879 37.037 0.00 0.00 42.19 2.40
2342 2519 9.162764 GACACTTAATCTGTTTTGCCTAGATTA 57.837 33.333 0.00 0.00 40.53 1.75
2343 2520 9.167311 ACACTTAATCTGTTTTGCCTAGATTAG 57.833 33.333 0.00 0.00 41.65 1.73
2371 2548 7.903995 TTTTCTCTTTTTGAAATGCAACACT 57.096 28.000 0.00 0.00 35.91 3.55
2372 2549 8.994429 TTTTCTCTTTTTGAAATGCAACACTA 57.006 26.923 0.00 0.00 35.91 2.74
2373 2550 8.994429 TTTCTCTTTTTGAAATGCAACACTAA 57.006 26.923 0.00 0.00 35.91 2.24
2374 2551 8.994429 TTCTCTTTTTGAAATGCAACACTAAA 57.006 26.923 0.00 0.00 35.91 1.85
2375 2552 8.994429 TCTCTTTTTGAAATGCAACACTAAAA 57.006 26.923 0.00 0.47 35.91 1.52
2376 2553 9.429359 TCTCTTTTTGAAATGCAACACTAAAAA 57.571 25.926 0.00 1.43 35.91 1.94
2395 2572 4.994907 AAAACCACAACTGTTTCCCTAC 57.005 40.909 0.00 0.00 34.97 3.18
2396 2573 3.945640 AACCACAACTGTTTCCCTACT 57.054 42.857 0.00 0.00 0.00 2.57
2397 2574 3.945640 ACCACAACTGTTTCCCTACTT 57.054 42.857 0.00 0.00 0.00 2.24
2398 2575 3.551846 ACCACAACTGTTTCCCTACTTG 58.448 45.455 0.00 0.00 0.00 3.16
2399 2576 2.884639 CCACAACTGTTTCCCTACTTGG 59.115 50.000 0.00 0.00 0.00 3.61
2434 2611 7.741027 TTTTTGTTTACCCGGTTTTTCTTTT 57.259 28.000 0.00 0.00 0.00 2.27
2435 2612 6.723131 TTTGTTTACCCGGTTTTTCTTTTG 57.277 33.333 0.00 0.00 0.00 2.44
2436 2613 5.656213 TGTTTACCCGGTTTTTCTTTTGA 57.344 34.783 0.00 0.00 0.00 2.69
2437 2614 6.223351 TGTTTACCCGGTTTTTCTTTTGAT 57.777 33.333 0.00 0.00 0.00 2.57
2438 2615 6.641474 TGTTTACCCGGTTTTTCTTTTGATT 58.359 32.000 0.00 0.00 0.00 2.57
2439 2616 7.104290 TGTTTACCCGGTTTTTCTTTTGATTT 58.896 30.769 0.00 0.00 0.00 2.17
2440 2617 7.606839 TGTTTACCCGGTTTTTCTTTTGATTTT 59.393 29.630 0.00 0.00 0.00 1.82
2441 2618 8.452534 GTTTACCCGGTTTTTCTTTTGATTTTT 58.547 29.630 0.00 0.00 0.00 1.94
2485 2662 9.598517 AAATTTGTGAGCTTTTCTAATTTGTGA 57.401 25.926 13.22 0.00 0.00 3.58
2486 2663 9.768662 AATTTGTGAGCTTTTCTAATTTGTGAT 57.231 25.926 0.00 0.00 0.00 3.06
2487 2664 9.768662 ATTTGTGAGCTTTTCTAATTTGTGATT 57.231 25.926 0.00 0.00 0.00 2.57
2488 2665 9.598517 TTTGTGAGCTTTTCTAATTTGTGATTT 57.401 25.926 0.00 0.00 0.00 2.17
2489 2666 9.598517 TTGTGAGCTTTTCTAATTTGTGATTTT 57.401 25.926 0.00 0.00 0.00 1.82
2490 2667 9.598517 TGTGAGCTTTTCTAATTTGTGATTTTT 57.401 25.926 0.00 0.00 0.00 1.94
2540 2717 9.919416 TCCATCTACTATTTTTCAAATCCATGA 57.081 29.630 0.00 0.00 0.00 3.07
2555 2732 9.111613 TCAAATCCATGAATATTTTCCAAATGC 57.888 29.630 0.00 0.00 0.00 3.56
2556 2733 8.894731 CAAATCCATGAATATTTTCCAAATGCA 58.105 29.630 0.00 0.00 0.00 3.96
2557 2734 8.441312 AATCCATGAATATTTTCCAAATGCAC 57.559 30.769 0.00 0.00 0.00 4.57
2558 2735 6.944096 TCCATGAATATTTTCCAAATGCACA 58.056 32.000 0.00 0.00 0.00 4.57
2559 2736 7.042950 TCCATGAATATTTTCCAAATGCACAG 58.957 34.615 0.00 0.00 0.00 3.66
2560 2737 7.042950 CCATGAATATTTTCCAAATGCACAGA 58.957 34.615 0.00 0.00 0.00 3.41
2561 2738 7.010738 CCATGAATATTTTCCAAATGCACAGAC 59.989 37.037 0.00 0.00 0.00 3.51
2562 2739 7.230849 TGAATATTTTCCAAATGCACAGACT 57.769 32.000 0.00 0.00 0.00 3.24
2563 2740 7.315142 TGAATATTTTCCAAATGCACAGACTC 58.685 34.615 0.00 0.00 0.00 3.36
2564 2741 7.177216 TGAATATTTTCCAAATGCACAGACTCT 59.823 33.333 0.00 0.00 0.00 3.24
2565 2742 5.796424 ATTTTCCAAATGCACAGACTCTT 57.204 34.783 0.00 0.00 0.00 2.85
2566 2743 5.596836 TTTTCCAAATGCACAGACTCTTT 57.403 34.783 0.00 0.00 0.00 2.52
2567 2744 5.596836 TTTCCAAATGCACAGACTCTTTT 57.403 34.783 0.00 0.00 0.00 2.27
2568 2745 4.836125 TCCAAATGCACAGACTCTTTTC 57.164 40.909 0.00 0.00 0.00 2.29
2569 2746 4.206375 TCCAAATGCACAGACTCTTTTCA 58.794 39.130 0.00 0.00 0.00 2.69
2570 2747 4.644234 TCCAAATGCACAGACTCTTTTCAA 59.356 37.500 0.00 0.00 0.00 2.69
2571 2748 4.741676 CCAAATGCACAGACTCTTTTCAAC 59.258 41.667 0.00 0.00 0.00 3.18
2572 2749 5.450965 CCAAATGCACAGACTCTTTTCAACT 60.451 40.000 0.00 0.00 0.00 3.16
2573 2750 5.841957 AATGCACAGACTCTTTTCAACTT 57.158 34.783 0.00 0.00 0.00 2.66
2574 2751 5.841957 ATGCACAGACTCTTTTCAACTTT 57.158 34.783 0.00 0.00 0.00 2.66
2575 2752 5.643379 TGCACAGACTCTTTTCAACTTTT 57.357 34.783 0.00 0.00 0.00 2.27
2576 2753 6.751514 TGCACAGACTCTTTTCAACTTTTA 57.248 33.333 0.00 0.00 0.00 1.52
2577 2754 6.551736 TGCACAGACTCTTTTCAACTTTTAC 58.448 36.000 0.00 0.00 0.00 2.01
2578 2755 6.150307 TGCACAGACTCTTTTCAACTTTTACA 59.850 34.615 0.00 0.00 0.00 2.41
2579 2756 7.148086 TGCACAGACTCTTTTCAACTTTTACAT 60.148 33.333 0.00 0.00 0.00 2.29
2580 2757 8.342634 GCACAGACTCTTTTCAACTTTTACATA 58.657 33.333 0.00 0.00 0.00 2.29
2606 2783 6.610741 TTTTTCCAAAATATGCGCACTTTT 57.389 29.167 14.90 18.89 0.00 2.27
2607 2784 5.837586 TTTCCAAAATATGCGCACTTTTC 57.162 34.783 22.69 0.00 0.00 2.29
2608 2785 4.782019 TCCAAAATATGCGCACTTTTCT 57.218 36.364 22.69 6.83 0.00 2.52
2609 2786 4.732784 TCCAAAATATGCGCACTTTTCTC 58.267 39.130 22.69 0.00 0.00 2.87
2610 2787 3.859386 CCAAAATATGCGCACTTTTCTCC 59.141 43.478 22.69 0.00 0.00 3.71
2611 2788 3.782889 AAATATGCGCACTTTTCTCCC 57.217 42.857 14.90 0.00 0.00 4.30
2612 2789 2.418368 ATATGCGCACTTTTCTCCCA 57.582 45.000 14.90 0.00 0.00 4.37
2613 2790 2.192664 TATGCGCACTTTTCTCCCAA 57.807 45.000 14.90 0.00 0.00 4.12
2614 2791 1.549203 ATGCGCACTTTTCTCCCAAT 58.451 45.000 14.90 0.00 0.00 3.16
2615 2792 1.327303 TGCGCACTTTTCTCCCAATT 58.673 45.000 5.66 0.00 0.00 2.32
2616 2793 1.686052 TGCGCACTTTTCTCCCAATTT 59.314 42.857 5.66 0.00 0.00 1.82
2617 2794 2.102252 TGCGCACTTTTCTCCCAATTTT 59.898 40.909 5.66 0.00 0.00 1.82
2618 2795 3.130633 GCGCACTTTTCTCCCAATTTTT 58.869 40.909 0.30 0.00 0.00 1.94
2619 2796 3.059665 GCGCACTTTTCTCCCAATTTTTG 60.060 43.478 0.30 0.00 0.00 2.44
2620 2797 4.367450 CGCACTTTTCTCCCAATTTTTGA 58.633 39.130 0.00 0.00 0.00 2.69
2621 2798 4.808364 CGCACTTTTCTCCCAATTTTTGAA 59.192 37.500 0.00 0.00 0.00 2.69
2622 2799 5.466393 CGCACTTTTCTCCCAATTTTTGAAT 59.534 36.000 0.00 0.00 0.00 2.57
2623 2800 6.018016 CGCACTTTTCTCCCAATTTTTGAATT 60.018 34.615 0.00 0.00 0.00 2.17
2624 2801 7.467131 CGCACTTTTCTCCCAATTTTTGAATTT 60.467 33.333 0.00 0.00 0.00 1.82
2625 2802 8.190122 GCACTTTTCTCCCAATTTTTGAATTTT 58.810 29.630 0.00 0.00 0.00 1.82
2659 2836 9.790344 AATCATTGAATTGTTTTAAACCCATGA 57.210 25.926 5.32 3.82 0.00 3.07
2660 2837 9.790344 ATCATTGAATTGTTTTAAACCCATGAA 57.210 25.926 5.32 0.00 0.00 2.57
2661 2838 9.270640 TCATTGAATTGTTTTAAACCCATGAAG 57.729 29.630 5.32 0.00 0.00 3.02
2662 2839 9.054922 CATTGAATTGTTTTAAACCCATGAAGT 57.945 29.630 5.32 0.00 0.00 3.01
2663 2840 9.625747 ATTGAATTGTTTTAAACCCATGAAGTT 57.374 25.926 5.32 0.00 0.00 2.66
2664 2841 9.454859 TTGAATTGTTTTAAACCCATGAAGTTT 57.545 25.926 15.33 15.33 40.43 2.66
2665 2842 9.454859 TGAATTGTTTTAAACCCATGAAGTTTT 57.545 25.926 15.96 3.49 38.37 2.43
2677 2854 9.454859 AACCCATGAAGTTTTATTTCAAAAACA 57.545 25.926 13.02 1.95 46.88 2.83
2678 2855 8.888716 ACCCATGAAGTTTTATTTCAAAAACAC 58.111 29.630 13.02 8.07 46.88 3.32
2679 2856 8.341903 CCCATGAAGTTTTATTTCAAAAACACC 58.658 33.333 13.02 6.13 46.88 4.16
2680 2857 8.887717 CCATGAAGTTTTATTTCAAAAACACCA 58.112 29.630 13.02 10.32 46.88 4.17
2683 2860 9.658799 TGAAGTTTTATTTCAAAAACACCATGA 57.341 25.926 13.02 0.00 46.88 3.07
2686 2863 9.442047 AGTTTTATTTCAAAAACACCATGAACA 57.558 25.926 13.02 0.00 46.88 3.18
2692 2869 7.912056 TTCAAAAACACCATGAACATTTTCA 57.088 28.000 0.00 0.00 45.93 2.69
2693 2870 7.912056 TCAAAAACACCATGAACATTTTCAA 57.088 28.000 0.00 0.00 45.01 2.69
2694 2871 7.746929 TCAAAAACACCATGAACATTTTCAAC 58.253 30.769 0.00 0.00 45.01 3.18
2695 2872 7.605691 TCAAAAACACCATGAACATTTTCAACT 59.394 29.630 0.00 0.00 45.01 3.16
2696 2873 7.920160 AAAACACCATGAACATTTTCAACTT 57.080 28.000 0.00 0.00 45.01 2.66
2697 2874 7.538303 AAACACCATGAACATTTTCAACTTC 57.462 32.000 0.00 0.00 45.01 3.01
2698 2875 6.219417 ACACCATGAACATTTTCAACTTCA 57.781 33.333 0.00 0.00 45.01 3.02
2699 2876 6.819284 ACACCATGAACATTTTCAACTTCAT 58.181 32.000 0.00 0.00 45.01 2.57
2700 2877 7.950512 ACACCATGAACATTTTCAACTTCATA 58.049 30.769 0.00 0.00 45.01 2.15
2701 2878 8.420222 ACACCATGAACATTTTCAACTTCATAA 58.580 29.630 0.00 0.00 45.01 1.90
2702 2879 9.258826 CACCATGAACATTTTCAACTTCATAAA 57.741 29.630 0.00 0.00 45.01 1.40
2703 2880 9.260002 ACCATGAACATTTTCAACTTCATAAAC 57.740 29.630 0.00 0.00 45.01 2.01
2704 2881 9.480053 CCATGAACATTTTCAACTTCATAAACT 57.520 29.630 0.00 0.00 45.01 2.66
2728 2905 9.581099 ACTTTTTGAAAACAAATATCGTGAACT 57.419 25.926 0.00 0.00 0.00 3.01
2734 2911 8.738554 TGAAAACAAATATCGTGAACTTTTTCG 58.261 29.630 0.00 0.00 34.59 3.46
2735 2912 8.844441 AAAACAAATATCGTGAACTTTTTCGA 57.156 26.923 0.00 0.00 34.04 3.71
2736 2913 8.844441 AAACAAATATCGTGAACTTTTTCGAA 57.156 26.923 0.00 0.00 35.99 3.71
2737 2914 9.458374 AAACAAATATCGTGAACTTTTTCGAAT 57.542 25.926 0.00 0.00 35.99 3.34
2738 2915 9.458374 AACAAATATCGTGAACTTTTTCGAATT 57.542 25.926 0.00 0.00 35.99 2.17
2739 2916 9.113876 ACAAATATCGTGAACTTTTTCGAATTC 57.886 29.630 0.00 0.00 35.99 2.17
2740 2917 7.932643 AATATCGTGAACTTTTTCGAATTCG 57.067 32.000 21.78 21.78 41.45 3.34
2741 2918 4.782252 TCGTGAACTTTTTCGAATTCGT 57.218 36.364 25.93 6.16 40.80 3.85
2742 2919 5.886715 TCGTGAACTTTTTCGAATTCGTA 57.113 34.783 25.93 15.34 40.80 3.43
2743 2920 6.271396 TCGTGAACTTTTTCGAATTCGTAA 57.729 33.333 25.93 20.34 40.80 3.18
2744 2921 6.703857 TCGTGAACTTTTTCGAATTCGTAAA 58.296 32.000 25.93 24.54 40.80 2.01
2745 2922 6.624526 TCGTGAACTTTTTCGAATTCGTAAAC 59.375 34.615 25.91 17.26 38.11 2.01
2746 2923 6.408611 CGTGAACTTTTTCGAATTCGTAAACA 59.591 34.615 25.91 19.11 38.11 2.83
2747 2924 7.111041 CGTGAACTTTTTCGAATTCGTAAACAT 59.889 33.333 25.91 16.76 38.11 2.71
2748 2925 8.739461 GTGAACTTTTTCGAATTCGTAAACATT 58.261 29.630 25.91 22.16 38.11 2.71
2749 2926 9.291664 TGAACTTTTTCGAATTCGTAAACATTT 57.708 25.926 25.91 19.48 38.11 2.32
2751 2928 9.894439 AACTTTTTCGAATTCGTAAACATTTTG 57.106 25.926 25.91 16.23 38.11 2.44
2752 2929 9.078753 ACTTTTTCGAATTCGTAAACATTTTGT 57.921 25.926 25.91 16.69 38.11 2.83
2774 2951 9.672673 TTTGTAAAAATCCTGAATTGTTTTCCA 57.327 25.926 0.00 0.00 0.00 3.53
2775 2952 9.672673 TTGTAAAAATCCTGAATTGTTTTCCAA 57.327 25.926 0.00 0.00 37.49 3.53
2776 2953 9.323985 TGTAAAAATCCTGAATTGTTTTCCAAG 57.676 29.630 0.00 0.00 36.25 3.61
2777 2954 9.541143 GTAAAAATCCTGAATTGTTTTCCAAGA 57.459 29.630 0.00 0.00 36.25 3.02
2778 2955 8.437360 AAAAATCCTGAATTGTTTTCCAAGAC 57.563 30.769 0.00 0.00 36.25 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
214 215 6.562518 TGTTTACATAACATCCGTGATCGTA 58.437 36.000 0.00 0.00 35.01 3.43
252 253 2.254546 TTGGAAGTGATCGTGCAGTT 57.745 45.000 0.00 1.08 34.28 3.16
253 254 2.350522 GATTGGAAGTGATCGTGCAGT 58.649 47.619 0.00 0.00 0.00 4.40
254 255 1.325640 CGATTGGAAGTGATCGTGCAG 59.674 52.381 0.00 0.00 40.05 4.41
256 257 0.026803 GCGATTGGAAGTGATCGTGC 59.973 55.000 7.45 0.00 45.07 5.34
259 260 0.848942 CTCGCGATTGGAAGTGATCG 59.151 55.000 10.36 1.70 45.81 3.69
268 312 1.741401 TGCAGTTCCTCGCGATTGG 60.741 57.895 10.36 9.00 0.00 3.16
310 354 1.522569 GGCGGCAGAGGTAATCACT 59.477 57.895 3.07 0.00 0.00 3.41
573 619 3.723235 ATCTCCAACGAGCGCGCAT 62.723 57.895 35.10 18.69 42.48 4.73
689 735 0.302890 CAACTCCATCAATCTCGCGC 59.697 55.000 0.00 0.00 0.00 6.86
706 752 0.865111 CGAATCCAACACACGAGCAA 59.135 50.000 0.00 0.00 0.00 3.91
713 763 0.605319 GACCTGCCGAATCCAACACA 60.605 55.000 0.00 0.00 0.00 3.72
798 857 3.116317 ACCCCTGTCTAGCCCTGTATAAT 60.116 47.826 0.00 0.00 0.00 1.28
819 878 3.056313 GCCGCAGCCCAGATTCAAC 62.056 63.158 0.00 0.00 0.00 3.18
881 940 1.774856 GCTCCCCCTAGCCTAATTTCA 59.225 52.381 0.00 0.00 36.45 2.69
905 965 1.306141 CCTACTGGACCCCTGCTCA 60.306 63.158 0.00 0.00 34.57 4.26
914 974 0.320697 AGCCACGAAACCTACTGGAC 59.679 55.000 0.00 0.00 37.04 4.02
945 1006 3.978723 CTGGACGAGCGAGTGCCTG 62.979 68.421 0.00 0.00 44.31 4.85
946 1007 3.753434 CTGGACGAGCGAGTGCCT 61.753 66.667 0.00 0.00 44.31 4.75
947 1008 3.749064 TCTGGACGAGCGAGTGCC 61.749 66.667 0.00 0.00 44.31 5.01
965 1026 0.979665 TTTGCCTCTGGACTCTGGAG 59.020 55.000 0.00 0.00 0.00 3.86
969 1030 1.346068 GTGAGTTTGCCTCTGGACTCT 59.654 52.381 0.00 0.00 41.11 3.24
979 1040 2.600470 GGGGTGGGTGAGTTTGCC 60.600 66.667 0.00 0.00 0.00 4.52
980 1041 1.603739 GAGGGGTGGGTGAGTTTGC 60.604 63.158 0.00 0.00 0.00 3.68
981 1042 0.537371 GTGAGGGGTGGGTGAGTTTG 60.537 60.000 0.00 0.00 0.00 2.93
988 1049 3.001406 GTAGCGTGAGGGGTGGGT 61.001 66.667 0.00 0.00 0.00 4.51
1003 1064 1.476845 TTGCCTCTCCTTGGTGCGTA 61.477 55.000 0.00 0.00 0.00 4.42
1027 1088 0.250166 GGTGGGCAGTCGTTACAGTT 60.250 55.000 0.00 0.00 0.00 3.16
1028 1089 1.370064 GGTGGGCAGTCGTTACAGT 59.630 57.895 0.00 0.00 0.00 3.55
1504 1649 2.105134 GAGGAGAGGAGAGTATCGTCCA 59.895 54.545 3.93 0.00 42.63 4.02
1505 1650 2.370849 AGAGGAGAGGAGAGTATCGTCC 59.629 54.545 3.93 0.00 42.63 4.79
1608 1762 8.442605 AATGTTCGTTTAAACATACCGAATTG 57.557 30.769 18.07 0.00 46.49 2.32
1642 1796 4.377124 GCCAAGAAAGAAACAGTACTACGC 60.377 45.833 0.00 0.00 0.00 4.42
1654 1815 1.286354 CGTACGCGGCCAAGAAAGAA 61.286 55.000 12.47 0.00 0.00 2.52
1726 1902 3.072184 AGCAGTCTCAATGGACTCTTGTT 59.928 43.478 2.17 0.00 43.75 2.83
1760 1936 9.672673 AGACACTACTAATGAAGCAATGTTAAT 57.327 29.630 0.00 0.00 0.00 1.40
1761 1937 8.935844 CAGACACTACTAATGAAGCAATGTTAA 58.064 33.333 0.00 0.00 0.00 2.01
1778 1954 4.691216 CCTTGGAAGTTAAGCAGACACTAC 59.309 45.833 0.00 0.00 0.00 2.73
1784 1960 4.142038 GGAAACCTTGGAAGTTAAGCAGA 58.858 43.478 0.00 0.00 0.00 4.26
1807 1983 4.335594 AGCTGTGGTCAAAGTTGTAAGTTC 59.664 41.667 0.00 0.00 0.00 3.01
1836 2012 2.597510 AAACGGGGACTTGGCAGC 60.598 61.111 0.00 0.00 0.00 5.25
1845 2021 1.064611 TCACTTTGTTCCAAACGGGGA 60.065 47.619 0.00 0.00 37.22 4.81
1864 2040 5.574970 ATCCTCCAAAATCCTATGTCCTC 57.425 43.478 0.00 0.00 0.00 3.71
1916 2093 7.950124 TGAGGGGAAGAAAATTTCTCTACATTT 59.050 33.333 8.86 0.00 39.61 2.32
1917 2094 7.470192 TGAGGGGAAGAAAATTTCTCTACATT 58.530 34.615 8.86 0.00 39.61 2.71
1918 2095 7.032598 TGAGGGGAAGAAAATTTCTCTACAT 57.967 36.000 8.86 0.01 39.61 2.29
1919 2096 6.448369 TGAGGGGAAGAAAATTTCTCTACA 57.552 37.500 8.86 2.21 39.61 2.74
1920 2097 7.761038 TTTGAGGGGAAGAAAATTTCTCTAC 57.239 36.000 8.86 4.23 39.61 2.59
1921 2098 8.776061 TTTTTGAGGGGAAGAAAATTTCTCTA 57.224 30.769 8.86 0.00 39.61 2.43
1922 2099 7.675161 TTTTTGAGGGGAAGAAAATTTCTCT 57.325 32.000 8.86 1.63 39.61 3.10
1964 2141 4.809958 TCTTTGTTCCAAATTGCACACATG 59.190 37.500 0.00 0.00 0.00 3.21
1965 2142 5.021033 TCTTTGTTCCAAATTGCACACAT 57.979 34.783 0.00 0.00 0.00 3.21
1966 2143 4.462508 TCTTTGTTCCAAATTGCACACA 57.537 36.364 0.00 0.00 0.00 3.72
1967 2144 5.793026 TTTCTTTGTTCCAAATTGCACAC 57.207 34.783 0.00 0.00 0.00 3.82
1968 2145 6.783162 CAATTTCTTTGTTCCAAATTGCACA 58.217 32.000 4.01 0.00 39.43 4.57
1972 2149 8.445493 GGATAGCAATTTCTTTGTTCCAAATTG 58.555 33.333 10.60 10.60 44.80 2.32
1973 2150 8.377799 AGGATAGCAATTTCTTTGTTCCAAATT 58.622 29.630 0.00 0.00 37.65 1.82
1974 2151 7.910584 AGGATAGCAATTTCTTTGTTCCAAAT 58.089 30.769 0.00 0.00 37.65 2.32
1975 2152 7.301868 AGGATAGCAATTTCTTTGTTCCAAA 57.698 32.000 0.00 0.00 37.65 3.28
1976 2153 6.916360 AGGATAGCAATTTCTTTGTTCCAA 57.084 33.333 0.00 0.00 37.65 3.53
1977 2154 6.945435 TGTAGGATAGCAATTTCTTTGTTCCA 59.055 34.615 0.00 0.00 37.65 3.53
1978 2155 7.391148 TGTAGGATAGCAATTTCTTTGTTCC 57.609 36.000 0.00 0.00 37.65 3.62
1996 2173 9.753674 ACAGAGGAAATTCAAAATAATGTAGGA 57.246 29.630 0.00 0.00 0.00 2.94
2003 2180 9.651913 GCCAATTACAGAGGAAATTCAAAATAA 57.348 29.630 0.00 0.00 0.00 1.40
2004 2181 9.034800 AGCCAATTACAGAGGAAATTCAAAATA 57.965 29.630 0.00 0.00 0.00 1.40
2005 2182 7.910584 AGCCAATTACAGAGGAAATTCAAAAT 58.089 30.769 0.00 0.00 0.00 1.82
2006 2183 7.301868 AGCCAATTACAGAGGAAATTCAAAA 57.698 32.000 0.00 0.00 0.00 2.44
2007 2184 6.916360 AGCCAATTACAGAGGAAATTCAAA 57.084 33.333 0.00 0.00 0.00 2.69
2008 2185 8.593945 AATAGCCAATTACAGAGGAAATTCAA 57.406 30.769 0.00 0.00 0.00 2.69
2009 2186 7.285401 GGAATAGCCAATTACAGAGGAAATTCA 59.715 37.037 0.00 0.00 36.34 2.57
2010 2187 7.285401 TGGAATAGCCAATTACAGAGGAAATTC 59.715 37.037 0.00 0.00 45.87 2.17
2011 2188 7.125391 TGGAATAGCCAATTACAGAGGAAATT 58.875 34.615 0.00 0.00 45.87 1.82
2012 2189 6.672593 TGGAATAGCCAATTACAGAGGAAAT 58.327 36.000 0.00 0.00 45.87 2.17
2013 2190 6.073447 TGGAATAGCCAATTACAGAGGAAA 57.927 37.500 0.00 0.00 45.87 3.13
2014 2191 5.708736 TGGAATAGCCAATTACAGAGGAA 57.291 39.130 0.00 0.00 45.87 3.36
2027 2204 5.536161 TGCTCCAAAATTCTATGGAATAGCC 59.464 40.000 16.40 4.55 46.55 3.93
2028 2205 6.639632 TGCTCCAAAATTCTATGGAATAGC 57.360 37.500 13.66 13.66 46.55 2.97
2029 2206 7.922811 GGTTTGCTCCAAAATTCTATGGAATAG 59.077 37.037 4.56 0.00 44.77 1.73
2030 2207 7.398618 TGGTTTGCTCCAAAATTCTATGGAATA 59.601 33.333 4.56 0.00 44.77 1.75
2031 2208 6.213195 TGGTTTGCTCCAAAATTCTATGGAAT 59.787 34.615 0.00 0.00 44.77 3.01
2032 2209 5.541868 TGGTTTGCTCCAAAATTCTATGGAA 59.458 36.000 8.43 0.00 44.77 3.53
2033 2210 5.083122 TGGTTTGCTCCAAAATTCTATGGA 58.917 37.500 7.21 7.21 43.32 3.41
2034 2211 5.404466 TGGTTTGCTCCAAAATTCTATGG 57.596 39.130 0.00 0.00 35.03 2.74
2044 2221 3.964031 ACCTTATGTTTGGTTTGCTCCAA 59.036 39.130 4.89 4.89 44.48 3.53
2045 2222 3.571590 ACCTTATGTTTGGTTTGCTCCA 58.428 40.909 0.00 0.00 31.62 3.86
2046 2223 3.056821 GGACCTTATGTTTGGTTTGCTCC 60.057 47.826 0.00 0.00 36.59 4.70
2047 2224 3.826729 AGGACCTTATGTTTGGTTTGCTC 59.173 43.478 0.00 0.00 36.59 4.26
2048 2225 3.844640 AGGACCTTATGTTTGGTTTGCT 58.155 40.909 0.00 0.00 36.59 3.91
2049 2226 4.765339 AGTAGGACCTTATGTTTGGTTTGC 59.235 41.667 0.00 0.00 36.59 3.68
2050 2227 7.446013 TGTTAGTAGGACCTTATGTTTGGTTTG 59.554 37.037 0.00 0.00 36.59 2.93
2051 2228 7.519927 TGTTAGTAGGACCTTATGTTTGGTTT 58.480 34.615 0.00 0.00 36.59 3.27
2052 2229 7.081857 TGTTAGTAGGACCTTATGTTTGGTT 57.918 36.000 0.00 0.00 36.59 3.67
2053 2230 6.296259 CCTGTTAGTAGGACCTTATGTTTGGT 60.296 42.308 0.00 0.00 40.42 3.67
2054 2231 6.070424 TCCTGTTAGTAGGACCTTATGTTTGG 60.070 42.308 0.00 0.00 41.85 3.28
2055 2232 6.942976 TCCTGTTAGTAGGACCTTATGTTTG 58.057 40.000 0.00 0.00 41.85 2.93
2056 2233 6.958192 TCTCCTGTTAGTAGGACCTTATGTTT 59.042 38.462 0.00 0.00 41.85 2.83
2057 2234 6.500336 TCTCCTGTTAGTAGGACCTTATGTT 58.500 40.000 0.00 0.00 41.85 2.71
2058 2235 6.088541 TCTCCTGTTAGTAGGACCTTATGT 57.911 41.667 0.00 0.00 41.85 2.29
2059 2236 6.380274 TGTTCTCCTGTTAGTAGGACCTTATG 59.620 42.308 0.00 0.00 41.85 1.90
2060 2237 6.500336 TGTTCTCCTGTTAGTAGGACCTTAT 58.500 40.000 0.00 0.00 41.85 1.73
2061 2238 5.895807 TGTTCTCCTGTTAGTAGGACCTTA 58.104 41.667 0.00 0.00 41.85 2.69
2062 2239 4.748701 TGTTCTCCTGTTAGTAGGACCTT 58.251 43.478 0.00 0.00 41.85 3.50
2063 2240 4.399483 TGTTCTCCTGTTAGTAGGACCT 57.601 45.455 0.00 0.00 41.85 3.85
2064 2241 5.678955 ATTGTTCTCCTGTTAGTAGGACC 57.321 43.478 0.00 0.00 41.85 4.46
2089 2266 9.691362 GTGTTAATCTTGTGTTTTTGTCCATAT 57.309 29.630 0.00 0.00 0.00 1.78
2090 2267 8.138712 GGTGTTAATCTTGTGTTTTTGTCCATA 58.861 33.333 0.00 0.00 0.00 2.74
2091 2268 6.983890 GGTGTTAATCTTGTGTTTTTGTCCAT 59.016 34.615 0.00 0.00 0.00 3.41
2092 2269 6.334202 GGTGTTAATCTTGTGTTTTTGTCCA 58.666 36.000 0.00 0.00 0.00 4.02
2093 2270 5.457473 CGGTGTTAATCTTGTGTTTTTGTCC 59.543 40.000 0.00 0.00 0.00 4.02
2094 2271 5.051973 GCGGTGTTAATCTTGTGTTTTTGTC 60.052 40.000 0.00 0.00 0.00 3.18
2095 2272 4.801516 GCGGTGTTAATCTTGTGTTTTTGT 59.198 37.500 0.00 0.00 0.00 2.83
2096 2273 4.085822 CGCGGTGTTAATCTTGTGTTTTTG 60.086 41.667 0.00 0.00 0.00 2.44
2097 2274 4.039032 CGCGGTGTTAATCTTGTGTTTTT 58.961 39.130 0.00 0.00 0.00 1.94
2098 2275 3.065648 ACGCGGTGTTAATCTTGTGTTTT 59.934 39.130 12.47 0.00 0.00 2.43
2099 2276 2.614983 ACGCGGTGTTAATCTTGTGTTT 59.385 40.909 12.47 0.00 0.00 2.83
2100 2277 2.215196 ACGCGGTGTTAATCTTGTGTT 58.785 42.857 12.47 0.00 0.00 3.32
2101 2278 1.873698 ACGCGGTGTTAATCTTGTGT 58.126 45.000 12.47 0.00 0.00 3.72
2102 2279 2.222729 GCTACGCGGTGTTAATCTTGTG 60.223 50.000 12.47 0.00 0.00 3.33
2103 2280 1.997606 GCTACGCGGTGTTAATCTTGT 59.002 47.619 12.47 0.00 0.00 3.16
2104 2281 1.326548 GGCTACGCGGTGTTAATCTTG 59.673 52.381 12.47 0.00 0.00 3.02
2105 2282 1.206371 AGGCTACGCGGTGTTAATCTT 59.794 47.619 12.47 0.00 0.00 2.40
2106 2283 0.822164 AGGCTACGCGGTGTTAATCT 59.178 50.000 12.47 0.00 0.00 2.40
2107 2284 2.497107 TAGGCTACGCGGTGTTAATC 57.503 50.000 12.47 0.00 0.00 1.75
2108 2285 2.965572 TTAGGCTACGCGGTGTTAAT 57.034 45.000 12.47 0.00 0.00 1.40
2109 2286 2.739885 TTTAGGCTACGCGGTGTTAA 57.260 45.000 12.47 0.00 0.00 2.01
2110 2287 2.736192 GTTTTTAGGCTACGCGGTGTTA 59.264 45.455 12.47 0.00 0.00 2.41
2111 2288 1.532437 GTTTTTAGGCTACGCGGTGTT 59.468 47.619 12.47 0.00 0.00 3.32
2112 2289 1.150827 GTTTTTAGGCTACGCGGTGT 58.849 50.000 12.47 0.00 0.00 4.16
2113 2290 0.094046 CGTTTTTAGGCTACGCGGTG 59.906 55.000 12.47 3.22 0.00 4.94
2114 2291 0.319813 ACGTTTTTAGGCTACGCGGT 60.320 50.000 12.47 0.00 38.77 5.68
2115 2292 1.321445 GTACGTTTTTAGGCTACGCGG 59.679 52.381 12.47 0.00 38.77 6.46
2116 2293 1.321445 GGTACGTTTTTAGGCTACGCG 59.679 52.381 3.53 3.53 38.77 6.01
2117 2294 2.600420 GAGGTACGTTTTTAGGCTACGC 59.400 50.000 7.41 0.00 38.77 4.42
2118 2295 4.101235 GAGAGGTACGTTTTTAGGCTACG 58.899 47.826 6.03 6.03 40.85 3.51
2119 2296 5.321959 AGAGAGGTACGTTTTTAGGCTAC 57.678 43.478 0.00 0.00 0.00 3.58
2120 2297 7.467811 CGATTAGAGAGGTACGTTTTTAGGCTA 60.468 40.741 0.00 0.00 0.00 3.93
2121 2298 5.990120 TTAGAGAGGTACGTTTTTAGGCT 57.010 39.130 0.00 0.00 0.00 4.58
2122 2299 5.458126 CGATTAGAGAGGTACGTTTTTAGGC 59.542 44.000 0.00 0.00 0.00 3.93
2123 2300 5.458126 GCGATTAGAGAGGTACGTTTTTAGG 59.542 44.000 0.00 0.00 0.00 2.69
2124 2301 5.458126 GGCGATTAGAGAGGTACGTTTTTAG 59.542 44.000 0.00 0.00 0.00 1.85
2125 2302 5.105797 TGGCGATTAGAGAGGTACGTTTTTA 60.106 40.000 0.00 0.00 0.00 1.52
2126 2303 4.179298 GGCGATTAGAGAGGTACGTTTTT 58.821 43.478 0.00 0.00 0.00 1.94
2127 2304 3.194116 TGGCGATTAGAGAGGTACGTTTT 59.806 43.478 0.00 0.00 0.00 2.43
2128 2305 2.756760 TGGCGATTAGAGAGGTACGTTT 59.243 45.455 0.00 0.00 0.00 3.60
2129 2306 2.098770 GTGGCGATTAGAGAGGTACGTT 59.901 50.000 0.00 0.00 0.00 3.99
2130 2307 1.674962 GTGGCGATTAGAGAGGTACGT 59.325 52.381 0.00 0.00 0.00 3.57
2131 2308 1.674441 TGTGGCGATTAGAGAGGTACG 59.326 52.381 0.00 0.00 0.00 3.67
2132 2309 2.426024 TGTGTGGCGATTAGAGAGGTAC 59.574 50.000 0.00 0.00 0.00 3.34
2133 2310 2.688446 CTGTGTGGCGATTAGAGAGGTA 59.312 50.000 0.00 0.00 0.00 3.08
2134 2311 1.478510 CTGTGTGGCGATTAGAGAGGT 59.521 52.381 0.00 0.00 0.00 3.85
2135 2312 1.751351 TCTGTGTGGCGATTAGAGAGG 59.249 52.381 0.00 0.00 0.00 3.69
2136 2313 3.129462 TCTTCTGTGTGGCGATTAGAGAG 59.871 47.826 0.00 0.00 0.00 3.20
2137 2314 3.089284 TCTTCTGTGTGGCGATTAGAGA 58.911 45.455 0.00 0.00 0.00 3.10
2138 2315 3.182967 GTCTTCTGTGTGGCGATTAGAG 58.817 50.000 0.00 0.00 0.00 2.43
2139 2316 2.094182 GGTCTTCTGTGTGGCGATTAGA 60.094 50.000 0.00 0.00 0.00 2.10
2140 2317 2.271800 GGTCTTCTGTGTGGCGATTAG 58.728 52.381 0.00 0.00 0.00 1.73
2141 2318 1.066430 GGGTCTTCTGTGTGGCGATTA 60.066 52.381 0.00 0.00 0.00 1.75
2142 2319 0.321653 GGGTCTTCTGTGTGGCGATT 60.322 55.000 0.00 0.00 0.00 3.34
2143 2320 1.296715 GGGTCTTCTGTGTGGCGAT 59.703 57.895 0.00 0.00 0.00 4.58
2144 2321 2.741092 GGGTCTTCTGTGTGGCGA 59.259 61.111 0.00 0.00 0.00 5.54
2145 2322 2.507110 ATCGGGTCTTCTGTGTGGCG 62.507 60.000 0.00 0.00 0.00 5.69
2146 2323 0.741221 GATCGGGTCTTCTGTGTGGC 60.741 60.000 0.00 0.00 0.00 5.01
2147 2324 0.108138 GGATCGGGTCTTCTGTGTGG 60.108 60.000 0.00 0.00 0.00 4.17
2148 2325 0.898320 AGGATCGGGTCTTCTGTGTG 59.102 55.000 0.00 0.00 0.00 3.82
2149 2326 2.526888 TAGGATCGGGTCTTCTGTGT 57.473 50.000 0.00 0.00 0.00 3.72
2150 2327 3.243907 GGAATAGGATCGGGTCTTCTGTG 60.244 52.174 0.00 0.00 0.00 3.66
2151 2328 2.966516 GGAATAGGATCGGGTCTTCTGT 59.033 50.000 0.00 0.00 0.00 3.41
2152 2329 2.029828 CGGAATAGGATCGGGTCTTCTG 60.030 54.545 0.00 0.00 0.00 3.02
2153 2330 2.240279 CGGAATAGGATCGGGTCTTCT 58.760 52.381 0.00 0.00 0.00 2.85
2154 2331 1.336980 GCGGAATAGGATCGGGTCTTC 60.337 57.143 0.00 0.00 0.00 2.87
2155 2332 0.680061 GCGGAATAGGATCGGGTCTT 59.320 55.000 0.00 0.00 0.00 3.01
2156 2333 1.524863 CGCGGAATAGGATCGGGTCT 61.525 60.000 0.00 0.00 33.26 3.85
2157 2334 1.080705 CGCGGAATAGGATCGGGTC 60.081 63.158 0.00 0.00 33.26 4.46
2158 2335 3.048602 CGCGGAATAGGATCGGGT 58.951 61.111 0.00 0.00 33.26 5.28
2159 2336 2.432628 GCGCGGAATAGGATCGGG 60.433 66.667 8.83 0.00 39.33 5.14
2160 2337 2.432628 GGCGCGGAATAGGATCGG 60.433 66.667 8.83 0.00 0.00 4.18
2161 2338 0.242825 TAAGGCGCGGAATAGGATCG 59.757 55.000 8.83 0.00 0.00 3.69
2162 2339 2.288886 ACTTAAGGCGCGGAATAGGATC 60.289 50.000 8.83 0.00 0.00 3.36
2163 2340 1.692519 ACTTAAGGCGCGGAATAGGAT 59.307 47.619 8.83 0.00 0.00 3.24
2164 2341 1.117150 ACTTAAGGCGCGGAATAGGA 58.883 50.000 8.83 0.00 0.00 2.94
2165 2342 1.217882 CACTTAAGGCGCGGAATAGG 58.782 55.000 8.83 0.00 0.00 2.57
2166 2343 0.582005 GCACTTAAGGCGCGGAATAG 59.418 55.000 8.83 0.00 0.00 1.73
2167 2344 0.812412 GGCACTTAAGGCGCGGAATA 60.812 55.000 8.83 0.00 0.00 1.75
2168 2345 2.112815 GGCACTTAAGGCGCGGAAT 61.113 57.895 8.83 0.00 0.00 3.01
2169 2346 2.744709 GGCACTTAAGGCGCGGAA 60.745 61.111 8.83 0.00 0.00 4.30
2175 2352 1.135489 GCTTTAACCGGCACTTAAGGC 60.135 52.381 12.36 12.36 31.50 4.35
2176 2353 1.471287 GGCTTTAACCGGCACTTAAGG 59.529 52.381 0.00 0.71 0.00 2.69
2177 2354 2.156098 TGGCTTTAACCGGCACTTAAG 58.844 47.619 0.00 0.00 31.50 1.85
2178 2355 2.273538 TGGCTTTAACCGGCACTTAA 57.726 45.000 0.00 0.00 31.50 1.85
2180 2357 4.911901 TGGCTTTAACCGGCACTT 57.088 50.000 0.00 0.00 31.50 3.16
2183 2360 2.282603 GGGTGGCTTTAACCGGCA 60.283 61.111 0.00 0.00 38.70 5.69
2184 2361 3.066190 GGGGTGGCTTTAACCGGC 61.066 66.667 0.00 0.00 38.70 6.13
2185 2362 2.361992 GGGGGTGGCTTTAACCGG 60.362 66.667 0.00 0.00 38.70 5.28
2216 2393 4.976925 CAGAGCATAGGGGCGGCG 62.977 72.222 0.51 0.51 39.27 6.46
2217 2394 4.632974 CCAGAGCATAGGGGCGGC 62.633 72.222 0.00 0.00 39.27 6.53
2218 2395 3.946201 CCCAGAGCATAGGGGCGG 61.946 72.222 0.00 0.00 41.58 6.13
2219 2396 2.844362 TCCCAGAGCATAGGGGCG 60.844 66.667 7.43 0.00 45.51 6.13
2220 2397 2.832498 GTCCCAGAGCATAGGGGC 59.168 66.667 7.43 2.07 45.51 5.80
2221 2398 2.511452 CCGTCCCAGAGCATAGGGG 61.511 68.421 7.43 2.32 45.51 4.79
2222 2399 3.142393 CCGTCCCAGAGCATAGGG 58.858 66.667 1.20 1.20 46.90 3.53
2223 2400 2.423446 GCCGTCCCAGAGCATAGG 59.577 66.667 0.00 0.00 0.00 2.57
2224 2401 1.227380 GTGCCGTCCCAGAGCATAG 60.227 63.158 0.00 0.00 39.04 2.23
2225 2402 1.337384 ATGTGCCGTCCCAGAGCATA 61.337 55.000 0.00 0.00 39.04 3.14
2226 2403 2.202236 AATGTGCCGTCCCAGAGCAT 62.202 55.000 0.00 0.00 39.04 3.79
2227 2404 2.410322 AAATGTGCCGTCCCAGAGCA 62.410 55.000 0.00 0.00 0.00 4.26
2228 2405 0.392461 TAAATGTGCCGTCCCAGAGC 60.392 55.000 0.00 0.00 0.00 4.09
2229 2406 1.066143 AGTAAATGTGCCGTCCCAGAG 60.066 52.381 0.00 0.00 0.00 3.35
2230 2407 0.981183 AGTAAATGTGCCGTCCCAGA 59.019 50.000 0.00 0.00 0.00 3.86
2231 2408 1.066143 AGAGTAAATGTGCCGTCCCAG 60.066 52.381 0.00 0.00 0.00 4.45
2232 2409 0.981183 AGAGTAAATGTGCCGTCCCA 59.019 50.000 0.00 0.00 0.00 4.37
2233 2410 2.007608 GAAGAGTAAATGTGCCGTCCC 58.992 52.381 0.00 0.00 0.00 4.46
2234 2411 1.659098 CGAAGAGTAAATGTGCCGTCC 59.341 52.381 0.00 0.00 0.00 4.79
2235 2412 2.092211 CACGAAGAGTAAATGTGCCGTC 59.908 50.000 0.00 0.00 0.00 4.79
2236 2413 2.066262 CACGAAGAGTAAATGTGCCGT 58.934 47.619 0.00 0.00 0.00 5.68
2237 2414 2.066262 ACACGAAGAGTAAATGTGCCG 58.934 47.619 0.00 0.00 33.96 5.69
2238 2415 2.806244 ACACACGAAGAGTAAATGTGCC 59.194 45.455 2.71 0.00 43.56 5.01
2239 2416 3.493129 TCACACACGAAGAGTAAATGTGC 59.507 43.478 2.71 0.00 43.56 4.57
2240 2417 4.506288 TGTCACACACGAAGAGTAAATGTG 59.494 41.667 1.29 1.29 44.92 3.21
2241 2418 4.689071 TGTCACACACGAAGAGTAAATGT 58.311 39.130 0.00 0.00 0.00 2.71
2242 2419 5.405269 TCATGTCACACACGAAGAGTAAATG 59.595 40.000 0.00 0.00 0.00 2.32
2243 2420 5.538118 TCATGTCACACACGAAGAGTAAAT 58.462 37.500 0.00 0.00 0.00 1.40
2244 2421 4.939271 TCATGTCACACACGAAGAGTAAA 58.061 39.130 0.00 0.00 0.00 2.01
2245 2422 4.577834 TCATGTCACACACGAAGAGTAA 57.422 40.909 0.00 0.00 0.00 2.24
2246 2423 4.783764 ATCATGTCACACACGAAGAGTA 57.216 40.909 0.00 0.00 0.00 2.59
2247 2424 3.667497 ATCATGTCACACACGAAGAGT 57.333 42.857 0.00 0.00 0.00 3.24
2248 2425 3.059966 CGAATCATGTCACACACGAAGAG 59.940 47.826 0.00 0.00 0.00 2.85
2249 2426 2.986479 CGAATCATGTCACACACGAAGA 59.014 45.455 0.00 0.00 0.00 2.87
2250 2427 2.986479 TCGAATCATGTCACACACGAAG 59.014 45.455 0.00 0.00 0.00 3.79
2251 2428 3.019933 TCGAATCATGTCACACACGAA 57.980 42.857 0.00 0.00 0.00 3.85
2252 2429 2.715737 TCGAATCATGTCACACACGA 57.284 45.000 0.00 0.00 0.00 4.35
2253 2430 2.731451 AGTTCGAATCATGTCACACACG 59.269 45.455 0.00 0.00 0.00 4.49
2254 2431 3.740832 TGAGTTCGAATCATGTCACACAC 59.259 43.478 0.00 0.00 0.00 3.82
2255 2432 3.988819 TGAGTTCGAATCATGTCACACA 58.011 40.909 0.00 0.00 0.00 3.72
2256 2433 4.211164 TGTTGAGTTCGAATCATGTCACAC 59.789 41.667 0.00 1.87 0.00 3.82
2257 2434 4.211164 GTGTTGAGTTCGAATCATGTCACA 59.789 41.667 0.00 5.20 0.00 3.58
2258 2435 4.377431 GGTGTTGAGTTCGAATCATGTCAC 60.377 45.833 0.00 13.64 0.00 3.67
2259 2436 3.745975 GGTGTTGAGTTCGAATCATGTCA 59.254 43.478 0.00 0.00 0.00 3.58
2260 2437 3.745975 TGGTGTTGAGTTCGAATCATGTC 59.254 43.478 0.00 0.00 0.00 3.06
2261 2438 3.498397 GTGGTGTTGAGTTCGAATCATGT 59.502 43.478 0.00 0.00 0.00 3.21
2262 2439 3.120199 GGTGGTGTTGAGTTCGAATCATG 60.120 47.826 0.00 0.00 0.00 3.07
2263 2440 3.074412 GGTGGTGTTGAGTTCGAATCAT 58.926 45.455 0.00 0.00 0.00 2.45
2264 2441 2.489971 GGTGGTGTTGAGTTCGAATCA 58.510 47.619 0.00 3.67 0.00 2.57
2265 2442 1.804748 GGGTGGTGTTGAGTTCGAATC 59.195 52.381 0.00 0.84 0.00 2.52
2266 2443 1.876416 CGGGTGGTGTTGAGTTCGAAT 60.876 52.381 0.00 0.00 0.00 3.34
2267 2444 0.531090 CGGGTGGTGTTGAGTTCGAA 60.531 55.000 0.00 0.00 0.00 3.71
2268 2445 1.068417 CGGGTGGTGTTGAGTTCGA 59.932 57.895 0.00 0.00 0.00 3.71
2269 2446 1.959226 CCGGGTGGTGTTGAGTTCG 60.959 63.158 0.00 0.00 0.00 3.95
2270 2447 4.058797 CCGGGTGGTGTTGAGTTC 57.941 61.111 0.00 0.00 0.00 3.01
2280 2457 2.223845 CGTTTGTACTAAAACCGGGTGG 59.776 50.000 6.32 0.00 36.83 4.61
2281 2458 2.349722 GCGTTTGTACTAAAACCGGGTG 60.350 50.000 6.32 0.00 36.83 4.61
2282 2459 1.872952 GCGTTTGTACTAAAACCGGGT 59.127 47.619 6.32 0.00 36.83 5.28
2283 2460 1.872313 TGCGTTTGTACTAAAACCGGG 59.128 47.619 6.32 0.00 36.83 5.73
2284 2461 3.817148 ATGCGTTTGTACTAAAACCGG 57.183 42.857 0.00 0.00 36.83 5.28
2285 2462 5.564882 GGTTTATGCGTTTGTACTAAAACCG 59.435 40.000 0.00 0.00 36.39 4.44
2286 2463 6.437094 TGGTTTATGCGTTTGTACTAAAACC 58.563 36.000 10.35 10.35 43.05 3.27
2287 2464 7.644945 ACTTGGTTTATGCGTTTGTACTAAAAC 59.355 33.333 0.00 0.00 36.81 2.43
2288 2465 7.705214 ACTTGGTTTATGCGTTTGTACTAAAA 58.295 30.769 0.00 0.00 0.00 1.52
2289 2466 7.261829 ACTTGGTTTATGCGTTTGTACTAAA 57.738 32.000 0.00 0.00 0.00 1.85
2290 2467 6.864360 ACTTGGTTTATGCGTTTGTACTAA 57.136 33.333 0.00 0.00 0.00 2.24
2291 2468 6.293516 CCAACTTGGTTTATGCGTTTGTACTA 60.294 38.462 0.00 0.00 31.35 1.82
2292 2469 5.506649 CCAACTTGGTTTATGCGTTTGTACT 60.507 40.000 0.00 0.00 31.35 2.73
2293 2470 4.677832 CCAACTTGGTTTATGCGTTTGTAC 59.322 41.667 0.00 0.00 31.35 2.90
2294 2471 4.579340 TCCAACTTGGTTTATGCGTTTGTA 59.421 37.500 7.72 0.00 39.03 2.41
2295 2472 3.381908 TCCAACTTGGTTTATGCGTTTGT 59.618 39.130 7.72 0.00 39.03 2.83
2296 2473 3.733727 GTCCAACTTGGTTTATGCGTTTG 59.266 43.478 7.72 0.00 39.03 2.93
2297 2474 3.381908 TGTCCAACTTGGTTTATGCGTTT 59.618 39.130 7.72 0.00 39.03 3.60
2298 2475 2.952978 TGTCCAACTTGGTTTATGCGTT 59.047 40.909 7.72 0.00 39.03 4.84
2299 2476 2.292292 GTGTCCAACTTGGTTTATGCGT 59.708 45.455 7.72 0.00 39.03 5.24
2300 2477 2.552315 AGTGTCCAACTTGGTTTATGCG 59.448 45.455 7.72 0.00 39.03 4.73
2311 2488 5.221244 GGCAAAACAGATTAAGTGTCCAACT 60.221 40.000 0.00 0.00 42.60 3.16
2312 2489 4.982295 GGCAAAACAGATTAAGTGTCCAAC 59.018 41.667 0.00 0.00 0.00 3.77
2313 2490 4.892934 AGGCAAAACAGATTAAGTGTCCAA 59.107 37.500 0.00 0.00 0.00 3.53
2314 2491 4.469657 AGGCAAAACAGATTAAGTGTCCA 58.530 39.130 0.00 0.00 0.00 4.02
2315 2492 5.938125 TCTAGGCAAAACAGATTAAGTGTCC 59.062 40.000 0.00 0.00 0.00 4.02
2316 2493 7.617041 ATCTAGGCAAAACAGATTAAGTGTC 57.383 36.000 0.00 0.00 0.00 3.67
2317 2494 9.167311 CTAATCTAGGCAAAACAGATTAAGTGT 57.833 33.333 0.00 0.00 39.53 3.55
2318 2495 8.616076 CCTAATCTAGGCAAAACAGATTAAGTG 58.384 37.037 0.00 0.00 39.53 3.16
2319 2496 8.738645 CCTAATCTAGGCAAAACAGATTAAGT 57.261 34.615 0.00 0.00 39.53 2.24
2346 2523 8.321650 AGTGTTGCATTTCAAAAAGAGAAAAA 57.678 26.923 0.00 0.00 38.36 1.94
2347 2524 7.903995 AGTGTTGCATTTCAAAAAGAGAAAA 57.096 28.000 0.00 0.00 38.36 2.29
2348 2525 8.994429 TTAGTGTTGCATTTCAAAAAGAGAAA 57.006 26.923 0.00 0.00 39.11 2.52
2349 2526 8.994429 TTTAGTGTTGCATTTCAAAAAGAGAA 57.006 26.923 0.00 0.00 36.26 2.87
2350 2527 8.994429 TTTTAGTGTTGCATTTCAAAAAGAGA 57.006 26.923 0.00 0.00 36.26 3.10
2373 2550 5.020795 AGTAGGGAAACAGTTGTGGTTTTT 58.979 37.500 0.00 0.00 38.50 1.94
2374 2551 4.606210 AGTAGGGAAACAGTTGTGGTTTT 58.394 39.130 0.00 0.00 38.50 2.43
2375 2552 4.245251 AGTAGGGAAACAGTTGTGGTTT 57.755 40.909 0.00 0.00 40.91 3.27
2376 2553 3.945640 AGTAGGGAAACAGTTGTGGTT 57.054 42.857 0.00 0.00 35.77 3.67
2377 2554 3.551846 CAAGTAGGGAAACAGTTGTGGT 58.448 45.455 0.00 0.00 0.00 4.16
2378 2555 2.884639 CCAAGTAGGGAAACAGTTGTGG 59.115 50.000 0.00 0.00 0.00 4.17
2410 2587 7.443272 TCAAAAGAAAAACCGGGTAAACAAAAA 59.557 29.630 6.32 0.00 0.00 1.94
2411 2588 6.932960 TCAAAAGAAAAACCGGGTAAACAAAA 59.067 30.769 6.32 0.00 0.00 2.44
2412 2589 6.461640 TCAAAAGAAAAACCGGGTAAACAAA 58.538 32.000 6.32 0.00 0.00 2.83
2413 2590 6.034161 TCAAAAGAAAAACCGGGTAAACAA 57.966 33.333 6.32 0.00 0.00 2.83
2414 2591 5.656213 TCAAAAGAAAAACCGGGTAAACA 57.344 34.783 6.32 0.00 0.00 2.83
2415 2592 7.542534 AAATCAAAAGAAAAACCGGGTAAAC 57.457 32.000 6.32 0.00 0.00 2.01
2416 2593 8.563123 AAAAATCAAAAGAAAAACCGGGTAAA 57.437 26.923 6.32 0.00 0.00 2.01
2459 2636 9.598517 TCACAAATTAGAAAAGCTCACAAATTT 57.401 25.926 0.00 0.00 0.00 1.82
2460 2637 9.768662 ATCACAAATTAGAAAAGCTCACAAATT 57.231 25.926 0.00 0.00 0.00 1.82
2461 2638 9.768662 AATCACAAATTAGAAAAGCTCACAAAT 57.231 25.926 0.00 0.00 0.00 2.32
2462 2639 9.598517 AAATCACAAATTAGAAAAGCTCACAAA 57.401 25.926 0.00 0.00 0.00 2.83
2463 2640 9.598517 AAAATCACAAATTAGAAAAGCTCACAA 57.401 25.926 0.00 0.00 0.00 3.33
2464 2641 9.598517 AAAAATCACAAATTAGAAAAGCTCACA 57.401 25.926 0.00 0.00 0.00 3.58
2514 2691 9.919416 TCATGGATTTGAAAAATAGTAGATGGA 57.081 29.630 0.00 0.00 0.00 3.41
2529 2706 9.111613 GCATTTGGAAAATATTCATGGATTTGA 57.888 29.630 0.00 0.00 37.29 2.69
2530 2707 8.894731 TGCATTTGGAAAATATTCATGGATTTG 58.105 29.630 0.00 0.00 37.29 2.32
2531 2708 8.895737 GTGCATTTGGAAAATATTCATGGATTT 58.104 29.630 0.00 0.00 37.29 2.17
2532 2709 8.047911 TGTGCATTTGGAAAATATTCATGGATT 58.952 29.630 0.00 0.00 37.29 3.01
2533 2710 7.566569 TGTGCATTTGGAAAATATTCATGGAT 58.433 30.769 0.00 0.00 37.29 3.41
2534 2711 6.944096 TGTGCATTTGGAAAATATTCATGGA 58.056 32.000 0.00 0.00 37.29 3.41
2535 2712 7.010738 GTCTGTGCATTTGGAAAATATTCATGG 59.989 37.037 0.00 0.00 37.29 3.66
2536 2713 7.762615 AGTCTGTGCATTTGGAAAATATTCATG 59.237 33.333 0.00 0.00 37.29 3.07
2537 2714 7.844009 AGTCTGTGCATTTGGAAAATATTCAT 58.156 30.769 0.00 0.00 37.29 2.57
2538 2715 7.177216 AGAGTCTGTGCATTTGGAAAATATTCA 59.823 33.333 0.00 0.00 37.29 2.57
2539 2716 7.542025 AGAGTCTGTGCATTTGGAAAATATTC 58.458 34.615 0.00 0.00 34.66 1.75
2540 2717 7.472334 AGAGTCTGTGCATTTGGAAAATATT 57.528 32.000 0.00 0.00 0.00 1.28
2541 2718 7.472334 AAGAGTCTGTGCATTTGGAAAATAT 57.528 32.000 0.00 0.00 0.00 1.28
2542 2719 6.899393 AAGAGTCTGTGCATTTGGAAAATA 57.101 33.333 0.00 0.00 0.00 1.40
2543 2720 5.796424 AAGAGTCTGTGCATTTGGAAAAT 57.204 34.783 0.00 0.00 0.00 1.82
2544 2721 5.596836 AAAGAGTCTGTGCATTTGGAAAA 57.403 34.783 0.00 0.00 0.00 2.29
2545 2722 5.126869 TGAAAAGAGTCTGTGCATTTGGAAA 59.873 36.000 0.00 0.00 0.00 3.13
2546 2723 4.644234 TGAAAAGAGTCTGTGCATTTGGAA 59.356 37.500 0.00 0.00 0.00 3.53
2547 2724 4.206375 TGAAAAGAGTCTGTGCATTTGGA 58.794 39.130 0.00 0.00 0.00 3.53
2548 2725 4.572985 TGAAAAGAGTCTGTGCATTTGG 57.427 40.909 0.00 0.00 0.00 3.28
2549 2726 5.585390 AGTTGAAAAGAGTCTGTGCATTTG 58.415 37.500 0.00 0.00 0.00 2.32
2550 2727 5.841957 AGTTGAAAAGAGTCTGTGCATTT 57.158 34.783 0.00 0.00 0.00 2.32
2551 2728 5.841957 AAGTTGAAAAGAGTCTGTGCATT 57.158 34.783 0.00 0.00 0.00 3.56
2552 2729 5.841957 AAAGTTGAAAAGAGTCTGTGCAT 57.158 34.783 0.00 0.00 0.00 3.96
2553 2730 5.643379 AAAAGTTGAAAAGAGTCTGTGCA 57.357 34.783 0.00 0.00 0.00 4.57
2554 2731 6.551736 TGTAAAAGTTGAAAAGAGTCTGTGC 58.448 36.000 0.00 0.00 0.00 4.57
2583 2760 6.481644 AGAAAAGTGCGCATATTTTGGAAAAA 59.518 30.769 29.50 0.00 0.00 1.94
2584 2761 5.988561 AGAAAAGTGCGCATATTTTGGAAAA 59.011 32.000 29.50 0.00 0.00 2.29
2585 2762 5.537188 AGAAAAGTGCGCATATTTTGGAAA 58.463 33.333 29.50 0.00 0.00 3.13
2586 2763 5.132897 AGAAAAGTGCGCATATTTTGGAA 57.867 34.783 29.50 0.00 0.00 3.53
2587 2764 4.380444 GGAGAAAAGTGCGCATATTTTGGA 60.380 41.667 29.50 0.00 0.00 3.53
2588 2765 3.859386 GGAGAAAAGTGCGCATATTTTGG 59.141 43.478 29.50 0.00 0.00 3.28
2589 2766 3.859386 GGGAGAAAAGTGCGCATATTTTG 59.141 43.478 29.50 0.00 0.00 2.44
2590 2767 3.509575 TGGGAGAAAAGTGCGCATATTTT 59.490 39.130 26.56 26.56 0.00 1.82
2591 2768 3.088532 TGGGAGAAAAGTGCGCATATTT 58.911 40.909 15.91 18.08 0.00 1.40
2592 2769 2.722094 TGGGAGAAAAGTGCGCATATT 58.278 42.857 15.91 9.47 0.00 1.28
2593 2770 2.418368 TGGGAGAAAAGTGCGCATAT 57.582 45.000 15.91 1.88 0.00 1.78
2594 2771 2.192664 TTGGGAGAAAAGTGCGCATA 57.807 45.000 15.91 0.00 0.00 3.14
2595 2772 1.549203 ATTGGGAGAAAAGTGCGCAT 58.451 45.000 15.91 0.00 0.00 4.73
2596 2773 1.327303 AATTGGGAGAAAAGTGCGCA 58.673 45.000 5.66 5.66 0.00 6.09
2597 2774 2.438868 AAATTGGGAGAAAAGTGCGC 57.561 45.000 0.00 0.00 0.00 6.09
2598 2775 4.367450 TCAAAAATTGGGAGAAAAGTGCG 58.633 39.130 0.00 0.00 0.00 5.34
2599 2776 6.866010 ATTCAAAAATTGGGAGAAAAGTGC 57.134 33.333 0.00 0.00 0.00 4.40
2633 2810 9.790344 TCATGGGTTTAAAACAATTCAATGATT 57.210 25.926 5.45 0.00 0.00 2.57
2634 2811 9.790344 TTCATGGGTTTAAAACAATTCAATGAT 57.210 25.926 5.45 0.00 0.00 2.45
2635 2812 9.270640 CTTCATGGGTTTAAAACAATTCAATGA 57.729 29.630 5.45 2.04 0.00 2.57
2636 2813 9.054922 ACTTCATGGGTTTAAAACAATTCAATG 57.945 29.630 5.45 0.00 0.00 2.82
2637 2814 9.625747 AACTTCATGGGTTTAAAACAATTCAAT 57.374 25.926 5.45 0.00 0.00 2.57
2638 2815 9.454859 AAACTTCATGGGTTTAAAACAATTCAA 57.545 25.926 5.45 0.00 35.48 2.69
2639 2816 9.454859 AAAACTTCATGGGTTTAAAACAATTCA 57.545 25.926 5.45 0.00 36.09 2.57
2651 2828 9.454859 TGTTTTTGAAATAAAACTTCATGGGTT 57.545 25.926 11.74 0.00 44.45 4.11
2652 2829 8.888716 GTGTTTTTGAAATAAAACTTCATGGGT 58.111 29.630 11.74 0.00 44.45 4.51
2653 2830 8.341903 GGTGTTTTTGAAATAAAACTTCATGGG 58.658 33.333 11.74 0.00 44.45 4.00
2654 2831 8.887717 TGGTGTTTTTGAAATAAAACTTCATGG 58.112 29.630 11.74 0.00 44.45 3.66
2657 2834 9.658799 TCATGGTGTTTTTGAAATAAAACTTCA 57.341 25.926 11.74 10.10 44.45 3.02
2660 2837 9.442047 TGTTCATGGTGTTTTTGAAATAAAACT 57.558 25.926 11.74 0.00 44.45 2.66
2666 2843 8.954350 TGAAAATGTTCATGGTGTTTTTGAAAT 58.046 25.926 0.00 0.00 38.88 2.17
2667 2844 8.327941 TGAAAATGTTCATGGTGTTTTTGAAA 57.672 26.923 0.00 0.00 38.88 2.69
2668 2845 7.912056 TGAAAATGTTCATGGTGTTTTTGAA 57.088 28.000 0.00 0.00 38.88 2.69
2669 2846 7.605691 AGTTGAAAATGTTCATGGTGTTTTTGA 59.394 29.630 0.00 0.00 43.29 2.69
2670 2847 7.750769 AGTTGAAAATGTTCATGGTGTTTTTG 58.249 30.769 0.00 0.00 43.29 2.44
2671 2848 7.920160 AGTTGAAAATGTTCATGGTGTTTTT 57.080 28.000 0.00 0.00 43.29 1.94
2672 2849 7.605691 TGAAGTTGAAAATGTTCATGGTGTTTT 59.394 29.630 0.00 0.00 43.29 2.43
2673 2850 7.102346 TGAAGTTGAAAATGTTCATGGTGTTT 58.898 30.769 0.00 0.00 43.29 2.83
2674 2851 6.638610 TGAAGTTGAAAATGTTCATGGTGTT 58.361 32.000 0.00 0.00 43.29 3.32
2675 2852 6.219417 TGAAGTTGAAAATGTTCATGGTGT 57.781 33.333 0.00 0.00 43.29 4.16
2676 2853 8.815141 TTATGAAGTTGAAAATGTTCATGGTG 57.185 30.769 0.00 0.00 43.29 4.17
2677 2854 9.260002 GTTTATGAAGTTGAAAATGTTCATGGT 57.740 29.630 0.00 0.00 43.29 3.55
2678 2855 9.480053 AGTTTATGAAGTTGAAAATGTTCATGG 57.520 29.630 0.00 0.00 43.29 3.66
2708 2885 8.738554 CGAAAAAGTTCACGATATTTGTTTTCA 58.261 29.630 0.00 0.00 33.94 2.69
2709 2886 8.949953 TCGAAAAAGTTCACGATATTTGTTTTC 58.050 29.630 0.00 0.00 32.89 2.29
2710 2887 8.844441 TCGAAAAAGTTCACGATATTTGTTTT 57.156 26.923 0.00 0.00 32.89 2.43
2711 2888 8.844441 TTCGAAAAAGTTCACGATATTTGTTT 57.156 26.923 0.00 0.00 34.85 2.83
2712 2889 9.458374 AATTCGAAAAAGTTCACGATATTTGTT 57.542 25.926 0.00 0.00 34.85 2.83
2713 2890 9.113876 GAATTCGAAAAAGTTCACGATATTTGT 57.886 29.630 0.00 0.00 34.85 2.83
2714 2891 8.297222 CGAATTCGAAAAAGTTCACGATATTTG 58.703 33.333 23.29 0.00 43.02 2.32
2715 2892 8.013378 ACGAATTCGAAAAAGTTCACGATATTT 58.987 29.630 33.05 1.60 43.02 1.40
2716 2893 7.515643 ACGAATTCGAAAAAGTTCACGATATT 58.484 30.769 33.05 1.94 43.02 1.28
2717 2894 7.057149 ACGAATTCGAAAAAGTTCACGATAT 57.943 32.000 33.05 2.30 43.02 1.63
2718 2895 6.456447 ACGAATTCGAAAAAGTTCACGATA 57.544 33.333 33.05 0.00 43.02 2.92
2719 2896 5.338614 ACGAATTCGAAAAAGTTCACGAT 57.661 34.783 33.05 3.39 43.02 3.73
2720 2897 4.782252 ACGAATTCGAAAAAGTTCACGA 57.218 36.364 33.05 0.00 43.02 4.35
2721 2898 6.408611 TGTTTACGAATTCGAAAAAGTTCACG 59.591 34.615 33.05 3.79 43.02 4.35
2722 2899 7.653523 TGTTTACGAATTCGAAAAAGTTCAC 57.346 32.000 33.05 18.86 43.02 3.18
2723 2900 8.844441 AATGTTTACGAATTCGAAAAAGTTCA 57.156 26.923 33.05 22.43 43.02 3.18
2725 2902 9.894439 CAAAATGTTTACGAATTCGAAAAAGTT 57.106 25.926 33.05 22.53 43.02 2.66
2726 2903 9.078753 ACAAAATGTTTACGAATTCGAAAAAGT 57.921 25.926 33.05 18.82 43.02 2.66
2748 2925 9.672673 TGGAAAACAATTCAGGATTTTTACAAA 57.327 25.926 0.00 0.00 0.00 2.83
2749 2926 9.672673 TTGGAAAACAATTCAGGATTTTTACAA 57.327 25.926 0.00 0.00 30.91 2.41
2750 2927 9.323985 CTTGGAAAACAATTCAGGATTTTTACA 57.676 29.630 0.00 0.00 38.65 2.41
2751 2928 9.541143 TCTTGGAAAACAATTCAGGATTTTTAC 57.459 29.630 0.00 0.00 38.65 2.01
2752 2929 9.541143 GTCTTGGAAAACAATTCAGGATTTTTA 57.459 29.630 0.00 0.00 38.65 1.52
2753 2930 8.437360 GTCTTGGAAAACAATTCAGGATTTTT 57.563 30.769 0.00 0.00 38.65 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.