Multiple sequence alignment - TraesCS3D01G036900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G036900 chr3D 100.000 5406 0 0 1 5406 13301320 13306725 0.000000e+00 9984.0
1 TraesCS3D01G036900 chr3D 81.961 1713 197 62 3261 4916 13294489 13296146 0.000000e+00 1349.0
2 TraesCS3D01G036900 chr3D 86.425 442 31 16 1010 1450 13291861 13292274 1.770000e-124 457.0
3 TraesCS3D01G036900 chr3D 89.583 48 4 1 1780 1826 310694247 310694200 5.850000e-05 60.2
4 TraesCS3D01G036900 chr3B 84.556 1690 156 50 3738 5362 19260357 19262006 0.000000e+00 1578.0
5 TraesCS3D01G036900 chr3B 84.754 1056 66 37 755 1776 19257442 19258436 0.000000e+00 970.0
6 TraesCS3D01G036900 chr3B 82.655 934 115 33 3264 4169 19249699 19250613 0.000000e+00 784.0
7 TraesCS3D01G036900 chr3B 89.865 444 40 3 1 440 19256641 19257083 2.830000e-157 566.0
8 TraesCS3D01G036900 chr3B 84.211 475 35 23 974 1446 19247510 19247946 5.000000e-115 425.0
9 TraesCS3D01G036900 chr3B 85.266 414 43 11 4172 4579 397259826 397259425 1.400000e-110 411.0
10 TraesCS3D01G036900 chr3B 86.352 381 24 19 3287 3647 19259895 19260267 1.830000e-104 390.0
11 TraesCS3D01G036900 chr3B 86.402 353 33 10 4235 4579 19250740 19251085 6.610000e-99 372.0
12 TraesCS3D01G036900 chr3A 86.875 1440 120 38 3176 4584 23833105 23831704 0.000000e+00 1548.0
13 TraesCS3D01G036900 chr3A 88.542 864 77 15 1848 2709 23834435 23833592 0.000000e+00 1027.0
14 TraesCS3D01G036900 chr3A 81.696 1038 119 41 3900 4892 23840110 23839099 0.000000e+00 798.0
15 TraesCS3D01G036900 chr3A 86.981 699 60 14 4652 5338 23831649 23830970 0.000000e+00 758.0
16 TraesCS3D01G036900 chr3A 84.544 647 74 18 3261 3900 23843186 23842559 7.690000e-173 617.0
17 TraesCS3D01G036900 chr3A 88.000 525 41 13 1265 1776 23835115 23834600 7.750000e-168 601.0
18 TraesCS3D01G036900 chr3A 89.556 383 21 7 755 1126 23835488 23835114 8.200000e-128 468.0
19 TraesCS3D01G036900 chr3A 94.301 193 9 2 1265 1457 23846437 23846247 1.470000e-75 294.0
20 TraesCS3D01G036900 chr3A 84.713 314 19 17 2739 3043 23833595 23833302 2.460000e-73 287.0
21 TraesCS3D01G036900 chr3A 81.143 350 53 10 4578 4922 23838595 23838254 8.930000e-68 268.0
22 TraesCS3D01G036900 chr3A 96.875 96 3 0 1031 1126 23846531 23846436 1.560000e-35 161.0
23 TraesCS3D01G036900 chr3A 83.019 159 17 5 2470 2624 23844973 23844821 9.440000e-28 135.0
24 TraesCS3D01G036900 chr3A 73.810 294 55 18 1787 2068 552020539 552020822 4.460000e-16 97.1
25 TraesCS3D01G036900 chr4B 80.660 1091 154 29 4172 5229 205683858 205684924 0.000000e+00 793.0
26 TraesCS3D01G036900 chr4B 86.719 128 13 3 4172 4296 357624147 357624021 7.300000e-29 139.0
27 TraesCS3D01G036900 chr4B 86.822 129 11 3 4172 4296 476632057 476631931 7.300000e-29 139.0
28 TraesCS3D01G036900 chr6B 80.512 1093 151 34 4172 5229 610406093 610405028 0.000000e+00 782.0
29 TraesCS3D01G036900 chr5D 86.541 639 41 27 944 1557 394992348 394992966 0.000000e+00 662.0
30 TraesCS3D01G036900 chr5D 87.313 134 12 5 1583 1712 394993840 394993972 1.210000e-31 148.0
31 TraesCS3D01G036900 chr5D 76.331 169 31 7 2191 2356 534083347 534083509 1.250000e-11 82.4
32 TraesCS3D01G036900 chr7D 77.230 426 88 7 1923 2343 605900219 605900640 1.950000e-59 241.0
33 TraesCS3D01G036900 chr7D 74.909 275 57 8 1801 2070 484747830 484747563 1.230000e-21 115.0
34 TraesCS3D01G036900 chr2D 87.050 139 18 0 3506 3644 601207357 601207219 2.020000e-34 158.0
35 TraesCS3D01G036900 chr2D 85.612 139 20 0 3506 3644 601213095 601212957 4.360000e-31 147.0
36 TraesCS3D01G036900 chr2B 87.050 139 18 0 3506 3644 731344774 731344636 2.020000e-34 158.0
37 TraesCS3D01G036900 chr2B 85.315 143 21 0 3502 3644 731461566 731461424 1.210000e-31 148.0
38 TraesCS3D01G036900 chr2B 85.271 129 13 3 4172 4296 453888187 453888061 1.580000e-25 128.0
39 TraesCS3D01G036900 chr7B 86.822 129 11 3 4172 4296 243750651 243750777 7.300000e-29 139.0
40 TraesCS3D01G036900 chr5B 72.980 396 79 20 1786 2172 685039250 685038874 4.430000e-21 113.0
41 TraesCS3D01G036900 chr6A 100.000 28 0 0 2316 2343 77696673 77696646 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G036900 chr3D 13301320 13306725 5405 False 9984.000000 9984 100.000000 1 5406 1 chr3D.!!$F1 5405
1 TraesCS3D01G036900 chr3D 13291861 13296146 4285 False 903.000000 1349 84.193000 1010 4916 2 chr3D.!!$F2 3906
2 TraesCS3D01G036900 chr3B 19256641 19262006 5365 False 876.000000 1578 86.381750 1 5362 4 chr3B.!!$F2 5361
3 TraesCS3D01G036900 chr3B 19247510 19251085 3575 False 527.000000 784 84.422667 974 4579 3 chr3B.!!$F1 3605
4 TraesCS3D01G036900 chr3A 23830970 23846531 15561 True 580.166667 1548 87.187083 755 5338 12 chr3A.!!$R1 4583
5 TraesCS3D01G036900 chr4B 205683858 205684924 1066 False 793.000000 793 80.660000 4172 5229 1 chr4B.!!$F1 1057
6 TraesCS3D01G036900 chr6B 610405028 610406093 1065 True 782.000000 782 80.512000 4172 5229 1 chr6B.!!$R1 1057
7 TraesCS3D01G036900 chr5D 394992348 394993972 1624 False 405.000000 662 86.927000 944 1712 2 chr5D.!!$F2 768

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
569 574 0.036164 TCCACATGTTGAAGACGGGG 59.964 55.0 0.00 0.0 0.00 5.73 F
619 624 0.173029 TGCATGCCGCTGGTTAAATG 59.827 50.0 16.68 0.0 43.06 2.32 F
620 625 0.173255 GCATGCCGCTGGTTAAATGT 59.827 50.0 6.36 0.0 37.77 2.71 F
2231 14356 0.181350 AATCCATCCAAGAGTCCGCC 59.819 55.0 0.00 0.0 0.00 6.13 F
3401 16168 0.040646 ACACCTACGGGGACTCATCA 59.959 55.0 3.71 0.0 38.76 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2212 14337 0.181350 GGCGGACTCTTGGATGGATT 59.819 55.0 0.00 0.00 0.00 3.01 R
2227 14352 0.679640 TTTAGTTCATGCAGGGGCGG 60.680 55.0 0.00 0.00 45.35 6.13 R
2271 14398 1.033574 GAGAGTCATGGTACCTCGGG 58.966 60.0 14.36 0.00 0.00 5.14 R
3725 16541 0.101040 CACACCTGCCAACACACAAG 59.899 55.0 0.00 0.00 0.00 3.16 R
5307 18301 0.508641 CTGAACGTTCTTGTGCCTCG 59.491 55.0 27.32 3.07 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 1.179814 AGGAAGAAGACAGGTCGCGT 61.180 55.000 5.77 0.00 34.09 6.01
81 82 1.298859 CGTTGCCCTTCCTTCCTTCG 61.299 60.000 0.00 0.00 0.00 3.79
190 191 8.385898 ACCTTTGTATTCAGTTTGTTCGATAA 57.614 30.769 0.00 0.00 0.00 1.75
282 284 1.067142 AGGAATGAGCACGCGTAGAAA 60.067 47.619 13.44 0.00 0.00 2.52
287 289 0.721718 GAGCACGCGTAGAAAAGCAT 59.278 50.000 13.44 0.00 0.00 3.79
348 353 1.043673 AGGACGAGGTGGGATGCTAC 61.044 60.000 0.00 0.00 0.00 3.58
364 369 1.795889 GCTACGCAAGAGAGAAGACGG 60.796 57.143 0.00 0.00 43.62 4.79
365 370 0.170561 TACGCAAGAGAGAAGACGGC 59.829 55.000 0.00 0.00 43.62 5.68
399 404 4.049393 GGCGCATAGGCTCGAAAT 57.951 55.556 10.83 0.00 42.90 2.17
400 405 2.321213 GGCGCATAGGCTCGAAATT 58.679 52.632 10.83 0.00 42.90 1.82
401 406 1.508632 GGCGCATAGGCTCGAAATTA 58.491 50.000 10.83 0.00 42.90 1.40
403 408 2.096218 GGCGCATAGGCTCGAAATTAAG 60.096 50.000 10.83 0.00 42.90 1.85
404 409 2.096218 GCGCATAGGCTCGAAATTAAGG 60.096 50.000 0.30 0.00 38.10 2.69
406 411 3.430218 CGCATAGGCTCGAAATTAAGGAG 59.570 47.826 0.00 0.00 38.10 3.69
411 416 1.255600 GCTCGAAATTAAGGAGCGTCG 59.744 52.381 8.86 0.00 43.10 5.12
413 418 2.784380 CTCGAAATTAAGGAGCGTCGAG 59.216 50.000 6.50 6.50 45.66 4.04
414 419 4.864429 CTCGAAATTAAGGAGCGTCGAGC 61.864 52.174 7.82 0.00 45.28 5.03
423 428 2.260434 GCGTCGAGCCACCACTAA 59.740 61.111 0.00 0.00 40.81 2.24
424 429 1.373748 GCGTCGAGCCACCACTAAA 60.374 57.895 0.00 0.00 40.81 1.85
425 430 1.623973 GCGTCGAGCCACCACTAAAC 61.624 60.000 0.00 0.00 40.81 2.01
427 432 1.145803 GTCGAGCCACCACTAAACAC 58.854 55.000 0.00 0.00 0.00 3.32
428 433 0.753867 TCGAGCCACCACTAAACACA 59.246 50.000 0.00 0.00 0.00 3.72
430 435 2.563620 TCGAGCCACCACTAAACACATA 59.436 45.455 0.00 0.00 0.00 2.29
431 436 2.930040 CGAGCCACCACTAAACACATAG 59.070 50.000 0.00 0.00 0.00 2.23
432 437 2.678336 GAGCCACCACTAAACACATAGC 59.322 50.000 0.00 0.00 0.00 2.97
433 438 1.743394 GCCACCACTAAACACATAGCC 59.257 52.381 0.00 0.00 0.00 3.93
434 439 2.878117 GCCACCACTAAACACATAGCCA 60.878 50.000 0.00 0.00 0.00 4.75
435 440 3.417101 CCACCACTAAACACATAGCCAA 58.583 45.455 0.00 0.00 0.00 4.52
436 441 3.440173 CCACCACTAAACACATAGCCAAG 59.560 47.826 0.00 0.00 0.00 3.61
437 442 3.440173 CACCACTAAACACATAGCCAAGG 59.560 47.826 0.00 0.00 0.00 3.61
438 443 3.329520 ACCACTAAACACATAGCCAAGGA 59.670 43.478 0.00 0.00 0.00 3.36
439 444 3.941483 CCACTAAACACATAGCCAAGGAG 59.059 47.826 0.00 0.00 0.00 3.69
440 445 4.323485 CCACTAAACACATAGCCAAGGAGA 60.323 45.833 0.00 0.00 0.00 3.71
442 447 5.122396 CACTAAACACATAGCCAAGGAGAAC 59.878 44.000 0.00 0.00 0.00 3.01
444 449 1.066143 ACACATAGCCAAGGAGAACCG 60.066 52.381 0.00 0.00 41.83 4.44
445 450 1.207089 CACATAGCCAAGGAGAACCGA 59.793 52.381 0.00 0.00 41.83 4.69
446 451 2.119495 ACATAGCCAAGGAGAACCGAT 58.881 47.619 0.00 0.00 41.83 4.18
448 453 2.981859 TAGCCAAGGAGAACCGATTC 57.018 50.000 0.00 0.00 41.83 2.52
449 454 0.984230 AGCCAAGGAGAACCGATTCA 59.016 50.000 0.00 0.00 41.83 2.57
450 455 1.561542 AGCCAAGGAGAACCGATTCAT 59.438 47.619 0.00 0.00 41.83 2.57
451 456 1.943340 GCCAAGGAGAACCGATTCATC 59.057 52.381 0.00 0.00 41.83 2.92
453 458 3.813443 CCAAGGAGAACCGATTCATCAT 58.187 45.455 0.00 0.00 41.83 2.45
454 459 3.562973 CCAAGGAGAACCGATTCATCATG 59.437 47.826 0.00 0.00 41.83 3.07
456 461 4.494091 AGGAGAACCGATTCATCATGTT 57.506 40.909 0.00 0.00 41.83 2.71
457 462 4.194640 AGGAGAACCGATTCATCATGTTG 58.805 43.478 0.00 0.00 41.83 3.33
458 463 3.313526 GGAGAACCGATTCATCATGTTGG 59.686 47.826 3.98 0.00 37.29 3.77
459 464 4.191544 GAGAACCGATTCATCATGTTGGA 58.808 43.478 3.98 0.00 37.29 3.53
460 465 4.785301 AGAACCGATTCATCATGTTGGAT 58.215 39.130 3.98 0.43 37.29 3.41
461 466 4.577693 AGAACCGATTCATCATGTTGGATG 59.422 41.667 2.09 0.00 44.78 3.51
462 467 2.620115 ACCGATTCATCATGTTGGATGC 59.380 45.455 2.09 0.00 43.44 3.91
463 468 2.350102 CCGATTCATCATGTTGGATGCG 60.350 50.000 2.09 6.21 43.44 4.73
465 470 3.363673 CGATTCATCATGTTGGATGCGAG 60.364 47.826 2.09 0.00 43.44 5.03
466 471 1.302366 TCATCATGTTGGATGCGAGC 58.698 50.000 3.98 0.00 43.44 5.03
467 472 1.134310 TCATCATGTTGGATGCGAGCT 60.134 47.619 3.98 0.00 43.44 4.09
468 473 1.263484 CATCATGTTGGATGCGAGCTC 59.737 52.381 2.73 2.73 38.35 4.09
469 474 0.462581 TCATGTTGGATGCGAGCTCC 60.463 55.000 8.47 1.40 0.00 4.70
470 475 0.745486 CATGTTGGATGCGAGCTCCA 60.745 55.000 8.47 7.76 41.03 3.86
471 476 0.182061 ATGTTGGATGCGAGCTCCAT 59.818 50.000 15.06 15.06 42.26 3.41
472 477 0.829990 TGTTGGATGCGAGCTCCATA 59.170 50.000 15.11 0.37 42.26 2.74
473 478 1.202568 TGTTGGATGCGAGCTCCATAG 60.203 52.381 15.11 0.37 42.26 2.23
474 479 1.069204 GTTGGATGCGAGCTCCATAGA 59.931 52.381 15.11 5.14 42.26 1.98
475 480 1.637338 TGGATGCGAGCTCCATAGAT 58.363 50.000 15.11 0.00 37.87 1.98
478 483 2.028658 GGATGCGAGCTCCATAGATTCA 60.029 50.000 15.11 0.06 32.72 2.57
479 484 2.808523 TGCGAGCTCCATAGATTCAG 57.191 50.000 8.47 0.00 0.00 3.02
481 486 2.223900 TGCGAGCTCCATAGATTCAGTG 60.224 50.000 8.47 0.00 0.00 3.66
482 487 2.402305 CGAGCTCCATAGATTCAGTGC 58.598 52.381 8.47 0.00 0.00 4.40
483 488 2.765122 GAGCTCCATAGATTCAGTGCC 58.235 52.381 0.87 0.00 0.00 5.01
484 489 1.069823 AGCTCCATAGATTCAGTGCCG 59.930 52.381 0.00 0.00 0.00 5.69
486 491 2.865670 GCTCCATAGATTCAGTGCCGAG 60.866 54.545 0.00 0.00 0.00 4.63
487 492 2.625314 CTCCATAGATTCAGTGCCGAGA 59.375 50.000 0.00 0.00 0.00 4.04
488 493 2.625314 TCCATAGATTCAGTGCCGAGAG 59.375 50.000 0.00 0.00 0.00 3.20
491 496 4.262377 CCATAGATTCAGTGCCGAGAGAAT 60.262 45.833 0.00 0.00 33.70 2.40
492 497 3.902881 AGATTCAGTGCCGAGAGAATT 57.097 42.857 0.00 0.00 31.35 2.17
493 498 4.213564 AGATTCAGTGCCGAGAGAATTT 57.786 40.909 0.00 0.00 31.35 1.82
519 524 8.786826 TTTAAGTAGACACGAATGGAAATCAT 57.213 30.769 0.00 0.00 37.79 2.45
520 525 9.878667 TTTAAGTAGACACGAATGGAAATCATA 57.121 29.630 0.00 0.00 34.44 2.15
521 526 7.772332 AAGTAGACACGAATGGAAATCATAC 57.228 36.000 0.00 0.00 34.44 2.39
523 528 6.757010 AGTAGACACGAATGGAAATCATACAC 59.243 38.462 0.00 0.00 34.44 2.90
525 530 5.812642 AGACACGAATGGAAATCATACACTC 59.187 40.000 0.00 0.00 34.44 3.51
526 531 5.734720 ACACGAATGGAAATCATACACTCT 58.265 37.500 0.00 0.00 34.44 3.24
527 532 6.873997 ACACGAATGGAAATCATACACTCTA 58.126 36.000 0.00 0.00 34.44 2.43
528 533 6.980978 ACACGAATGGAAATCATACACTCTAG 59.019 38.462 0.00 0.00 34.44 2.43
531 536 6.642950 CGAATGGAAATCATACACTCTAGGTC 59.357 42.308 0.00 0.00 34.44 3.85
532 537 5.871396 TGGAAATCATACACTCTAGGTCC 57.129 43.478 0.00 0.00 0.00 4.46
534 539 4.299978 GAAATCATACACTCTAGGTCCGC 58.700 47.826 0.00 0.00 0.00 5.54
536 541 0.311165 CATACACTCTAGGTCCGCCG 59.689 60.000 0.00 0.00 40.50 6.46
537 542 0.822532 ATACACTCTAGGTCCGCCGG 60.823 60.000 0.00 0.00 40.50 6.13
538 543 1.913951 TACACTCTAGGTCCGCCGGA 61.914 60.000 5.05 0.00 40.50 5.14
539 544 2.124236 ACTCTAGGTCCGCCGGAG 60.124 66.667 5.82 0.00 41.58 4.63
557 562 4.489771 GAGGGGGCGGTCCACATG 62.490 72.222 2.56 0.00 42.98 3.21
560 565 3.061848 GGGGCGGTCCACATGTTG 61.062 66.667 0.00 0.00 35.23 3.33
561 566 2.033448 GGGCGGTCCACATGTTGA 59.967 61.111 0.00 0.00 35.00 3.18
562 567 1.602323 GGGCGGTCCACATGTTGAA 60.602 57.895 0.39 0.00 35.00 2.69
563 568 1.586154 GGGCGGTCCACATGTTGAAG 61.586 60.000 0.39 0.69 35.00 3.02
565 570 0.517316 GCGGTCCACATGTTGAAGAC 59.483 55.000 0.39 4.13 0.00 3.01
568 573 1.156736 GTCCACATGTTGAAGACGGG 58.843 55.000 0.39 0.00 0.00 5.28
569 574 0.036164 TCCACATGTTGAAGACGGGG 59.964 55.000 0.00 0.00 0.00 5.73
570 575 1.586154 CCACATGTTGAAGACGGGGC 61.586 60.000 0.00 0.00 0.00 5.80
571 576 1.303317 ACATGTTGAAGACGGGGCC 60.303 57.895 0.00 0.00 0.00 5.80
572 577 2.046314 ATGTTGAAGACGGGGCCG 60.046 61.111 0.00 0.00 46.03 6.13
573 578 2.589157 ATGTTGAAGACGGGGCCGA 61.589 57.895 0.00 0.00 42.83 5.54
576 581 3.969250 TTGAAGACGGGGCCGATGC 62.969 63.158 0.00 0.00 42.83 3.91
578 583 4.778143 AAGACGGGGCCGATGCAC 62.778 66.667 0.00 0.00 42.83 4.57
589 594 3.747976 GATGCACCCACGGGCAAC 61.748 66.667 0.69 0.00 44.20 4.17
590 595 4.594854 ATGCACCCACGGGCAACA 62.595 61.111 0.69 0.00 44.20 3.33
591 596 3.884704 ATGCACCCACGGGCAACAT 62.885 57.895 0.69 0.55 44.20 2.71
592 597 4.054825 GCACCCACGGGCAACATG 62.055 66.667 0.69 0.00 39.32 3.21
594 599 2.282180 ACCCACGGGCAACATGTC 60.282 61.111 0.00 0.00 39.32 3.06
595 600 2.282110 CCCACGGGCAACATGTCA 60.282 61.111 0.00 0.00 39.74 3.58
598 603 0.602562 CCACGGGCAACATGTCATTT 59.397 50.000 0.00 0.00 39.74 2.32
599 604 1.669502 CCACGGGCAACATGTCATTTG 60.670 52.381 0.00 0.00 39.74 2.32
601 606 1.000385 ACGGGCAACATGTCATTTGTG 60.000 47.619 0.00 0.00 39.74 3.33
602 607 1.431496 GGGCAACATGTCATTTGTGC 58.569 50.000 9.03 9.03 39.74 4.57
603 608 1.270199 GGGCAACATGTCATTTGTGCA 60.270 47.619 17.23 0.00 39.74 4.57
605 610 2.413796 GGCAACATGTCATTTGTGCATG 59.586 45.455 17.23 12.61 43.84 4.06
606 611 2.159761 GCAACATGTCATTTGTGCATGC 60.160 45.455 11.82 11.82 42.50 4.06
607 612 2.373540 ACATGTCATTTGTGCATGCC 57.626 45.000 16.68 7.25 42.50 4.40
608 613 1.273688 CATGTCATTTGTGCATGCCG 58.726 50.000 16.68 0.00 34.47 5.69
611 616 1.074319 GTCATTTGTGCATGCCGCTG 61.074 55.000 16.68 5.90 43.06 5.18
612 617 1.807981 CATTTGTGCATGCCGCTGG 60.808 57.895 16.68 0.00 43.06 4.85
613 618 2.277591 ATTTGTGCATGCCGCTGGT 61.278 52.632 16.68 0.00 43.06 4.00
614 619 1.818959 ATTTGTGCATGCCGCTGGTT 61.819 50.000 16.68 0.00 43.06 3.67
615 620 1.175347 TTTGTGCATGCCGCTGGTTA 61.175 50.000 16.68 0.00 43.06 2.85
616 621 1.175347 TTGTGCATGCCGCTGGTTAA 61.175 50.000 16.68 0.00 43.06 2.01
617 622 1.175347 TGTGCATGCCGCTGGTTAAA 61.175 50.000 16.68 0.00 43.06 1.52
619 624 0.173029 TGCATGCCGCTGGTTAAATG 59.827 50.000 16.68 0.00 43.06 2.32
620 625 0.173255 GCATGCCGCTGGTTAAATGT 59.827 50.000 6.36 0.00 37.77 2.71
624 629 3.460857 TGCCGCTGGTTAAATGTTTTT 57.539 38.095 0.00 0.00 0.00 1.94
625 630 3.126831 TGCCGCTGGTTAAATGTTTTTG 58.873 40.909 0.00 0.00 0.00 2.44
626 631 3.127589 GCCGCTGGTTAAATGTTTTTGT 58.872 40.909 0.00 0.00 0.00 2.83
627 632 3.558006 GCCGCTGGTTAAATGTTTTTGTT 59.442 39.130 0.00 0.00 0.00 2.83
628 633 4.034626 GCCGCTGGTTAAATGTTTTTGTTT 59.965 37.500 0.00 0.00 0.00 2.83
629 634 5.234543 GCCGCTGGTTAAATGTTTTTGTTTA 59.765 36.000 0.00 0.00 0.00 2.01
630 635 6.073494 GCCGCTGGTTAAATGTTTTTGTTTAT 60.073 34.615 0.00 0.00 0.00 1.40
631 636 7.287229 CCGCTGGTTAAATGTTTTTGTTTATG 58.713 34.615 0.00 0.00 0.00 1.90
632 637 6.789877 CGCTGGTTAAATGTTTTTGTTTATGC 59.210 34.615 0.00 0.00 0.00 3.14
633 638 7.517417 CGCTGGTTAAATGTTTTTGTTTATGCA 60.517 33.333 0.00 0.00 0.00 3.96
634 639 8.125448 GCTGGTTAAATGTTTTTGTTTATGCAA 58.875 29.630 0.00 0.00 0.00 4.08
635 640 9.432077 CTGGTTAAATGTTTTTGTTTATGCAAC 57.568 29.630 0.00 0.00 35.71 4.17
636 641 9.167311 TGGTTAAATGTTTTTGTTTATGCAACT 57.833 25.926 0.00 0.00 36.21 3.16
641 646 9.905171 AAATGTTTTTGTTTATGCAACTTGTTT 57.095 22.222 0.00 0.00 36.21 2.83
642 647 8.892887 ATGTTTTTGTTTATGCAACTTGTTTG 57.107 26.923 0.00 0.00 36.21 2.93
643 648 8.087982 TGTTTTTGTTTATGCAACTTGTTTGA 57.912 26.923 0.00 0.00 37.39 2.69
644 649 8.559536 TGTTTTTGTTTATGCAACTTGTTTGAA 58.440 25.926 0.00 0.00 37.39 2.69
645 650 9.049974 GTTTTTGTTTATGCAACTTGTTTGAAG 57.950 29.630 0.00 0.00 37.39 3.02
646 651 7.897575 TTTGTTTATGCAACTTGTTTGAAGT 57.102 28.000 0.00 0.00 37.39 3.01
647 652 7.897575 TTGTTTATGCAACTTGTTTGAAGTT 57.102 28.000 0.00 0.00 40.80 2.66
648 653 8.988064 TTGTTTATGCAACTTGTTTGAAGTTA 57.012 26.923 0.00 0.00 38.32 2.24
649 654 9.593134 TTGTTTATGCAACTTGTTTGAAGTTAT 57.407 25.926 0.00 0.00 38.32 1.89
652 657 8.572828 TTATGCAACTTGTTTGAAGTTATGTG 57.427 30.769 0.00 0.00 38.32 3.21
654 659 4.803088 GCAACTTGTTTGAAGTTATGTGCA 59.197 37.500 0.00 0.00 38.32 4.57
656 661 6.562640 GCAACTTGTTTGAAGTTATGTGCATG 60.563 38.462 0.00 0.00 38.32 4.06
659 664 7.436118 ACTTGTTTGAAGTTATGTGCATGATT 58.564 30.769 0.00 0.00 0.00 2.57
660 665 7.383029 ACTTGTTTGAAGTTATGTGCATGATTG 59.617 33.333 0.00 0.00 0.00 2.67
675 680 5.992729 GCATGATTGCTTTTTGAATTGTGT 58.007 33.333 0.00 0.00 45.77 3.72
676 681 5.849081 GCATGATTGCTTTTTGAATTGTGTG 59.151 36.000 0.00 0.00 45.77 3.82
680 685 8.883954 TGATTGCTTTTTGAATTGTGTGATAA 57.116 26.923 0.00 0.00 0.00 1.75
684 689 9.932699 TTGCTTTTTGAATTGTGTGATAAAATG 57.067 25.926 0.00 0.00 0.00 2.32
685 690 9.107177 TGCTTTTTGAATTGTGTGATAAAATGT 57.893 25.926 0.00 0.00 0.00 2.71
686 691 9.934190 GCTTTTTGAATTGTGTGATAAAATGTT 57.066 25.926 0.00 0.00 0.00 2.71
699 704 9.638239 TGTGATAAAATGTTTGATCTTAAAGGC 57.362 29.630 4.83 0.00 30.68 4.35
700 705 9.638239 GTGATAAAATGTTTGATCTTAAAGGCA 57.362 29.630 4.83 0.00 30.68 4.75
704 709 7.816945 AAATGTTTGATCTTAAAGGCAATCG 57.183 32.000 0.00 0.00 0.00 3.34
705 710 6.757897 ATGTTTGATCTTAAAGGCAATCGA 57.242 33.333 0.00 0.00 0.00 3.59
706 711 6.567687 TGTTTGATCTTAAAGGCAATCGAA 57.432 33.333 0.00 0.00 0.00 3.71
707 712 6.611381 TGTTTGATCTTAAAGGCAATCGAAG 58.389 36.000 0.00 0.00 0.00 3.79
708 713 6.206634 TGTTTGATCTTAAAGGCAATCGAAGT 59.793 34.615 0.00 0.00 0.00 3.01
709 714 7.389330 TGTTTGATCTTAAAGGCAATCGAAGTA 59.611 33.333 0.00 0.00 0.00 2.24
710 715 8.398665 GTTTGATCTTAAAGGCAATCGAAGTAT 58.601 33.333 0.00 0.00 0.00 2.12
713 718 8.956426 TGATCTTAAAGGCAATCGAAGTATTTT 58.044 29.630 0.00 0.00 0.00 1.82
714 719 9.226345 GATCTTAAAGGCAATCGAAGTATTTTG 57.774 33.333 0.00 0.00 0.00 2.44
715 720 8.330466 TCTTAAAGGCAATCGAAGTATTTTGA 57.670 30.769 0.00 0.00 0.00 2.69
716 721 8.788806 TCTTAAAGGCAATCGAAGTATTTTGAA 58.211 29.630 0.00 0.00 30.61 2.69
717 722 9.573133 CTTAAAGGCAATCGAAGTATTTTGAAT 57.427 29.630 0.00 0.00 30.61 2.57
751 756 9.622004 CATTATGGAGATTGAGATATTTTGTGC 57.378 33.333 0.00 0.00 0.00 4.57
752 757 8.985315 TTATGGAGATTGAGATATTTTGTGCT 57.015 30.769 0.00 0.00 0.00 4.40
753 758 6.932356 TGGAGATTGAGATATTTTGTGCTC 57.068 37.500 0.00 0.00 0.00 4.26
754 759 5.525012 TGGAGATTGAGATATTTTGTGCTCG 59.475 40.000 0.00 0.00 0.00 5.03
755 760 5.755375 GGAGATTGAGATATTTTGTGCTCGA 59.245 40.000 0.00 0.00 0.00 4.04
756 761 6.073873 GGAGATTGAGATATTTTGTGCTCGAG 60.074 42.308 8.45 8.45 0.00 4.04
757 762 6.344500 AGATTGAGATATTTTGTGCTCGAGT 58.656 36.000 15.13 0.00 0.00 4.18
802 11113 1.134175 CCCATCGTGCCACCAAATTAC 59.866 52.381 0.00 0.00 0.00 1.89
810 11121 3.003482 GTGCCACCAAATTACACGTTACA 59.997 43.478 0.00 0.00 0.00 2.41
870 11181 1.228429 CCCGAAGCAACTTCCCCAA 60.228 57.895 1.92 0.00 37.20 4.12
965 11276 1.748500 GAAGCAGAGGAGGGCAAGC 60.749 63.158 0.00 0.00 0.00 4.01
1219 11576 2.027385 GGATGAAGGAAGGAATGTGCC 58.973 52.381 0.00 0.00 0.00 5.01
1253 11610 1.769733 CGTGCTGAATTGGGTTTGTG 58.230 50.000 0.00 0.00 0.00 3.33
1254 11611 1.066908 CGTGCTGAATTGGGTTTGTGT 59.933 47.619 0.00 0.00 0.00 3.72
1255 11612 2.472816 GTGCTGAATTGGGTTTGTGTG 58.527 47.619 0.00 0.00 0.00 3.82
1256 11613 1.202510 TGCTGAATTGGGTTTGTGTGC 60.203 47.619 0.00 0.00 0.00 4.57
1468 11838 1.009675 CCTCCTCCCCCTTCTTTCCTA 59.990 57.143 0.00 0.00 0.00 2.94
1469 11839 2.120312 CTCCTCCCCCTTCTTTCCTAC 58.880 57.143 0.00 0.00 0.00 3.18
1487 11858 7.856145 TTCCTACTAGTACCTTTCTAGTTCG 57.144 40.000 10.19 4.01 43.48 3.95
1495 11866 9.239002 CTAGTACCTTTCTAGTTCGATCAATTG 57.761 37.037 0.00 0.00 32.67 2.32
1512 11883 5.668471 TCAATTGTGGTTTCTGATGCAAAA 58.332 33.333 5.13 0.00 0.00 2.44
1561 12050 5.758296 TGACTAGTGTTAAACCAGCAAGAAG 59.242 40.000 0.00 0.00 0.00 2.85
1565 12054 4.022849 AGTGTTAAACCAGCAAGAAGATGC 60.023 41.667 0.00 0.00 46.78 3.91
1639 12981 8.917088 CATGTCCCTATAAGACCAATGATTTTT 58.083 33.333 1.23 0.00 33.09 1.94
1771 13601 5.003804 TGCAGTTTTAGAGGGTTGAGATTC 58.996 41.667 0.00 0.00 0.00 2.52
1776 13606 2.777832 AGAGGGTTGAGATTCACAGC 57.222 50.000 0.00 0.00 0.00 4.40
1777 13607 1.280421 AGAGGGTTGAGATTCACAGCC 59.720 52.381 8.18 8.18 37.79 4.85
1784 13829 4.320788 GGTTGAGATTCACAGCCTTTTCTG 60.321 45.833 9.23 0.00 39.86 3.02
1790 13835 5.541484 AGATTCACAGCCTTTTCTGGAAAAT 59.459 36.000 8.64 0.00 39.29 1.82
1846 13898 7.838079 TGCAAAGCACCCTAAATATGATAAT 57.162 32.000 0.00 0.00 31.71 1.28
1901 13955 0.390866 CTGCTGTCAGAACGAGCCAT 60.391 55.000 3.32 0.00 42.95 4.40
1904 13958 1.800805 CTGTCAGAACGAGCCATTGT 58.199 50.000 0.00 0.00 0.00 2.71
1916 13970 0.593128 GCCATTGTCGCTCTGTTGTT 59.407 50.000 0.00 0.00 0.00 2.83
1922 13976 1.954146 TCGCTCTGTTGTTGTCGCC 60.954 57.895 0.00 0.00 0.00 5.54
1923 13977 2.551270 GCTCTGTTGTTGTCGCCG 59.449 61.111 0.00 0.00 0.00 6.46
1924 13978 2.551270 CTCTGTTGTTGTCGCCGC 59.449 61.111 0.00 0.00 0.00 6.53
1925 13979 2.954753 CTCTGTTGTTGTCGCCGCC 61.955 63.158 0.00 0.00 0.00 6.13
1926 13980 4.368808 CTGTTGTTGTCGCCGCCG 62.369 66.667 0.00 0.00 0.00 6.46
1960 14014 1.135199 GTCGGCTTGACCTTGTCGATA 60.135 52.381 0.00 0.00 42.25 2.92
1963 14017 3.382227 TCGGCTTGACCTTGTCGATAATA 59.618 43.478 0.00 0.00 35.31 0.98
1968 14022 2.953648 TGACCTTGTCGATAATAGCCGA 59.046 45.455 0.00 0.00 34.95 5.54
1971 14025 3.253677 ACCTTGTCGATAATAGCCGAGAG 59.746 47.826 0.00 0.00 35.31 3.20
1985 14039 1.402456 CCGAGAGGTTTCGTACACCTG 60.402 57.143 8.05 0.00 45.30 4.00
1987 14041 1.000506 GAGAGGTTTCGTACACCTGCA 59.999 52.381 8.05 0.00 45.30 4.41
2022 14076 0.589229 CATGGAGTCGTAGTCGTCGC 60.589 60.000 0.00 0.00 38.33 5.19
2043 14099 2.802816 CCGTTGATCCCTTGAATCGATC 59.197 50.000 0.00 0.00 34.29 3.69
2080 14136 3.360533 CAAATCTCGTCGTAGCGTACAT 58.639 45.455 0.00 0.00 0.00 2.29
2100 14156 5.416947 ACATACGATGAGAAACACTAACCC 58.583 41.667 0.00 0.00 0.00 4.11
2101 14157 2.955614 ACGATGAGAAACACTAACCCG 58.044 47.619 0.00 0.00 0.00 5.28
2120 14176 1.972223 GCCGCCTCGAGGAGCTATA 60.972 63.158 35.69 0.00 37.39 1.31
2159 14215 1.961394 TCCTTCTAATCCGTCCCGATG 59.039 52.381 0.00 0.00 0.00 3.84
2171 14295 0.464036 TCCCGATGGACGAATTGGAG 59.536 55.000 0.00 0.00 45.77 3.86
2206 14331 2.608261 CGAAAGACTGGCTCGAAGAAGT 60.608 50.000 0.00 0.00 34.09 3.01
2211 14336 1.347817 CTGGCTCGAAGAAGTGTCGC 61.348 60.000 0.00 0.00 38.39 5.19
2212 14337 1.372997 GGCTCGAAGAAGTGTCGCA 60.373 57.895 0.00 0.00 38.39 5.10
2221 14346 1.278985 AGAAGTGTCGCAATCCATCCA 59.721 47.619 0.00 0.00 0.00 3.41
2224 14349 1.278985 AGTGTCGCAATCCATCCAAGA 59.721 47.619 0.00 0.00 0.00 3.02
2227 14352 1.936547 GTCGCAATCCATCCAAGAGTC 59.063 52.381 0.00 0.00 0.00 3.36
2228 14353 1.134401 TCGCAATCCATCCAAGAGTCC 60.134 52.381 0.00 0.00 0.00 3.85
2231 14356 0.181350 AATCCATCCAAGAGTCCGCC 59.819 55.000 0.00 0.00 0.00 6.13
2237 14362 4.020617 CAAGAGTCCGCCCCTGCA 62.021 66.667 0.00 0.00 37.32 4.41
2240 14367 3.785859 GAGTCCGCCCCTGCATGA 61.786 66.667 0.00 0.00 37.32 3.07
2271 14398 7.585579 ACCCTAACTTATCTACTAGCAGAAC 57.414 40.000 0.00 0.00 0.00 3.01
2283 14410 0.617820 AGCAGAACCCGAGGTACCAT 60.618 55.000 15.94 0.00 33.12 3.55
2286 14413 1.134788 CAGAACCCGAGGTACCATGAC 60.135 57.143 15.94 1.58 33.12 3.06
2352 14479 1.016130 CGAATCCACAAGTGCTCGCT 61.016 55.000 0.00 0.00 0.00 4.93
2364 14491 1.821332 GCTCGCTGGCTTGCCTTAT 60.821 57.895 13.18 0.00 0.00 1.73
2392 14520 2.143925 GGAAGAAAGACAACGGACTGG 58.856 52.381 0.00 0.00 0.00 4.00
2396 14524 2.319890 AAAGACAACGGACTGGCGGT 62.320 55.000 0.00 0.00 0.00 5.68
2617 15060 2.508526 GGATGTTGCTTGTTGGAGAGT 58.491 47.619 0.00 0.00 0.00 3.24
2647 15090 3.208747 TGAGTCAAGACAAAGGGTTCC 57.791 47.619 2.72 0.00 0.00 3.62
2706 15245 4.559502 CCCCCACACGATTCCATC 57.440 61.111 0.00 0.00 0.00 3.51
2707 15246 1.152963 CCCCCACACGATTCCATCC 60.153 63.158 0.00 0.00 0.00 3.51
2708 15247 1.523711 CCCCACACGATTCCATCCG 60.524 63.158 0.00 0.00 0.00 4.18
2709 15248 2.180204 CCCACACGATTCCATCCGC 61.180 63.158 0.00 0.00 0.00 5.54
2710 15249 1.449423 CCACACGATTCCATCCGCA 60.449 57.895 0.00 0.00 0.00 5.69
2716 15255 0.815213 CGATTCCATCCGCACCACAT 60.815 55.000 0.00 0.00 0.00 3.21
2718 15257 1.873591 GATTCCATCCGCACCACATAC 59.126 52.381 0.00 0.00 0.00 2.39
2722 15261 1.667236 CATCCGCACCACATACACAT 58.333 50.000 0.00 0.00 0.00 3.21
2726 15265 1.663643 CCGCACCACATACACATACAC 59.336 52.381 0.00 0.00 0.00 2.90
2731 15270 1.933181 CCACATACACATACACCGCTG 59.067 52.381 0.00 0.00 0.00 5.18
2732 15271 2.616960 CACATACACATACACCGCTGT 58.383 47.619 0.00 0.00 0.00 4.40
2756 15295 1.389106 GAACCGATCGTTTTCGTCAGG 59.611 52.381 15.09 0.00 44.46 3.86
2779 15324 0.389166 GAGCAGACAGTGTTCCTCCG 60.389 60.000 0.00 0.00 30.28 4.63
2780 15325 1.115930 AGCAGACAGTGTTCCTCCGT 61.116 55.000 0.00 0.00 0.00 4.69
2815 15360 5.712152 AAATAACTGCACTCCCTCAAAAG 57.288 39.130 0.00 0.00 0.00 2.27
2817 15362 2.557920 ACTGCACTCCCTCAAAAGAG 57.442 50.000 0.00 0.00 36.16 2.85
2818 15363 2.050144 ACTGCACTCCCTCAAAAGAGA 58.950 47.619 0.00 0.00 34.13 3.10
2822 15367 3.136443 TGCACTCCCTCAAAAGAGAGAAA 59.864 43.478 0.00 0.00 37.87 2.52
2823 15368 3.500299 GCACTCCCTCAAAAGAGAGAAAC 59.500 47.826 0.00 0.00 37.87 2.78
2824 15369 4.745172 GCACTCCCTCAAAAGAGAGAAACT 60.745 45.833 0.00 0.00 37.87 2.66
2825 15370 5.511545 GCACTCCCTCAAAAGAGAGAAACTA 60.512 44.000 0.00 0.00 37.87 2.24
2843 15390 2.107041 TACACGTGGGCAAGTGAGGG 62.107 60.000 21.57 0.00 42.16 4.30
2845 15392 4.641645 CGTGGGCAAGTGAGGGCA 62.642 66.667 0.00 0.00 0.00 5.36
2855 15403 1.378250 GTGAGGGCAATCTGCTGCT 60.378 57.895 0.00 0.00 44.28 4.24
2860 15408 2.301296 GAGGGCAATCTGCTGCTATCTA 59.699 50.000 0.00 0.00 44.28 1.98
2866 15414 5.236282 GCAATCTGCTGCTATCTAATCTGA 58.764 41.667 0.00 0.00 40.96 3.27
2867 15415 5.699915 GCAATCTGCTGCTATCTAATCTGAA 59.300 40.000 0.00 0.00 40.96 3.02
2879 15427 9.970395 GCTATCTAATCTGAATATCTGATCTGG 57.030 37.037 0.00 0.00 34.57 3.86
2921 15509 1.801178 CTGGACTTGTTCTCTTTCGCC 59.199 52.381 0.00 0.00 0.00 5.54
3124 15809 2.115348 ATATTACGTGCGGTCGTCAG 57.885 50.000 0.00 0.00 43.12 3.51
3157 15853 8.353684 AGATAATCTAATGTTGTGACGACTAGG 58.646 37.037 4.37 0.00 0.00 3.02
3162 15858 1.201647 TGTTGTGACGACTAGGCTAGC 59.798 52.381 21.26 6.04 0.00 3.42
3169 15865 1.231221 CGACTAGGCTAGCGAGTGAT 58.769 55.000 24.38 5.57 0.00 3.06
3170 15866 1.604755 CGACTAGGCTAGCGAGTGATT 59.395 52.381 24.38 4.91 0.00 2.57
3173 15869 4.434520 GACTAGGCTAGCGAGTGATTTTT 58.565 43.478 21.80 0.00 0.00 1.94
3219 15986 3.067040 GTGGTAGCAGAGCCTAGTAGAAC 59.933 52.174 0.00 0.00 0.00 3.01
3222 15989 1.754226 AGCAGAGCCTAGTAGAACAGC 59.246 52.381 0.00 0.00 0.00 4.40
3238 16005 2.597455 ACAGCCAGGCATAAAGTGTTT 58.403 42.857 15.80 0.00 0.00 2.83
3239 16006 2.965147 ACAGCCAGGCATAAAGTGTTTT 59.035 40.909 15.80 0.00 0.00 2.43
3255 16022 5.474825 AGTGTTTTAGTTTGTGTTGGGTTG 58.525 37.500 0.00 0.00 0.00 3.77
3260 16027 3.866883 AGTTTGTGTTGGGTTGTTGAG 57.133 42.857 0.00 0.00 0.00 3.02
3261 16028 3.161866 AGTTTGTGTTGGGTTGTTGAGT 58.838 40.909 0.00 0.00 0.00 3.41
3262 16029 3.576550 AGTTTGTGTTGGGTTGTTGAGTT 59.423 39.130 0.00 0.00 0.00 3.01
3263 16030 3.584406 TTGTGTTGGGTTGTTGAGTTG 57.416 42.857 0.00 0.00 0.00 3.16
3264 16031 2.796557 TGTGTTGGGTTGTTGAGTTGA 58.203 42.857 0.00 0.00 0.00 3.18
3265 16032 2.752354 TGTGTTGGGTTGTTGAGTTGAG 59.248 45.455 0.00 0.00 0.00 3.02
3266 16033 1.748493 TGTTGGGTTGTTGAGTTGAGC 59.252 47.619 0.00 0.00 0.00 4.26
3267 16034 2.024414 GTTGGGTTGTTGAGTTGAGCT 58.976 47.619 0.00 0.00 0.00 4.09
3268 16035 2.427095 GTTGGGTTGTTGAGTTGAGCTT 59.573 45.455 0.00 0.00 0.00 3.74
3269 16036 2.023673 TGGGTTGTTGAGTTGAGCTTG 58.976 47.619 0.00 0.00 0.00 4.01
3398 16165 0.994247 TCTACACCTACGGGGACTCA 59.006 55.000 3.71 0.00 38.76 3.41
3399 16166 1.567649 TCTACACCTACGGGGACTCAT 59.432 52.381 3.71 0.00 38.76 2.90
3401 16168 0.040646 ACACCTACGGGGACTCATCA 59.959 55.000 3.71 0.00 38.76 3.07
3451 16240 4.274705 ACACTGTCGAAACATATGCAACAA 59.725 37.500 1.58 0.00 34.13 2.83
3468 16257 3.064900 ACAAGGGCTTCTGAATCTGAC 57.935 47.619 0.00 0.00 0.00 3.51
3469 16258 2.005451 CAAGGGCTTCTGAATCTGACG 58.995 52.381 0.00 0.00 0.00 4.35
3472 16261 1.472376 GGGCTTCTGAATCTGACGGAG 60.472 57.143 0.00 0.00 0.00 4.63
3648 16437 4.929819 ACCTGCATCATGTACGTGTATA 57.070 40.909 14.63 0.00 0.00 1.47
3661 16457 1.226746 GTGTATATCCTTGCCACGCC 58.773 55.000 0.00 0.00 0.00 5.68
3662 16458 1.128200 TGTATATCCTTGCCACGCCT 58.872 50.000 0.00 0.00 0.00 5.52
3669 16471 2.741985 TTGCCACGCCTCACATCG 60.742 61.111 0.00 0.00 0.00 3.84
3680 16491 2.349886 GCCTCACATCGAACATTCAGAC 59.650 50.000 0.00 0.00 0.00 3.51
3725 16541 4.511826 ACTGAACTTGTCGGAATGTTTCTC 59.488 41.667 0.00 0.00 36.37 2.87
3726 16542 4.703897 TGAACTTGTCGGAATGTTTCTCT 58.296 39.130 0.00 0.00 0.00 3.10
3769 16585 0.179137 TCAGCATCATCGACACGGTC 60.179 55.000 0.00 0.00 0.00 4.79
3867 16684 6.348540 CCACTAGCCTATCAACAGTTCAAAAC 60.349 42.308 0.00 0.00 0.00 2.43
3897 16717 6.053005 CAGTACCTTCCTTGTTGTGTTTCTA 58.947 40.000 0.00 0.00 0.00 2.10
3898 16718 6.540914 CAGTACCTTCCTTGTTGTGTTTCTAA 59.459 38.462 0.00 0.00 0.00 2.10
3914 16734 7.278646 TGTGTTTCTAATAATGCTAGCTGTGAG 59.721 37.037 17.23 6.00 0.00 3.51
3959 16779 0.469331 TCGGTCACTGGGAGAACTGT 60.469 55.000 0.00 0.00 0.00 3.55
3969 16789 1.338020 GGGAGAACTGTGCCAACAAAG 59.662 52.381 0.00 0.00 37.15 2.77
3998 16818 1.663643 TGCGCAAACGAGTATGATTCC 59.336 47.619 8.16 0.00 43.93 3.01
4002 16822 4.608445 GCGCAAACGAGTATGATTCCATAC 60.608 45.833 0.30 7.32 45.59 2.39
4015 16835 1.529226 TCCATACCCAAACACTTGCG 58.471 50.000 0.00 0.00 0.00 4.85
4044 16870 3.313249 TCAGTTCATGTCTTGTGCAACTG 59.687 43.478 11.46 11.46 41.31 3.16
4078 16904 9.059260 CACAAGATTTGACATGATATGGTATCA 57.941 33.333 0.00 2.46 33.60 2.15
4117 16948 2.983136 CGCGATCGAGAGCATAAATCTT 59.017 45.455 21.57 0.00 38.10 2.40
4118 16949 3.181546 CGCGATCGAGAGCATAAATCTTG 60.182 47.826 21.57 0.00 38.10 3.02
4120 16951 3.737774 CGATCGAGAGCATAAATCTTGCA 59.262 43.478 10.26 0.00 42.62 4.08
4129 16960 6.264744 AGAGCATAAATCTTGCATGCAACTAT 59.735 34.615 28.80 20.82 45.95 2.12
4198 17115 6.528423 GTCTATGTTCACAGCAGTACTTGTAG 59.472 42.308 0.00 0.00 0.00 2.74
4216 17137 8.118976 ACTTGTAGAAACTACAGCAGTGTATA 57.881 34.615 12.46 0.00 38.51 1.47
4312 17234 1.296715 CCCGGTTGTGGAGAAGAGG 59.703 63.158 0.00 0.00 0.00 3.69
4374 17296 6.860080 ACCGTATATTCGACAAGAAGAAAGA 58.140 36.000 3.00 0.00 42.92 2.52
4375 17297 7.318141 ACCGTATATTCGACAAGAAGAAAGAA 58.682 34.615 3.00 0.00 42.92 2.52
4376 17298 7.488471 ACCGTATATTCGACAAGAAGAAAGAAG 59.512 37.037 3.00 0.00 42.92 2.85
4407 17329 7.597369 TGCTATGCCGTTATACATACAGTAAAG 59.403 37.037 0.00 0.00 36.05 1.85
4484 17420 3.414700 CCGCTGACACGCCAGTTC 61.415 66.667 0.00 0.00 36.57 3.01
4490 17428 0.666274 TGACACGCCAGTTCGATCAC 60.666 55.000 0.00 0.00 0.00 3.06
4595 17559 6.467723 AGTTGTAGTCTATTTGCTTGAACG 57.532 37.500 0.00 0.00 0.00 3.95
4620 17586 3.441496 ACAAATCCACAAGTGCAGTTG 57.559 42.857 28.65 28.65 0.00 3.16
4629 17595 3.058983 CACAAGTGCAGTTGAAAGCGATA 60.059 43.478 35.07 0.00 0.00 2.92
4636 17604 7.189512 AGTGCAGTTGAAAGCGATATTTTATC 58.810 34.615 0.00 0.00 0.00 1.75
4639 17607 8.243426 TGCAGTTGAAAGCGATATTTTATCTTT 58.757 29.630 0.00 0.00 0.00 2.52
4735 17710 3.236632 TCTTGGTGTCATGACTCGATG 57.763 47.619 25.55 19.60 0.00 3.84
4828 17805 3.662759 TCCAATAGAATGGGTGGGAAC 57.337 47.619 0.00 0.00 41.05 3.62
4934 17913 1.997874 AAGGGGAGCCTGCCTACAG 60.998 63.158 1.05 0.00 44.05 2.74
4982 17965 1.447314 GGAACCCGCGAGTACCTTG 60.447 63.158 8.23 0.00 0.00 3.61
4985 17968 2.163601 AACCCGCGAGTACCTTGGTC 62.164 60.000 8.23 0.00 0.00 4.02
5066 18049 4.641396 TGGTCTCGATGTTGTTCTTGATT 58.359 39.130 0.00 0.00 0.00 2.57
5130 18114 5.835257 AGGAAACACAAACATGAACATCTG 58.165 37.500 0.00 0.00 0.00 2.90
5131 18115 4.984161 GGAAACACAAACATGAACATCTGG 59.016 41.667 0.00 0.00 0.00 3.86
5132 18116 5.451798 GGAAACACAAACATGAACATCTGGT 60.452 40.000 0.00 0.00 0.00 4.00
5171 18165 3.631250 TGAAAGTGAAGAAACAAGGGCT 58.369 40.909 0.00 0.00 0.00 5.19
5184 18178 2.431683 GGGCTGACTGACCTTGCA 59.568 61.111 0.00 0.00 41.93 4.08
5187 18181 4.785767 CTGACTGACCTTGCAGCA 57.214 55.556 0.00 0.00 39.51 4.41
5282 18276 1.438651 GGCAACTACACGCAAGATCA 58.561 50.000 0.00 0.00 43.62 2.92
5291 18285 1.879380 CACGCAAGATCAAGGAACCAA 59.121 47.619 0.00 0.00 43.62 3.67
5296 18290 4.155826 CGCAAGATCAAGGAACCAAACATA 59.844 41.667 0.00 0.00 43.02 2.29
5298 18292 6.038356 GCAAGATCAAGGAACCAAACATATG 58.962 40.000 0.00 0.00 0.00 1.78
5299 18293 6.350445 GCAAGATCAAGGAACCAAACATATGT 60.350 38.462 1.41 1.41 0.00 2.29
5300 18294 6.764308 AGATCAAGGAACCAAACATATGTG 57.236 37.500 9.63 0.00 0.00 3.21
5301 18295 6.484288 AGATCAAGGAACCAAACATATGTGA 58.516 36.000 9.63 0.00 0.00 3.58
5305 18299 8.224389 TCAAGGAACCAAACATATGTGATATG 57.776 34.615 9.63 6.67 46.26 1.78
5307 18301 5.536161 AGGAACCAAACATATGTGATATGCC 59.464 40.000 9.63 7.87 45.05 4.40
5308 18302 5.437289 AACCAAACATATGTGATATGCCG 57.563 39.130 9.63 0.00 45.05 5.69
5338 18339 2.755836 ACGTTCAGACAATGCACAAC 57.244 45.000 0.00 0.00 0.00 3.32
5349 18353 3.253188 ACAATGCACAACGCTACTGAATT 59.747 39.130 0.00 0.00 43.06 2.17
5352 18356 5.621197 ATGCACAACGCTACTGAATTTTA 57.379 34.783 0.00 0.00 43.06 1.52
5355 18359 5.008217 TGCACAACGCTACTGAATTTTAGTT 59.992 36.000 0.00 0.00 43.06 2.24
5362 18366 6.142817 CGCTACTGAATTTTAGTTTTGCTGT 58.857 36.000 0.00 0.00 0.00 4.40
5363 18367 6.086765 CGCTACTGAATTTTAGTTTTGCTGTG 59.913 38.462 0.00 0.00 0.00 3.66
5364 18368 7.138736 GCTACTGAATTTTAGTTTTGCTGTGA 58.861 34.615 0.00 0.00 0.00 3.58
5365 18369 7.324616 GCTACTGAATTTTAGTTTTGCTGTGAG 59.675 37.037 0.00 0.00 0.00 3.51
5366 18370 7.333528 ACTGAATTTTAGTTTTGCTGTGAGA 57.666 32.000 0.00 0.00 0.00 3.27
5367 18371 7.420800 ACTGAATTTTAGTTTTGCTGTGAGAG 58.579 34.615 0.00 0.00 0.00 3.20
5368 18372 7.067494 ACTGAATTTTAGTTTTGCTGTGAGAGT 59.933 33.333 0.00 0.00 0.00 3.24
5369 18373 7.195646 TGAATTTTAGTTTTGCTGTGAGAGTG 58.804 34.615 0.00 0.00 0.00 3.51
5370 18374 4.552166 TTTAGTTTTGCTGTGAGAGTGC 57.448 40.909 0.00 0.00 0.00 4.40
5371 18375 2.042686 AGTTTTGCTGTGAGAGTGCA 57.957 45.000 0.00 0.00 34.69 4.57
5372 18376 1.945394 AGTTTTGCTGTGAGAGTGCAG 59.055 47.619 0.00 0.00 38.01 4.41
5373 18377 1.942657 GTTTTGCTGTGAGAGTGCAGA 59.057 47.619 0.00 0.00 38.01 4.26
5374 18378 1.875009 TTTGCTGTGAGAGTGCAGAG 58.125 50.000 0.00 0.00 38.01 3.35
5375 18379 3.873449 GCTGTGAGAGTGCAGAGC 58.127 61.111 0.00 0.00 45.89 4.09
5376 18380 1.741032 GCTGTGAGAGTGCAGAGCC 60.741 63.158 0.00 0.00 46.14 4.70
5377 18381 1.670015 CTGTGAGAGTGCAGAGCCA 59.330 57.895 0.00 0.00 34.87 4.75
5378 18382 0.390078 CTGTGAGAGTGCAGAGCCAG 60.390 60.000 0.00 0.00 34.87 4.85
5379 18383 1.117749 TGTGAGAGTGCAGAGCCAGT 61.118 55.000 0.00 0.00 0.00 4.00
5380 18384 0.891373 GTGAGAGTGCAGAGCCAGTA 59.109 55.000 0.00 0.00 0.00 2.74
5381 18385 1.273606 GTGAGAGTGCAGAGCCAGTAA 59.726 52.381 0.00 0.00 0.00 2.24
5382 18386 2.093764 GTGAGAGTGCAGAGCCAGTAAT 60.094 50.000 0.00 0.00 0.00 1.89
5383 18387 2.093816 TGAGAGTGCAGAGCCAGTAATG 60.094 50.000 0.00 0.00 0.00 1.90
5384 18388 1.209019 AGAGTGCAGAGCCAGTAATGG 59.791 52.381 4.42 4.42 0.00 3.16
5397 18401 5.327616 CCAGTAATGGCATTGAACATTCA 57.672 39.130 22.57 0.00 38.24 2.57
5398 18402 5.345702 CCAGTAATGGCATTGAACATTCAG 58.654 41.667 22.57 3.57 38.61 3.02
5399 18403 5.125900 CCAGTAATGGCATTGAACATTCAGA 59.874 40.000 22.57 0.00 38.61 3.27
5400 18404 6.263344 CAGTAATGGCATTGAACATTCAGAG 58.737 40.000 22.57 0.00 38.61 3.35
5401 18405 5.948162 AGTAATGGCATTGAACATTCAGAGT 59.052 36.000 22.57 0.00 38.61 3.24
5402 18406 4.713824 ATGGCATTGAACATTCAGAGTG 57.286 40.909 0.00 0.00 38.61 3.51
5403 18407 3.489355 TGGCATTGAACATTCAGAGTGT 58.511 40.909 0.00 0.00 38.61 3.55
5404 18408 3.253921 TGGCATTGAACATTCAGAGTGTG 59.746 43.478 0.00 0.00 38.61 3.82
5405 18409 3.503363 GGCATTGAACATTCAGAGTGTGA 59.497 43.478 0.00 0.00 38.61 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.681780 CCTTTTCATTGGAGGCCGCTA 60.682 52.381 6.40 0.00 0.00 4.26
61 62 0.036306 GAAGGAAGGAAGGGCAACGA 59.964 55.000 0.00 0.00 37.60 3.85
130 131 5.934935 TTTTACCTCATTGAGACGTTTCC 57.065 39.130 15.36 0.00 0.00 3.13
151 152 8.929487 TGAATACAAAGGTAAAGGATGGTTTTT 58.071 29.630 0.00 0.00 32.19 1.94
154 155 7.238710 ACTGAATACAAAGGTAAAGGATGGTT 58.761 34.615 0.00 0.00 32.19 3.67
155 156 6.790319 ACTGAATACAAAGGTAAAGGATGGT 58.210 36.000 0.00 0.00 32.19 3.55
190 191 2.631160 TTCACGGTCACCTCACATTT 57.369 45.000 0.00 0.00 0.00 2.32
242 244 3.007290 CCTTGTCCTCATCAAGTCACTGA 59.993 47.826 0.00 0.00 40.15 3.41
251 253 2.573009 TGCTCATTCCTTGTCCTCATCA 59.427 45.455 0.00 0.00 0.00 3.07
253 255 2.679059 CGTGCTCATTCCTTGTCCTCAT 60.679 50.000 0.00 0.00 0.00 2.90
282 284 4.088634 TCTCCACCTTTTATTGCATGCTT 58.911 39.130 20.33 9.09 0.00 3.91
287 289 4.272489 CTCCATCTCCACCTTTTATTGCA 58.728 43.478 0.00 0.00 0.00 4.08
332 337 3.207354 CGTAGCATCCCACCTCGT 58.793 61.111 0.00 0.00 0.00 4.18
348 353 0.389166 AAGCCGTCTTCTCTCTTGCG 60.389 55.000 0.00 0.00 0.00 4.85
364 369 2.869192 CGCCTCCTTCTTCTTATGAAGC 59.131 50.000 12.41 1.15 46.81 3.86
394 399 1.255600 GCTCGACGCTCCTTAATTTCG 59.744 52.381 0.00 0.00 35.14 3.46
396 401 1.066430 TGGCTCGACGCTCCTTAATTT 60.066 47.619 6.78 0.00 39.13 1.82
397 402 0.535335 TGGCTCGACGCTCCTTAATT 59.465 50.000 6.78 0.00 39.13 1.40
398 403 0.179108 GTGGCTCGACGCTCCTTAAT 60.179 55.000 6.78 0.00 39.13 1.40
399 404 1.214589 GTGGCTCGACGCTCCTTAA 59.785 57.895 6.78 0.00 39.13 1.85
400 405 2.707849 GGTGGCTCGACGCTCCTTA 61.708 63.158 6.78 0.00 39.13 2.69
401 406 4.070552 GGTGGCTCGACGCTCCTT 62.071 66.667 6.78 0.00 39.13 3.36
404 409 2.209064 TTAGTGGTGGCTCGACGCTC 62.209 60.000 6.78 2.10 39.13 5.03
406 411 1.373748 TTTAGTGGTGGCTCGACGC 60.374 57.895 0.00 0.00 38.13 5.19
407 412 0.319211 TGTTTAGTGGTGGCTCGACG 60.319 55.000 0.00 0.00 0.00 5.12
408 413 1.145803 GTGTTTAGTGGTGGCTCGAC 58.854 55.000 0.00 0.00 0.00 4.20
409 414 0.753867 TGTGTTTAGTGGTGGCTCGA 59.246 50.000 0.00 0.00 0.00 4.04
410 415 1.808411 ATGTGTTTAGTGGTGGCTCG 58.192 50.000 0.00 0.00 0.00 5.03
411 416 2.678336 GCTATGTGTTTAGTGGTGGCTC 59.322 50.000 0.00 0.00 0.00 4.70
413 418 1.743394 GGCTATGTGTTTAGTGGTGGC 59.257 52.381 0.00 0.00 0.00 5.01
414 419 3.066291 TGGCTATGTGTTTAGTGGTGG 57.934 47.619 0.00 0.00 0.00 4.61
415 420 3.440173 CCTTGGCTATGTGTTTAGTGGTG 59.560 47.826 0.00 0.00 0.00 4.17
417 422 3.941483 CTCCTTGGCTATGTGTTTAGTGG 59.059 47.826 0.00 0.00 0.00 4.00
419 424 5.246307 GTTCTCCTTGGCTATGTGTTTAGT 58.754 41.667 0.00 0.00 0.00 2.24
420 425 4.636206 GGTTCTCCTTGGCTATGTGTTTAG 59.364 45.833 0.00 0.00 0.00 1.85
422 427 3.421844 GGTTCTCCTTGGCTATGTGTTT 58.578 45.455 0.00 0.00 0.00 2.83
423 428 2.615493 CGGTTCTCCTTGGCTATGTGTT 60.615 50.000 0.00 0.00 0.00 3.32
424 429 1.066143 CGGTTCTCCTTGGCTATGTGT 60.066 52.381 0.00 0.00 0.00 3.72
425 430 1.207089 TCGGTTCTCCTTGGCTATGTG 59.793 52.381 0.00 0.00 0.00 3.21
427 432 2.918712 ATCGGTTCTCCTTGGCTATG 57.081 50.000 0.00 0.00 0.00 2.23
428 433 2.771943 TGAATCGGTTCTCCTTGGCTAT 59.228 45.455 10.29 0.00 35.33 2.97
430 435 0.984230 TGAATCGGTTCTCCTTGGCT 59.016 50.000 10.29 0.00 35.33 4.75
431 436 1.943340 GATGAATCGGTTCTCCTTGGC 59.057 52.381 10.29 0.00 35.33 4.52
432 437 3.266510 TGATGAATCGGTTCTCCTTGG 57.733 47.619 10.29 0.00 35.33 3.61
433 438 4.194640 ACATGATGAATCGGTTCTCCTTG 58.805 43.478 10.29 11.25 35.33 3.61
434 439 4.494091 ACATGATGAATCGGTTCTCCTT 57.506 40.909 10.29 0.00 35.33 3.36
435 440 4.194640 CAACATGATGAATCGGTTCTCCT 58.805 43.478 10.29 0.00 35.33 3.69
436 441 3.313526 CCAACATGATGAATCGGTTCTCC 59.686 47.826 10.29 1.98 35.33 3.71
437 442 4.191544 TCCAACATGATGAATCGGTTCTC 58.808 43.478 10.29 5.55 35.33 2.87
438 443 4.220693 TCCAACATGATGAATCGGTTCT 57.779 40.909 10.29 0.00 35.33 3.01
439 444 4.790766 GCATCCAACATGATGAATCGGTTC 60.791 45.833 4.25 0.08 43.94 3.62
440 445 3.067180 GCATCCAACATGATGAATCGGTT 59.933 43.478 4.25 0.00 43.94 4.44
442 447 2.350102 CGCATCCAACATGATGAATCGG 60.350 50.000 4.25 0.00 43.94 4.18
444 449 3.608707 GCTCGCATCCAACATGATGAATC 60.609 47.826 4.25 0.00 43.94 2.52
445 450 2.292569 GCTCGCATCCAACATGATGAAT 59.707 45.455 4.25 0.00 43.94 2.57
446 451 1.672363 GCTCGCATCCAACATGATGAA 59.328 47.619 4.25 0.00 43.94 2.57
448 453 1.263484 GAGCTCGCATCCAACATGATG 59.737 52.381 0.00 0.00 44.02 3.07
449 454 1.590932 GAGCTCGCATCCAACATGAT 58.409 50.000 0.00 0.00 0.00 2.45
450 455 0.462581 GGAGCTCGCATCCAACATGA 60.463 55.000 7.83 0.00 36.79 3.07
451 456 0.745486 TGGAGCTCGCATCCAACATG 60.745 55.000 7.83 0.00 43.87 3.21
453 458 3.067985 TGGAGCTCGCATCCAACA 58.932 55.556 7.83 0.00 43.87 3.33
457 462 2.028658 TGAATCTATGGAGCTCGCATCC 60.029 50.000 17.60 1.75 37.35 3.51
458 463 3.252400 CTGAATCTATGGAGCTCGCATC 58.748 50.000 17.60 7.90 0.00 3.91
459 464 2.632028 ACTGAATCTATGGAGCTCGCAT 59.368 45.455 18.00 18.00 0.00 4.73
460 465 2.034878 ACTGAATCTATGGAGCTCGCA 58.965 47.619 7.83 7.50 0.00 5.10
461 466 2.402305 CACTGAATCTATGGAGCTCGC 58.598 52.381 7.83 1.18 0.00 5.03
462 467 2.402305 GCACTGAATCTATGGAGCTCG 58.598 52.381 7.83 0.00 0.00 5.03
463 468 2.765122 GGCACTGAATCTATGGAGCTC 58.235 52.381 4.71 4.71 0.00 4.09
465 470 1.069204 TCGGCACTGAATCTATGGAGC 59.931 52.381 0.00 0.00 0.00 4.70
466 471 2.625314 TCTCGGCACTGAATCTATGGAG 59.375 50.000 0.00 0.00 0.00 3.86
467 472 2.625314 CTCTCGGCACTGAATCTATGGA 59.375 50.000 0.00 0.00 0.00 3.41
468 473 2.625314 TCTCTCGGCACTGAATCTATGG 59.375 50.000 0.00 0.00 0.00 2.74
469 474 3.998099 TCTCTCGGCACTGAATCTATG 57.002 47.619 0.00 0.00 0.00 2.23
470 475 5.543507 AATTCTCTCGGCACTGAATCTAT 57.456 39.130 0.00 0.00 0.00 1.98
471 476 5.344743 AAATTCTCTCGGCACTGAATCTA 57.655 39.130 0.00 0.00 0.00 1.98
472 477 3.902881 AATTCTCTCGGCACTGAATCT 57.097 42.857 0.00 0.00 0.00 2.40
473 478 4.954092 AAAATTCTCTCGGCACTGAATC 57.046 40.909 0.00 0.00 0.00 2.52
492 497 9.058174 TGATTTCCATTCGTGTCTACTTAAAAA 57.942 29.630 0.00 0.00 0.00 1.94
493 498 8.610248 TGATTTCCATTCGTGTCTACTTAAAA 57.390 30.769 0.00 0.00 0.00 1.52
497 502 7.277981 GTGTATGATTTCCATTCGTGTCTACTT 59.722 37.037 0.00 0.00 36.71 2.24
498 503 6.757010 GTGTATGATTTCCATTCGTGTCTACT 59.243 38.462 0.00 0.00 36.71 2.57
499 504 6.757010 AGTGTATGATTTCCATTCGTGTCTAC 59.243 38.462 0.00 0.00 36.71 2.59
502 507 5.812642 AGAGTGTATGATTTCCATTCGTGTC 59.187 40.000 0.00 0.00 36.71 3.67
503 508 5.734720 AGAGTGTATGATTTCCATTCGTGT 58.265 37.500 0.00 0.00 36.71 4.49
504 509 6.422100 CCTAGAGTGTATGATTTCCATTCGTG 59.578 42.308 0.00 0.00 36.71 4.35
506 511 6.516718 ACCTAGAGTGTATGATTTCCATTCG 58.483 40.000 0.00 0.00 36.71 3.34
507 512 6.931840 GGACCTAGAGTGTATGATTTCCATTC 59.068 42.308 0.00 0.00 36.71 2.67
510 515 4.341235 CGGACCTAGAGTGTATGATTTCCA 59.659 45.833 0.00 0.00 0.00 3.53
511 516 4.796618 GCGGACCTAGAGTGTATGATTTCC 60.797 50.000 0.00 0.00 0.00 3.13
513 518 3.069729 GGCGGACCTAGAGTGTATGATTT 59.930 47.826 0.00 0.00 0.00 2.17
514 519 2.628657 GGCGGACCTAGAGTGTATGATT 59.371 50.000 0.00 0.00 0.00 2.57
515 520 2.240279 GGCGGACCTAGAGTGTATGAT 58.760 52.381 0.00 0.00 0.00 2.45
516 521 1.688772 GGCGGACCTAGAGTGTATGA 58.311 55.000 0.00 0.00 0.00 2.15
517 522 0.311165 CGGCGGACCTAGAGTGTATG 59.689 60.000 0.00 0.00 0.00 2.39
519 524 1.452651 CCGGCGGACCTAGAGTGTA 60.453 63.158 24.41 0.00 0.00 2.90
520 525 2.754658 CCGGCGGACCTAGAGTGT 60.755 66.667 24.41 0.00 0.00 3.55
521 526 2.439701 TCCGGCGGACCTAGAGTG 60.440 66.667 27.46 0.00 0.00 3.51
523 528 2.907917 CCTCCGGCGGACCTAGAG 60.908 72.222 27.46 14.36 35.03 2.43
525 530 2.907917 CTCCTCCGGCGGACCTAG 60.908 72.222 27.46 17.98 0.00 3.02
526 531 4.517934 CCTCCTCCGGCGGACCTA 62.518 72.222 27.46 12.21 0.00 3.08
540 545 4.489771 CATGTGGACCGCCCCCTC 62.490 72.222 1.74 0.00 0.00 4.30
543 548 3.061848 CAACATGTGGACCGCCCC 61.062 66.667 0.00 0.00 0.00 5.80
544 549 1.586154 CTTCAACATGTGGACCGCCC 61.586 60.000 1.19 0.00 0.00 6.13
545 550 0.605319 TCTTCAACATGTGGACCGCC 60.605 55.000 1.19 0.00 0.00 6.13
549 554 1.156736 CCCGTCTTCAACATGTGGAC 58.843 55.000 1.19 6.90 0.00 4.02
550 555 0.036164 CCCCGTCTTCAACATGTGGA 59.964 55.000 0.00 0.00 0.00 4.02
551 556 1.586154 GCCCCGTCTTCAACATGTGG 61.586 60.000 0.00 0.00 0.00 4.17
552 557 1.586154 GGCCCCGTCTTCAACATGTG 61.586 60.000 0.00 0.00 0.00 3.21
553 558 1.303317 GGCCCCGTCTTCAACATGT 60.303 57.895 0.00 0.00 0.00 3.21
555 560 1.910580 ATCGGCCCCGTCTTCAACAT 61.911 55.000 6.61 0.00 40.74 2.71
557 562 2.106683 CATCGGCCCCGTCTTCAAC 61.107 63.158 6.61 0.00 40.74 3.18
560 565 4.467084 TGCATCGGCCCCGTCTTC 62.467 66.667 6.61 0.00 40.13 2.87
561 566 4.778143 GTGCATCGGCCCCGTCTT 62.778 66.667 6.61 0.00 40.13 3.01
572 577 3.747976 GTTGCCCGTGGGTGCATC 61.748 66.667 6.82 0.00 37.33 3.91
573 578 3.884704 ATGTTGCCCGTGGGTGCAT 62.885 57.895 6.82 6.07 37.33 3.96
576 581 2.597217 ACATGTTGCCCGTGGGTG 60.597 61.111 6.82 0.00 37.65 4.61
578 583 1.250154 AATGACATGTTGCCCGTGGG 61.250 55.000 0.00 0.00 34.14 4.61
579 584 0.602562 AAATGACATGTTGCCCGTGG 59.397 50.000 0.00 0.00 34.14 4.94
580 585 1.000385 ACAAATGACATGTTGCCCGTG 60.000 47.619 0.00 0.00 36.08 4.94
581 586 1.000385 CACAAATGACATGTTGCCCGT 60.000 47.619 0.00 0.00 0.00 5.28
582 587 1.700523 CACAAATGACATGTTGCCCG 58.299 50.000 0.00 0.00 0.00 6.13
583 588 1.270199 TGCACAAATGACATGTTGCCC 60.270 47.619 13.80 0.00 0.00 5.36
584 589 2.151881 TGCACAAATGACATGTTGCC 57.848 45.000 13.80 0.00 0.00 4.52
585 590 2.159761 GCATGCACAAATGACATGTTGC 60.160 45.455 14.21 10.35 40.02 4.17
586 591 2.413796 GGCATGCACAAATGACATGTTG 59.586 45.455 21.36 0.00 40.02 3.33
589 594 1.273688 CGGCATGCACAAATGACATG 58.726 50.000 21.36 13.24 40.44 3.21
590 595 0.458889 GCGGCATGCACAAATGACAT 60.459 50.000 21.36 0.00 45.45 3.06
591 596 1.080637 GCGGCATGCACAAATGACA 60.081 52.632 21.36 0.00 45.45 3.58
592 597 3.771299 GCGGCATGCACAAATGAC 58.229 55.556 21.36 0.00 45.45 3.06
601 606 0.173255 ACATTTAACCAGCGGCATGC 59.827 50.000 9.90 9.90 46.98 4.06
602 607 2.652941 AACATTTAACCAGCGGCATG 57.347 45.000 1.45 0.00 0.00 4.06
603 608 3.676291 AAAACATTTAACCAGCGGCAT 57.324 38.095 1.45 0.00 0.00 4.40
605 610 3.127589 ACAAAAACATTTAACCAGCGGC 58.872 40.909 0.00 0.00 0.00 6.53
606 611 5.726729 AAACAAAAACATTTAACCAGCGG 57.273 34.783 0.00 0.00 0.00 5.52
607 612 6.789877 GCATAAACAAAAACATTTAACCAGCG 59.210 34.615 0.00 0.00 0.00 5.18
608 613 7.634522 TGCATAAACAAAAACATTTAACCAGC 58.365 30.769 0.00 0.00 0.00 4.85
611 616 9.995957 AAGTTGCATAAACAAAAACATTTAACC 57.004 25.926 0.00 0.00 41.61 2.85
615 620 9.905171 AAACAAGTTGCATAAACAAAAACATTT 57.095 22.222 1.81 0.00 41.61 2.32
616 621 9.339492 CAAACAAGTTGCATAAACAAAAACATT 57.661 25.926 1.81 0.00 41.61 2.71
617 622 8.725148 TCAAACAAGTTGCATAAACAAAAACAT 58.275 25.926 1.81 0.00 41.61 2.71
619 624 8.941127 TTCAAACAAGTTGCATAAACAAAAAC 57.059 26.923 1.81 0.00 41.61 2.43
620 625 8.778358 ACTTCAAACAAGTTGCATAAACAAAAA 58.222 25.926 1.81 0.00 41.61 1.94
624 629 9.029243 CATAACTTCAAACAAGTTGCATAAACA 57.971 29.630 1.81 0.00 41.61 2.83
625 630 9.030301 ACATAACTTCAAACAAGTTGCATAAAC 57.970 29.630 1.81 0.00 40.38 2.01
626 631 9.029243 CACATAACTTCAAACAAGTTGCATAAA 57.971 29.630 1.81 0.00 40.38 1.40
627 632 7.168972 GCACATAACTTCAAACAAGTTGCATAA 59.831 33.333 1.81 0.00 40.38 1.90
628 633 6.640499 GCACATAACTTCAAACAAGTTGCATA 59.360 34.615 1.81 0.00 40.38 3.14
629 634 5.463061 GCACATAACTTCAAACAAGTTGCAT 59.537 36.000 1.81 0.00 40.38 3.96
630 635 4.803088 GCACATAACTTCAAACAAGTTGCA 59.197 37.500 1.81 0.00 40.38 4.08
631 636 4.803088 TGCACATAACTTCAAACAAGTTGC 59.197 37.500 1.81 6.09 40.38 4.17
632 637 6.696583 TCATGCACATAACTTCAAACAAGTTG 59.303 34.615 9.51 0.00 40.38 3.16
633 638 6.804677 TCATGCACATAACTTCAAACAAGTT 58.195 32.000 5.16 5.16 42.53 2.66
634 639 6.389830 TCATGCACATAACTTCAAACAAGT 57.610 33.333 0.00 0.00 0.00 3.16
635 640 7.726079 CAATCATGCACATAACTTCAAACAAG 58.274 34.615 0.00 0.00 0.00 3.16
636 641 7.640616 CAATCATGCACATAACTTCAAACAA 57.359 32.000 0.00 0.00 0.00 2.83
654 659 7.972832 ATCACACAATTCAAAAAGCAATCAT 57.027 28.000 0.00 0.00 0.00 2.45
659 664 9.107177 ACATTTTATCACACAATTCAAAAAGCA 57.893 25.926 0.00 0.00 0.00 3.91
660 665 9.934190 AACATTTTATCACACAATTCAAAAAGC 57.066 25.926 0.00 0.00 0.00 3.51
674 679 9.638239 TGCCTTTAAGATCAAACATTTTATCAC 57.362 29.630 0.00 0.00 0.00 3.06
680 685 7.601856 TCGATTGCCTTTAAGATCAAACATTT 58.398 30.769 0.00 0.00 0.00 2.32
682 687 6.757897 TCGATTGCCTTTAAGATCAAACAT 57.242 33.333 0.00 0.00 0.00 2.71
684 689 6.612306 ACTTCGATTGCCTTTAAGATCAAAC 58.388 36.000 0.00 0.00 0.00 2.93
685 690 6.817765 ACTTCGATTGCCTTTAAGATCAAA 57.182 33.333 0.00 0.00 0.00 2.69
686 691 8.506168 AATACTTCGATTGCCTTTAAGATCAA 57.494 30.769 0.00 0.00 0.00 2.57
687 692 8.506168 AAATACTTCGATTGCCTTTAAGATCA 57.494 30.769 0.00 0.00 0.00 2.92
689 694 8.956426 TCAAAATACTTCGATTGCCTTTAAGAT 58.044 29.630 0.00 0.00 0.00 2.40
690 695 8.330466 TCAAAATACTTCGATTGCCTTTAAGA 57.670 30.769 0.00 0.00 0.00 2.10
691 696 8.964420 TTCAAAATACTTCGATTGCCTTTAAG 57.036 30.769 0.00 0.00 0.00 1.85
694 699 9.921637 TTTATTCAAAATACTTCGATTGCCTTT 57.078 25.926 0.00 0.00 0.00 3.11
695 700 9.921637 TTTTATTCAAAATACTTCGATTGCCTT 57.078 25.926 0.00 0.00 0.00 4.35
725 730 9.622004 GCACAAAATATCTCAATCTCCATAATG 57.378 33.333 0.00 0.00 0.00 1.90
726 731 9.584008 AGCACAAAATATCTCAATCTCCATAAT 57.416 29.630 0.00 0.00 0.00 1.28
727 732 8.985315 AGCACAAAATATCTCAATCTCCATAA 57.015 30.769 0.00 0.00 0.00 1.90
728 733 7.386025 CGAGCACAAAATATCTCAATCTCCATA 59.614 37.037 0.00 0.00 0.00 2.74
729 734 6.204301 CGAGCACAAAATATCTCAATCTCCAT 59.796 38.462 0.00 0.00 0.00 3.41
730 735 5.525012 CGAGCACAAAATATCTCAATCTCCA 59.475 40.000 0.00 0.00 0.00 3.86
732 737 6.478344 ACTCGAGCACAAAATATCTCAATCTC 59.522 38.462 13.61 0.00 0.00 2.75
734 739 6.595772 ACTCGAGCACAAAATATCTCAATC 57.404 37.500 13.61 0.00 0.00 2.67
735 740 6.676456 GCAACTCGAGCACAAAATATCTCAAT 60.676 38.462 13.61 0.00 0.00 2.57
736 741 5.390885 GCAACTCGAGCACAAAATATCTCAA 60.391 40.000 13.61 0.00 0.00 3.02
738 743 4.331168 AGCAACTCGAGCACAAAATATCTC 59.669 41.667 13.61 0.00 0.00 2.75
740 745 4.331168 AGAGCAACTCGAGCACAAAATATC 59.669 41.667 13.61 0.00 35.36 1.63
742 747 3.664107 AGAGCAACTCGAGCACAAAATA 58.336 40.909 13.61 0.00 35.36 1.40
743 748 2.498167 AGAGCAACTCGAGCACAAAAT 58.502 42.857 13.61 0.00 35.36 1.82
744 749 1.953559 AGAGCAACTCGAGCACAAAA 58.046 45.000 13.61 0.00 35.36 2.44
745 750 2.610479 CCTAGAGCAACTCGAGCACAAA 60.610 50.000 13.61 0.00 33.05 2.83
746 751 1.067565 CCTAGAGCAACTCGAGCACAA 60.068 52.381 13.61 0.00 33.05 3.33
750 755 1.227118 GGCCTAGAGCAACTCGAGC 60.227 63.158 13.61 0.00 46.50 5.03
751 756 0.179124 GTGGCCTAGAGCAACTCGAG 60.179 60.000 11.84 11.84 42.76 4.04
752 757 1.890894 GTGGCCTAGAGCAACTCGA 59.109 57.895 3.32 0.00 42.76 4.04
753 758 1.517257 CGTGGCCTAGAGCAACTCG 60.517 63.158 3.32 1.45 44.03 4.18
754 759 0.461961 ATCGTGGCCTAGAGCAACTC 59.538 55.000 3.32 0.00 44.03 3.01
755 760 0.461961 GATCGTGGCCTAGAGCAACT 59.538 55.000 3.32 0.00 44.03 3.16
756 761 0.175760 TGATCGTGGCCTAGAGCAAC 59.824 55.000 14.78 0.00 46.50 4.17
757 762 0.461548 CTGATCGTGGCCTAGAGCAA 59.538 55.000 17.06 4.96 46.50 3.91
802 11113 1.134487 CAGGCCGCAATGTAACGTG 59.866 57.895 0.00 0.00 0.00 4.49
870 11181 3.374402 CTGCTGGTCGTCTCGGGT 61.374 66.667 0.00 0.00 0.00 5.28
895 11206 0.884514 GCTGGGTCCTCTGCTTTTTC 59.115 55.000 0.00 0.00 0.00 2.29
898 11209 1.682257 GAGCTGGGTCCTCTGCTTT 59.318 57.895 11.30 0.00 41.04 3.51
900 11211 2.686835 GGAGCTGGGTCCTCTGCT 60.687 66.667 11.11 10.24 43.09 4.24
983 11294 0.326048 CATCTCCCCTGTCCCTCTGT 60.326 60.000 0.00 0.00 0.00 3.41
1231 11588 0.031994 AAACCCAATTCAGCACGCAC 59.968 50.000 0.00 0.00 0.00 5.34
1232 11589 0.031857 CAAACCCAATTCAGCACGCA 59.968 50.000 0.00 0.00 0.00 5.24
1233 11590 0.031994 ACAAACCCAATTCAGCACGC 59.968 50.000 0.00 0.00 0.00 5.34
1234 11591 1.066908 ACACAAACCCAATTCAGCACG 59.933 47.619 0.00 0.00 0.00 5.34
1235 11592 2.472816 CACACAAACCCAATTCAGCAC 58.527 47.619 0.00 0.00 0.00 4.40
1236 11593 1.202510 GCACACAAACCCAATTCAGCA 60.203 47.619 0.00 0.00 0.00 4.41
1237 11594 1.069049 AGCACACAAACCCAATTCAGC 59.931 47.619 0.00 0.00 0.00 4.26
1238 11595 2.746269 CAGCACACAAACCCAATTCAG 58.254 47.619 0.00 0.00 0.00 3.02
1255 11612 2.815647 GGTACCTCTGCACGCAGC 60.816 66.667 14.25 0.00 43.31 5.25
1256 11613 1.446792 CAGGTACCTCTGCACGCAG 60.447 63.158 12.84 12.91 44.86 5.18
1469 11839 9.239002 CAATTGATCGAACTAGAAAGGTACTAG 57.761 37.037 0.00 0.00 38.49 2.57
1487 11858 5.063180 TGCATCAGAAACCACAATTGATC 57.937 39.130 13.59 2.53 0.00 2.92
1512 11883 4.694037 GGCACTAATTAAACTCTGTTCGGT 59.306 41.667 0.00 0.00 0.00 4.69
1596 12923 8.747538 AGGGACATGTGTATCTTTTAAATACC 57.252 34.615 1.15 0.00 0.00 2.73
1607 12949 6.665992 TGGTCTTATAGGGACATGTGTATC 57.334 41.667 1.15 0.00 35.61 2.24
1626 12968 7.887996 TGTTCAATAGCAAAAATCATTGGTC 57.112 32.000 0.00 0.00 41.04 4.02
1670 13012 3.242739 GGTAGGCACATAATTGACTTGCG 60.243 47.826 0.00 0.00 35.90 4.85
1771 13601 5.241506 TGAGTATTTTCCAGAAAAGGCTGTG 59.758 40.000 10.96 0.00 42.72 3.66
1823 13868 9.626045 GTAATTATCATATTTAGGGTGCTTTGC 57.374 33.333 0.00 0.00 0.00 3.68
1838 13883 9.379770 TCCAGAGACCTCAATGTAATTATCATA 57.620 33.333 0.00 0.00 32.46 2.15
1868 13922 0.592637 CAGCAGCAATGGTTGTTCGA 59.407 50.000 0.00 0.00 0.00 3.71
1901 13955 0.927537 CGACAACAACAGAGCGACAA 59.072 50.000 0.00 0.00 0.00 3.18
1904 13958 1.954146 GGCGACAACAACAGAGCGA 60.954 57.895 0.00 0.00 0.00 4.93
1936 13990 1.371183 CAAGGTCAAGCCGACTCCA 59.629 57.895 4.07 0.00 44.70 3.86
1956 14010 3.235195 CGAAACCTCTCGGCTATTATCG 58.765 50.000 0.00 0.00 35.14 2.92
1960 14014 2.756760 TGTACGAAACCTCTCGGCTATT 59.243 45.455 0.00 0.00 43.22 1.73
1963 14017 0.243095 GTGTACGAAACCTCTCGGCT 59.757 55.000 0.00 0.00 43.22 5.52
1968 14022 1.045407 TGCAGGTGTACGAAACCTCT 58.955 50.000 0.42 0.00 45.13 3.69
1971 14025 1.232621 GGGTGCAGGTGTACGAAACC 61.233 60.000 0.00 0.00 38.03 3.27
1985 14039 2.985847 GCACTGGTCCTTGGGTGC 60.986 66.667 11.69 11.69 45.93 5.01
1987 14041 2.162906 ATGGCACTGGTCCTTGGGT 61.163 57.895 0.00 0.00 0.00 4.51
2022 14076 2.309528 TCGATTCAAGGGATCAACGG 57.690 50.000 0.00 0.00 0.00 4.44
2051 14107 0.388134 CGACGAGATTTGGTGTCGGT 60.388 55.000 5.76 0.00 46.90 4.69
2080 14136 3.119388 CCGGGTTAGTGTTTCTCATCGTA 60.119 47.826 0.00 0.00 0.00 3.43
2118 14174 3.039011 AGCTCCGGTGTACATTCCTTAT 58.961 45.455 0.00 0.00 0.00 1.73
2120 14176 1.207329 GAGCTCCGGTGTACATTCCTT 59.793 52.381 0.87 0.00 0.00 3.36
2159 14215 1.269831 CGATCCTCCTCCAATTCGTCC 60.270 57.143 0.00 0.00 0.00 4.79
2195 14319 1.059835 GATTGCGACACTTCTTCGAGC 59.940 52.381 0.00 0.00 38.85 5.03
2206 14331 1.278985 ACTCTTGGATGGATTGCGACA 59.721 47.619 0.00 0.00 0.00 4.35
2211 14336 1.303309 GCGGACTCTTGGATGGATTG 58.697 55.000 0.00 0.00 0.00 2.67
2212 14337 0.181350 GGCGGACTCTTGGATGGATT 59.819 55.000 0.00 0.00 0.00 3.01
2221 14346 3.011517 ATGCAGGGGCGGACTCTT 61.012 61.111 0.00 0.00 45.35 2.85
2224 14349 3.329889 TTCATGCAGGGGCGGACT 61.330 61.111 0.00 0.00 45.35 3.85
2227 14352 0.679640 TTTAGTTCATGCAGGGGCGG 60.680 55.000 0.00 0.00 45.35 6.13
2228 14353 1.135402 GTTTTAGTTCATGCAGGGGCG 60.135 52.381 0.00 0.00 45.35 6.13
2231 14356 2.807676 AGGGTTTTAGTTCATGCAGGG 58.192 47.619 0.00 0.00 0.00 4.45
2271 14398 1.033574 GAGAGTCATGGTACCTCGGG 58.966 60.000 14.36 0.00 0.00 5.14
2283 14410 3.992641 TGGCGGGGAGGAGAGTCA 61.993 66.667 0.00 0.00 0.00 3.41
2323 14450 2.768344 TGGATTCGCCTCCCCTCC 60.768 66.667 1.25 0.00 37.63 4.30
2352 14479 3.594453 CCTTCCATAAGGCAAGCCA 57.406 52.632 14.40 0.00 45.78 4.75
2364 14491 1.827792 TGTCTTTCTTCCCCCTTCCA 58.172 50.000 0.00 0.00 0.00 3.53
2392 14520 2.352388 TGTTGTTAGCTAATCCACCGC 58.648 47.619 9.88 0.00 0.00 5.68
2396 14524 8.458573 TTTTCTCTTTGTTGTTAGCTAATCCA 57.541 30.769 9.88 0.72 0.00 3.41
2597 15040 2.227388 CACTCTCCAACAAGCAACATCC 59.773 50.000 0.00 0.00 0.00 3.51
2617 15060 3.566351 TGTCTTGACTCAACCTCTCTCA 58.434 45.455 2.35 0.00 0.00 3.27
2647 15090 3.922171 AATTAAGCTCAGAGAGTGGGG 57.078 47.619 0.00 0.00 31.39 4.96
2706 15245 1.663643 GTGTATGTGTATGTGGTGCGG 59.336 52.381 0.00 0.00 0.00 5.69
2707 15246 1.663643 GGTGTATGTGTATGTGGTGCG 59.336 52.381 0.00 0.00 0.00 5.34
2708 15247 1.663643 CGGTGTATGTGTATGTGGTGC 59.336 52.381 0.00 0.00 0.00 5.01
2709 15248 1.663643 GCGGTGTATGTGTATGTGGTG 59.336 52.381 0.00 0.00 0.00 4.17
2710 15249 1.553248 AGCGGTGTATGTGTATGTGGT 59.447 47.619 0.00 0.00 0.00 4.16
2716 15255 0.390603 GGCACAGCGGTGTATGTGTA 60.391 55.000 21.41 0.00 46.75 2.90
2718 15257 2.739704 CGGCACAGCGGTGTATGTG 61.740 63.158 21.41 9.30 46.95 3.21
2722 15261 2.356553 GTTCGGCACAGCGGTGTA 60.357 61.111 21.41 1.14 46.95 2.90
2756 15295 0.952984 GGAACACTGTCTGCTCTGCC 60.953 60.000 0.00 0.00 0.00 4.85
2779 15324 4.745620 GCAGTTATTTAGGTGATCCGAGAC 59.254 45.833 0.00 0.00 39.05 3.36
2780 15325 4.404394 TGCAGTTATTTAGGTGATCCGAGA 59.596 41.667 0.00 0.00 39.05 4.04
2815 15360 1.000506 TGCCCACGTGTAGTTTCTCTC 59.999 52.381 15.65 0.00 0.00 3.20
2817 15362 1.798813 CTTGCCCACGTGTAGTTTCTC 59.201 52.381 15.65 0.00 0.00 2.87
2818 15363 1.140252 ACTTGCCCACGTGTAGTTTCT 59.860 47.619 15.65 0.00 0.00 2.52
2822 15367 0.033504 CTCACTTGCCCACGTGTAGT 59.966 55.000 15.65 9.17 33.02 2.73
2823 15368 0.670546 CCTCACTTGCCCACGTGTAG 60.671 60.000 15.65 6.63 33.02 2.74
2824 15369 1.369692 CCTCACTTGCCCACGTGTA 59.630 57.895 15.65 0.00 33.02 2.90
2825 15370 2.111043 CCTCACTTGCCCACGTGT 59.889 61.111 15.65 0.00 33.02 4.49
2843 15390 5.236282 TCAGATTAGATAGCAGCAGATTGC 58.764 41.667 0.00 0.00 45.46 3.56
2845 15392 9.820725 GATATTCAGATTAGATAGCAGCAGATT 57.179 33.333 0.00 0.00 0.00 2.40
2860 15408 6.520401 GCCAGACCAGATCAGATATTCAGATT 60.520 42.308 0.00 0.00 0.00 2.40
2866 15414 3.006323 GTCGCCAGACCAGATCAGATATT 59.994 47.826 0.00 0.00 41.41 1.28
2867 15415 2.560542 GTCGCCAGACCAGATCAGATAT 59.439 50.000 0.00 0.00 41.41 1.63
2899 15447 2.483876 CGAAAGAGAACAAGTCCAGCA 58.516 47.619 0.00 0.00 0.00 4.41
2904 15452 0.164002 GCGGCGAAAGAGAACAAGTC 59.836 55.000 12.98 0.00 0.00 3.01
2986 15578 3.547746 TCATCCATGTGACCATGTGATG 58.452 45.455 18.18 18.18 45.83 3.07
3080 15762 1.269166 CTAATGGTGCGTCTCACGTC 58.731 55.000 0.00 0.00 46.56 4.34
3103 15788 2.969306 CTGACGACCGCACGTAATATAC 59.031 50.000 5.23 0.00 46.52 1.47
3145 15837 0.392060 TCGCTAGCCTAGTCGTCACA 60.392 55.000 9.66 0.00 0.00 3.58
3173 15869 5.991606 CACTGTCTAGACATCTGGTGAAAAA 59.008 40.000 26.93 4.36 41.01 1.94
3174 15870 5.070446 ACACTGTCTAGACATCTGGTGAAAA 59.930 40.000 32.95 9.57 41.01 2.29
3181 15881 4.439426 GCTACCACACTGTCTAGACATCTG 60.439 50.000 25.35 22.88 41.01 2.90
3188 15888 2.159310 GCTCTGCTACCACACTGTCTAG 60.159 54.545 0.00 0.00 0.00 2.43
3219 15986 3.665745 AAAACACTTTATGCCTGGCTG 57.334 42.857 21.03 10.95 0.00 4.85
3222 15989 6.420604 CACAAACTAAAACACTTTATGCCTGG 59.579 38.462 0.00 0.00 0.00 4.45
3238 16005 4.767928 ACTCAACAACCCAACACAAACTAA 59.232 37.500 0.00 0.00 0.00 2.24
3239 16006 4.337145 ACTCAACAACCCAACACAAACTA 58.663 39.130 0.00 0.00 0.00 2.24
3255 16022 1.599542 ACGCTTCAAGCTCAACTCAAC 59.400 47.619 8.02 0.00 39.60 3.18
3260 16027 1.439365 CGCACGCTTCAAGCTCAAC 60.439 57.895 8.02 0.00 39.60 3.18
3261 16028 1.887242 ACGCACGCTTCAAGCTCAA 60.887 52.632 8.02 0.00 39.60 3.02
3262 16029 2.280119 ACGCACGCTTCAAGCTCA 60.280 55.556 8.02 0.00 39.60 4.26
3263 16030 2.171940 CACGCACGCTTCAAGCTC 59.828 61.111 8.02 0.00 39.60 4.09
3264 16031 2.280119 TCACGCACGCTTCAAGCT 60.280 55.556 8.02 0.00 39.60 3.74
3265 16032 2.171940 CTCACGCACGCTTCAAGC 59.828 61.111 0.00 0.00 38.02 4.01
3266 16033 2.171940 GCTCACGCACGCTTCAAG 59.828 61.111 0.00 0.00 35.78 3.02
3267 16034 2.280119 AGCTCACGCACGCTTCAA 60.280 55.556 0.00 0.00 39.10 2.69
3268 16035 2.734723 GAGCTCACGCACGCTTCA 60.735 61.111 9.40 0.00 36.45 3.02
3269 16036 2.097038 ATGAGCTCACGCACGCTTC 61.097 57.895 20.97 0.00 36.45 3.86
3274 16041 3.031964 GCCACATGAGCTCACGCAC 62.032 63.158 20.97 4.11 39.10 5.34
3275 16042 2.743538 GCCACATGAGCTCACGCA 60.744 61.111 20.97 0.00 39.10 5.24
3398 16165 2.996621 GCACTTACACGAGCTCTTTGAT 59.003 45.455 12.85 3.00 0.00 2.57
3399 16166 2.404215 GCACTTACACGAGCTCTTTGA 58.596 47.619 12.85 0.00 0.00 2.69
3401 16168 1.608283 GGGCACTTACACGAGCTCTTT 60.608 52.381 12.85 0.00 0.00 2.52
3451 16240 0.539051 CCGTCAGATTCAGAAGCCCT 59.461 55.000 0.00 0.00 0.00 5.19
3468 16257 3.612004 GCGAATACAGGGTAATCTCTCCG 60.612 52.174 0.00 0.00 0.00 4.63
3469 16258 3.321111 TGCGAATACAGGGTAATCTCTCC 59.679 47.826 0.00 0.00 0.00 3.71
3472 16261 3.489785 CGTTGCGAATACAGGGTAATCTC 59.510 47.826 0.00 0.00 0.00 2.75
3634 16423 4.342665 TGGCAAGGATATACACGTACATGA 59.657 41.667 0.00 0.00 0.00 3.07
3637 16426 3.489568 CGTGGCAAGGATATACACGTACA 60.490 47.826 7.28 0.00 46.78 2.90
3648 16437 2.045926 GTGAGGCGTGGCAAGGAT 60.046 61.111 1.91 0.00 0.00 3.24
3659 16455 2.349886 GTCTGAATGTTCGATGTGAGGC 59.650 50.000 0.00 0.00 0.00 4.70
3661 16457 4.687948 ACAAGTCTGAATGTTCGATGTGAG 59.312 41.667 0.00 0.00 0.00 3.51
3662 16458 4.631131 ACAAGTCTGAATGTTCGATGTGA 58.369 39.130 0.00 0.00 0.00 3.58
3725 16541 0.101040 CACACCTGCCAACACACAAG 59.899 55.000 0.00 0.00 0.00 3.16
3726 16542 1.318886 CCACACCTGCCAACACACAA 61.319 55.000 0.00 0.00 0.00 3.33
3769 16585 5.121454 GCTCTTGTTGTAGAAGTCCTTCATG 59.879 44.000 9.54 0.00 41.84 3.07
3846 16662 6.204688 CAGTGTTTTGAACTGTTGATAGGCTA 59.795 38.462 0.00 0.00 40.17 3.93
3867 16684 1.072331 ACAAGGAAGGTACTGGCAGTG 59.928 52.381 29.65 12.06 40.86 3.66
3914 16734 2.191641 GACCATCCCTCCTGCAGC 59.808 66.667 8.66 0.00 0.00 5.25
3998 16818 0.881118 AGCGCAAGTGTTTGGGTATG 59.119 50.000 11.47 0.00 45.93 2.39
4002 16822 1.650825 AAAAAGCGCAAGTGTTTGGG 58.349 45.000 11.47 0.57 46.67 4.12
4044 16870 7.008440 TCATGTCAAATCTTGTGATCGAATC 57.992 36.000 0.00 0.00 31.51 2.52
4078 16904 1.369091 CGTAGCTGCAAGGCGGATTT 61.369 55.000 1.02 0.00 37.02 2.17
4118 16949 8.337104 ACATCTTTGTAGGCATAGTTGCATGC 62.337 42.308 11.82 11.82 43.86 4.06
4120 16951 5.066893 CACATCTTTGTAGGCATAGTTGCAT 59.933 40.000 0.00 0.00 46.23 3.96
4129 16960 1.202867 TGCACCACATCTTTGTAGGCA 60.203 47.619 0.00 0.00 34.77 4.75
4198 17115 7.481798 GCAAAATGTATACACTGCTGTAGTTTC 59.518 37.037 20.98 0.14 37.60 2.78
4216 17137 3.274288 GCACTCTAGCTAGGCAAAATGT 58.726 45.455 20.58 6.00 0.00 2.71
4376 17298 3.325870 TGTATAACGGCATAGCATCTGC 58.674 45.455 0.00 0.00 42.49 4.26
4424 17348 8.904834 CAGCCCGTATATCTACTCTATATTTGT 58.095 37.037 0.00 0.00 0.00 2.83
4425 17349 8.353684 CCAGCCCGTATATCTACTCTATATTTG 58.646 40.741 0.00 0.00 0.00 2.32
4426 17350 8.280084 TCCAGCCCGTATATCTACTCTATATTT 58.720 37.037 0.00 0.00 0.00 1.40
4427 17351 7.813331 TCCAGCCCGTATATCTACTCTATATT 58.187 38.462 0.00 0.00 0.00 1.28
4431 17355 5.498393 CTTCCAGCCCGTATATCTACTCTA 58.502 45.833 0.00 0.00 0.00 2.43
4434 17358 3.181420 ACCTTCCAGCCCGTATATCTACT 60.181 47.826 0.00 0.00 0.00 2.57
4484 17420 3.736252 CCTATTGAAGCGGTAAGTGATCG 59.264 47.826 0.00 0.00 33.53 3.69
4490 17428 4.260091 GCGTAAACCTATTGAAGCGGTAAG 60.260 45.833 0.00 0.00 0.00 2.34
4595 17559 5.772521 ACTGCACTTGTGGATTTGTTTATC 58.227 37.500 2.81 0.00 0.00 1.75
4667 17639 5.924825 GTCTCAGATTTAACGGTAACACACT 59.075 40.000 0.00 0.00 0.00 3.55
4671 17643 6.693466 TCATGTCTCAGATTTAACGGTAACA 58.307 36.000 0.00 0.00 0.00 2.41
4723 17697 6.046593 GGTTATTTGTACCATCGAGTCATGA 58.953 40.000 0.00 0.00 35.67 3.07
4735 17710 6.760298 GGCTAGTAGAACAGGTTATTTGTACC 59.240 42.308 0.00 0.00 35.85 3.34
4744 17719 3.792515 AGAAGGGCTAGTAGAACAGGTT 58.207 45.455 0.00 0.00 0.00 3.50
4746 17721 5.141182 TCATAGAAGGGCTAGTAGAACAGG 58.859 45.833 0.00 0.00 31.33 4.00
4849 17826 3.387374 TGATTTGGTGCACCATTTGTTCT 59.613 39.130 37.97 17.38 46.97 3.01
4906 17885 2.025887 CAGGCTCCCCTTGTTTAGATGT 60.026 50.000 0.00 0.00 40.33 3.06
4934 17913 1.374252 ACACTGACGACCGATTGCC 60.374 57.895 0.00 0.00 0.00 4.52
4973 17956 1.805945 CGCGCTGACCAAGGTACTC 60.806 63.158 5.56 0.00 38.49 2.59
5066 18049 3.619733 GCAGACAAGTGTACCATGATGGA 60.620 47.826 20.11 0.00 40.96 3.41
5108 18092 4.984161 CCAGATGTTCATGTTTGTGTTTCC 59.016 41.667 0.00 0.00 0.00 3.13
5109 18093 5.591099 ACCAGATGTTCATGTTTGTGTTTC 58.409 37.500 0.00 0.00 0.00 2.78
5110 18094 5.596836 ACCAGATGTTCATGTTTGTGTTT 57.403 34.783 0.00 0.00 0.00 2.83
5111 18095 5.596836 AACCAGATGTTCATGTTTGTGTT 57.403 34.783 0.00 0.00 28.45 3.32
5130 18114 3.435327 TCAAGTGTATGCGATTGTGAACC 59.565 43.478 0.00 0.00 0.00 3.62
5131 18115 4.661993 TCAAGTGTATGCGATTGTGAAC 57.338 40.909 0.00 0.00 0.00 3.18
5132 18116 5.238432 ACTTTCAAGTGTATGCGATTGTGAA 59.762 36.000 0.00 0.00 37.98 3.18
5160 18154 1.202818 AGGTCAGTCAGCCCTTGTTTC 60.203 52.381 0.00 0.00 0.00 2.78
5164 18158 2.938354 CAAGGTCAGTCAGCCCTTG 58.062 57.895 3.50 3.50 46.57 3.61
5167 18161 1.673665 CTGCAAGGTCAGTCAGCCC 60.674 63.158 0.00 0.00 0.00 5.19
5171 18165 1.134128 TCTTTGCTGCAAGGTCAGTCA 60.134 47.619 21.58 2.02 36.49 3.41
5184 18178 2.048127 GCCGTCGACCTCTTTGCT 60.048 61.111 10.58 0.00 0.00 3.91
5187 18181 1.004918 CCTTGCCGTCGACCTCTTT 60.005 57.895 10.58 0.00 0.00 2.52
5282 18276 6.040842 GGCATATCACATATGTTTGGTTCCTT 59.959 38.462 5.37 0.00 43.52 3.36
5291 18285 3.338249 GCCTCGGCATATCACATATGTT 58.662 45.455 5.37 0.00 43.52 2.71
5305 18299 2.171489 GAACGTTCTTGTGCCTCGGC 62.171 60.000 20.97 0.00 42.35 5.54
5307 18301 0.508641 CTGAACGTTCTTGTGCCTCG 59.491 55.000 27.32 3.07 0.00 4.63
5308 18302 1.527311 GTCTGAACGTTCTTGTGCCTC 59.473 52.381 27.32 0.26 0.00 4.70
5321 18322 1.398595 GCGTTGTGCATTGTCTGAAC 58.601 50.000 0.00 0.00 45.45 3.18
5338 18339 6.086765 CACAGCAAAACTAAAATTCAGTAGCG 59.913 38.462 0.00 0.00 0.00 4.26
5349 18353 3.944650 TGCACTCTCACAGCAAAACTAAA 59.055 39.130 0.00 0.00 34.97 1.85
5352 18356 1.945394 CTGCACTCTCACAGCAAAACT 59.055 47.619 0.00 0.00 37.89 2.66
5355 18359 1.875009 CTCTGCACTCTCACAGCAAA 58.125 50.000 0.00 0.00 37.89 3.68
5362 18366 1.632589 TTACTGGCTCTGCACTCTCA 58.367 50.000 0.00 0.00 0.00 3.27
5363 18367 2.548875 CATTACTGGCTCTGCACTCTC 58.451 52.381 0.00 0.00 0.00 3.20
5364 18368 1.209019 CCATTACTGGCTCTGCACTCT 59.791 52.381 0.00 0.00 35.23 3.24
5365 18369 1.661341 CCATTACTGGCTCTGCACTC 58.339 55.000 0.00 0.00 35.23 3.51
5366 18370 3.869623 CCATTACTGGCTCTGCACT 57.130 52.632 0.00 0.00 35.23 4.40
5375 18379 5.125900 TCTGAATGTTCAATGCCATTACTGG 59.874 40.000 0.00 0.00 40.17 4.00
5376 18380 6.127814 ACTCTGAATGTTCAATGCCATTACTG 60.128 38.462 0.00 0.00 36.64 2.74
5377 18381 5.948162 ACTCTGAATGTTCAATGCCATTACT 59.052 36.000 0.00 0.00 36.64 2.24
5378 18382 6.032094 CACTCTGAATGTTCAATGCCATTAC 58.968 40.000 0.00 0.00 36.64 1.89
5379 18383 5.711506 ACACTCTGAATGTTCAATGCCATTA 59.288 36.000 0.00 0.00 36.64 1.90
5380 18384 4.525487 ACACTCTGAATGTTCAATGCCATT 59.475 37.500 0.00 0.00 36.64 3.16
5381 18385 4.082408 CACACTCTGAATGTTCAATGCCAT 60.082 41.667 0.00 0.00 36.64 4.40
5382 18386 3.253921 CACACTCTGAATGTTCAATGCCA 59.746 43.478 0.00 0.00 36.64 4.92
5383 18387 3.503363 TCACACTCTGAATGTTCAATGCC 59.497 43.478 0.00 0.00 36.64 4.40
5384 18388 4.754372 TCACACTCTGAATGTTCAATGC 57.246 40.909 0.00 0.00 36.64 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.