Multiple sequence alignment - TraesCS3D01G037200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G037200 chr3D 100.000 7406 0 0 1 7406 13416381 13423786 0.000000e+00 13677.0
1 TraesCS3D01G037200 chr3D 93.220 118 7 1 4344 4461 13424210 13424326 9.880000e-39 172.0
2 TraesCS3D01G037200 chr3D 95.122 41 0 1 1301 1341 13417632 13417670 6.200000e-06 63.9
3 TraesCS3D01G037200 chr3D 95.122 41 0 1 1252 1290 13417681 13417721 6.200000e-06 63.9
4 TraesCS3D01G037200 chr3B 90.211 4219 241 83 121 4239 19386899 19391045 0.000000e+00 5345.0
5 TraesCS3D01G037200 chr3B 91.739 1041 61 13 5634 6660 19392522 19393551 0.000000e+00 1423.0
6 TraesCS3D01G037200 chr3B 97.242 689 18 1 4236 4924 19391226 19391913 0.000000e+00 1166.0
7 TraesCS3D01G037200 chr3B 86.820 607 56 17 4977 5571 19391926 19392520 0.000000e+00 656.0
8 TraesCS3D01G037200 chr3A 94.461 2329 103 19 4236 6560 23653467 23651161 0.000000e+00 3563.0
9 TraesCS3D01G037200 chr3A 91.403 2245 134 25 1321 3534 23656597 23654381 0.000000e+00 3022.0
10 TraesCS3D01G037200 chr3A 86.328 1141 80 32 159 1242 23657722 23656601 0.000000e+00 1173.0
11 TraesCS3D01G037200 chr3A 95.702 698 21 5 3544 4239 23654339 23653649 0.000000e+00 1114.0
12 TraesCS3D01G037200 chr3A 84.286 700 66 24 1301 1993 28630412 28631074 1.740000e-180 643.0
13 TraesCS3D01G037200 chr3A 84.143 700 67 24 1301 1993 28746180 28746842 8.100000e-179 638.0
14 TraesCS3D01G037200 chr3A 84.000 700 68 25 1301 1993 28740337 28740999 3.770000e-177 632.0
15 TraesCS3D01G037200 chr3A 83.857 700 69 14 1301 1993 28674289 28674951 1.750000e-175 627.0
16 TraesCS3D01G037200 chr3A 75.717 523 90 20 6556 7055 23651023 23650515 2.080000e-55 228.0
17 TraesCS3D01G037200 chr3A 85.366 205 19 6 1094 1289 28630247 28630449 1.260000e-47 202.0
18 TraesCS3D01G037200 chr3A 84.804 204 22 5 1094 1289 28740172 28740374 5.860000e-46 196.0
19 TraesCS3D01G037200 chr3A 85.492 193 21 6 7105 7294 23645116 23644928 2.110000e-45 195.0
20 TraesCS3D01G037200 chr3A 84.314 204 23 4 1094 1289 28746015 28746217 2.730000e-44 191.0
21 TraesCS3D01G037200 chr3A 88.034 117 8 3 4325 4437 23649726 23649612 4.660000e-27 134.0
22 TraesCS3D01G037200 chr3A 87.879 66 8 0 12 77 23657828 23657763 2.220000e-10 78.7
23 TraesCS3D01G037200 chr2B 84.429 700 65 19 1301 1993 777640742 777640080 0.000000e+00 649.0
24 TraesCS3D01G037200 chr2B 85.366 205 19 6 1094 1289 8517027 8517229 1.260000e-47 202.0
25 TraesCS3D01G037200 chr2B 88.816 152 16 1 1094 1245 777640907 777640757 1.270000e-42 185.0
26 TraesCS3D01G037200 chr1A 84.120 699 67 24 1302 1993 560825067 560825728 2.910000e-178 636.0
27 TraesCS3D01G037200 chr1A 84.804 204 22 4 1094 1289 560824901 560825103 5.860000e-46 196.0
28 TraesCS3D01G037200 chr1A 92.958 71 5 0 3068 3138 384334797 384334727 3.660000e-18 104.0
29 TraesCS3D01G037200 chr5B 84.817 573 63 13 1422 1989 489424818 489425371 8.400000e-154 555.0
30 TraesCS3D01G037200 chr5B 91.111 45 4 0 2839 2883 375419647 375419691 2.230000e-05 62.1
31 TraesCS3D01G037200 chr2D 84.406 404 51 7 1602 1999 155541880 155541483 3.240000e-103 387.0
32 TraesCS3D01G037200 chr2D 85.294 204 21 4 1094 1289 155549607 155549405 1.260000e-47 202.0
33 TraesCS3D01G037200 chr1D 92.958 71 5 0 3068 3138 305589248 305589178 3.660000e-18 104.0
34 TraesCS3D01G037200 chr1B 92.958 71 5 0 3068 3138 412898590 412898520 3.660000e-18 104.0
35 TraesCS3D01G037200 chr6A 78.030 132 26 3 2833 2962 411093262 411093392 6.160000e-11 80.5
36 TraesCS3D01G037200 chr6B 91.071 56 5 0 2555 2610 716824708 716824763 7.970000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G037200 chr3D 13416381 13423786 7405 False 13677.000000 13677 100.000000 1 7406 1 chr3D.!!$F1 7405
1 TraesCS3D01G037200 chr3B 19386899 19393551 6652 False 2147.500000 5345 91.503000 121 6660 4 chr3B.!!$F1 6539
2 TraesCS3D01G037200 chr3A 23649612 23657828 8216 True 1330.385714 3563 88.503429 12 7055 7 chr3A.!!$R2 7043
3 TraesCS3D01G037200 chr3A 28674289 28674951 662 False 627.000000 627 83.857000 1301 1993 1 chr3A.!!$F1 692
4 TraesCS3D01G037200 chr3A 28630247 28631074 827 False 422.500000 643 84.826000 1094 1993 2 chr3A.!!$F2 899
5 TraesCS3D01G037200 chr3A 28746015 28746842 827 False 414.500000 638 84.228500 1094 1993 2 chr3A.!!$F4 899
6 TraesCS3D01G037200 chr3A 28740172 28740999 827 False 414.000000 632 84.402000 1094 1993 2 chr3A.!!$F3 899
7 TraesCS3D01G037200 chr2B 777640080 777640907 827 True 417.000000 649 86.622500 1094 1993 2 chr2B.!!$R1 899
8 TraesCS3D01G037200 chr1A 560824901 560825728 827 False 416.000000 636 84.462000 1094 1993 2 chr1A.!!$F1 899
9 TraesCS3D01G037200 chr5B 489424818 489425371 553 False 555.000000 555 84.817000 1422 1989 1 chr5B.!!$F2 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 80 0.103937 GAGGCTCCGTCTCAATCTGG 59.896 60.000 2.15 0.00 34.02 3.86 F
529 575 0.179018 GGGATCAATTGCCGTAGCCT 60.179 55.000 0.00 0.00 38.69 4.58 F
577 626 0.906066 TGGTAATTGCTAGCACGGGA 59.094 50.000 19.17 2.40 33.04 5.14 F
925 1001 1.048160 TCTGCCTGTCAGTCACCACA 61.048 55.000 0.00 0.00 43.32 4.17 F
2066 2256 1.562783 AAGTAGCTGACCTGGGTCTC 58.437 55.000 18.92 11.48 44.80 3.36 F
3376 3586 1.280421 ACTCCAGAAGTCAGGATTGGC 59.720 52.381 0.00 0.00 30.02 4.52 F
3459 3669 2.818169 GGCTGGTGGGTCTGTGTGA 61.818 63.158 0.00 0.00 0.00 3.58 F
4929 5358 2.105477 ACAGTCTGAAGGTGTGCATTCT 59.895 45.455 6.91 0.00 36.47 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1728 1900 0.107410 TGTTCAACCACTCGCAAGGT 60.107 50.000 0.00 0.0 40.61 3.50 R
2171 2361 1.212935 CCTGGGGATGTAAGACCAAGG 59.787 57.143 0.00 0.0 31.63 3.61 R
2217 2407 2.180159 TAGGTGGGCAAGAACCGAGC 62.180 60.000 0.00 0.0 41.61 5.03 R
2807 3005 1.600485 AGACAAAAACAGGTAACGGCG 59.400 47.619 4.80 4.8 46.39 6.46 R
3427 3637 0.037303 CCAGCCATGTTGAGACACCT 59.963 55.000 0.00 0.0 38.91 4.00 R
4657 5086 1.202054 GCCGTACGAGAGAGTGTCTTC 60.202 57.143 18.76 0.0 34.71 2.87 R
4969 5398 6.067217 AGGATCCTTAGCAAAATGTACTGT 57.933 37.500 9.02 0.0 0.00 3.55 R
6705 7314 0.032540 CAGTTGCCAAAAGCCTGGTC 59.967 55.000 0.00 0.0 42.71 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 0.536460 CTTATTATTGCCCCGGCGGT 60.536 55.000 26.32 8.37 45.51 5.68
64 65 3.967335 CGGGAGATCGGTCGAGGC 61.967 72.222 0.00 0.00 0.00 4.70
66 67 2.557372 GGGAGATCGGTCGAGGCTC 61.557 68.421 3.87 3.87 0.00 4.70
68 69 2.899044 GAGATCGGTCGAGGCTCCG 61.899 68.421 9.32 7.93 46.93 4.63
70 71 3.183776 GATCGGTCGAGGCTCCGTC 62.184 68.421 9.32 4.72 45.88 4.79
77 78 0.394488 TCGAGGCTCCGTCTCAATCT 60.394 55.000 9.32 0.00 33.34 2.40
79 80 0.103937 GAGGCTCCGTCTCAATCTGG 59.896 60.000 2.15 0.00 34.02 3.86
82 83 1.144936 CTCCGTCTCAATCTGGGGC 59.855 63.158 0.00 0.00 0.00 5.80
83 84 2.190578 CCGTCTCAATCTGGGGCC 59.809 66.667 0.00 0.00 0.00 5.80
84 85 2.190578 CGTCTCAATCTGGGGCCC 59.809 66.667 18.17 18.17 0.00 5.80
85 86 2.370445 CGTCTCAATCTGGGGCCCT 61.370 63.158 25.93 0.00 0.00 5.19
86 87 1.529309 GTCTCAATCTGGGGCCCTC 59.471 63.158 25.93 12.89 0.00 4.30
87 88 1.694169 TCTCAATCTGGGGCCCTCC 60.694 63.158 25.93 6.38 0.00 4.30
101 102 4.824515 CTCCCCTCCGCTCGTCCT 62.825 72.222 0.00 0.00 0.00 3.85
102 103 4.816984 TCCCCTCCGCTCGTCCTC 62.817 72.222 0.00 0.00 0.00 3.71
104 105 4.824515 CCCTCCGCTCGTCCTCCT 62.825 72.222 0.00 0.00 0.00 3.69
105 106 3.213402 CCTCCGCTCGTCCTCCTC 61.213 72.222 0.00 0.00 0.00 3.71
106 107 3.213402 CTCCGCTCGTCCTCCTCC 61.213 72.222 0.00 0.00 0.00 4.30
107 108 3.707640 CTCCGCTCGTCCTCCTCCT 62.708 68.421 0.00 0.00 0.00 3.69
108 109 3.213402 CCGCTCGTCCTCCTCCTC 61.213 72.222 0.00 0.00 0.00 3.71
109 110 3.213402 CGCTCGTCCTCCTCCTCC 61.213 72.222 0.00 0.00 0.00 4.30
110 111 2.277404 GCTCGTCCTCCTCCTCCT 59.723 66.667 0.00 0.00 0.00 3.69
111 112 1.826487 GCTCGTCCTCCTCCTCCTC 60.826 68.421 0.00 0.00 0.00 3.71
112 113 1.152839 CTCGTCCTCCTCCTCCTCC 60.153 68.421 0.00 0.00 0.00 4.30
113 114 1.619975 TCGTCCTCCTCCTCCTCCT 60.620 63.158 0.00 0.00 0.00 3.69
114 115 1.152839 CGTCCTCCTCCTCCTCCTC 60.153 68.421 0.00 0.00 0.00 3.71
115 116 1.231928 GTCCTCCTCCTCCTCCTCC 59.768 68.421 0.00 0.00 0.00 4.30
116 117 1.087725 TCCTCCTCCTCCTCCTCCT 59.912 63.158 0.00 0.00 0.00 3.69
117 118 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
118 119 1.150536 CTCCTCCTCCTCCTCCTCG 59.849 68.421 0.00 0.00 0.00 4.63
119 120 1.619975 TCCTCCTCCTCCTCCTCGT 60.620 63.158 0.00 0.00 0.00 4.18
120 121 1.152839 CCTCCTCCTCCTCCTCGTC 60.153 68.421 0.00 0.00 0.00 4.20
121 122 1.525077 CTCCTCCTCCTCCTCGTCG 60.525 68.421 0.00 0.00 0.00 5.12
122 123 2.517402 CCTCCTCCTCCTCGTCGG 60.517 72.222 0.00 0.00 0.00 4.79
123 124 2.590645 CTCCTCCTCCTCGTCGGA 59.409 66.667 0.00 0.00 40.30 4.55
132 133 3.441290 CTCGTCGGAGGCCTTCGT 61.441 66.667 32.23 0.00 36.61 3.85
140 141 4.699522 AGGCCTTCGTGCGTTCCC 62.700 66.667 0.00 0.00 0.00 3.97
158 160 4.410400 GGACCGGTTGGCCTCTGG 62.410 72.222 9.42 19.87 39.70 3.86
246 259 1.745264 CTCCTCCTCCTCGCATTCC 59.255 63.158 0.00 0.00 0.00 3.01
259 284 1.872952 CGCATTCCTGCCGATTATTCA 59.127 47.619 0.00 0.00 46.07 2.57
265 290 0.937304 CTGCCGATTATTCACACCCG 59.063 55.000 0.00 0.00 0.00 5.28
269 294 2.616842 GCCGATTATTCACACCCGATTT 59.383 45.455 0.00 0.00 0.00 2.17
283 308 1.202313 CCGATTTCCGACTCCTCAGTC 60.202 57.143 0.00 0.00 45.19 3.51
297 322 2.363680 CCTCAGTCCTAGATTGCGATGT 59.636 50.000 0.00 0.00 0.00 3.06
298 323 3.551863 CCTCAGTCCTAGATTGCGATGTC 60.552 52.174 0.00 0.00 0.00 3.06
299 324 3.023832 TCAGTCCTAGATTGCGATGTCA 58.976 45.455 0.00 0.00 0.00 3.58
316 342 2.162681 GTCACCCAATTCTGACCAAGG 58.837 52.381 0.00 0.00 32.15 3.61
338 364 1.207791 CTGTGCCATAGACTTCCCCT 58.792 55.000 0.00 0.00 0.00 4.79
345 376 3.502356 CCATAGACTTCCCCTCTCTACC 58.498 54.545 0.00 0.00 0.00 3.18
449 480 2.205074 CCTAGCACGACACATGGATTC 58.795 52.381 0.00 0.00 0.00 2.52
453 484 3.722147 AGCACGACACATGGATTCTATC 58.278 45.455 0.00 0.00 0.00 2.08
455 486 3.492383 GCACGACACATGGATTCTATCTG 59.508 47.826 0.00 0.00 0.00 2.90
473 518 1.065410 TGCAAGGGGGAAAGGACAGA 61.065 55.000 0.00 0.00 0.00 3.41
475 520 1.272704 GCAAGGGGGAAAGGACAGATT 60.273 52.381 0.00 0.00 0.00 2.40
477 522 3.621558 CAAGGGGGAAAGGACAGATTAC 58.378 50.000 0.00 0.00 0.00 1.89
489 534 5.983540 AGGACAGATTACACTGAAAGATCC 58.016 41.667 0.00 0.00 40.63 3.36
498 543 5.762179 ACACTGAAAGATCCCATAAGTGA 57.238 39.130 15.87 0.00 37.56 3.41
499 544 6.126863 ACACTGAAAGATCCCATAAGTGAA 57.873 37.500 15.87 0.00 37.56 3.18
500 545 6.542821 ACACTGAAAGATCCCATAAGTGAAA 58.457 36.000 15.87 0.00 37.56 2.69
501 546 6.656693 ACACTGAAAGATCCCATAAGTGAAAG 59.343 38.462 15.87 0.00 37.56 2.62
502 547 6.656693 CACTGAAAGATCCCATAAGTGAAAGT 59.343 38.462 7.15 0.00 36.51 2.66
508 554 3.669939 CCCATAAGTGAAAGTGGGGAT 57.330 47.619 1.29 0.00 46.08 3.85
510 556 3.290710 CCATAAGTGAAAGTGGGGATGG 58.709 50.000 0.00 0.00 0.00 3.51
511 557 3.290710 CATAAGTGAAAGTGGGGATGGG 58.709 50.000 0.00 0.00 0.00 4.00
514 560 0.631212 GTGAAAGTGGGGATGGGGAT 59.369 55.000 0.00 0.00 0.00 3.85
529 575 0.179018 GGGATCAATTGCCGTAGCCT 60.179 55.000 0.00 0.00 38.69 4.58
531 577 2.143925 GGATCAATTGCCGTAGCCTAC 58.856 52.381 0.00 0.00 38.69 3.18
534 580 1.553248 TCAATTGCCGTAGCCTACAGT 59.447 47.619 0.00 0.00 38.69 3.55
535 581 2.761767 TCAATTGCCGTAGCCTACAGTA 59.238 45.455 0.00 0.00 38.69 2.74
536 582 3.123804 CAATTGCCGTAGCCTACAGTAG 58.876 50.000 2.30 0.00 38.69 2.57
537 583 1.843368 TTGCCGTAGCCTACAGTAGT 58.157 50.000 6.84 0.00 38.69 2.73
539 585 3.219176 TGCCGTAGCCTACAGTAGTAT 57.781 47.619 6.84 0.00 38.69 2.12
542 591 3.126686 GCCGTAGCCTACAGTAGTATAGC 59.873 52.174 6.84 2.95 32.45 2.97
560 609 2.731572 AGCAGGTCAATTTCTCCATGG 58.268 47.619 4.97 4.97 0.00 3.66
569 618 6.321181 GGTCAATTTCTCCATGGTAATTGCTA 59.679 38.462 26.82 17.23 37.70 3.49
571 620 6.039717 TCAATTTCTCCATGGTAATTGCTAGC 59.960 38.462 26.82 8.10 37.70 3.42
575 624 1.603802 CCATGGTAATTGCTAGCACGG 59.396 52.381 19.17 4.21 40.72 4.94
577 626 0.906066 TGGTAATTGCTAGCACGGGA 59.094 50.000 19.17 2.40 33.04 5.14
595 644 3.489738 CGGGACATGGATTTCAATTCAGC 60.490 47.826 0.00 0.00 0.00 4.26
596 645 3.448301 GGGACATGGATTTCAATTCAGCA 59.552 43.478 0.00 0.00 0.00 4.41
656 709 3.435169 GGGAGAAAGGACAGGTGAAACTT 60.435 47.826 0.00 0.00 36.74 2.66
714 770 4.591072 AGCAGTTCTAGGACCTAATCATCC 59.409 45.833 2.08 0.00 34.98 3.51
715 771 4.262678 GCAGTTCTAGGACCTAATCATCCC 60.263 50.000 2.08 0.00 35.38 3.85
716 772 4.901849 CAGTTCTAGGACCTAATCATCCCA 59.098 45.833 2.08 0.00 35.38 4.37
717 773 5.545723 CAGTTCTAGGACCTAATCATCCCAT 59.454 44.000 2.08 0.00 35.38 4.00
718 774 5.545723 AGTTCTAGGACCTAATCATCCCATG 59.454 44.000 2.08 0.00 35.38 3.66
719 775 3.840666 TCTAGGACCTAATCATCCCATGC 59.159 47.826 2.08 0.00 35.38 4.06
720 776 2.711174 AGGACCTAATCATCCCATGCT 58.289 47.619 0.00 0.00 35.38 3.79
721 777 2.374504 AGGACCTAATCATCCCATGCTG 59.625 50.000 0.00 0.00 35.38 4.41
722 778 2.157738 GACCTAATCATCCCATGCTGC 58.842 52.381 0.00 0.00 0.00 5.25
788 859 3.605749 ATTGCAGGTGGACGGACGG 62.606 63.158 0.00 0.00 0.00 4.79
790 861 4.736896 GCAGGTGGACGGACGGAC 62.737 72.222 0.00 0.00 0.00 4.79
791 862 3.299977 CAGGTGGACGGACGGACA 61.300 66.667 0.00 0.00 0.00 4.02
793 864 4.065281 GGTGGACGGACGGACAGG 62.065 72.222 0.00 0.00 0.00 4.00
794 865 3.300765 GTGGACGGACGGACAGGT 61.301 66.667 0.00 0.00 0.00 4.00
836 911 1.612950 TGGTGCGTGCAAAAAGATGAT 59.387 42.857 0.00 0.00 0.00 2.45
837 912 1.987770 GGTGCGTGCAAAAAGATGATG 59.012 47.619 0.00 0.00 0.00 3.07
838 913 2.351641 GGTGCGTGCAAAAAGATGATGA 60.352 45.455 0.00 0.00 0.00 2.92
925 1001 1.048160 TCTGCCTGTCAGTCACCACA 61.048 55.000 0.00 0.00 43.32 4.17
1207 1299 5.552870 TCAGGTAGCTCTTGTTTCTTTCT 57.447 39.130 0.00 0.00 0.00 2.52
1211 1303 4.932799 GGTAGCTCTTGTTTCTTTCTCCTC 59.067 45.833 0.00 0.00 0.00 3.71
1260 1353 7.953158 TCATAGCTCACATGATACTTTTAGC 57.047 36.000 0.00 0.00 0.00 3.09
1261 1354 7.500141 TCATAGCTCACATGATACTTTTAGCA 58.500 34.615 0.00 0.00 0.00 3.49
1262 1355 8.152898 TCATAGCTCACATGATACTTTTAGCAT 58.847 33.333 0.00 0.00 34.53 3.79
1263 1356 9.428097 CATAGCTCACATGATACTTTTAGCATA 57.572 33.333 0.00 0.00 32.38 3.14
1264 1357 7.959689 AGCTCACATGATACTTTTAGCATAG 57.040 36.000 0.00 0.00 32.38 2.23
1265 1358 6.426328 AGCTCACATGATACTTTTAGCATAGC 59.574 38.462 0.00 0.00 35.08 2.97
1266 1359 6.203530 GCTCACATGATACTTTTAGCATAGCA 59.796 38.462 0.00 0.00 35.02 3.49
1267 1360 7.094890 GCTCACATGATACTTTTAGCATAGCAT 60.095 37.037 0.00 0.00 35.02 3.79
1268 1361 8.091385 TCACATGATACTTTTAGCATAGCATG 57.909 34.615 0.00 7.07 44.45 4.06
1277 1370 7.820648 ACTTTTAGCATAGCATGTATAATGCC 58.179 34.615 15.40 0.00 44.57 4.40
1278 1371 7.667219 ACTTTTAGCATAGCATGTATAATGCCT 59.333 33.333 15.40 0.33 44.57 4.75
1279 1372 6.990341 TTAGCATAGCATGTATAATGCCTG 57.010 37.500 15.40 6.44 44.57 4.85
1280 1373 4.267536 AGCATAGCATGTATAATGCCTGG 58.732 43.478 15.40 0.00 44.57 4.45
1281 1374 4.012374 GCATAGCATGTATAATGCCTGGT 58.988 43.478 6.69 0.00 45.59 4.00
1282 1375 4.095483 GCATAGCATGTATAATGCCTGGTC 59.905 45.833 6.69 0.00 45.59 4.02
1283 1376 5.494724 CATAGCATGTATAATGCCTGGTCT 58.505 41.667 6.69 0.00 45.59 3.85
1284 1377 4.443978 AGCATGTATAATGCCTGGTCTT 57.556 40.909 6.69 0.00 45.59 3.01
1285 1378 4.139786 AGCATGTATAATGCCTGGTCTTG 58.860 43.478 6.69 0.00 45.59 3.02
1286 1379 3.254166 GCATGTATAATGCCTGGTCTTGG 59.746 47.826 0.00 0.00 39.01 3.61
1287 1380 3.576078 TGTATAATGCCTGGTCTTGGG 57.424 47.619 0.00 0.00 0.00 4.12
1316 1409 8.034058 CCATTCAGGTACTTTTAGCATATAGC 57.966 38.462 0.00 0.00 40.17 2.97
1317 1410 7.661437 CCATTCAGGTACTTTTAGCATATAGCA 59.339 37.037 0.00 0.00 42.31 3.49
1319 1412 8.607441 TTCAGGTACTTTTAGCATATAGCATG 57.393 34.615 0.00 0.00 42.31 4.06
1357 1511 3.823873 TGGGCGTTCACATGATACTTTTT 59.176 39.130 0.00 0.00 0.00 1.94
1387 1548 6.045318 TCTGAAAGAGAAACAGAGTGTGAAG 58.955 40.000 0.00 0.00 38.67 3.02
1388 1549 5.734720 TGAAAGAGAAACAGAGTGTGAAGT 58.265 37.500 0.00 0.00 0.00 3.01
1389 1550 5.582269 TGAAAGAGAAACAGAGTGTGAAGTG 59.418 40.000 0.00 0.00 0.00 3.16
1390 1551 4.744795 AGAGAAACAGAGTGTGAAGTGT 57.255 40.909 0.00 0.00 0.00 3.55
1391 1552 4.437239 AGAGAAACAGAGTGTGAAGTGTG 58.563 43.478 0.00 0.00 0.00 3.82
1392 1553 4.160439 AGAGAAACAGAGTGTGAAGTGTGA 59.840 41.667 0.00 0.00 0.00 3.58
1393 1554 4.832248 AGAAACAGAGTGTGAAGTGTGAA 58.168 39.130 0.00 0.00 0.00 3.18
1449 1610 8.628882 ATCTGTTTTGTTTTGTTAAGTGCTAC 57.371 30.769 0.00 0.00 0.00 3.58
1450 1611 7.822658 TCTGTTTTGTTTTGTTAAGTGCTACT 58.177 30.769 0.00 0.00 0.00 2.57
1451 1612 7.753132 TCTGTTTTGTTTTGTTAAGTGCTACTG 59.247 33.333 0.00 0.00 0.00 2.74
1498 1662 3.367703 GCAGCAACAGCATTTTATCTGGT 60.368 43.478 0.00 0.00 34.76 4.00
1539 1703 8.557864 GTTTGTCTTCTTAGTTCTTACCCTTTC 58.442 37.037 0.00 0.00 0.00 2.62
1728 1900 4.098155 TGTAGCCTACCACACCAATAGAA 58.902 43.478 0.00 0.00 0.00 2.10
1863 2045 2.512485 TTGTGCTTGGATGCAACTTG 57.488 45.000 0.00 0.00 45.12 3.16
1877 2059 2.618709 GCAACTTGGCAGTCAGTAGTTT 59.381 45.455 0.00 0.00 30.45 2.66
1952 2141 7.015877 GGAAGTTGATTGTCTACGAATCAAAC 58.984 38.462 9.90 6.12 46.33 2.93
2026 2216 6.757897 TTTCAAGATATGTTGCTTACTGGG 57.242 37.500 7.71 0.00 0.00 4.45
2034 2224 3.735591 TGTTGCTTACTGGGTTCTACAC 58.264 45.455 0.00 0.00 0.00 2.90
2037 2227 4.267349 TGCTTACTGGGTTCTACACTTC 57.733 45.455 0.00 0.00 0.00 3.01
2041 2231 6.042322 TGCTTACTGGGTTCTACACTTCTTTA 59.958 38.462 0.00 0.00 0.00 1.85
2042 2232 6.368243 GCTTACTGGGTTCTACACTTCTTTAC 59.632 42.308 0.00 0.00 0.00 2.01
2061 2251 8.008513 TCTTTACTTATAAGTAGCTGACCTGG 57.991 38.462 21.45 0.00 42.04 4.45
2066 2256 1.562783 AAGTAGCTGACCTGGGTCTC 58.437 55.000 18.92 11.48 44.80 3.36
2092 2282 5.807344 ACTTTGCAGAGACGTTTAAAGAAC 58.193 37.500 11.85 0.00 0.00 3.01
2121 2311 6.449830 ACCAAAACTGATAGTAAGTTCCCT 57.550 37.500 0.00 0.00 36.87 4.20
2170 2360 3.876274 TTGTGGTTGCAGTGCTAAAAA 57.124 38.095 17.60 0.00 0.00 1.94
2171 2361 3.157932 TGTGGTTGCAGTGCTAAAAAC 57.842 42.857 17.60 11.82 0.00 2.43
2172 2362 2.159170 TGTGGTTGCAGTGCTAAAAACC 60.159 45.455 22.14 22.14 40.59 3.27
2312 2502 7.442062 TGTCCATATTCTGTATTGTGTGCTATG 59.558 37.037 0.00 0.00 0.00 2.23
2314 2504 7.657354 TCCATATTCTGTATTGTGTGCTATGTC 59.343 37.037 0.00 0.00 0.00 3.06
2322 2512 7.382898 TGTATTGTGTGCTATGTCAAAGACTA 58.617 34.615 0.00 0.00 33.15 2.59
2323 2513 6.727824 ATTGTGTGCTATGTCAAAGACTAC 57.272 37.500 0.00 0.00 33.15 2.73
2606 2802 9.658799 TTTCCAACTTTGTTTAATGATGTCAAA 57.341 25.926 0.00 0.00 0.00 2.69
2608 2804 9.092876 TCCAACTTTGTTTAATGATGTCAAAAC 57.907 29.630 4.24 4.24 30.98 2.43
2749 2946 5.592282 TCTTGTGTTATTTCACAGGAAGCAA 59.408 36.000 8.69 0.00 46.15 3.91
2777 2975 2.083774 CGAGGCTTAGTGCATTTTCCA 58.916 47.619 0.00 0.00 45.15 3.53
2787 2985 7.380602 GCTTAGTGCATTTTCCATACATTGATC 59.619 37.037 0.00 0.00 42.31 2.92
2905 3103 6.757897 ACTCTCTAGATTTGACTCAGTCTG 57.242 41.667 6.33 0.00 33.15 3.51
2926 3124 5.527214 TCTGTGGGAAAATGTGCTAATATCG 59.473 40.000 0.00 0.00 0.00 2.92
2930 3128 5.527214 TGGGAAAATGTGCTAATATCGACAG 59.473 40.000 0.00 0.00 0.00 3.51
3029 3228 4.930696 TCCCTCCTTCCCAAAAGATTAAC 58.069 43.478 0.00 0.00 0.00 2.01
3144 3343 5.828328 GTGGGAAGGAGGGAGTATAATTTTG 59.172 44.000 0.00 0.00 0.00 2.44
3147 3346 6.996879 GGGAAGGAGGGAGTATAATTTTGTAC 59.003 42.308 0.00 0.00 0.00 2.90
3183 3390 7.526918 CAACTAATTTGGAATAGGGGGAGTAT 58.473 38.462 0.00 0.00 0.00 2.12
3251 3461 3.181967 CAGCACCGTACTGCGCTC 61.182 66.667 9.73 0.00 42.42 5.03
3373 3583 5.960811 TGAATCTACTCCAGAAGTCAGGATT 59.039 40.000 0.00 0.00 39.55 3.01
3376 3586 1.280421 ACTCCAGAAGTCAGGATTGGC 59.720 52.381 0.00 0.00 30.02 4.52
3459 3669 2.818169 GGCTGGTGGGTCTGTGTGA 61.818 63.158 0.00 0.00 0.00 3.58
3511 3721 5.241949 TGCATTTTCTTAACGTAATGGTGGT 59.758 36.000 8.19 0.00 0.00 4.16
3710 3952 3.988976 TGGCAGAAAGAGCAGAACTAT 57.011 42.857 0.00 0.00 0.00 2.12
3873 4115 4.236935 GGAACAGCACATTTAACATGGTG 58.763 43.478 0.00 9.35 45.19 4.17
4085 4328 8.901748 CGATTTAAACAGGTCAAGTATGTTTTG 58.098 33.333 7.72 0.00 42.82 2.44
4229 4472 5.407691 GGTAACTAGCCTATTTATTGCCGTC 59.592 44.000 0.00 0.00 0.00 4.79
4252 4681 8.176365 CGTCTCTTCGTTATCCTTACTATATGG 58.824 40.741 0.00 0.00 0.00 2.74
4590 5019 8.300495 TCAACTTTGGTTTCACTAACAAAAAC 57.700 30.769 0.00 0.00 38.78 2.43
4657 5086 5.752892 TTCACTAGGCTCTATACAGAACG 57.247 43.478 0.00 0.00 0.00 3.95
4929 5358 2.105477 ACAGTCTGAAGGTGTGCATTCT 59.895 45.455 6.91 0.00 36.47 2.40
4944 5373 7.545265 GGTGTGCATTCTTAAGCATTGAATTTA 59.455 33.333 0.00 0.00 43.44 1.40
4969 5398 7.815840 TTGATTGTGAAAGAGTATCAACCAA 57.184 32.000 0.00 0.00 37.82 3.67
5104 5533 5.562298 TTCTGTTAAAGTCAGGTAGCCTT 57.438 39.130 0.00 0.00 34.15 4.35
5107 5536 6.640518 TCTGTTAAAGTCAGGTAGCCTTATG 58.359 40.000 0.00 0.00 34.15 1.90
5145 5586 1.180029 CTGATTTGTGCCTCTTGGGG 58.820 55.000 0.00 0.00 35.12 4.96
5367 5809 9.695526 TCAATCAAAAGTTCCATTACATTTCTG 57.304 29.630 0.00 0.00 0.00 3.02
5412 5854 0.458543 AACAGCGCGAGTCATACTGG 60.459 55.000 12.10 0.00 32.60 4.00
5464 5906 0.175760 GCTCAGTACCATGGCGAAGA 59.824 55.000 13.04 4.47 0.00 2.87
5502 5944 6.267014 ACACACACTGATGTTAGTAGTACCTT 59.733 38.462 0.00 0.00 36.72 3.50
5542 5984 5.886474 TGATAGTGTGTCAGGTTACTCTAGG 59.114 44.000 0.00 0.00 0.00 3.02
5545 5987 5.638133 AGTGTGTCAGGTTACTCTAGGTTA 58.362 41.667 0.00 0.00 0.00 2.85
5558 6000 5.685728 ACTCTAGGTTAATCCAAATCCTGC 58.314 41.667 0.00 0.00 39.02 4.85
5593 6035 3.461061 TGTGCTTATCAGTGAGCATAGC 58.539 45.455 8.59 9.44 46.83 2.97
5594 6036 3.118665 TGTGCTTATCAGTGAGCATAGCA 60.119 43.478 8.59 11.57 46.83 3.49
5596 6038 3.133542 TGCTTATCAGTGAGCATAGCAGT 59.866 43.478 13.86 0.00 41.46 4.40
5597 6039 3.740321 GCTTATCAGTGAGCATAGCAGTC 59.260 47.826 0.00 0.00 36.97 3.51
5598 6040 4.501229 GCTTATCAGTGAGCATAGCAGTCT 60.501 45.833 0.00 0.00 36.97 3.24
5601 6050 3.356290 TCAGTGAGCATAGCAGTCTGTA 58.644 45.455 0.93 0.00 0.00 2.74
5617 6066 3.228453 TCTGTAAGAACGTCAGGGAGTT 58.772 45.455 0.00 0.00 42.31 3.01
5618 6067 3.640029 TCTGTAAGAACGTCAGGGAGTTT 59.360 43.478 0.00 0.00 42.31 2.66
5619 6068 3.724374 TGTAAGAACGTCAGGGAGTTTG 58.276 45.455 0.00 0.00 0.00 2.93
5620 6069 3.133362 TGTAAGAACGTCAGGGAGTTTGT 59.867 43.478 0.00 0.00 0.00 2.83
5621 6070 3.277142 AAGAACGTCAGGGAGTTTGTT 57.723 42.857 0.00 0.00 0.00 2.83
5622 6071 4.411256 AAGAACGTCAGGGAGTTTGTTA 57.589 40.909 0.00 0.00 0.00 2.41
5623 6072 3.991367 AGAACGTCAGGGAGTTTGTTAG 58.009 45.455 0.00 0.00 0.00 2.34
5624 6073 2.165319 ACGTCAGGGAGTTTGTTAGC 57.835 50.000 0.00 0.00 0.00 3.09
5625 6074 1.414919 ACGTCAGGGAGTTTGTTAGCA 59.585 47.619 0.00 0.00 0.00 3.49
5626 6075 2.038557 ACGTCAGGGAGTTTGTTAGCAT 59.961 45.455 0.00 0.00 0.00 3.79
5627 6076 2.673368 CGTCAGGGAGTTTGTTAGCATC 59.327 50.000 0.00 0.00 0.00 3.91
5628 6077 3.617531 CGTCAGGGAGTTTGTTAGCATCT 60.618 47.826 0.00 0.00 0.00 2.90
5629 6078 3.686726 GTCAGGGAGTTTGTTAGCATCTG 59.313 47.826 0.00 0.00 0.00 2.90
5673 6122 6.318648 TCATGTCTTTGCCACCATTTCTATAC 59.681 38.462 0.00 0.00 0.00 1.47
5722 6172 3.485463 TTACTTGCAGTTGCTAGGTGT 57.515 42.857 17.40 3.18 45.76 4.16
5972 6422 1.587547 GGAGCGGAGAAATCCATGTC 58.412 55.000 0.00 0.00 33.08 3.06
5993 6443 3.471244 GATCACCCGGAGAGTCGCG 62.471 68.421 0.73 0.00 0.00 5.87
6010 6463 2.220133 TCGCGAACTCGGAAAAGAAAAG 59.780 45.455 6.20 0.00 40.23 2.27
6059 6512 3.197766 TCGGCAAAGGACACAAGATATCT 59.802 43.478 0.00 0.00 0.00 1.98
6082 6535 2.094675 ACAGGTGAGCCAATGCATAAC 58.905 47.619 0.00 0.00 41.13 1.89
6182 6642 6.016777 GTGATGAACATCCTTTGAAACTCTGT 60.017 38.462 11.51 0.00 37.02 3.41
6183 6643 7.173218 GTGATGAACATCCTTTGAAACTCTGTA 59.827 37.037 11.51 0.00 37.02 2.74
6213 6673 2.039480 AGACAGCCTGAAGAAATGCTCA 59.961 45.455 0.00 0.00 30.08 4.26
6222 6682 1.831580 AGAAATGCTCAGGCTTGGTC 58.168 50.000 0.00 0.00 39.59 4.02
6339 6799 2.044252 AAGGCCCTGATGCTGCAG 60.044 61.111 10.11 10.11 35.66 4.41
6414 6880 5.141910 AGGACCTCCTGCTAGTAATTAGAC 58.858 45.833 0.00 0.00 46.55 2.59
6421 6887 7.195374 TCCTGCTAGTAATTAGACCAACAAT 57.805 36.000 0.00 0.00 0.00 2.71
6433 6899 2.625790 GACCAACAATTACTGCCCACAA 59.374 45.455 0.00 0.00 0.00 3.33
6436 6902 3.069443 CCAACAATTACTGCCCACAAACT 59.931 43.478 0.00 0.00 0.00 2.66
6446 6912 1.474077 GCCCACAAACTAGATGGCAAG 59.526 52.381 0.00 0.00 38.73 4.01
6530 6997 8.568617 AAGTAAGTAGATGGGTAGGAAATCAT 57.431 34.615 0.00 0.00 0.00 2.45
6574 7183 5.342433 ACGCCCTTAAAGTTGTACAAAAAC 58.658 37.500 10.51 0.00 0.00 2.43
6578 7187 6.277605 CCCTTAAAGTTGTACAAAAACCCTG 58.722 40.000 10.51 0.00 0.00 4.45
6584 7193 5.726397 AGTTGTACAAAAACCCTGGAAAAC 58.274 37.500 10.51 0.00 0.00 2.43
6603 7212 7.913297 TGGAAAACGAGTTGTAAATTTTCAGAG 59.087 33.333 0.00 0.00 39.79 3.35
6611 7220 8.147642 AGTTGTAAATTTTCAGAGAGAGTGTG 57.852 34.615 0.00 0.00 0.00 3.82
6625 7234 2.880890 AGAGTGTGAAATGACTTGTGGC 59.119 45.455 0.00 0.00 0.00 5.01
6671 7280 0.110295 TGCAGCTTACCAAAGGCTCA 59.890 50.000 0.00 0.00 32.98 4.26
6681 7290 1.421382 CAAAGGCTCACCATTTTGCG 58.579 50.000 0.00 0.00 39.06 4.85
6682 7291 1.039856 AAAGGCTCACCATTTTGCGT 58.960 45.000 0.00 0.00 39.06 5.24
6683 7292 1.039856 AAGGCTCACCATTTTGCGTT 58.960 45.000 0.00 0.00 39.06 4.84
6684 7293 1.039856 AGGCTCACCATTTTGCGTTT 58.960 45.000 0.00 0.00 39.06 3.60
6685 7294 1.412343 AGGCTCACCATTTTGCGTTTT 59.588 42.857 0.00 0.00 39.06 2.43
6686 7295 2.625790 AGGCTCACCATTTTGCGTTTTA 59.374 40.909 0.00 0.00 39.06 1.52
6687 7296 2.729360 GGCTCACCATTTTGCGTTTTAC 59.271 45.455 0.00 0.00 35.26 2.01
6691 7300 4.355437 TCACCATTTTGCGTTTTACACAG 58.645 39.130 0.00 0.00 0.00 3.66
6699 7308 4.283363 TGCGTTTTACACAGGGGTATAA 57.717 40.909 0.00 0.00 0.00 0.98
6700 7309 4.846040 TGCGTTTTACACAGGGGTATAAT 58.154 39.130 0.00 0.00 0.00 1.28
6705 7314 6.347079 CGTTTTACACAGGGGTATAATATGCG 60.347 42.308 0.00 0.00 0.00 4.73
6710 7319 3.260884 ACAGGGGTATAATATGCGACCAG 59.739 47.826 0.00 0.00 33.33 4.00
6712 7321 2.629051 GGGTATAATATGCGACCAGGC 58.371 52.381 0.00 0.00 33.33 4.85
6719 7328 1.312371 TATGCGACCAGGCTTTTGGC 61.312 55.000 0.00 0.00 42.18 4.52
6728 7337 3.289128 GGCTTTTGGCAACTGAACC 57.711 52.632 0.00 0.00 45.26 3.62
6729 7338 0.752658 GGCTTTTGGCAACTGAACCT 59.247 50.000 0.00 0.00 45.26 3.50
6730 7339 1.138859 GGCTTTTGGCAACTGAACCTT 59.861 47.619 0.00 0.00 45.26 3.50
6731 7340 2.419990 GGCTTTTGGCAACTGAACCTTT 60.420 45.455 0.00 0.00 45.26 3.11
6732 7341 3.270027 GCTTTTGGCAACTGAACCTTTT 58.730 40.909 0.00 0.00 41.35 2.27
6733 7342 3.689161 GCTTTTGGCAACTGAACCTTTTT 59.311 39.130 0.00 0.00 41.35 1.94
6734 7343 4.201812 GCTTTTGGCAACTGAACCTTTTTC 60.202 41.667 0.00 0.00 41.35 2.29
6737 7346 4.122143 TGGCAACTGAACCTTTTTCTTG 57.878 40.909 0.00 0.00 37.61 3.02
6738 7347 3.766591 TGGCAACTGAACCTTTTTCTTGA 59.233 39.130 0.00 0.00 37.61 3.02
6739 7348 4.405358 TGGCAACTGAACCTTTTTCTTGAT 59.595 37.500 0.00 0.00 37.61 2.57
6740 7349 5.596361 TGGCAACTGAACCTTTTTCTTGATA 59.404 36.000 0.00 0.00 37.61 2.15
6743 7352 7.657354 GGCAACTGAACCTTTTTCTTGATAAAT 59.343 33.333 0.00 0.00 0.00 1.40
6744 7353 8.490355 GCAACTGAACCTTTTTCTTGATAAATG 58.510 33.333 0.00 0.00 0.00 2.32
6747 7378 8.695456 ACTGAACCTTTTTCTTGATAAATGTGT 58.305 29.630 0.00 0.00 0.00 3.72
6750 7381 9.528018 GAACCTTTTTCTTGATAAATGTGTCAA 57.472 29.630 0.00 0.00 34.16 3.18
6761 7392 9.926158 TTGATAAATGTGTCAAGCATTATTTGT 57.074 25.926 0.00 0.00 35.73 2.83
6799 7431 7.875327 TTAGCATAAGAAGTTGGTATTTCCC 57.125 36.000 0.00 0.00 34.77 3.97
6800 7432 5.826643 AGCATAAGAAGTTGGTATTTCCCA 58.173 37.500 0.00 0.00 34.77 4.37
6801 7433 6.252995 AGCATAAGAAGTTGGTATTTCCCAA 58.747 36.000 0.00 0.00 42.16 4.12
6806 7438 9.990868 ATAAGAAGTTGGTATTTCCCAATTACT 57.009 29.630 0.00 0.00 45.79 2.24
6808 7440 6.663523 AGAAGTTGGTATTTCCCAATTACTGG 59.336 38.462 0.00 0.00 45.79 4.00
6809 7441 5.899278 AGTTGGTATTTCCCAATTACTGGT 58.101 37.500 0.00 0.00 45.79 4.00
6816 7448 4.726035 TTCCCAATTACTGGTGGTTACA 57.274 40.909 0.00 0.00 44.76 2.41
6817 7449 4.295141 TCCCAATTACTGGTGGTTACAG 57.705 45.455 0.00 0.00 44.76 2.74
6822 7454 5.339200 CCAATTACTGGTGGTTACAGGATCT 60.339 44.000 0.00 0.00 40.78 2.75
6825 7457 3.105283 ACTGGTGGTTACAGGATCTACC 58.895 50.000 0.00 0.00 40.23 3.18
6826 7458 3.104512 CTGGTGGTTACAGGATCTACCA 58.895 50.000 0.00 0.00 39.66 3.25
6827 7459 3.517901 CTGGTGGTTACAGGATCTACCAA 59.482 47.826 0.82 0.00 41.95 3.67
6828 7460 3.911260 TGGTGGTTACAGGATCTACCAAA 59.089 43.478 0.00 0.00 41.95 3.28
6829 7461 4.351407 TGGTGGTTACAGGATCTACCAAAA 59.649 41.667 0.00 0.00 41.95 2.44
6830 7462 5.014755 TGGTGGTTACAGGATCTACCAAAAT 59.985 40.000 0.00 0.00 41.95 1.82
6832 7464 6.415573 GTGGTTACAGGATCTACCAAAATCT 58.584 40.000 0.00 0.00 41.95 2.40
6833 7465 6.316390 GTGGTTACAGGATCTACCAAAATCTG 59.684 42.308 0.00 0.00 41.95 2.90
6849 7481 6.648502 CAAAATCTGGTAATTTTGTGTGTGC 58.351 36.000 11.91 0.00 45.30 4.57
6850 7482 4.519540 ATCTGGTAATTTTGTGTGTGCC 57.480 40.909 0.00 0.00 0.00 5.01
6855 7489 3.365565 GGTAATTTTGTGTGTGCCGGTAG 60.366 47.826 1.90 0.00 0.00 3.18
6879 7513 3.372206 CGAAACCTTGGCTGATAACTCTG 59.628 47.826 0.00 0.00 0.00 3.35
6881 7515 4.373156 AACCTTGGCTGATAACTCTGTT 57.627 40.909 0.00 0.00 0.00 3.16
6883 7517 4.729868 ACCTTGGCTGATAACTCTGTTTT 58.270 39.130 0.00 0.00 0.00 2.43
6891 7525 7.035612 GGCTGATAACTCTGTTTTAAATTGGG 58.964 38.462 0.00 0.00 0.00 4.12
6894 7528 6.723977 TGATAACTCTGTTTTAAATTGGGCCT 59.276 34.615 4.53 0.00 0.00 5.19
6898 7532 6.311735 ACTCTGTTTTAAATTGGGCCTCTTA 58.688 36.000 4.53 0.00 0.00 2.10
6899 7533 6.780522 ACTCTGTTTTAAATTGGGCCTCTTAA 59.219 34.615 4.53 3.20 0.00 1.85
6906 7540 9.500785 TTTTAAATTGGGCCTCTTAAGATTTTG 57.499 29.630 5.44 0.00 0.00 2.44
6907 7541 6.933514 AAATTGGGCCTCTTAAGATTTTGA 57.066 33.333 5.44 0.00 0.00 2.69
6908 7542 6.933514 AATTGGGCCTCTTAAGATTTTGAA 57.066 33.333 5.44 0.00 0.00 2.69
6909 7543 5.722021 TTGGGCCTCTTAAGATTTTGAAC 57.278 39.130 5.44 0.00 0.00 3.18
6913 7547 5.654209 GGGCCTCTTAAGATTTTGAACTCAT 59.346 40.000 5.44 0.00 0.00 2.90
6914 7548 6.405176 GGGCCTCTTAAGATTTTGAACTCATG 60.405 42.308 5.44 0.00 0.00 3.07
6915 7549 6.151817 GGCCTCTTAAGATTTTGAACTCATGT 59.848 38.462 5.44 0.00 0.00 3.21
6916 7550 7.025963 GCCTCTTAAGATTTTGAACTCATGTG 58.974 38.462 5.44 0.00 0.00 3.21
6921 7555 9.734620 CTTAAGATTTTGAACTCATGTGTTTCA 57.265 29.630 13.95 10.49 0.00 2.69
6922 7556 9.734620 TTAAGATTTTGAACTCATGTGTTTCAG 57.265 29.630 13.95 0.00 0.00 3.02
6926 7560 9.086336 GATTTTGAACTCATGTGTTTCAGAAAA 57.914 29.630 13.95 14.87 0.00 2.29
6929 7563 8.633075 TTGAACTCATGTGTTTCAGAAAATTC 57.367 30.769 13.95 0.00 0.00 2.17
6931 7565 6.966534 ACTCATGTGTTTCAGAAAATTCCT 57.033 33.333 0.00 0.00 0.00 3.36
6932 7566 7.352079 ACTCATGTGTTTCAGAAAATTCCTT 57.648 32.000 0.00 0.00 0.00 3.36
6933 7567 7.785033 ACTCATGTGTTTCAGAAAATTCCTTT 58.215 30.769 0.00 0.00 0.00 3.11
6934 7568 8.260114 ACTCATGTGTTTCAGAAAATTCCTTTT 58.740 29.630 0.00 0.00 37.28 2.27
6935 7569 9.101655 CTCATGTGTTTCAGAAAATTCCTTTTT 57.898 29.630 0.00 0.00 40.25 1.94
6972 7606 2.347691 TATGGCTGGAGCATGGGCAG 62.348 60.000 0.20 0.00 44.61 4.85
6973 7607 4.437587 GGCTGGAGCATGGGCAGT 62.438 66.667 0.20 0.00 44.61 4.40
6979 7613 4.326255 AGCATGGGCAGTTGCTAC 57.674 55.556 6.31 0.00 46.92 3.58
6981 7615 0.679002 AGCATGGGCAGTTGCTACAG 60.679 55.000 6.31 0.00 46.92 2.74
6982 7616 0.962356 GCATGGGCAGTTGCTACAGT 60.962 55.000 3.88 0.00 41.70 3.55
6989 7623 4.224147 TGGGCAGTTGCTACAGTTTATCTA 59.776 41.667 3.88 0.00 41.70 1.98
7000 7634 8.846211 TGCTACAGTTTATCTAAAAATATGGCC 58.154 33.333 0.00 0.00 0.00 5.36
7048 7685 5.096443 ACATCAGAATCCACTTTCTCCTC 57.904 43.478 0.00 0.00 33.69 3.71
7055 7692 0.695347 CCACTTTCTCCTCCTTGGCT 59.305 55.000 0.00 0.00 35.26 4.75
7056 7693 1.909302 CCACTTTCTCCTCCTTGGCTA 59.091 52.381 0.00 0.00 35.26 3.93
7059 7696 4.568592 CCACTTTCTCCTCCTTGGCTAAAT 60.569 45.833 0.00 0.00 35.26 1.40
7063 7706 4.772886 TCTCCTCCTTGGCTAAATTACC 57.227 45.455 0.00 0.00 35.26 2.85
7065 7708 4.788617 TCTCCTCCTTGGCTAAATTACCTT 59.211 41.667 0.00 0.00 35.26 3.50
7069 7712 7.648770 TCCTCCTTGGCTAAATTACCTTTTAT 58.351 34.615 0.00 0.00 35.26 1.40
7078 7721 6.096282 GCTAAATTACCTTTTATGGGCTCACA 59.904 38.462 0.00 0.00 0.00 3.58
7082 7725 7.582667 ATTACCTTTTATGGGCTCACATTAC 57.417 36.000 0.00 0.00 32.39 1.89
7084 7727 3.945285 CCTTTTATGGGCTCACATTACGT 59.055 43.478 0.00 0.00 32.39 3.57
7089 7732 3.688694 TGGGCTCACATTACGTAAAGT 57.311 42.857 12.81 11.43 0.00 2.66
7090 7733 4.804868 TGGGCTCACATTACGTAAAGTA 57.195 40.909 15.15 4.76 0.00 2.24
7091 7734 4.497300 TGGGCTCACATTACGTAAAGTAC 58.503 43.478 15.15 8.46 34.56 2.73
7097 7740 7.703621 GGCTCACATTACGTAAAGTACTTCATA 59.296 37.037 15.15 0.00 34.56 2.15
7101 7744 8.532341 CACATTACGTAAAGTACTTCATAGCTG 58.468 37.037 15.15 5.26 34.56 4.24
7103 7746 8.744011 CATTACGTAAAGTACTTCATAGCTGAC 58.256 37.037 12.81 0.00 34.56 3.51
7105 7748 6.864342 ACGTAAAGTACTTCATAGCTGACAT 58.136 36.000 8.95 0.00 0.00 3.06
7107 7750 7.817962 ACGTAAAGTACTTCATAGCTGACATTT 59.182 33.333 8.95 0.00 0.00 2.32
7123 7766 9.472361 AGCTGACATTTGATTATTGAAATATGC 57.528 29.630 0.00 0.00 0.00 3.14
7124 7767 9.472361 GCTGACATTTGATTATTGAAATATGCT 57.528 29.630 0.00 0.00 0.00 3.79
7145 7788 7.503521 TGCTTTATGTGTGTAAATCACTTGA 57.496 32.000 0.00 0.00 46.27 3.02
7146 7789 7.584108 TGCTTTATGTGTGTAAATCACTTGAG 58.416 34.615 0.00 0.00 46.27 3.02
7147 7790 7.023575 GCTTTATGTGTGTAAATCACTTGAGG 58.976 38.462 0.00 0.00 46.27 3.86
7148 7791 7.447374 TTTATGTGTGTAAATCACTTGAGGG 57.553 36.000 0.00 0.00 46.27 4.30
7149 7792 4.431416 TGTGTGTAAATCACTTGAGGGT 57.569 40.909 0.00 0.00 46.27 4.34
7150 7793 5.554437 TGTGTGTAAATCACTTGAGGGTA 57.446 39.130 0.00 0.00 46.27 3.69
7151 7794 5.547465 TGTGTGTAAATCACTTGAGGGTAG 58.453 41.667 0.00 0.00 46.27 3.18
7152 7795 4.392138 GTGTGTAAATCACTTGAGGGTAGC 59.608 45.833 0.00 0.00 46.27 3.58
7153 7796 4.286032 TGTGTAAATCACTTGAGGGTAGCT 59.714 41.667 0.00 0.00 46.27 3.32
7154 7797 4.870991 GTGTAAATCACTTGAGGGTAGCTC 59.129 45.833 0.00 0.00 43.13 4.09
7155 7798 4.777896 TGTAAATCACTTGAGGGTAGCTCT 59.222 41.667 0.00 0.00 0.00 4.09
7156 7799 3.902881 AATCACTTGAGGGTAGCTCTG 57.097 47.619 0.00 0.00 0.00 3.35
7157 7800 2.310779 TCACTTGAGGGTAGCTCTGT 57.689 50.000 0.00 0.00 0.00 3.41
7158 7801 2.609747 TCACTTGAGGGTAGCTCTGTT 58.390 47.619 0.00 0.00 0.00 3.16
7159 7802 2.300152 TCACTTGAGGGTAGCTCTGTTG 59.700 50.000 0.00 0.00 0.00 3.33
7160 7803 2.300152 CACTTGAGGGTAGCTCTGTTGA 59.700 50.000 0.00 0.00 0.00 3.18
7161 7804 2.300437 ACTTGAGGGTAGCTCTGTTGAC 59.700 50.000 0.00 0.00 0.00 3.18
7162 7805 1.267121 TGAGGGTAGCTCTGTTGACC 58.733 55.000 0.00 0.00 0.00 4.02
7164 7807 2.685202 GGGTAGCTCTGTTGACCCT 58.315 57.895 12.19 0.00 46.92 4.34
7165 7808 0.984995 GGGTAGCTCTGTTGACCCTT 59.015 55.000 12.19 0.00 46.92 3.95
7166 7809 1.066071 GGGTAGCTCTGTTGACCCTTC 60.066 57.143 12.19 0.00 46.92 3.46
7167 7810 1.066071 GGTAGCTCTGTTGACCCTTCC 60.066 57.143 0.00 0.00 0.00 3.46
7168 7811 0.895530 TAGCTCTGTTGACCCTTCCG 59.104 55.000 0.00 0.00 0.00 4.30
7169 7812 1.122019 AGCTCTGTTGACCCTTCCGT 61.122 55.000 0.00 0.00 0.00 4.69
7170 7813 0.670854 GCTCTGTTGACCCTTCCGTC 60.671 60.000 0.00 0.00 0.00 4.79
7171 7814 0.388649 CTCTGTTGACCCTTCCGTCG 60.389 60.000 0.00 0.00 35.40 5.12
7172 7815 1.111116 TCTGTTGACCCTTCCGTCGT 61.111 55.000 0.00 0.00 35.40 4.34
7173 7816 0.249741 CTGTTGACCCTTCCGTCGTT 60.250 55.000 0.00 0.00 35.40 3.85
7174 7817 0.178533 TGTTGACCCTTCCGTCGTTT 59.821 50.000 0.00 0.00 35.40 3.60
7175 7818 1.302366 GTTGACCCTTCCGTCGTTTT 58.698 50.000 0.00 0.00 35.40 2.43
7176 7819 2.158986 TGTTGACCCTTCCGTCGTTTTA 60.159 45.455 0.00 0.00 35.40 1.52
7177 7820 3.069289 GTTGACCCTTCCGTCGTTTTAT 58.931 45.455 0.00 0.00 35.40 1.40
7190 7833 5.350365 CCGTCGTTTTATCCTTTTCTCATGA 59.650 40.000 0.00 0.00 0.00 3.07
7205 7848 5.164620 TCTCATGAGAAATGCCAGTACAA 57.835 39.130 23.17 0.00 33.91 2.41
7210 7853 7.988737 TCATGAGAAATGCCAGTACAAATAAG 58.011 34.615 0.00 0.00 0.00 1.73
7215 7858 2.722094 TGCCAGTACAAATAAGCCAGG 58.278 47.619 0.00 0.00 0.00 4.45
7221 7864 5.240183 CCAGTACAAATAAGCCAGGATCATG 59.760 44.000 0.00 0.00 0.00 3.07
7250 7936 6.560253 TTTAGCTTCTCAAACACTTGGATC 57.440 37.500 0.00 0.00 33.01 3.36
7275 7961 9.492730 TCTATGATAAGATATCCAATGTAGGCA 57.507 33.333 0.00 0.00 0.00 4.75
7289 7975 6.351202 CCAATGTAGGCAAGAAATTCAATCCA 60.351 38.462 0.00 0.00 0.00 3.41
7297 7994 5.119743 GCAAGAAATTCAATCCAAACAGCTC 59.880 40.000 0.00 0.00 0.00 4.09
7313 8010 2.801483 AGCTCTGCTGTGTCTCTAAGA 58.199 47.619 0.00 0.00 37.57 2.10
7314 8011 3.364549 AGCTCTGCTGTGTCTCTAAGAT 58.635 45.455 0.00 0.00 37.57 2.40
7315 8012 3.130869 AGCTCTGCTGTGTCTCTAAGATG 59.869 47.826 0.00 0.00 37.57 2.90
7316 8013 3.119173 GCTCTGCTGTGTCTCTAAGATGT 60.119 47.826 0.00 0.00 0.00 3.06
7317 8014 4.097135 GCTCTGCTGTGTCTCTAAGATGTA 59.903 45.833 0.00 0.00 0.00 2.29
7318 8015 5.221224 GCTCTGCTGTGTCTCTAAGATGTAT 60.221 44.000 0.00 0.00 0.00 2.29
7319 8016 6.141560 TCTGCTGTGTCTCTAAGATGTATG 57.858 41.667 0.00 0.00 0.00 2.39
7320 8017 4.686972 TGCTGTGTCTCTAAGATGTATGC 58.313 43.478 0.00 0.00 0.00 3.14
7321 8018 4.160252 TGCTGTGTCTCTAAGATGTATGCA 59.840 41.667 0.00 0.00 0.00 3.96
7322 8019 4.744137 GCTGTGTCTCTAAGATGTATGCAG 59.256 45.833 0.00 0.00 0.00 4.41
7323 8020 5.680922 GCTGTGTCTCTAAGATGTATGCAGT 60.681 44.000 0.00 0.00 0.00 4.40
7324 8021 6.286240 TGTGTCTCTAAGATGTATGCAGTT 57.714 37.500 0.00 0.00 0.00 3.16
7325 8022 6.101997 TGTGTCTCTAAGATGTATGCAGTTG 58.898 40.000 0.00 0.00 0.00 3.16
7327 8024 5.053145 GTCTCTAAGATGTATGCAGTTGGG 58.947 45.833 0.00 0.00 0.00 4.12
7328 8025 4.101585 TCTCTAAGATGTATGCAGTTGGGG 59.898 45.833 0.00 0.00 0.00 4.96
7329 8026 3.780294 TCTAAGATGTATGCAGTTGGGGT 59.220 43.478 0.00 0.00 0.00 4.95
7337 8039 0.469705 TGCAGTTGGGGTGCATCTTT 60.470 50.000 0.00 0.00 45.96 2.52
7338 8040 0.037975 GCAGTTGGGGTGCATCTTTG 60.038 55.000 0.00 0.00 40.86 2.77
7352 8054 5.967674 GTGCATCTTTGGTTTCTGATTATCG 59.032 40.000 0.00 0.00 0.00 2.92
7354 8056 6.821160 TGCATCTTTGGTTTCTGATTATCGTA 59.179 34.615 0.00 0.00 0.00 3.43
7363 8065 9.878667 TGGTTTCTGATTATCGTATAAACAGAA 57.121 29.630 21.86 21.86 41.39 3.02
7389 8094 8.176814 TGGAATTAGTACAATACGAAAAGACG 57.823 34.615 0.00 0.00 39.31 4.18
7391 8096 8.650714 GGAATTAGTACAATACGAAAAGACGTT 58.349 33.333 0.00 0.00 44.14 3.99
7395 8100 7.704789 AGTACAATACGAAAAGACGTTTTCT 57.295 32.000 10.19 0.00 46.49 2.52
7396 8101 8.801715 AGTACAATACGAAAAGACGTTTTCTA 57.198 30.769 10.19 3.85 46.49 2.10
7397 8102 8.909671 AGTACAATACGAAAAGACGTTTTCTAG 58.090 33.333 10.19 0.31 46.49 2.43
7398 8103 7.935338 ACAATACGAAAAGACGTTTTCTAGA 57.065 32.000 10.19 0.00 46.49 2.43
7400 8105 8.433126 ACAATACGAAAAGACGTTTTCTAGATG 58.567 33.333 10.19 7.23 46.49 2.90
7401 8106 5.840940 ACGAAAAGACGTTTTCTAGATGG 57.159 39.130 10.19 0.00 46.49 3.51
7404 8109 6.073927 ACGAAAAGACGTTTTCTAGATGGAAC 60.074 38.462 10.19 0.00 46.49 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 0.252197 ATAATAAGGATCGCCGGGGC 59.748 55.000 14.85 0.00 39.96 5.80
10 11 2.356135 CAATAATAAGGATCGCCGGGG 58.644 52.381 13.31 13.31 39.96 5.73
58 59 0.394488 AGATTGAGACGGAGCCTCGA 60.394 55.000 3.26 0.00 33.51 4.04
60 61 0.103937 CCAGATTGAGACGGAGCCTC 59.896 60.000 0.00 0.00 0.00 4.70
64 65 1.144936 GCCCCAGATTGAGACGGAG 59.855 63.158 0.00 0.00 0.00 4.63
66 67 2.190578 GGCCCCAGATTGAGACGG 59.809 66.667 0.00 0.00 0.00 4.79
68 69 1.529309 GAGGGCCCCAGATTGAGAC 59.471 63.158 21.43 0.00 0.00 3.36
70 71 2.922234 GGAGGGCCCCAGATTGAG 59.078 66.667 21.43 0.00 0.00 3.02
84 85 4.824515 AGGACGAGCGGAGGGGAG 62.825 72.222 0.00 0.00 0.00 4.30
85 86 4.816984 GAGGACGAGCGGAGGGGA 62.817 72.222 0.00 0.00 0.00 4.81
87 88 4.824515 AGGAGGACGAGCGGAGGG 62.825 72.222 0.00 0.00 0.00 4.30
89 90 3.213402 GGAGGAGGACGAGCGGAG 61.213 72.222 0.00 0.00 0.00 4.63
90 91 3.700831 GAGGAGGAGGACGAGCGGA 62.701 68.421 0.00 0.00 0.00 5.54
91 92 3.213402 GAGGAGGAGGACGAGCGG 61.213 72.222 0.00 0.00 0.00 5.52
92 93 3.213402 GGAGGAGGAGGACGAGCG 61.213 72.222 0.00 0.00 0.00 5.03
93 94 1.826487 GAGGAGGAGGAGGACGAGC 60.826 68.421 0.00 0.00 0.00 5.03
94 95 1.152839 GGAGGAGGAGGAGGACGAG 60.153 68.421 0.00 0.00 0.00 4.18
95 96 1.619975 AGGAGGAGGAGGAGGACGA 60.620 63.158 0.00 0.00 0.00 4.20
96 97 1.152839 GAGGAGGAGGAGGAGGACG 60.153 68.421 0.00 0.00 0.00 4.79
97 98 1.231928 GGAGGAGGAGGAGGAGGAC 59.768 68.421 0.00 0.00 0.00 3.85
98 99 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
99 100 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
100 101 1.150536 CGAGGAGGAGGAGGAGGAG 59.849 68.421 0.00 0.00 0.00 3.69
101 102 1.619975 ACGAGGAGGAGGAGGAGGA 60.620 63.158 0.00 0.00 0.00 3.71
102 103 1.152839 GACGAGGAGGAGGAGGAGG 60.153 68.421 0.00 0.00 0.00 4.30
103 104 1.525077 CGACGAGGAGGAGGAGGAG 60.525 68.421 0.00 0.00 0.00 3.69
104 105 2.590645 CGACGAGGAGGAGGAGGA 59.409 66.667 0.00 0.00 0.00 3.71
105 106 2.517402 CCGACGAGGAGGAGGAGG 60.517 72.222 0.00 0.00 45.00 4.30
106 107 2.590645 TCCGACGAGGAGGAGGAG 59.409 66.667 0.00 0.00 45.98 3.69
115 116 3.441290 ACGAAGGCCTCCGACGAG 61.441 66.667 21.92 1.24 35.72 4.18
116 117 3.744719 CACGAAGGCCTCCGACGA 61.745 66.667 21.92 0.00 33.32 4.20
121 122 3.119096 GAACGCACGAAGGCCTCC 61.119 66.667 5.23 0.00 0.00 4.30
122 123 3.119096 GGAACGCACGAAGGCCTC 61.119 66.667 5.23 0.00 0.00 4.70
123 124 4.699522 GGGAACGCACGAAGGCCT 62.700 66.667 0.00 0.00 0.00 5.19
140 141 4.760047 CAGAGGCCAACCGGTCCG 62.760 72.222 8.04 3.60 37.79 4.79
246 259 0.937304 CGGGTGTGAATAATCGGCAG 59.063 55.000 0.00 0.00 0.00 4.85
259 284 0.903454 AGGAGTCGGAAATCGGGTGT 60.903 55.000 0.00 0.00 39.77 4.16
283 308 1.138859 TGGGTGACATCGCAATCTAGG 59.861 52.381 0.00 0.00 0.00 3.02
297 322 1.547675 GCCTTGGTCAGAATTGGGTGA 60.548 52.381 0.00 0.00 0.00 4.02
298 323 0.890683 GCCTTGGTCAGAATTGGGTG 59.109 55.000 0.00 0.00 0.00 4.61
299 324 0.482446 TGCCTTGGTCAGAATTGGGT 59.518 50.000 0.00 0.00 0.00 4.51
338 364 0.529378 GAACCGCGGAAAGGTAGAGA 59.471 55.000 35.90 0.00 41.95 3.10
345 376 0.801067 CCGTCTAGAACCGCGGAAAG 60.801 60.000 35.90 21.60 46.33 2.62
449 480 1.846439 TCCTTTCCCCCTTGCAGATAG 59.154 52.381 0.00 0.00 0.00 2.08
453 484 0.610232 CTGTCCTTTCCCCCTTGCAG 60.610 60.000 0.00 0.00 0.00 4.41
455 486 0.332972 ATCTGTCCTTTCCCCCTTGC 59.667 55.000 0.00 0.00 0.00 4.01
473 518 7.861629 TCACTTATGGGATCTTTCAGTGTAAT 58.138 34.615 10.39 0.00 33.40 1.89
475 520 6.867519 TCACTTATGGGATCTTTCAGTGTA 57.132 37.500 10.39 0.00 33.40 2.90
477 522 6.656693 ACTTTCACTTATGGGATCTTTCAGTG 59.343 38.462 0.00 0.00 33.00 3.66
489 534 3.290710 CCATCCCCACTTTCACTTATGG 58.709 50.000 0.00 0.00 0.00 2.74
498 543 1.392407 TTGATCCCCATCCCCACTTT 58.608 50.000 0.00 0.00 0.00 2.66
499 544 1.624173 ATTGATCCCCATCCCCACTT 58.376 50.000 0.00 0.00 0.00 3.16
500 545 1.218704 CAATTGATCCCCATCCCCACT 59.781 52.381 0.00 0.00 0.00 4.00
501 546 1.708341 CAATTGATCCCCATCCCCAC 58.292 55.000 0.00 0.00 0.00 4.61
502 547 0.105555 GCAATTGATCCCCATCCCCA 60.106 55.000 10.34 0.00 0.00 4.96
507 553 1.819305 GCTACGGCAATTGATCCCCAT 60.819 52.381 10.34 0.00 38.54 4.00
508 554 0.465460 GCTACGGCAATTGATCCCCA 60.465 55.000 10.34 0.00 38.54 4.96
510 556 0.179018 AGGCTACGGCAATTGATCCC 60.179 55.000 10.34 0.00 40.87 3.85
511 557 2.143925 GTAGGCTACGGCAATTGATCC 58.856 52.381 10.34 0.29 40.87 3.36
514 560 1.553248 ACTGTAGGCTACGGCAATTGA 59.447 47.619 28.99 5.27 38.64 2.57
529 575 8.534954 AGAAATTGACCTGCTATACTACTGTA 57.465 34.615 0.00 0.00 0.00 2.74
531 577 6.926272 GGAGAAATTGACCTGCTATACTACTG 59.074 42.308 0.00 0.00 0.00 2.74
534 580 7.445121 CATGGAGAAATTGACCTGCTATACTA 58.555 38.462 0.00 0.00 0.00 1.82
535 581 5.957771 TGGAGAAATTGACCTGCTATACT 57.042 39.130 0.00 0.00 0.00 2.12
536 582 5.471456 CCATGGAGAAATTGACCTGCTATAC 59.529 44.000 5.56 0.00 0.00 1.47
537 583 5.132648 ACCATGGAGAAATTGACCTGCTATA 59.867 40.000 21.47 0.00 0.00 1.31
539 585 3.266772 ACCATGGAGAAATTGACCTGCTA 59.733 43.478 21.47 0.00 0.00 3.49
542 591 6.567050 CAATTACCATGGAGAAATTGACCTG 58.433 40.000 28.56 14.47 40.24 4.00
560 609 2.018542 TGTCCCGTGCTAGCAATTAC 57.981 50.000 21.29 15.31 0.00 1.89
569 618 0.327924 TGAAATCCATGTCCCGTGCT 59.672 50.000 0.00 0.00 0.00 4.40
571 620 3.443329 TGAATTGAAATCCATGTCCCGTG 59.557 43.478 0.00 0.00 0.00 4.94
575 624 4.724074 TGCTGAATTGAAATCCATGTCC 57.276 40.909 0.00 0.00 0.00 4.02
577 626 5.011329 ACAGTTGCTGAATTGAAATCCATGT 59.989 36.000 2.91 0.00 35.18 3.21
656 709 3.582647 TGCTCCCACTTGTGAGATCTTTA 59.417 43.478 0.00 0.00 0.00 1.85
722 778 0.107508 ATGAAGAGACGCCACCATGG 60.108 55.000 11.19 11.19 41.55 3.66
793 864 1.334869 CACAACTTTCTCAGGCACCAC 59.665 52.381 0.00 0.00 0.00 4.16
794 865 1.064758 ACACAACTTTCTCAGGCACCA 60.065 47.619 0.00 0.00 0.00 4.17
925 1001 1.478654 GGATTCCACACACACCTTGGT 60.479 52.381 0.00 0.00 0.00 3.67
1195 1287 6.442513 ACAAACAGAGGAGAAAGAAACAAG 57.557 37.500 0.00 0.00 0.00 3.16
1207 1299 6.479006 ATTCATGATCTGAACAAACAGAGGA 58.521 36.000 0.00 0.00 46.37 3.71
1245 1338 9.730705 ATACATGCTATGCTAAAAGTATCATGT 57.269 29.630 13.10 13.10 38.40 3.21
1252 1345 7.667219 AGGCATTATACATGCTATGCTAAAAGT 59.333 33.333 16.46 0.00 44.02 2.66
1254 1347 7.094248 CCAGGCATTATACATGCTATGCTAAAA 60.094 37.037 16.46 0.00 44.02 1.52
1255 1348 6.375174 CCAGGCATTATACATGCTATGCTAAA 59.625 38.462 16.46 0.00 44.02 1.85
1257 1350 5.045651 ACCAGGCATTATACATGCTATGCTA 60.046 40.000 16.46 0.00 44.02 3.49
1258 1351 4.263639 ACCAGGCATTATACATGCTATGCT 60.264 41.667 16.46 5.71 44.02 3.79
1259 1352 4.012374 ACCAGGCATTATACATGCTATGC 58.988 43.478 15.07 11.36 44.02 3.14
1260 1353 5.494724 AGACCAGGCATTATACATGCTATG 58.505 41.667 15.07 13.79 44.02 2.23
1261 1354 5.768980 AGACCAGGCATTATACATGCTAT 57.231 39.130 15.07 0.00 44.02 2.97
1262 1355 5.308014 CAAGACCAGGCATTATACATGCTA 58.692 41.667 15.07 0.00 44.02 3.49
1263 1356 4.139786 CAAGACCAGGCATTATACATGCT 58.860 43.478 15.07 1.67 44.02 3.79
1264 1357 3.254166 CCAAGACCAGGCATTATACATGC 59.746 47.826 9.90 9.90 43.85 4.06
1265 1358 3.822735 CCCAAGACCAGGCATTATACATG 59.177 47.826 0.00 0.00 0.00 3.21
1266 1359 4.104383 CCCAAGACCAGGCATTATACAT 57.896 45.455 0.00 0.00 0.00 2.29
1267 1360 3.576078 CCCAAGACCAGGCATTATACA 57.424 47.619 0.00 0.00 0.00 2.29
1280 1373 1.026718 CCTGAATGGTCGCCCAAGAC 61.027 60.000 0.00 0.00 46.04 3.01
1281 1374 1.299648 CCTGAATGGTCGCCCAAGA 59.700 57.895 0.00 0.00 46.04 3.02
1282 1375 3.909662 CCTGAATGGTCGCCCAAG 58.090 61.111 0.00 0.00 46.04 3.61
1290 1383 7.661847 GCTATATGCTAAAAGTACCTGAATGGT 59.338 37.037 0.00 0.00 44.87 3.55
1291 1384 7.661437 TGCTATATGCTAAAAGTACCTGAATGG 59.339 37.037 0.00 0.00 43.37 3.16
1292 1385 8.607441 TGCTATATGCTAAAAGTACCTGAATG 57.393 34.615 0.00 0.00 43.37 2.67
1293 1386 9.224267 CATGCTATATGCTAAAAGTACCTGAAT 57.776 33.333 0.00 0.00 43.37 2.57
1294 1387 8.210946 ACATGCTATATGCTAAAAGTACCTGAA 58.789 33.333 0.00 0.00 43.37 3.02
1295 1388 7.735917 ACATGCTATATGCTAAAAGTACCTGA 58.264 34.615 0.00 0.00 43.37 3.86
1296 1389 7.969536 ACATGCTATATGCTAAAAGTACCTG 57.030 36.000 0.00 0.00 43.37 4.00
1313 1406 5.308014 CAAGACCAGGCATTATACATGCTA 58.692 41.667 15.07 0.00 44.02 3.49
1314 1407 4.139786 CAAGACCAGGCATTATACATGCT 58.860 43.478 15.07 1.67 44.02 3.79
1315 1408 3.254166 CCAAGACCAGGCATTATACATGC 59.746 47.826 9.90 9.90 43.85 4.06
1316 1409 3.822735 CCCAAGACCAGGCATTATACATG 59.177 47.826 0.00 0.00 0.00 3.21
1317 1410 4.104383 CCCAAGACCAGGCATTATACAT 57.896 45.455 0.00 0.00 0.00 2.29
1327 1469 1.966451 GTGAACGCCCAAGACCAGG 60.966 63.158 0.00 0.00 0.00 4.45
1423 1584 9.724839 GTAGCACTTAACAAAACAAAACAGATA 57.275 29.630 0.00 0.00 0.00 1.98
1498 1662 3.073356 AGACAAACGAAACCATTAGGGGA 59.927 43.478 0.00 0.00 42.91 4.81
1539 1703 3.005791 TCCCATACTGCATCAGTGATACG 59.994 47.826 5.03 0.00 45.01 3.06
1699 1870 2.561419 GTGTGGTAGGCTACAACAGAGA 59.439 50.000 30.49 10.12 42.94 3.10
1728 1900 0.107410 TGTTCAACCACTCGCAAGGT 60.107 50.000 0.00 0.00 40.61 3.50
1863 2045 6.387041 AAACCTTTTAAACTACTGACTGCC 57.613 37.500 0.00 0.00 0.00 4.85
1870 2052 8.261522 TGATTTGCCAAAACCTTTTAAACTACT 58.738 29.630 0.00 0.00 0.00 2.57
1877 2059 9.838339 TCTAATTTGATTTGCCAAAACCTTTTA 57.162 25.926 0.00 0.00 39.20 1.52
1921 2110 4.330074 CGTAGACAATCAACTTCCATGGAC 59.670 45.833 15.91 0.00 0.00 4.02
2005 2195 5.435686 ACCCAGTAAGCAACATATCTTGA 57.564 39.130 0.00 0.00 0.00 3.02
2034 2224 9.522804 CAGGTCAGCTACTTATAAGTAAAGAAG 57.477 37.037 22.47 14.97 40.70 2.85
2037 2227 7.147707 ACCCAGGTCAGCTACTTATAAGTAAAG 60.148 40.741 22.47 16.19 40.70 1.85
2041 2231 4.621769 ACCCAGGTCAGCTACTTATAAGT 58.378 43.478 21.35 21.35 42.91 2.24
2042 2232 4.896482 AGACCCAGGTCAGCTACTTATAAG 59.104 45.833 18.77 11.05 46.76 1.73
2066 2256 7.173863 TCTTTAAACGTCTCTGCAAAGTTAG 57.826 36.000 0.00 0.00 0.00 2.34
2083 2273 7.376615 TCAGTTTTGGTTTTCGGTTCTTTAAA 58.623 30.769 0.00 0.00 0.00 1.52
2092 2282 7.198306 ACTTACTATCAGTTTTGGTTTTCGG 57.802 36.000 0.00 0.00 0.00 4.30
2121 2311 8.760569 GCAAACGAAGAAGGAAAATGAATTAAA 58.239 29.630 0.00 0.00 0.00 1.52
2170 2360 1.916181 CTGGGGATGTAAGACCAAGGT 59.084 52.381 0.00 0.00 31.63 3.50
2171 2361 1.212935 CCTGGGGATGTAAGACCAAGG 59.787 57.143 0.00 0.00 31.63 3.61
2172 2362 2.196595 TCCTGGGGATGTAAGACCAAG 58.803 52.381 0.00 0.00 31.63 3.61
2217 2407 2.180159 TAGGTGGGCAAGAACCGAGC 62.180 60.000 0.00 0.00 41.61 5.03
2606 2802 3.558418 ACACATTTTTCGTAGTCAGCGTT 59.442 39.130 0.00 0.00 0.00 4.84
2608 2804 3.788434 ACACATTTTTCGTAGTCAGCG 57.212 42.857 0.00 0.00 0.00 5.18
2807 3005 1.600485 AGACAAAAACAGGTAACGGCG 59.400 47.619 4.80 4.80 46.39 6.46
2905 3103 5.295787 TGTCGATATTAGCACATTTTCCCAC 59.704 40.000 0.00 0.00 0.00 4.61
2985 3183 7.127339 AGGGAGTATAAACATCTACAACACCAT 59.873 37.037 0.00 0.00 0.00 3.55
3029 3228 7.878127 TCTGACATAAGACAAACCTTAAAGGAG 59.122 37.037 0.00 0.00 37.67 3.69
3144 3343 6.899114 CAAATTAGTTGGACCAAGTCTGTAC 58.101 40.000 18.05 0.00 33.18 2.90
3328 3538 6.114187 TCAAAAGAATAGAGGACAGCTTCA 57.886 37.500 0.00 0.00 0.00 3.02
3373 3583 1.164411 CACTTCCAAATGCTACGCCA 58.836 50.000 0.00 0.00 0.00 5.69
3376 3586 1.468520 CCACCACTTCCAAATGCTACG 59.531 52.381 0.00 0.00 0.00 3.51
3427 3637 0.037303 CCAGCCATGTTGAGACACCT 59.963 55.000 0.00 0.00 38.91 4.00
3459 3669 5.584551 ATCAAGGACTGAACTAAAGGGTT 57.415 39.130 0.00 0.00 37.67 4.11
3463 3673 8.394121 GCAAAGATATCAAGGACTGAACTAAAG 58.606 37.037 5.32 0.00 37.67 1.85
3511 3721 2.877097 ATGTCAGTACACAATGGCCA 57.123 45.000 8.56 8.56 38.78 5.36
3579 3821 2.935238 GCGAGGCTCAACCATTGTCTTA 60.935 50.000 15.95 0.00 43.14 2.10
3710 3952 3.634910 GCTTTGGTTGTTCCCTAACTCAA 59.365 43.478 0.00 0.00 36.51 3.02
3855 4097 3.581024 AGCACCATGTTAAATGTGCTG 57.419 42.857 19.88 0.00 44.98 4.41
3873 4115 0.743701 CACCTGTCTCTCCATGCAGC 60.744 60.000 0.00 0.00 0.00 5.25
4085 4328 4.875536 GCCCAAAATATTGTTGAACCATCC 59.124 41.667 10.22 0.00 34.60 3.51
4657 5086 1.202054 GCCGTACGAGAGAGTGTCTTC 60.202 57.143 18.76 0.00 34.71 2.87
4843 5272 8.195165 TCTCTCCTGAATCTACTTTTTCAAGA 57.805 34.615 0.00 0.00 31.85 3.02
4944 5373 8.299570 GTTGGTTGATACTCTTTCACAATCAAT 58.700 33.333 0.00 0.00 41.35 2.57
4960 5389 6.892658 AGCAAAATGTACTGTTGGTTGATA 57.107 33.333 0.00 0.00 29.03 2.15
4962 5391 6.238897 CCTTAGCAAAATGTACTGTTGGTTGA 60.239 38.462 11.70 4.05 34.92 3.18
4969 5398 6.067217 AGGATCCTTAGCAAAATGTACTGT 57.933 37.500 9.02 0.00 0.00 3.55
5027 5456 6.326843 AGGGTTTCATGGGTACTACTAAGATC 59.673 42.308 0.00 0.00 0.00 2.75
5104 5533 7.676004 TCAGTTGACAAAATGGAGACTACATA 58.324 34.615 0.00 0.00 32.26 2.29
5107 5536 7.440523 AATCAGTTGACAAAATGGAGACTAC 57.559 36.000 0.00 0.00 32.26 2.73
5412 5854 6.672147 TCTGCTTTAAAACTGCTCAGAAATC 58.328 36.000 3.60 0.00 0.00 2.17
5502 5944 9.671279 ACACACTATCAGACAATTATTCATGAA 57.329 29.630 11.26 11.26 0.00 2.57
5515 5957 5.416326 AGAGTAACCTGACACACTATCAGAC 59.584 44.000 3.58 0.00 45.46 3.51
5517 5959 5.906113 AGAGTAACCTGACACACTATCAG 57.094 43.478 0.00 0.00 42.79 2.90
5542 5984 4.454728 TGCTTGCAGGATTTGGATTAAC 57.545 40.909 0.00 0.00 0.00 2.01
5545 5987 3.069158 GCTATGCTTGCAGGATTTGGATT 59.931 43.478 0.00 0.00 0.00 3.01
5580 6022 2.174360 ACAGACTGCTATGCTCACTGA 58.826 47.619 1.25 0.00 0.00 3.41
5593 6035 2.557056 TCCCTGACGTTCTTACAGACTG 59.443 50.000 0.00 0.00 34.07 3.51
5594 6036 2.820787 CTCCCTGACGTTCTTACAGACT 59.179 50.000 2.95 0.00 34.07 3.24
5596 6038 2.872732 ACTCCCTGACGTTCTTACAGA 58.127 47.619 2.95 0.00 34.07 3.41
5597 6039 3.662247 AACTCCCTGACGTTCTTACAG 57.338 47.619 0.00 0.00 0.00 2.74
5598 6040 3.133362 ACAAACTCCCTGACGTTCTTACA 59.867 43.478 0.00 0.00 0.00 2.41
5601 6050 3.277142 AACAAACTCCCTGACGTTCTT 57.723 42.857 0.00 0.00 0.00 2.52
5623 6072 4.333649 TGCAAGAGTTAGCATTACAGATGC 59.666 41.667 2.90 2.90 44.85 3.91
5624 6073 6.426980 TTGCAAGAGTTAGCATTACAGATG 57.573 37.500 0.00 0.00 40.94 2.90
5625 6074 6.825213 TGATTGCAAGAGTTAGCATTACAGAT 59.175 34.615 4.94 0.00 40.94 2.90
5626 6075 6.172630 TGATTGCAAGAGTTAGCATTACAGA 58.827 36.000 4.94 0.00 40.94 3.41
5627 6076 6.426980 TGATTGCAAGAGTTAGCATTACAG 57.573 37.500 4.94 0.00 40.94 2.74
5628 6077 6.375174 ACATGATTGCAAGAGTTAGCATTACA 59.625 34.615 4.94 0.00 40.94 2.41
5629 6078 6.789262 ACATGATTGCAAGAGTTAGCATTAC 58.211 36.000 4.94 0.00 40.94 1.89
5722 6172 0.106769 TCAGCTCAAACTGGTTGCCA 60.107 50.000 0.00 0.00 38.26 4.92
5972 6422 0.101399 CGACTCTCCGGGTGATCTTG 59.899 60.000 0.00 0.00 0.00 3.02
5993 6443 3.300857 GCTGCTTTTCTTTTCCGAGTTC 58.699 45.455 0.00 0.00 0.00 3.01
6010 6463 2.762234 GCATCTGTCAGCAGGCTGC 61.762 63.158 31.56 31.56 45.46 5.25
6059 6512 2.270257 GCATTGGCTCACCTGTGCA 61.270 57.895 2.07 0.00 42.77 4.57
6182 6642 3.372440 TCAGGCTGTCTCTCATCTGTA 57.628 47.619 15.27 0.00 32.80 2.74
6183 6643 2.228545 TCAGGCTGTCTCTCATCTGT 57.771 50.000 15.27 0.00 32.80 3.41
6213 6673 4.052229 CCGTCGTCGACCAAGCCT 62.052 66.667 19.29 0.00 39.71 4.58
6339 6799 5.734720 TCAGAACCAAGGTCATGTATCTTC 58.265 41.667 0.00 0.00 0.00 2.87
6414 6880 3.069443 AGTTTGTGGGCAGTAATTGTTGG 59.931 43.478 0.00 0.00 0.00 3.77
6421 6887 3.872240 GCCATCTAGTTTGTGGGCAGTAA 60.872 47.826 0.00 0.00 41.02 2.24
6425 6891 3.264574 GCCATCTAGTTTGTGGGCA 57.735 52.632 0.00 0.00 41.02 5.36
6426 6892 1.474077 CTTGCCATCTAGTTTGTGGGC 59.526 52.381 0.00 0.00 41.70 5.36
6427 6893 3.012518 CTCTTGCCATCTAGTTTGTGGG 58.987 50.000 7.82 0.00 33.58 4.61
6446 6912 5.221891 TCTGCGAAAAATGATTAGCACTC 57.778 39.130 0.00 0.00 36.26 3.51
6574 7183 5.447624 AATTTACAACTCGTTTTCCAGGG 57.552 39.130 0.00 0.00 0.00 4.45
6578 7187 8.126700 TCTCTGAAAATTTACAACTCGTTTTCC 58.873 33.333 0.00 0.00 37.76 3.13
6584 7193 7.169982 ACACTCTCTCTGAAAATTTACAACTCG 59.830 37.037 0.00 0.00 0.00 4.18
6603 7212 3.058639 GCCACAAGTCATTTCACACTCTC 60.059 47.826 0.00 0.00 0.00 3.20
6611 7220 5.064452 CACTAGAGATGCCACAAGTCATTTC 59.936 44.000 0.00 0.00 0.00 2.17
6644 7253 4.380867 CCTTTGGTAAGCTGCAAATACTGG 60.381 45.833 1.02 1.50 0.00 4.00
6671 7280 3.491792 CCCTGTGTAAAACGCAAAATGGT 60.492 43.478 0.00 0.00 38.24 3.55
6681 7290 6.707161 TCGCATATTATACCCCTGTGTAAAAC 59.293 38.462 0.00 0.00 32.70 2.43
6682 7291 6.707161 GTCGCATATTATACCCCTGTGTAAAA 59.293 38.462 0.00 0.00 32.70 1.52
6683 7292 6.225318 GTCGCATATTATACCCCTGTGTAAA 58.775 40.000 0.00 0.00 32.70 2.01
6684 7293 5.279607 GGTCGCATATTATACCCCTGTGTAA 60.280 44.000 0.00 0.00 33.36 2.41
6685 7294 4.221262 GGTCGCATATTATACCCCTGTGTA 59.779 45.833 0.00 0.00 0.00 2.90
6686 7295 3.007614 GGTCGCATATTATACCCCTGTGT 59.992 47.826 0.00 0.00 0.00 3.72
6687 7296 3.007506 TGGTCGCATATTATACCCCTGTG 59.992 47.826 0.00 0.00 0.00 3.66
6691 7300 2.679930 GCCTGGTCGCATATTATACCCC 60.680 54.545 0.00 0.00 0.00 4.95
6699 7308 1.392589 CCAAAAGCCTGGTCGCATAT 58.607 50.000 0.00 0.00 0.00 1.78
6700 7309 1.312371 GCCAAAAGCCTGGTCGCATA 61.312 55.000 0.00 0.00 38.86 3.14
6705 7314 0.032540 CAGTTGCCAAAAGCCTGGTC 59.967 55.000 0.00 0.00 42.71 4.02
6710 7319 0.752658 AGGTTCAGTTGCCAAAAGCC 59.247 50.000 0.00 0.00 42.71 4.35
6712 7321 5.178061 AGAAAAAGGTTCAGTTGCCAAAAG 58.822 37.500 0.00 0.00 0.00 2.27
6719 7328 9.533253 ACATTTATCAAGAAAAAGGTTCAGTTG 57.467 29.630 0.00 0.00 0.00 3.16
6722 7331 9.185192 GACACATTTATCAAGAAAAAGGTTCAG 57.815 33.333 0.00 0.00 27.96 3.02
6723 7332 8.690884 TGACACATTTATCAAGAAAAAGGTTCA 58.309 29.630 0.00 0.00 27.96 3.18
6743 7352 8.791675 TCAGATTTACAAATAATGCTTGACACA 58.208 29.630 0.00 0.00 0.00 3.72
6744 7353 9.624697 TTCAGATTTACAAATAATGCTTGACAC 57.375 29.630 0.00 0.00 0.00 3.67
6799 7431 5.745227 AGATCCTGTAACCACCAGTAATTG 58.255 41.667 0.00 0.00 0.00 2.32
6800 7432 6.126854 GGTAGATCCTGTAACCACCAGTAATT 60.127 42.308 0.00 0.00 32.04 1.40
6801 7433 5.365895 GGTAGATCCTGTAACCACCAGTAAT 59.634 44.000 0.00 0.00 32.04 1.89
6806 7438 3.193395 TGGTAGATCCTGTAACCACCA 57.807 47.619 0.00 0.00 37.09 4.17
6808 7440 6.316390 CAGATTTTGGTAGATCCTGTAACCAC 59.684 42.308 0.00 0.00 41.58 4.16
6809 7441 6.414732 CAGATTTTGGTAGATCCTGTAACCA 58.585 40.000 0.00 0.00 40.19 3.67
6826 7458 5.757808 GGCACACACAAAATTACCAGATTTT 59.242 36.000 0.00 0.00 39.21 1.82
6827 7459 5.296748 GGCACACACAAAATTACCAGATTT 58.703 37.500 0.00 0.00 0.00 2.17
6828 7460 4.558496 CGGCACACACAAAATTACCAGATT 60.558 41.667 0.00 0.00 0.00 2.40
6829 7461 3.057596 CGGCACACACAAAATTACCAGAT 60.058 43.478 0.00 0.00 0.00 2.90
6830 7462 2.292016 CGGCACACACAAAATTACCAGA 59.708 45.455 0.00 0.00 0.00 3.86
6832 7464 1.338337 CCGGCACACACAAAATTACCA 59.662 47.619 0.00 0.00 0.00 3.25
6833 7465 1.338655 ACCGGCACACACAAAATTACC 59.661 47.619 0.00 0.00 0.00 2.85
6834 7466 2.785713 ACCGGCACACACAAAATTAC 57.214 45.000 0.00 0.00 0.00 1.89
6836 7468 1.000717 GCTACCGGCACACACAAAATT 60.001 47.619 0.00 0.00 41.35 1.82
6837 7469 0.596082 GCTACCGGCACACACAAAAT 59.404 50.000 0.00 0.00 41.35 1.82
6858 7492 4.327680 ACAGAGTTATCAGCCAAGGTTTC 58.672 43.478 0.00 0.00 0.00 2.78
6861 7495 4.373156 AAACAGAGTTATCAGCCAAGGT 57.627 40.909 0.00 0.00 0.00 3.50
6867 7501 6.531594 GCCCAATTTAAAACAGAGTTATCAGC 59.468 38.462 0.00 0.00 0.00 4.26
6871 7505 6.954102 AGAGGCCCAATTTAAAACAGAGTTAT 59.046 34.615 0.00 0.00 0.00 1.89
6873 7507 5.147767 AGAGGCCCAATTTAAAACAGAGTT 58.852 37.500 0.00 0.00 0.00 3.01
6879 7513 9.502091 AAAATCTTAAGAGGCCCAATTTAAAAC 57.498 29.630 11.53 0.00 0.00 2.43
6881 7515 8.875168 TCAAAATCTTAAGAGGCCCAATTTAAA 58.125 29.630 11.53 0.00 0.00 1.52
6883 7517 8.311109 GTTCAAAATCTTAAGAGGCCCAATTTA 58.689 33.333 11.53 0.00 0.00 1.40
6891 7525 7.025963 CACATGAGTTCAAAATCTTAAGAGGC 58.974 38.462 11.53 0.00 0.00 4.70
6894 7528 9.950680 GAAACACATGAGTTCAAAATCTTAAGA 57.049 29.630 7.82 7.82 0.00 2.10
6898 7532 7.999679 TCTGAAACACATGAGTTCAAAATCTT 58.000 30.769 9.04 0.00 0.00 2.40
6899 7533 7.572523 TCTGAAACACATGAGTTCAAAATCT 57.427 32.000 9.04 0.00 0.00 2.40
6906 7540 7.428826 AGGAATTTTCTGAAACACATGAGTTC 58.571 34.615 9.04 5.13 0.00 3.01
6907 7541 7.352079 AGGAATTTTCTGAAACACATGAGTT 57.648 32.000 0.00 0.00 0.00 3.01
6908 7542 6.966534 AGGAATTTTCTGAAACACATGAGT 57.033 33.333 0.00 0.00 0.00 3.41
6909 7543 8.652810 AAAAGGAATTTTCTGAAACACATGAG 57.347 30.769 0.00 0.00 0.00 2.90
6935 7569 5.887598 AGCCATATCTATCACTGCACAAAAA 59.112 36.000 0.00 0.00 0.00 1.94
6936 7570 5.297527 CAGCCATATCTATCACTGCACAAAA 59.702 40.000 0.00 0.00 0.00 2.44
6937 7571 4.818005 CAGCCATATCTATCACTGCACAAA 59.182 41.667 0.00 0.00 0.00 2.83
6938 7572 4.383173 CAGCCATATCTATCACTGCACAA 58.617 43.478 0.00 0.00 0.00 3.33
6939 7573 3.244318 CCAGCCATATCTATCACTGCACA 60.244 47.826 0.00 0.00 0.00 4.57
6940 7574 3.007290 TCCAGCCATATCTATCACTGCAC 59.993 47.826 0.00 0.00 0.00 4.57
6941 7575 3.242011 TCCAGCCATATCTATCACTGCA 58.758 45.455 0.00 0.00 0.00 4.41
6942 7576 3.859443 CTCCAGCCATATCTATCACTGC 58.141 50.000 0.00 0.00 0.00 4.40
6979 7613 9.903682 CAGATGGCCATATTTTTAGATAAACTG 57.096 33.333 20.84 12.27 0.00 3.16
6981 7615 8.306761 CCCAGATGGCCATATTTTTAGATAAAC 58.693 37.037 20.84 0.07 0.00 2.01
6982 7616 8.010105 ACCCAGATGGCCATATTTTTAGATAAA 58.990 33.333 20.84 0.00 37.83 1.40
6989 7623 5.777526 AAAACCCAGATGGCCATATTTTT 57.222 34.783 20.84 16.04 37.83 1.94
7028 7663 4.369872 AGGAGGAGAAAGTGGATTCTGAT 58.630 43.478 0.00 0.00 39.70 2.90
7029 7664 3.796111 AGGAGGAGAAAGTGGATTCTGA 58.204 45.455 0.00 0.00 39.70 3.27
7030 7665 4.260170 CAAGGAGGAGAAAGTGGATTCTG 58.740 47.826 0.00 0.00 39.70 3.02
7048 7685 6.685368 GCCCATAAAAGGTAATTTAGCCAAGG 60.685 42.308 2.08 0.00 0.00 3.61
7055 7692 8.602472 AATGTGAGCCCATAAAAGGTAATTTA 57.398 30.769 0.00 0.00 0.00 1.40
7056 7693 7.494922 AATGTGAGCCCATAAAAGGTAATTT 57.505 32.000 0.00 0.00 0.00 1.82
7059 7696 5.587043 CGTAATGTGAGCCCATAAAAGGTAA 59.413 40.000 0.00 0.00 0.00 2.85
7063 7706 6.671614 TTACGTAATGTGAGCCCATAAAAG 57.328 37.500 3.29 0.00 0.00 2.27
7065 7708 6.174760 ACTTTACGTAATGTGAGCCCATAAA 58.825 36.000 21.93 0.00 0.00 1.40
7069 7712 3.688694 ACTTTACGTAATGTGAGCCCA 57.311 42.857 21.93 0.00 0.00 5.36
7078 7721 8.464404 TGTCAGCTATGAAGTACTTTACGTAAT 58.536 33.333 10.02 0.00 37.14 1.89
7082 7725 7.757097 AATGTCAGCTATGAAGTACTTTACG 57.243 36.000 10.02 2.13 37.14 3.18
7084 7727 9.890629 ATCAAATGTCAGCTATGAAGTACTTTA 57.109 29.630 10.02 5.99 37.14 1.85
7090 7733 9.399797 TCAATAATCAAATGTCAGCTATGAAGT 57.600 29.630 0.00 0.00 37.14 3.01
7097 7740 9.472361 GCATATTTCAATAATCAAATGTCAGCT 57.528 29.630 0.00 0.00 0.00 4.24
7128 7771 9.827422 GAGCTACCCTCAAGTGATTTACACACA 62.827 44.444 0.00 0.00 44.39 3.72
7129 7772 7.559406 GAGCTACCCTCAAGTGATTTACACAC 61.559 46.154 0.00 0.00 44.39 3.82
7130 7773 5.568825 GAGCTACCCTCAAGTGATTTACACA 60.569 44.000 0.00 0.00 44.39 3.72
7131 7774 4.870991 GAGCTACCCTCAAGTGATTTACAC 59.129 45.833 0.00 0.00 43.42 2.90
7132 7775 4.777896 AGAGCTACCCTCAAGTGATTTACA 59.222 41.667 0.00 0.00 43.31 2.41
7133 7776 5.112686 CAGAGCTACCCTCAAGTGATTTAC 58.887 45.833 0.00 0.00 43.31 2.01
7134 7777 4.777896 ACAGAGCTACCCTCAAGTGATTTA 59.222 41.667 0.00 0.00 43.31 1.40
7135 7778 3.584848 ACAGAGCTACCCTCAAGTGATTT 59.415 43.478 0.00 0.00 43.31 2.17
7136 7779 3.177228 ACAGAGCTACCCTCAAGTGATT 58.823 45.455 0.00 0.00 43.31 2.57
7137 7780 2.826488 ACAGAGCTACCCTCAAGTGAT 58.174 47.619 0.00 0.00 43.31 3.06
7138 7781 2.300152 CAACAGAGCTACCCTCAAGTGA 59.700 50.000 0.00 0.00 43.31 3.41
7139 7782 2.300152 TCAACAGAGCTACCCTCAAGTG 59.700 50.000 0.00 0.00 43.31 3.16
7140 7783 2.300437 GTCAACAGAGCTACCCTCAAGT 59.700 50.000 0.00 0.00 43.31 3.16
7141 7784 2.354203 GGTCAACAGAGCTACCCTCAAG 60.354 54.545 0.00 0.00 43.31 3.02
7142 7785 1.623811 GGTCAACAGAGCTACCCTCAA 59.376 52.381 0.00 0.00 43.31 3.02
7143 7786 1.267121 GGTCAACAGAGCTACCCTCA 58.733 55.000 0.00 0.00 43.31 3.86
7144 7787 0.537653 GGGTCAACAGAGCTACCCTC 59.462 60.000 12.19 0.00 46.80 4.30
7145 7788 2.685202 GGGTCAACAGAGCTACCCT 58.315 57.895 12.19 0.00 46.80 4.34
7147 7790 1.066071 GGAAGGGTCAACAGAGCTACC 60.066 57.143 0.00 0.00 0.00 3.18
7148 7791 1.404315 CGGAAGGGTCAACAGAGCTAC 60.404 57.143 0.00 0.00 0.00 3.58
7149 7792 0.895530 CGGAAGGGTCAACAGAGCTA 59.104 55.000 0.00 0.00 0.00 3.32
7150 7793 1.122019 ACGGAAGGGTCAACAGAGCT 61.122 55.000 0.00 0.00 0.00 4.09
7151 7794 0.670854 GACGGAAGGGTCAACAGAGC 60.671 60.000 0.00 0.00 36.91 4.09
7152 7795 0.388649 CGACGGAAGGGTCAACAGAG 60.389 60.000 0.00 0.00 36.73 3.35
7153 7796 1.111116 ACGACGGAAGGGTCAACAGA 61.111 55.000 0.00 0.00 36.73 3.41
7154 7797 0.249741 AACGACGGAAGGGTCAACAG 60.250 55.000 0.00 0.00 36.73 3.16
7155 7798 0.178533 AAACGACGGAAGGGTCAACA 59.821 50.000 0.00 0.00 36.73 3.33
7156 7799 1.302366 AAAACGACGGAAGGGTCAAC 58.698 50.000 0.00 0.00 36.73 3.18
7157 7800 2.906691 TAAAACGACGGAAGGGTCAA 57.093 45.000 0.00 0.00 36.73 3.18
7158 7801 2.354003 GGATAAAACGACGGAAGGGTCA 60.354 50.000 0.00 0.00 36.73 4.02
7159 7802 2.093816 AGGATAAAACGACGGAAGGGTC 60.094 50.000 0.00 0.00 0.00 4.46
7160 7803 1.904537 AGGATAAAACGACGGAAGGGT 59.095 47.619 0.00 0.00 0.00 4.34
7161 7804 2.685850 AGGATAAAACGACGGAAGGG 57.314 50.000 0.00 0.00 0.00 3.95
7162 7805 4.694037 AGAAAAGGATAAAACGACGGAAGG 59.306 41.667 0.00 0.00 0.00 3.46
7163 7806 5.407387 TGAGAAAAGGATAAAACGACGGAAG 59.593 40.000 0.00 0.00 0.00 3.46
7164 7807 5.299148 TGAGAAAAGGATAAAACGACGGAA 58.701 37.500 0.00 0.00 0.00 4.30
7165 7808 4.885413 TGAGAAAAGGATAAAACGACGGA 58.115 39.130 0.00 0.00 0.00 4.69
7166 7809 5.350365 TCATGAGAAAAGGATAAAACGACGG 59.650 40.000 0.00 0.00 0.00 4.79
7167 7810 6.310467 TCTCATGAGAAAAGGATAAAACGACG 59.690 38.462 23.17 0.00 33.91 5.12
7168 7811 7.596749 TCTCATGAGAAAAGGATAAAACGAC 57.403 36.000 23.17 0.00 33.91 4.34
7190 7833 5.016173 TGGCTTATTTGTACTGGCATTTCT 58.984 37.500 0.00 0.00 0.00 2.52
7198 7841 6.057533 TCATGATCCTGGCTTATTTGTACTG 58.942 40.000 0.00 0.00 0.00 2.74
7228 7871 5.869579 AGATCCAAGTGTTTGAGAAGCTAA 58.130 37.500 0.00 0.00 36.36 3.09
7230 7873 4.363991 AGATCCAAGTGTTTGAGAAGCT 57.636 40.909 0.00 0.00 36.36 3.74
7231 7874 5.877012 TCATAGATCCAAGTGTTTGAGAAGC 59.123 40.000 0.00 0.00 36.36 3.86
7263 7949 6.127366 GGATTGAATTTCTTGCCTACATTGGA 60.127 38.462 0.00 0.00 0.00 3.53
7264 7950 6.044682 GGATTGAATTTCTTGCCTACATTGG 58.955 40.000 0.00 0.00 0.00 3.16
7270 7956 6.662865 TGTTTGGATTGAATTTCTTGCCTA 57.337 33.333 0.00 0.00 0.00 3.93
7271 7957 5.544650 CTGTTTGGATTGAATTTCTTGCCT 58.455 37.500 0.00 0.00 0.00 4.75
7273 7959 4.992951 AGCTGTTTGGATTGAATTTCTTGC 59.007 37.500 0.00 0.00 0.00 4.01
7274 7960 6.365247 CAGAGCTGTTTGGATTGAATTTCTTG 59.635 38.462 0.00 0.00 0.00 3.02
7275 7961 6.453092 CAGAGCTGTTTGGATTGAATTTCTT 58.547 36.000 0.00 0.00 0.00 2.52
7276 7962 5.566230 GCAGAGCTGTTTGGATTGAATTTCT 60.566 40.000 0.00 0.00 0.00 2.52
7277 7963 4.624452 GCAGAGCTGTTTGGATTGAATTTC 59.376 41.667 0.00 0.00 0.00 2.17
7297 7994 4.744137 GCATACATCTTAGAGACACAGCAG 59.256 45.833 0.00 0.00 0.00 4.24
7305 8002 4.101585 CCCCAACTGCATACATCTTAGAGA 59.898 45.833 0.00 0.00 0.00 3.10
7306 8003 4.141620 ACCCCAACTGCATACATCTTAGAG 60.142 45.833 0.00 0.00 0.00 2.43
7307 8004 3.780294 ACCCCAACTGCATACATCTTAGA 59.220 43.478 0.00 0.00 0.00 2.10
7309 8006 3.884895 CACCCCAACTGCATACATCTTA 58.115 45.455 0.00 0.00 0.00 2.10
7310 8007 2.726821 CACCCCAACTGCATACATCTT 58.273 47.619 0.00 0.00 0.00 2.40
7311 8008 1.683011 GCACCCCAACTGCATACATCT 60.683 52.381 0.00 0.00 34.56 2.90
7312 8009 0.740737 GCACCCCAACTGCATACATC 59.259 55.000 0.00 0.00 34.56 3.06
7313 8010 0.039472 TGCACCCCAACTGCATACAT 59.961 50.000 0.00 0.00 39.76 2.29
7314 8011 1.458045 TGCACCCCAACTGCATACA 59.542 52.632 0.00 0.00 39.76 2.29
7315 8012 4.413928 TGCACCCCAACTGCATAC 57.586 55.556 0.00 0.00 39.76 2.39
7319 8016 0.037975 CAAAGATGCACCCCAACTGC 60.038 55.000 0.00 0.00 35.03 4.40
7320 8017 0.604578 CCAAAGATGCACCCCAACTG 59.395 55.000 0.00 0.00 0.00 3.16
7321 8018 0.188342 ACCAAAGATGCACCCCAACT 59.812 50.000 0.00 0.00 0.00 3.16
7322 8019 1.047801 AACCAAAGATGCACCCCAAC 58.952 50.000 0.00 0.00 0.00 3.77
7323 8020 1.691434 GAAACCAAAGATGCACCCCAA 59.309 47.619 0.00 0.00 0.00 4.12
7324 8021 1.133199 AGAAACCAAAGATGCACCCCA 60.133 47.619 0.00 0.00 0.00 4.96
7325 8022 1.273327 CAGAAACCAAAGATGCACCCC 59.727 52.381 0.00 0.00 0.00 4.95
7327 8024 4.525912 AATCAGAAACCAAAGATGCACC 57.474 40.909 0.00 0.00 0.00 5.01
7328 8025 5.967674 CGATAATCAGAAACCAAAGATGCAC 59.032 40.000 0.00 0.00 0.00 4.57
7329 8026 5.647658 ACGATAATCAGAAACCAAAGATGCA 59.352 36.000 0.00 0.00 0.00 3.96
7337 8039 9.878667 TTCTGTTTATACGATAATCAGAAACCA 57.121 29.630 22.28 11.56 38.88 3.67
7357 8059 9.661563 TTCGTATTGTACTAATTCCATTCTGTT 57.338 29.630 0.00 0.00 0.00 3.16
7358 8060 9.661563 TTTCGTATTGTACTAATTCCATTCTGT 57.338 29.630 0.00 0.00 0.00 3.41
7363 8065 8.814235 CGTCTTTTCGTATTGTACTAATTCCAT 58.186 33.333 0.00 0.00 0.00 3.41
7364 8066 7.814107 ACGTCTTTTCGTATTGTACTAATTCCA 59.186 33.333 0.00 0.00 42.35 3.53
7365 8067 8.177980 ACGTCTTTTCGTATTGTACTAATTCC 57.822 34.615 0.00 0.00 42.35 3.01
7369 8071 9.248291 AGAAAACGTCTTTTCGTATTGTACTAA 57.752 29.630 6.99 0.00 46.87 2.24
7370 8072 8.801715 AGAAAACGTCTTTTCGTATTGTACTA 57.198 30.769 6.99 0.00 46.87 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.